association	dataset	threshold value	standardized value
Evacetrapib	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.23
BMY 7378	DeepCoverMOA Drug Mechanisms of Action	-1.0	-1.17
JHUEM7	DepMap CRISPR Gene Dependency	1.0	2.12033
GSE186810,GSE186813_2_v_5_furin_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
H3K36me3_H1 BMP4 Derived Trophoblast Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
NNC 26-9100	DeepCoverMOA Drug Mechanisms of Action	1.0	0.57
LS-411N	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-H7-A6C5-11A-11R-A30B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
HCC1187_BREAST	CCLE Cell Line Proteomics	1.0	2.0577
VIIB, left, lateral hemisphere	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.07882
reduced	GeneRIF Biological Term Annotations	1.0	null
MYH10	Pathway Commons Protein-Protein Interactions	1.0	null
ATF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.1671
TBP	ENCODE Transcription Factor Targets	1.0	null
DHX8	Pathway Commons Protein-Protein Interactions	1.0	null
superficial stratum of PHyB-D	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.71012
MIF	Pathway Commons Protein-Protein Interactions	1.0	null
hsa-miR-4726-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
extracellular region	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
GSE149901_2_v_1_anlotinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
SDHA	Pathway Commons Protein-Protein Interactions	1.0	null
cell lysate	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.309697
COV318	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.58071
EMG1	Pathway Commons Protein-Protein Interactions	1.0	null
Perindopril	DeepCoverMOA Drug Mechanisms of Action	-1.0	-1.64
ECGI10	CCLE Cell Line Gene CNV Profiles	1.0	1.91317
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02829
PAX6-23342162-BETA-FORBRAIN-LENS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
MKN45	CCLE Cell Line Gene CNV Profiles	1.0	1.67974
Acifran	DeepCoverMOA Drug Mechanisms of Action	1.0	0.44
membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
superior rostral gyrus, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.37555
H4/H2A histone acetyltransferase complex	GO Cellular Component Annotations 2023	1.0	null
IARS	Pathway Commons Protein-Protein Interactions	1.0	null
superficial gray layer of SC	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.34496
ENO2	Pathway Commons Protein-Protein Interactions	1.0	null
GNB1	Pathway Commons Protein-Protein Interactions	1.0	null
superficial stratum of THyB-D	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.63405
Cyanuric chloride	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.27
ATP5B	Pathway Commons Protein-Protein Interactions	1.0	null
CA3 field, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.02217
GSE164505,GSE164506_3_v_2_indisulam_human	RummaGEO Drug Perturbation Signatures	1.0	null
STON2	Pathway Commons Protein-Protein Interactions	1.0	null
CCT7	Pathway Commons Protein-Protein Interactions	1.0	null
PTPLAD1	Pathway Commons Protein-Protein Interactions	1.0	null
ZNF143	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.2078
H3K9me3_fibroblast of lung_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
GSE71468,GSE76476_0_v_1_rbfox1_human	RummaGEO Gene Perturbation Signatures	1.0	null
BL2757 (CRABP2)	NURSA Protein Complexes	1.0	null
KOPN-8	Sanger Dependency Map Cancer Cell Line Proteomics	1.0	1.89377
2-PMPA	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.56
Hepatoma cell	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
ATG7	Pathway Commons Protein-Protein Interactions	1.0	null
HOXA5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.4172
H3K27ac_H1 BMP4 Derived Trophoblast Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
Acute Myeloid Leukemia_LAML_TCGA-AB-2949-03B-01T-0748-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Leupeptin	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.26
CCT5	Pathway Commons Protein-Protein Interactions	1.0	null
FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.6973
RPN1	Pathway Commons Protein-Protein Interactions	1.0	null
COR-L279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28972
TBP_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CBC552 (TACC3)	NURSA Protein Complexes	1.0	null
lymph node	HPA Tissue Protein Expression Profiles	1.0	0.905838
PABPC1	Pathway Commons Protein-Protein Interactions	1.0	null
BL5495 (RAD18)	NURSA Protein Complexes	1.0	null
Disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.582
Lung adenocarcinoma_LUAD_TCGA-67-6216-01A-11R-1755-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
midbrain	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.28015
Prostate adenocarcinoma_PRAD_TCGA-HC-7211-01A-11R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
20081105-ST-2	GeneSigDB Published Gene Signatures	1.0	null
NDUFA9	Pathway Commons Protein-Protein Interactions	1.0	null
PMC8047442-EMBJ-40-e105492-s003.xlsx-MR_plot_analysis-Gene_names_NR3C2	Rummagene Transcription Factor Associations 2026	1.0	null
COV362	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.3346
Cardiomyocyte cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.516
Sarcoma_SARC_TCGA-KF-A41W-01A-11R-A24X-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PFKFB3	Pathway Commons Protein-Protein Interactions	1.0	null
BL2583 (NCOR1)	NURSA Protein Complexes	1.0	null
CUL2	Pathway Commons Protein-Protein Interactions	1.0	null
U-266 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.642
RFC4	Pathway Commons Protein-Protein Interactions	1.0	null
PIK3C2A	Pathway Commons Protein-Protein Interactions	1.0	null
YWHAZ	Pathway Commons Protein-Protein Interactions	1.0	null
RPN2	Pathway Commons Protein-Protein Interactions	1.0	null
NCI-H1581	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04341
BT-20	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.30087
MYC_MCF 10A_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Secretory granule membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.828
epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051002
FOSL2::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	71.5342
PRMT5	Pathway Commons Protein-Protein Interactions	1.0	null
cell morphogenesis involved in neuron differentiation	GO Biological Process Annotations 2025	1.0	null
Immune Suppression	DisGeNET Gene-Phenotype Associations	1.0	null
ARHGAP21	Pathway Commons Protein-Protein Interactions	1.0	null
Dlx5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.2129
FOXL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.5075
SP in entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.10609
GSE142210_9_v_8_panobinostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
polymorphic layer of caudal subiculum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.82308
GSE142210_2_v_0_panobinostat_human	RummaGEO Drug Perturbation Signatures	-1.0	null
DOK1	Pathway Commons Protein-Protein Interactions	1.0	null
RFC1	Pathway Commons Protein-Protein Interactions	1.0	null
cell part	LOCATE Predicted Protein Localization Annotations	1.0	null
NCI-H720	Sanger Dependency Map Cancer Cell Line Proteomics	-1.0	-2.61436
GSE107505_3_v_2_nanog_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
496100391_FWM_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.18301
periventricular stratum of r1Ve	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.23209
SEC24C	Pathway Commons Protein-Protein Interactions	1.0	null
RPS8	Pathway Commons Protein-Protein Interactions	1.0	null
NCI-H1930	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.976072
Urinary Stress Incontinence	DisGeNET Gene-Disease Associations	1.0	null
PMC7415402-oncotarget-11-2995-s004.xlsx-EWS-FLI1_Type_1_vs_Type_3-Gene_Symbol_FLI1	Rummagene Transcription Factor Associations 2026	1.0	null
CALD1	Pathway Commons Protein-Protein Interactions	1.0	null
CALML5	Pathway Commons Protein-Protein Interactions	1.0	null
hsa-miR-1270	TargetScan Predicted Conserved microRNA Targets	1.0	1.45615
Peroxisome Biogenesis Disorder	DisGeNET Gene-Disease Associations	1.0	null
Compound-1a	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.72
cell part	GO Cellular Component Annotations 2015	1.0	null
GNAI3	Pathway Commons Protein-Protein Interactions	1.0	null
RCBTB1	Pathway Commons Protein-Protein Interactions	1.0	null
hsa-miR-1184	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
BL5475 (BRD1)	NURSA Protein Complexes	1.0	null
intracellular organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.042009
OAT	Pathway Commons Protein-Protein Interactions	1.0	null
Forced expiratory volume in 1 second (environmental tobacco smoke interaction)	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.539794
Cooley'S Anemia	DisGeNET Gene-Disease Associations	1.0	null
LETM2	Pathway Commons Protein-Protein Interactions	1.0	null
ACTB	Pathway Commons Protein-Protein Interactions	1.0	null
KRT10	Pathway Commons Protein-Protein Interactions	1.0	null
subcuneiform nucleus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.894557
a-FTO (78) (FTO)	NURSA Protein Complexes	1.0	null
PMC7397849-supp_gad.338681.120_Supplemental_Table_S3.xlsx-S3M_Peaks_YAP1MAMLD1_TEAD4-Unnamed_14_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
USF2	ENCODE Transcription Factor Targets	1.0	null
ALDH1B1	Pathway Commons Protein-Protein Interactions	1.0	null
GSE221327_5_v_11_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
rhombomere 11	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.52882
PGAM5	Pathway Commons Protein-Protein Interactions	1.0	null
RUNX2	ChEA Transcription Factor Targets	1.0	null
GSE218098,GSE218099_1_v_0_tcf19_human	RummaGEO Gene Perturbation Signatures	1.0	null
ERLIN2	Pathway Commons Protein-Protein Interactions	1.0	null
AMN 082	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.6
PMC11252405-41467_2024_50426_MOESM1_ESM.pdf-25-DNMT1_DNMT1	Rummagene Transcription Factor Associations 2026	1.0	null
PLOD3	Pathway Commons Protein-Protein Interactions	1.0	null
CBC581 (KDM5C)	NURSA Protein Complexes	1.0	null
Primary somatosensory area, lower limb	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.29174
H3F3A	Pathway Commons Protein-Protein Interactions	1.0	null
PSME3	Pathway Commons Protein-Protein Interactions	1.0	null
AHSA1	Pathway Commons Protein-Protein Interactions	1.0	null
MOLP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.880743
TUFM	Pathway Commons Protein-Protein Interactions	1.0	null
TUBB1	Pathway Commons Protein-Protein Interactions	1.0	null
Hoxd13	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	33.9364
GSE142210_4_v_8_panobinostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
T-47D	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.45426
ARR3	Pathway Commons Protein-Protein Interactions	1.0	null
HNRNPM	Pathway Commons Protein-Protein Interactions	1.0	null
NKX2-4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.0947
EMC-BAC-2	Sanger Dependency Map Cancer Cell Line Proteomics	1.0	1.83777
Gut	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.233
WRO cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.276
H3K9ac_mammary epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
gland	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
NCIN87_STOMACH	CCLE Cell Line Proteomics	1.0	4.68613
Lateral root primordium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.144
mantle zone of TSPaA	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.46626
SNRPD1	Pathway Commons Protein-Protein Interactions	1.0	null
PKP1	Pathway Commons Protein-Protein Interactions	1.0	null
A1207	CCLE Cell Line Gene CNV Profiles	1.0	1.40224
YY1-22570637-MALME-3M-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
PMC11161988-12906_2024_4523_MOESM3_ESM.pdf-72-SIX6_SIX6	Rummagene Transcription Factor Associations 2026	1.0	null
Synapse	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
PIK3R3	Pathway Commons Protein-Protein Interactions	1.0	null
TOP1	Pathway Commons Protein-Protein Interactions	1.0	null
Chronic Congestive Heart Failure	DisGeNET Gene-Disease Associations	1.0	null
Uterine Carcinosarcoma_UCS_TCGA-ND-A4WC-01A-21R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PYGL	Pathway Commons Protein-Protein Interactions	1.0	null
ETV5::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.055
Prdm15	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	27.8637
Acute Myeloid Leukemia_LAML_TCGA-AB-2814-03A-01T-0734-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Mesothelioma_MESO_TCGA-MQ-A6BR-01A-11R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE142210_2_v_7_panobinostat_human	RummaGEO Drug Perturbation Signatures	-1.0	null
H3K9me3_fibroblast of lung_hg19_3	ENCODE Histone Modification Site Profiles	1.0	null
PMC7397849-supp_gad.338681.120_Supplemental_Table_S3.xlsx-S3N_Peaks_YAP1FAM118B_TEAD4-Unnamed_11_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
BL2507 (TLK1)	NURSA Protein Complexes	1.0	null
EPI-1962-1 (PRKD2)	NURSA Protein Complexes	1.0	null
Supramolecular fiber	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
RPL7A	Pathway Commons Protein-Protein Interactions	1.0	null
(RS)-PPG	DeepCoverMOA Drug Mechanisms of Action	-1.0	-2.59
NEDD4	Pathway Commons Protein-Protein Interactions	1.0	null
TUBA3C	Pathway Commons Protein-Protein Interactions	1.0	null
RSU1	Pathway Commons Protein-Protein Interactions	1.0	null
EEF1A1P5	Pathway Commons Protein-Protein Interactions	1.0	null
gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05179
Flavopiridol	DeepCoverMOA Drug Mechanisms of Action	1.0	0.64
layer 1 of LPrP cortex	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.08139
RSL1D1	Pathway Commons Protein-Protein Interactions	1.0	null
Basimglurant	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.43
PRDM1_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCIH1573_LUNG	CCLE Cell Line Proteomics	1.0	4.42335
SF1	Pathway Commons Protein-Protein Interactions	1.0	null
Crus 2, granular layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.19615
MAP1B	Pathway Commons Protein-Protein Interactions	1.0	null
r10 part of the vestibular column	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.05317
GSE239844_4_v_5_crizotinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
CLINT1	Pathway Commons Protein-Protein Interactions	1.0	null
uterine cancer cell	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
CBC2152 (RFWD3)	NURSA Protein Complexes	1.0	null
JcP contribution to LTL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.06303
FAM65A	Pathway Commons Protein-Protein Interactions	1.0	null
cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.0415
CUL1	NURSA Protein-Protein Interactions	1.0	0.15278
PRDM14-20953172-ESCS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
GSE150055_0_v_2_melphalan_human	RummaGEO Drug Perturbation Signatures	1.0	null
CLTA	Pathway Commons Protein-Protein Interactions	1.0	null
QPCT	Pathway Commons Protein-Protein Interactions	1.0	null
intermediate stratum of r10BL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.13291
DCUN1D1	Pathway Commons Protein-Protein Interactions	1.0	null
Tranexamic acid	DeepCoverMOA Drug Mechanisms of Action	1.0	0.29
caudal division of IPC (area 39)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.5815
RANBP2	Pathway Commons Protein-Protein Interactions	1.0	null
HYOU1	Pathway Commons Protein-Protein Interactions	1.0	null
Orthostatic hypotension	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.569897
superficial stratum of r5Tr	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.47896
caudal portion of VFC (area 44)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.84333
hMPV_24Hour_18234263_GSE8961	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.03688
Actin, conserved site	InterPro Predicted Protein Domain Annotations	1.0	null
MRTO4	Pathway Commons Protein-Protein Interactions	1.0	null
RPL8	Pathway Commons Protein-Protein Interactions	1.0	null
ZFX_01_157	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	-1.0	-0.66942
Kidney Chromophobe_KICH_TCGA-KL-8334-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SU-DHL-6	COSMIC Cell Line Gene Mutation Profiles	1.0	null
ZNF217-24962896-MCF7-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
hsa-miR-3163	TargetScan Predicted Conserved microRNA Targets	1.0	0.219115
Abnormal Behavior	DisGeNET Gene-Phenotype Associations	1.0	null
PMC11772884-41421_2024_747_MOESM6_ESM.xlsx-8_DEGs_RUNX1-OE_vs_control-Gene_Symbol_RUNX1	Rummagene Transcription Factor Associations 2026	1.0	null
PMC9464213-41467_2022_33063_MOESM11_ESM.xlsx-BNC2_replicate2_proteins-gene_name_BNC2	Rummagene Transcription Factor Associations 2026	1.0	null
BL1739 (CARM1)	NURSA Protein Complexes	1.0	null
transporter complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.079704
NCIH292	DepMap CRISPR Gene Dependency	1.0	4.05232
GABARAPL1	Hub Proteins Protein-Protein Interactions	1.0	null
GATA2-19941826-K562-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
BCAS2	Pathway Commons Protein-Protein Interactions	1.0	null
GABARAPL1	Pathway Commons Protein-Protein Interactions	1.0	null
GSE193993_0_v_6_sstr2_human	RummaGEO Gene Perturbation Signatures	1.0	null
HERC2	Pathway Commons Protein-Protein Interactions	1.0	null
SC-543 (ESR1)	NURSA Protein Complexes	1.0	null
GSE169205_0_v_5_sirt5_human	RummaGEO Gene Perturbation Signatures	1.0	null
HCC38	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.90932
NDUFA5	Pathway Commons Protein-Protein Interactions	1.0	null
epithelial cell	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
AMG 487	DeepCoverMOA Drug Mechanisms of Action	1.0	0.4
AP3D1	Pathway Commons Protein-Protein Interactions	1.0	null
substantia innominata/basal nucleus, transitional part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.09783
Tirofiban	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.29
mantle zone of IC	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.19984
NCI-H2347	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09243
GSE219103,GSE219104_0_v_1_progesterone_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
GSE221327_1_v_0_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
SMARCB1	Pathway Commons Protein-Protein Interactions	1.0	null
endocrine gland	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
ZNF274	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.4429
BL1425 (FOXO1)	NURSA Protein Complexes	1.0	null
MRPS27	Pathway Commons Protein-Protein Interactions	1.0	null
purine ribonucleotide binding	GO Molecular Function Annotations 2015	1.0	null
RUVBL1	Pathway Commons Protein-Protein Interactions	1.0	null
PMC12271601-mmc2.xlsx-OUT_cells_03-Gene_Symbol_TCF23	Rummagene Transcription Factor Associations 2026	1.0	null
YTHDC2	Pathway Commons Protein-Protein Interactions	1.0	null
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
RPL11	Pathway Commons Protein-Protein Interactions	1.0	null
Tezacaftor	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.76
PMC7072578__F2	PFOCR Pathway Figure Associations 2024	1.0	null
GSE142210_2_v_6_panobinostat_human	RummaGEO Drug Perturbation Signatures	-1.0	null
non-membrane-bounded organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
CHAGOK1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.49062
MDA-MB-330	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19097
KYSE150	DepMap CRISPR Gene Dependency	1.0	4.732
Kidney renal clear cell carcinoma_KIRC_TCGA-A3-3374-01A-02R-1325-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Stage Iii Colorectal Cancer	DisGeNET Gene-Disease Associations	1.0	null
SLC16A1	Pathway Commons Protein-Protein Interactions	1.0	null
mantle zone of r4Tr	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.01466
septum (resp epith)	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	2.09859
catalytic complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.044384
YY1-22570637-MALME-3M-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
PMC11615365-41467_2024_54246_MOESM5_ESM.xlsx-RT112-Numb-KD_vs_Ctr-KD-geneSymbol_AR	Rummagene Transcription Factor Associations 2026	1.0	null
Integrin signalling pathway	PANTHER Pathways	1.0	null
PMC11923864-ADVS-12-2413713-s002.xlsx-Fe3O4_SiO2_NP_of_LTF_spike-in-Unnamed_0_LTF	Rummagene Transcription Factor Associations 2026	1.0	null
TUBA1C	Pathway Commons Protein-Protein Interactions	1.0	null
GSTO1	Pathway Commons Protein-Protein Interactions	1.0	null
integument	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
YLPM1	Pathway Commons Protein-Protein Interactions	1.0	null
a-CCND1 (Ab3) (CCND1)	NURSA Protein Complexes	1.0	null
F7	Pathway Commons Protein-Protein Interactions	1.0	null
Silodosin	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.66
KRT6C	Pathway Commons Protein-Protein Interactions	1.0	null
layer 2 of OCx	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.27626
Kidney renal papillary cell carcinoma_KIRP_TCGA-HE-A5NK-01A-11R-A26U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MTAP	Pathway Commons Protein-Protein Interactions	1.0	null
EPN1	Pathway Commons Protein-Protein Interactions	1.0	null
Epithelial Ovarian Cancer	DisGeNET Gene-Disease Associations	1.0	null
NDUFV2	Pathway Commons Protein-Protein Interactions	1.0	null
nucleoside binding	GO Molecular Function Annotations 2015	1.0	null
Chronic Idiopathic Urticaria	DisGeNET Gene-Disease Associations	1.0	null
animal	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
SK-MES-1	COSMIC Cell Line Gene CNV Profiles	1.0	2.93899
JUN_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
rhombomere 10	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.06195
Ovarian Failure, Premature	DisGeNET Gene-Disease Associations	1.0	null
intermediate stratum of PcPD	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.14431
DHRS2	Pathway Commons Protein-Protein Interactions	1.0	null
Lung adenocarcinoma_LUAD_TCGA-50-6590-01A-12R-1858-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC11686977-12967_2024_5960_MOESM9_ESM.xlsx-Sheet1-Supplementary_Table_4_The_co-precipitated_proteins_of_the_four_RORA_promoter_probes_P1_P2_P3_and_P4_and_beads_RORA	Rummagene Transcription Factor Associations 2026	1.0	null
TWISTNB	Pathway Commons Protein-Protein Interactions	1.0	null
FOXA3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.227
RNH1	Pathway Commons Protein-Protein Interactions	1.0	null
IPO4	Pathway Commons Protein-Protein Interactions	1.0	null
Cadmium Chloride	CTD Gene-Chemical Interactions	1.0	null
DDX6	Pathway Commons Protein-Protein Interactions	1.0	null
PSMA5	Pathway Commons Protein-Protein Interactions	1.0	null
r3 part of spinal trigeminal sensory column, oral part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.16457
PRDX2	Pathway Commons Protein-Protein Interactions	1.0	null
CA2 field, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.60571
H3K9ac_astrocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
SET	Pathway Commons Protein-Protein Interactions	1.0	null
ECH1	Pathway Commons Protein-Protein Interactions	1.0	null
DPY30	Pathway Commons Protein-Protein Interactions	1.0	null
JUND	ENCODE Transcription Factor Targets	1.0	null
r1 part of lateral pontine nuclei	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.05678
PMC8143797-elife-62857-fig4-data2.xlsx-TAZ-CAMTA1_ChIP_RNAseq_merged-Gene_CAMTA1	Rummagene Transcription Factor Associations 2026	1.0	null
RERF-LC-OK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19097
PMC7397849-supp_gad.338681.120_Supplemental_Table_S3.xlsx-S3L_Peaks_2SA-YAP1_TEAD4-Unnamed_11_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
NCI-H1573	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.928776
HSPA5	Pathway Commons Protein-Protein Interactions	1.0	null
TE9	CCLE Cell Line Gene CNV Profiles	-1.0	-2.54116
PAX6	ChEA Transcription Factor Targets	1.0	null
ALYREF	Pathway Commons Protein-Protein Interactions	1.0	null
intracellular part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
CAD	Pathway Commons Protein-Protein Interactions	1.0	null
GSE223893_11_v_10_setd2_human	RummaGEO Gene Perturbation Signatures	1.0	null
Diastolic blood pressure	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.752288
superficial stratum of CoPV	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.99149
Manchette	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.939
Rislenemdaz	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.24
KCTD3	Pathway Commons Protein-Protein Interactions	1.0	null
GSE182179_2_v_3_kdsr_human	RummaGEO Gene Perturbation Signatures	1.0	null
BML-277	DeepCoverMOA Drug Mechanisms of Action	1.0	0.44
mantle zone of r7Ve	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.06421
MAP1LC3B	Hub Proteins Protein-Protein Interactions	1.0	null
GNB2	Pathway Commons Protein-Protein Interactions	1.0	null
RAC2	Pathway Commons Protein-Protein Interactions	1.0	null
PRDX3	Pathway Commons Protein-Protein Interactions	1.0	null
sublayer 6b of PCx	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.52353
SW 1116	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.83002
ARHGEF1	Pathway Commons Protein-Protein Interactions	1.0	null
KRT80	Pathway Commons Protein-Protein Interactions	1.0	null
PMC12753515-Table2.XLSX-G5-specific_down_only_top_500-EGR2_EGR2	Rummagene Transcription Factor Associations 2026	1.0	null
Cerebellar nuclei	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.01282
Prostate adenocarcinoma_PRAD_TCGA-J4-A6G3-01A-11R-A311-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SAFB	Pathway Commons Protein-Protein Interactions	1.0	null
Six3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	15.0777
STK4	Pathway Commons Protein-Protein Interactions	1.0	null
Siponimod	DeepCoverMOA Drug Mechanisms of Action	1.0	0.48
cell projection	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.059177
collicular (rostral) midbrain tectum	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.4728
PRPF19	Pathway Commons Protein-Protein Interactions	1.0	null
PMC10746608-427_2023_709_MOESM5_ESM.xlsx-SOX2_partners-SOX2_known_protein_partners_according_to_BioGrid_SOX2	Rummagene Transcription Factor Associations 2026	1.0	null
BL482 (MAP3K7IP3)	NURSA Protein Complexes	1.0	null
extracellular vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
RPMI 8226	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.45426
SOX9-26525672-CHIP-SEQ-HEART-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
LIN7A	Pathway Commons Protein-Protein Interactions	1.0	null
EIF4H	Pathway Commons Protein-Protein Interactions	1.0	null
ZNF510	Pathway Commons Protein-Protein Interactions	1.0	null
MAPRE1	Pathway Commons Protein-Protein Interactions	1.0	null
ZJ 43	DeepCoverMOA Drug Mechanisms of Action	-1.0	-1.37
PDAP1	Pathway Commons Protein-Protein Interactions	1.0	null
Central lobule	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.09815
Inferior colliculus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.26831
TPR	Pathway Commons Protein-Protein Interactions	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-FT-A3EE-01A-11R-A206-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
KRT77	Pathway Commons Protein-Protein Interactions	1.0	null
PMC11631763-41588_2024_1975_MOESM4_ESM.xlsx-ST12_MTAG-DCM_novelty_loci_LVHF-Unnamed_2_KLF6	Rummagene Transcription Factor Associations 2026	1.0	null
LMNA	Pathway Commons Protein-Protein Interactions	1.0	null
PIK3R1	Pathway Commons Protein-Protein Interactions	1.0	null
HSP90B1	Pathway Commons Protein-Protein Interactions	1.0	null
PSMA2	Pathway Commons Protein-Protein Interactions	1.0	null
Supplemental somatosensory area	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.08227
PMC7611259-EMS114661-supplement-Supplementary_Tables.xlsx-ST18-Unnamed_10_ST18	Rummagene Transcription Factor Associations 2026	1.0	null
WDR11	Pathway Commons Protein-Protein Interactions	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-DU-7300-01A-21R-2090-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hsa-miR-3176	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
Gastrointestinal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.446
NR1I2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.8705
496100480_HIP_no dementia_TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.45911
ILF3	Pathway Commons Protein-Protein Interactions	1.0	null
Neurokinin A	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.37
BL2854 (MED18)	NURSA Protein Complexes	1.0	null
FOS_MCF 10A_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
JAK2_mutant_40_GSE11003	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	-1.0	-1.77864
SRPX	Pathway Commons Protein-Protein Interactions	1.0	null
PCNA	Pathway Commons Protein-Protein Interactions	1.0	null
BL4508 (SMARCAD1)	NURSA Protein Complexes	1.0	null
GSE223893_11_v_9_setd2_human	RummaGEO Gene Perturbation Signatures	1.0	null
CHEMBL2041153	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.63
CASKI	DepMap CRISPR Gene Dependency	1.0	2.88742
HNRNPH3	Pathway Commons Protein-Protein Interactions	1.0	null
CEBPB_IMR-90_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MAP1LC3B	Pathway Commons Protein-Protein Interactions	1.0	null
ARL2	Pathway Commons Protein-Protein Interactions	1.0	null
HADHA	Pathway Commons Protein-Protein Interactions	1.0	null
EPI-2046-1 (CTNNA2)	NURSA Protein Complexes	1.0	null
CEBPB	ENCODE Transcription Factor Targets	1.0	null
GSE154337_0_v_1_temozolomide_human	RummaGEO Drug Perturbation Signatures	1.0	null
TUBB6	Pathway Commons Protein-Protein Interactions	1.0	null
HCC1319	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.67481
GSE153871_0_v_2_cytarabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE233679_6_v_2_nicotinamide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
RAD21	ENCODE Transcription Factor Targets	1.0	null
59m	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.019
vestibular nuclei, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.878
mantle zone of CoPV	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.33201
SAG	Pathway Commons Protein-Protein Interactions	1.0	null
STIP1	Pathway Commons Protein-Protein Interactions	1.0	null
GNL3	Pathway Commons Protein-Protein Interactions	1.0	null
Guanidinoacetate methyltransferase deficiency	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.355
Reflex, Abnormal	CTD Gene-Disease Associations	1.0	1.25899
XPNPEP3	Pathway Commons Protein-Protein Interactions	1.0	null
posterior part of Int	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.52019
JUND	JASPAR Predicted Transcription Factor Targets	1.0	null
MELJUSO_SKIN	CCLE Cell Line Proteomics	1.0	2.46581
PMC12179525-mmc1.xlsx-Group_HNF4A_vs_Null_sign-Supplemental_Table_S1_Differentially_expressed_genes_in_HNF4A-transduced_cells_vs_Null_HNF4A	Rummagene Transcription Factor Associations 2026	1.0	null
hur	GeneRIF Biological Term Annotations	1.0	null
purine ribonucleoside binding	GO Molecular Function Annotations 2015	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-G3-A7M6-01A-11R-A33R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RBM15B	Pathway Commons Protein-Protein Interactions	1.0	null
ab_N_YW (RFWD3)	NURSA Protein Complexes	1.0	null
MSH6	Pathway Commons Protein-Protein Interactions	1.0	null
FMK	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.31
VAPB	Pathway Commons Protein-Protein Interactions	1.0	null
GUCY2F	Pathway Commons Protein-Protein Interactions	1.0	null
Perturb_3687_KD_RARRES2_SRP287866	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.80131
KARS	Pathway Commons Protein-Protein Interactions	1.0	null
VZ in caudal hippocampal proper	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-2.43366
HBL-100	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.879714
ko143	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.32
PRPH	Pathway Commons Protein-Protein Interactions	1.0	null
C8orf33	Pathway Commons Protein-Protein Interactions	1.0	null
external granular (germinal) layer of lower rhombic lip	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.72142
CAMK2D	Pathway Commons Protein-Protein Interactions	1.0	null
DHX30	Pathway Commons Protein-Protein Interactions	1.0	null
Primary somatosensory area, lower limb, layer 6a	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.68386
central nucleus of the inferior colliculus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.72053
lateral terminal nucleus of the accessory optic tract, ventral part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.99149
HCC1493	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.933945
TAF15	Pathway Commons Protein-Protein Interactions	1.0	null
KP2_PANCREAS	CCLE Cell Line Proteomics	1.0	2.82772
H3K9me3_erythroblast_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
HNRNPR	Pathway Commons Protein-Protein Interactions	1.0	null
hsa-miR-555	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
Lung adenocarcinoma_LUAD_TCGA-44-8117-01A-11R-2241-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RAB11B	Pathway Commons Protein-Protein Interactions	1.0	null
ATP1A1	Pathway Commons Protein-Protein Interactions	1.0	null
RPL29	Pathway Commons Protein-Protein Interactions	1.0	null
central gray of the pons, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	2.54596
superficial stratum of r3Tr	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.16424
BL6755 (PHF8)	NURSA Protein Complexes	1.0	null
peripeduncular nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.13064
A388	COSMIC Cell Line Gene Mutation Profiles	1.0	null
DPF2	Pathway Commons Protein-Protein Interactions	1.0	null
BL436 (NCOA2)	NURSA Protein Complexes	1.0	null
Pancreatic adenocarcinoma_PAAD_TCGA-HZ-8005-01A-11R-2204-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
STXBP5	Pathway Commons Protein-Protein Interactions	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-S9-A7R7-01A-11R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE238018_3_v_4_mxra8_human	RummaGEO Gene Perturbation Signatures	1.0	null
FOXP2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.8446
SNU-1040	COSMIC Cell Line Gene Mutation Profiles	1.0	null
ARF1	Pathway Commons Protein-Protein Interactions	1.0	null
SMARCA4	ChEA Transcription Factor Targets	1.0	null
IQGAP1	Pathway Commons Protein-Protein Interactions	1.0	null
TEAD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.0624
KRT16	Pathway Commons Protein-Protein Interactions	1.0	null
UMC-11	Sanger Dependency Map Cancer Cell Line Proteomics	-1.0	-2.79344
SEC61B	Pathway Commons Protein-Protein Interactions	1.0	null
hsa-miR-4691-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
KRT2	Pathway Commons Protein-Protein Interactions	1.0	null
Asthma	DisGeNET Gene-Disease Associations	1.0	null
Hypertrophic cardiomyopathy (MTAG)	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.839794
RARA::RXRG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.2848
Pirenzepine	DeepCoverMOA Drug Mechanisms of Action	1.0	0.45
EIF2AK2	Pathway Commons Protein-Protein Interactions	1.0	null
FOXO1::ELK3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.4483
LOUNH91	CCLE Cell Line Gene CNV Profiles	1.0	1.37427
LIMK1	NURSA Protein-Protein Interactions	1.0	0.15278
NR3C1_ECC-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
LRBA	Pathway Commons Protein-Protein Interactions	1.0	null
MCM6	Pathway Commons Protein-Protein Interactions	1.0	null
ALDOC	Pathway Commons Protein-Protein Interactions	1.0	null
medial preoptic nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.20978
CAPZA1	Pathway Commons Protein-Protein Interactions	1.0	null
polysensory temporal cortex (area 22p)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	2.66544
BL9548 (TNFAIP3)	NURSA Protein Complexes	1.0	null
Sitagliptin	DeepCoverMOA Drug Mechanisms of Action	1.0	0.23
PMC7397849-supp_gad.338681.120_Supplemental_Table_S1.xlsx-S1L_Shared_genes_3way_overlap-Suppl_Table_S1L_Shared_genes_between_YAP1-MAMLD1_YAP1-FAM118B_YAP1-TFE3_in_vitro_human_samples_TFE3	Rummagene Transcription Factor Associations 2026	1.0	null
Carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.377
HLA-B	Pathway Commons Protein-Protein Interactions	1.0	null
BCKDHA	Pathway Commons Protein-Protein Interactions	1.0	null
SPIN1	Pathway Commons Protein-Protein Interactions	1.0	null
PMC9160255-41467_2022_30710_MOESM4_ESM.xlsx-AR_specific_regulated_genes-SYMBOL_1_AR	Rummagene Transcription Factor Associations 2026	1.0	null
FLNC	Pathway Commons Protein-Protein Interactions	1.0	null
GSE73628_8_v_2_igf1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
intermediate stratum of SC	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.89656
PMC7397849-supp_gad.338681.120_Supplemental_Table_S3.xlsx-S3K_Peaks_wtYAP1_TEAD4-Unnamed_11_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
CHTOP	Pathway Commons Protein-Protein Interactions	1.0	null
dorsofrontal pretectal nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.14656
OAW28	CCLE Cell Line Gene CNV Profiles	-1.0	-1.54205
hsa-miR-142-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
neuron projection morphogenesis	GO Biological Process Annotations 2025	1.0	null
KIDINS220	Pathway Commons Protein-Protein Interactions	1.0	null
anion binding	GO Molecular Function Annotations 2015	1.0	null
USF2_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hsa-miR-3152-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
HIST1H2AA	Pathway Commons Protein-Protein Interactions	1.0	null
S100A11	Pathway Commons Protein-Protein Interactions	1.0	null
KCNH2	Pathway Commons Protein-Protein Interactions	1.0	null
intracellular non-membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
GSE184356_3_v_0_tfam_human	RummaGEO Gene Perturbation Signatures	-1.0	null
ACLY	Pathway Commons Protein-Protein Interactions	1.0	null
zona incerta, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.49136
ENAH	Pathway Commons Protein-Protein Interactions	1.0	null
ATP5L	Pathway Commons Protein-Protein Interactions	1.0	null
Large granular lymphocyte	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.15
PHB2	Pathway Commons Protein-Protein Interactions	1.0	null
HEYA8_OVARY	CCLE Cell Line Proteomics	1.0	7.27736
WDR77	Pathway Commons Protein-Protein Interactions	1.0	null
PMC8104016-hcg-12-e002353-s006.xlsx-mTHP-1-LPS_Prom-Distal-RefSeq_Name_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
Bromopyruvic acid	DeepCoverMOA Drug Mechanisms of Action	-1.0	-1.37
binding	GO Molecular Function Annotations 2015	1.0	null
CSTB	Pathway Commons Protein-Protein Interactions	1.0	null
HOP-62	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Mutation Profiles	1.0	null
Hmx2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	39.2789
Sox1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	37.4172
SCC-3	Sanger Dependency Map Cancer Cell Line Proteomics	-1.0	-2.02984
PF 04447943	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.59
RPL10L	Pathway Commons Protein-Protein Interactions	1.0	null
CREB3L4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.5111
MRPS26	Pathway Commons Protein-Protein Interactions	1.0	null
RPS13	Pathway Commons Protein-Protein Interactions	1.0	null
CLIC2	Pathway Commons Protein-Protein Interactions	1.0	null
SMARCC2	Pathway Commons Protein-Protein Interactions	1.0	null
FLI1::DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.002
FOXP4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.2383
A3-KAW	Sanger Dependency Map Cancer Cell Line Proteomics	-1.0	-2.74916
Piriform area	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.05982
Microspherocytosis	DisGeNET Gene-Disease Associations	1.0	null
external cortical nucleus of inferior colliculus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.23623
CBC2031 (ZMYND8)	NURSA Protein Complexes	1.0	null
alar plate of m1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.47795
CCT8	Pathway Commons Protein-Protein Interactions	1.0	null
SW1573	CCLE Cell Line Gene CNV Profiles	1.0	1.39807
GSE164463_2_v_1_pax6_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
UACC-62	Sanger Dependency Map Cancer Cell Line Proteomics	-1.0	-2.14948
RFC5	Pathway Commons Protein-Protein Interactions	1.0	null
B-lymphocyte	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.133
Primary visual area, layer 5	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.1376
VZ in caudal subicular cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.70885
S462	DepMap CRISPR Gene Dependency	1.0	7.48048
PMC7373278-pone.0236187.s013.xlsx-MCF7_genes_overexpressed_in_AR-Gene_ID_AR	Rummagene Transcription Factor Associations 2026	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-66-2744-01A-01R-0980-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BL9749 (SIK2)	NURSA Protein Complexes	1.0	null
Adult Liver Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
TMC1	Pathway Commons Protein-Protein Interactions	1.0	null
SRSF11	Pathway Commons Protein-Protein Interactions	1.0	null
GSE158743_1_v_2_nfkbia_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GTF3C3	Pathway Commons Protein-Protein Interactions	1.0	null
KHSRP	Pathway Commons Protein-Protein Interactions	1.0	null
GSE153871_5_v_2_cytarabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
duodenum	HPA Tissue Protein Expression Profiles	1.0	0.905838
NCIH2347	CCLE Cell Line Gene CNV Profiles	1.0	1.54393
root	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.294939
TP53-22127205-IMR90-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
NCIH209	CCLE Cell Line Gene CNV Profiles	-1.0	-1.63857
urogenital system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
nucleus of Barrington	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.08513
ventrolateral part of alar m1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.56415
RCOR1	ENCODE Transcription Factor Targets	1.0	null
GSE196540,GSE196542_2_v_0_dnmt3a_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Superior colliculus, motor related	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.16521
KNS60	CCLE Cell Line Gene CNV Profiles	1.0	2.00767
intracellular organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
GSE112202_5_v_2_digoxin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
CUL1	Pathway Commons Protein-Protein Interactions	1.0	null
VIIAf	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.37521
PMC11073998-41375_2024_2235_MOESM9_ESM.xlsx-THP1_phosphoproteome-Unnamed_2_GLI2	Rummagene Transcription Factor Associations 2026	1.0	null
EHMT2_KD_GDS4800_315_human_MDA-MB231	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
CEBPD	ChEA Transcription Factor Targets	1.0	null
GSE195503_3_v_2_progesterone_human	RummaGEO Drug Perturbation Signatures	-1.0	null
hepatocellular carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.477909
SEPT9	Pathway Commons Protein-Protein Interactions	1.0	null
BL2500 (DOT1L)	NURSA Protein Complexes	1.0	null
LOU-NH91	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29557
KRT14	Pathway Commons Protein-Protein Interactions	1.0	null
Tizanidine	DeepCoverMOA Drug Mechanisms of Action	1.0	0.4
Bladder Urothelial Carcinoma_BLCA_TCGA-FD-A5C1-01A-11R-A28M-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Veliparib	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.5
RBBP5	ENCODE Transcription Factor Targets	1.0	null
GYG1	Pathway Commons Protein-Protein Interactions	1.0	null
layer 2 of PCx	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.79477
Prostate adenocarcinoma_PRAD_TCGA-CH-5767-11B-01R-1789-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
FNIP1	Pathway Commons Protein-Protein Interactions	1.0	null
FYN	Pathway Commons Protein-Protein Interactions	1.0	null
CTNNA1	Pathway Commons Protein-Protein Interactions	1.0	null
MYH2	Pathway Commons Protein-Protein Interactions	1.0	null
GSE193258,GSE193259_2_v_8_osimertinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
PMC10794847-mmc2.xlsx-PBRM1_KD_up-Table_S1_Differentially_expressed_genes_with_PBRM1_knockdown_in_the_progenitor_state_Related_to_Figure_1_AR	Rummagene Transcription Factor Associations 2026	1.0	null
Rectum adenocarcinoma_READ_TCGA-AG-3902-01A-01R-A32Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
H2AFZ_skeletal muscle myoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
inferior occipital gyrus, left, superior bank of gyrus	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.00747
SHC2	Pathway Commons Protein-Protein Interactions	1.0	null
PMC4450212__F4	PFOCR Pathway Figure Associations 2023	1.0	null
CEBPB-22108803-LS180-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
NKTR	Pathway Commons Protein-Protein Interactions	1.0	null
Glutamatergic synapse	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
STAT4	MotifMap Predicted Transcription Factor Targets	1.0	null
GSE195503_3_v_0_progesterone_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE151090_0_v_1_verteporfin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
CYP4Z2P	Pathway Commons Protein-Protein Interactions	1.0	null
KYSE-70	Sanger Dependency Map Cancer Cell Line Proteomics	-1.0	-2.44189
NR3C1-27076634-BEAS2B-HUMAN-LUNG-INFLAMMATION	ChEA Transcription Factor Targets 2022	1.0	null
ZCCHC11	Pathway Commons Protein-Protein Interactions	1.0	null
SP1	Pathway Commons Protein-Protein Interactions	1.0	null
LLGL1	Pathway Commons Protein-Protein Interactions	1.0	null
TUBB4B	Pathway Commons Protein-Protein Interactions	1.0	null
PFKP	Pathway Commons Protein-Protein Interactions	1.0	null
PMC12069319-Table1.xlsx-OCAB_p34_BirA-Gene_POU2AF1	Rummagene Transcription Factor Associations 2026	1.0	null
GSE233679_14_v_8_nicotinamide_human	RummaGEO Drug Perturbation Signatures	1.0	null
PRRC2C	Pathway Commons Protein-Protein Interactions	1.0	null
ATG4B	Pathway Commons Protein-Protein Interactions	1.0	null
PMC8995879-Table_1.xlsx-exome_variants_MAF_0_01-Gencode_34_hugoSymbol_MAF	Rummagene Transcription Factor Associations 2026	1.0	null
Cortical amygdalar area, anterior part, layer 2	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.68939
NP5	DepMap CRISPR Gene Dependency	1.0	3.0457
ACOT13	Pathway Commons Protein-Protein Interactions	1.0	null
Spinal nucleus of the trigeminal, oral part, middle dorsomedial part, ventral zone	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.57035
IRGQ	Pathway Commons Protein-Protein Interactions	1.0	null
PFKL	Pathway Commons Protein-Protein Interactions	1.0	null
SLC25A6	Pathway Commons Protein-Protein Interactions	1.0	null
Parasitemia	DisGeNET Gene-Disease Associations	1.0	null
SOX2-22085726-NPCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
HS-Sultan cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.667
PRDM1	ENCODE Transcription Factor Targets	1.0	null
Baraitser-Winter syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.365
VCL	Pathway Commons Protein-Protein Interactions	1.0	null
chaperonin-containing T-complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.941
Breast disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.144
C11orf84	Pathway Commons Protein-Protein Interactions	1.0	null
corpus callosum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.996183
CARM1	Pathway Commons Protein-Protein Interactions	1.0	null
RPLP1	Pathway Commons Protein-Protein Interactions	1.0	null
FOXK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.785
Perturb_13048_KO_Il33_SRP259135	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	1.84161
GSE154577_2_v_12_plagl1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
H3K4me3_HEK293_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
PMC12749419-41598_2025_28826_MOESM3_ESM.xlsx-RFT_iBody3_hexaplicate-Genes_MBD1	Rummagene Transcription Factor Associations 2026	1.0	null
MOB1A	Pathway Commons Protein-Protein Interactions	1.0	null
BL2229 (FIGNL1)	NURSA Protein Complexes	1.0	null
LUF-5735	DeepCoverMOA Drug Mechanisms of Action	1.0	0.28
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-4712-01A-01R-1503-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Sildenafil	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.73
ACTA1	Hub Proteins Protein-Protein Interactions	1.0	null
EFO27	DepMap CRISPR Gene Dependency	1.0	2.24342
r3 roof plate	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.07047
RMG-I	COSMIC Cell Line Gene Mutation Profiles	1.0	null
MARCKS	Pathway Commons Protein-Protein Interactions	1.0	null
Nr1h3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	31.1732
Lung squamous cell carcinoma_LUSC_TCGA-56-8201-01A-11R-2247-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lateral septal nucleus, caudal (caudodorsal) part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.66738
extracellular space	GO Cellular Component Annotations 2015	1.0	null
FLI1::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.9648
SUMO2	Pathway Commons Protein-Protein Interactions	1.0	null
PMC12069319-Table1.xlsx-OCAB_WT_BirA-Gene_POU2AF1	Rummagene Transcription Factor Associations 2026	1.0	null
DHX9	Pathway Commons Protein-Protein Interactions	1.0	null
RBM4B	Pathway Commons Protein-Protein Interactions	1.0	null
GF1B-26923725-CHIP-SEQ-HPCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
PMC7415402-oncotarget-11-2995-s004.xlsx-EWS-FLI1_Type_2_vs_Type_3-Gene_Symbol_FLI1	Rummagene Transcription Factor Associations 2026	1.0	null
UBF1/2-26484160-CHIP-SEQ-FIBROBLAST-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
GSE235701,GSE261434_0_v_3_enasidenib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
HCC630	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.957856
CHD4	Pathway Commons Protein-Protein Interactions	1.0	null
RPS10	Pathway Commons Protein-Protein Interactions	1.0	null
BL2152 (NEK7)	NURSA Protein Complexes	1.0	null
NDUFA4	Pathway Commons Protein-Protein Interactions	1.0	null
EIF4B	Pathway Commons Protein-Protein Interactions	1.0	null
Adrenocortical carcinoma_ACC_TCGA-OR-A5J8-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Neuron projection	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
DENND3	Pathway Commons Protein-Protein Interactions	1.0	null
ficolin-1-rich granule lumen	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.571
SK-MEL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28896
CUL3	Pathway Commons Protein-Protein Interactions	1.0	null
adult retina	HPM Cell Type and Tissue Protein Expression Profiles	-1.0	-1.17459
Progressive Pseudorheumatoid Dysplasia	DisGeNET Gene-Disease Associations	1.0	null
Pheochromocytoma and Paraganglioma_PCPG_TCGA-SQ-A6I4-01A-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RCOR1_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-4699-01A-01R-1277-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RBM34	Pathway Commons Protein-Protein Interactions	1.0	null
EPI-1550-1 (SRC)	NURSA Protein Complexes	1.0	null
TUBA1B	Pathway Commons Protein-Protein Interactions	1.0	null
Supramolecular polymer	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
Overweight And Obesity	DisGeNET Gene-Disease Associations	1.0	null
HIST1H2BO	Pathway Commons Protein-Protein Interactions	1.0	null
RPL23	Pathway Commons Protein-Protein Interactions	1.0	null
CDK8_knockdown_163_GSE38061	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	1.0	0.768628
ARG1	Pathway Commons Protein-Protein Interactions	1.0	null
hypoglossal nucleus, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.826602
Primary somatosensory area, upper limb, layer 2/3	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.08913
CNN2	Pathway Commons Protein-Protein Interactions	1.0	null
prepositus hypoglossal nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.18811
ACTA2	Pathway Commons Protein-Protein Interactions	1.0	null
FOSB::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.1761
GSE245270_1_v_4_isoproterenol_human	RummaGEO Drug Perturbation Signatures	-1.0	null
NEK9	Pathway Commons Protein-Protein Interactions	1.0	null
liver	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
CAPNS1	Pathway Commons Protein-Protein Interactions	1.0	null
MNX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.5848
lateral hypothalamic area, tuberal region, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.02379
ETV2::DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.7353
Kidney Chromophobe_KICH_TCGA-KO-8415-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RPS4X	Pathway Commons Protein-Protein Interactions	1.0	null
FOSL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.3668
COLO 829	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.906106
ARPC5L	Pathway Commons Protein-Protein Interactions	1.0	null
496100384_HIP_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.46151
Congestive Heart Failure	DisGeNET Gene-Disease Associations	1.0	null
Root cap	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.08
VIIB	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.897208
DDX47	Pathway Commons Protein-Protein Interactions	1.0	null
Lung adenocarcinoma_LUAD_TCGA-64-5815-01A-01R-1628-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Dorsal claustrum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.941846
Prostate adenocarcinoma_PRAD_TCGA-KK-A6DY-01A-12R-A311-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ventricular (matrix) zone of pons	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.11881
RERF-GC-1B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.48259
POLR2A_H54_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Stage Iia Colon Cancer Ajcc V8	DisGeNET Gene-Disease Associations	1.0	null
PMC9859043-elife-78421-supp9.xlsx-LHX8_P-Gene_symbol_LHX8	Rummagene Transcription Factor Associations 2026	1.0	null
ACADM	Pathway Commons Protein-Protein Interactions	1.0	null
KRT6A	Pathway Commons Protein-Protein Interactions	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-22-5480-01A-01R-1635-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE158834_7_v_8_palmitic acid_human	RummaGEO Drug Perturbation Signatures	1.0	null
RAD21_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GSE219274,GSE219276_0_v_1_doxorubicin_human	RummaGEO Drug Perturbation Signatures	1.0	null
Tasimelteon	DeepCoverMOA Drug Mechanisms of Action	1.0	0.23
DDB1	Pathway Commons Protein-Protein Interactions	1.0	null
Geniculate group, dorsal thalamus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.08139
hsa-miR-4803	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
BL8271 (VPS4B)	NURSA Protein Complexes	1.0	null
STRBP	Pathway Commons Protein-Protein Interactions	1.0	null
Cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.527
IV, left, lateral hemisphere	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.79886
PMC10020087-41388_2023_2602_MOESM3_ESM.xlsx-MDAMB231_KD-Gene_Name_AR	Rummagene Transcription Factor Associations 2026	1.0	null
EIF2AK4	Pathway Commons Protein-Protein Interactions	1.0	null
intermediate stratum of IC	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.7229
preoptic	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-0.958391
CACYBP	Pathway Commons Protein-Protein Interactions	1.0	null
RNMT	Pathway Commons Protein-Protein Interactions	1.0	null
NOC3L	Pathway Commons Protein-Protein Interactions	1.0	null
Large intestine cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.137
MZ2-MEL	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BL3028 (HIST4H4)	NURSA Protein Complexes	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-33-4533-01A-01R-1201-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
A 438079	DeepCoverMOA Drug Mechanisms of Action	1.0	0.45
BATF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.5773
STRAP	Pathway Commons Protein-Protein Interactions	1.0	null
deep white layer of SC	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.09558
outer CP in medial temporal-occipital cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.00101
AP2A1	Pathway Commons Protein-Protein Interactions	1.0	null
ANXA7	Pathway Commons Protein-Protein Interactions	1.0	null
PMC12271601-mmc2.xlsx-OUT_cells_02-Gene_Symbol_TCF23	Rummagene Transcription Factor Associations 2026	1.0	null
ANKFY1	Pathway Commons Protein-Protein Interactions	1.0	null
GSE235587_2_v_1_mitoxantrone_human	RummaGEO Drug Perturbation Signatures	1.0	null
PLEC	Pathway Commons Protein-Protein Interactions	1.0	null
H3K4me2_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
HS-294T cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.958
Brain Lower Grade Glioma_LGG_TCGA-HT-8110-01A-11R-2404-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GNE-9605	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.68
SW1271	CCLE Cell Line Gene CNV Profiles	1.0	1.34441
HX 531	DeepCoverMOA Drug Mechanisms of Action	-1.0	-2.16
GSE153871_5_v_3_cytarabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
Multiple synapse bouton, contacting single dendrite	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.542
D-3263	DeepCoverMOA Drug Mechanisms of Action	1.0	0.26
Superior colliculus, motor related, deep gray layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.30425
mantle zone of r10Ve	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.05109
SNAP23	Pathway Commons Protein-Protein Interactions	1.0	null
CBC22 (MLST8)	NURSA Protein Complexes	1.0	null
ENO1	Pathway Commons Protein-Protein Interactions	1.0	null
RRP1	Pathway Commons Protein-Protein Interactions	1.0	null
GSE118816_0_v_3_myo1c_human	RummaGEO Gene Perturbation Signatures	1.0	null
cellular_component	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
BL2418 (UBAP2L)	NURSA Protein Complexes	1.0	null
SERPINH1	Pathway Commons Protein-Protein Interactions	1.0	null
NCI-H2023	COSMIC Cell Line Gene CNV Profiles	1.0	2.93899
STXBP3	Pathway Commons Protein-Protein Interactions	1.0	null
GRWD1	Pathway Commons Protein-Protein Interactions	1.0	null
MDH2	Pathway Commons Protein-Protein Interactions	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-G9-6348-01A-11R-1789-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RAP1B	Pathway Commons Protein-Protein Interactions	1.0	null
HCC515	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.28928
NR2C2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.6147
organelle	GO Cellular Component Annotations 2015	1.0	null
SC-8002 (ESR1)	NURSA Protein Complexes	1.0	null
AN3-CA	COSMIC Cell Line Gene Mutation Profiles	1.0	null
WBP4	Pathway Commons Protein-Protein Interactions	1.0	null
PMC10117100-msphere.00056-23-s0008.xlsx-2B-Supplementary_Table_S2B_mRNAseq_analysis_genes_significantely_downregulated_upon_E2F4-5_knockdown_in_38HK_E2F4	Rummagene Transcription Factor Associations 2026	1.0	null
GSE182185_0_v_1_pstk_human	RummaGEO Gene Perturbation Signatures	1.0	null
ATG16L1	Pathway Commons Protein-Protein Interactions	1.0	null
BL2227 (FIGNL1)	NURSA Protein Complexes	1.0	null
BMP2K	Pathway Commons Protein-Protein Interactions	1.0	null
Urogenital Abnormalities	CTD Gene-Disease Associations	1.0	1.35991
RAB11FIP5	Pathway Commons Protein-Protein Interactions	1.0	null
ALB	Pathway Commons Protein-Protein Interactions	1.0	null
Renal Cell Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
Mental Deterioration	DisGeNET Gene-Phenotype Associations	1.0	null
hsa-miR-590-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
DYNC1H1	Pathway Commons Protein-Protein Interactions	1.0	null
CALM1	Pathway Commons Protein-Protein Interactions	1.0	null
MRPS14	Pathway Commons Protein-Protein Interactions	1.0	null
PRMT1	Pathway Commons Protein-Protein Interactions	1.0	null
Perturb_12629_KD_CYGB_SRP388176	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.32953
EXOSC1	Pathway Commons Protein-Protein Interactions	1.0	null
HNRNPL	Pathway Commons Protein-Protein Interactions	1.0	null
FER	Pathway Commons Protein-Protein Interactions	1.0	null
BL2434 (UBA3)	NURSA Protein Complexes	1.0	null
U2AF1	Pathway Commons Protein-Protein Interactions	1.0	null
TP63	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.9817
HDAC1	ENCODE Transcription Factor Targets	1.0	null
KRT76	Pathway Commons Protein-Protein Interactions	1.0	null
BL7201 (EPS8L2)	NURSA Protein Complexes	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-ED-A7PX-01A-51R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
III, left, paravermis	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.2612
SRY	ChEA Transcription Factor Targets	1.0	null
RPS16	Pathway Commons Protein-Protein Interactions	1.0	null
H3K9me3_U2OS_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
DAN-G	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.855749
PMC3430588-1477-3155-10-16-S1.pdf-5-CREB3_CREB3	Rummagene Transcription Factor Associations 2026	1.0	null
DDX41	Pathway Commons Protein-Protein Interactions	1.0	null
DHX15	Pathway Commons Protein-Protein Interactions	1.0	null
Stat2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	88.3786
GSE146982_7_v_1_gpd1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE160304,GSE163392_0_v_3_zswim8_human	RummaGEO Gene Perturbation Signatures	-1.0	null
lateral septal nucleus, intermedio-ventral part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.08101
H3K4me2_IMR90	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
hsa-miR-146b-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
OCIAML3	DepMap CRISPR Gene Dependency	1.0	2.48928
CAPZB	Pathway Commons Protein-Protein Interactions	1.0	null
PCBP2	Pathway Commons Protein-Protein Interactions	1.0	null
superficial stratum of r11Tr	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.32916
FLOT2	Pathway Commons Protein-Protein Interactions	1.0	null
salivary gland	GTEx Tissue Gene Expression Profiles	1.0	1.19464
SMARCA4	Pathway Commons Protein-Protein Interactions	1.0	null
PMC9512540__F3	PFOCR Pathway Figure Associations 2024	1.0	null
(S)-Zopiclone	DeepCoverMOA Drug Mechanisms of Action	1.0	0.26
PMC10170086-41598_2023_34519_MOESM6_ESM.xlsx-Shee2-The_differentially_expressed_genes_between_the_BARX2_high_and_BARX2_low_group_of_LIHC_patients_BARX2	Rummagene Transcription Factor Associations 2026	1.0	null
MSN	Pathway Commons Protein-Protein Interactions	1.0	null
G3BP1	Pathway Commons Protein-Protein Interactions	1.0	null
central nucleus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.909325
SK-OV-3	Sanger Dependency Map Cancer Cell Line Proteomics	1.0	2.24634
tail of caudate nucleus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.958343
BL3609 (MAZ)	NURSA Protein Complexes	1.0	null
Pax7	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	33.2361
MRPS23	Pathway Commons Protein-Protein Interactions	1.0	null
hsa-miR-4704-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
496100469_TCx_no dementia_TBI_89_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.61552
SCYL2	Pathway Commons Protein-Protein Interactions	1.0	null
actin filament	GO Cellular Component Annotations 2025	1.0	null
DLX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.3374
ventral subnucleus of MG	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.24453
RPLP2	Pathway Commons Protein-Protein Interactions	1.0	null
KRT4	Pathway Commons Protein-Protein Interactions	1.0	null
RBM10	Pathway Commons Protein-Protein Interactions	1.0	null
EPDR1	Pathway Commons Protein-Protein Interactions	1.0	null
GSE146982_7_v_6_gpd1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
YWHAG	Pathway Commons Protein-Protein Interactions	1.0	null
r1 part of dorsal raphe nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.09847
PMC12186250-NIHMS2085662-supplement-3.xlsx-4111_TEAD4_peaks-Gene_Name_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
actin cytoskeleton	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.196999
organic cyclic compound binding	GO Molecular Function Annotations 2015	1.0	null
TGM1	Pathway Commons Protein-Protein Interactions	1.0	null
FOSL1::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.1557
LS1034	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02829
GSE71468,GSE76476_0_v_3_rbfox1_human	RummaGEO Gene Perturbation Signatures	1.0	null
LDHB	Pathway Commons Protein-Protein Interactions	1.0	null
Carcinoma Breast	DisGeNET Gene-Disease Associations	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-HD-7832-01A-11R-2132-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
DKC1	Pathway Commons Protein-Protein Interactions	1.0	null
CSTA	Pathway Commons Protein-Protein Interactions	1.0	null
BL313 (SMC3)	NURSA Protein Complexes	1.0	null
Tazarotene1	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.33
GSE96777,GSE96778_1_v_0_zbtb4_human	RummaGEO Gene Perturbation Signatures	1.0	null
MOLM-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2402
NB6	DepMap CRISPR Gene Dependency	1.0	5.74829
TGM3	Pathway Commons Protein-Protein Interactions	1.0	null
MRPS28	Pathway Commons Protein-Protein Interactions	1.0	null
RERF-LC-KJ	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.45426
GSE129725_4_v_0_bmal1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
neuron spine	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.28846
EZH2	ENCODE Transcription Factor Targets	1.0	null
Leukocyte	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.15
PARK2	Pathway Commons Protein-Protein Interactions	1.0	null
HSPE1	Pathway Commons Protein-Protein Interactions	1.0	null
GSE186440,GSE186443_0_v_5_daxx_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-LP-A4AX-01A-12R-A24H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Sox7	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	21.0547
UMUC6	DepMap CRISPR Gene Dependency	1.0	3.39736
PSMB2	Pathway Commons Protein-Protein Interactions	1.0	null
IGR39	CCLE Cell Line Gene CNV Profiles	1.0	1.62562
HL-60	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.69092
reticular formation of p1Lim	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.07917
TNKS	Pathway Commons Protein-Protein Interactions	1.0	null
Tafamidis	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.22
NAA10	Pathway Commons Protein-Protein Interactions	1.0	null
GSE221327_5_v_2_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
CTPS1	Pathway Commons Protein-Protein Interactions	1.0	null
shell part of the anterobasal nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.78401
DDX27	Pathway Commons Protein-Protein Interactions	1.0	null
superficial stratum of IC	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.7799
TEX10	Pathway Commons Protein-Protein Interactions	1.0	null
Telomerase catalytic core complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.831
TIMM50	Pathway Commons Protein-Protein Interactions	1.0	null
CPSF6	Pathway Commons Protein-Protein Interactions	1.0	null
ILF2	Pathway Commons Protein-Protein Interactions	1.0	null
Primary motor area, Layer 6a	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.02718
WSU-NHL	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Kidney Chromophobe_KICH_TCGA-KN-8424-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GTF2F1_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GSE165548_2_v_13_gemcitabine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
SCH 530348	DeepCoverMOA Drug Mechanisms of Action	1.0	0.53
YWHAQ	Pathway Commons Protein-Protein Interactions	1.0	null
QKI	Pathway Commons Protein-Protein Interactions	1.0	null
Actin family	InterPro Predicted Protein Domain Annotations	1.0	null
IGKV1-5	Pathway Commons Protein-Protein Interactions	1.0	null
periventricular nucleus, preoptic portion	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.947642
hsa-miR-320e	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
LGE-VZ border region	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.66713
POLR1B	Pathway Commons Protein-Protein Interactions	1.0	null
cytoskeleton	LOCATE Predicted Protein Localization Annotations	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-EB-A82B-01A-11R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
outer CP in ventromedial extrastriate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.09022
SW982	Sanger Dependency Map Cancer Cell Line Proteomics	1.0	2.98749
alar part of terminal hypothalamus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.28338
MFE296_ENDOMETRIUM	CCLE Cell Line Proteomics	1.0	2.64078
outer CP in caudal midinferior temporal cortex (area TF)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.903124
BL323 (MSH2)	NURSA Protein Complexes	1.0	null
UBA52	Pathway Commons Protein-Protein Interactions	1.0	null
Orbital area, ventrolateral part, layer 6a	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.42964
DGKG	Pathway Commons Protein-Protein Interactions	1.0	null
intermediate stratum of TSPaA	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.09911
ITGB1	Pathway Commons Protein-Protein Interactions	1.0	null
RARG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.329
SETDB1	ENCODE Transcription Factor Targets	1.0	null
GSE173873_5_v_13_stra8_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Pancreatic adenocarcinoma_PAAD_TCGA-IB-AAUO-01A-12R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE230744,GSE237803_5_v_2_hira_human	RummaGEO Gene Perturbation Signatures	1.0	null
H2AFZ_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Ischemic Stroke	DisGeNET Gene-Disease Associations	1.0	null
RF-48	Sanger Dependency Map Cancer Cell Line Proteomics	1.0	1.95842
GSE166767_1_v_2_ctcfl_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE138863_2_v_1_disulfiram_human	RummaGEO Drug Perturbation Signatures	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-63-A5MN-01A-22R-A27Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Darifenacin	DeepCoverMOA Drug Mechanisms of Action	1.0	0.45
Head and Neck squamous cell carcinoma_HNSC_TCGA-BB-7872-01A-11R-2232-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
intercalated nucleus of medulla	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.835214
GW 3965	DeepCoverMOA Drug Mechanisms of Action	1.0	0.23
PMC11696420-41467_2024_55617_MOESM3_ESM.xlsx-Sheet1-Supplementary_Data_1_The_2495_differentially_expressed_genes_between_the_L3MBTL3_knockout_L3-KO4_or_L3-KO5_and_control_C_groups_of_SUM159PT_cells_L3MBTL3	Rummagene Transcription Factor Associations 2026	1.0	null
Systemic Scleroderma	DisGeNET Gene-Disease Associations	1.0	null
GSE238018_1_v_4_mxra8_human	RummaGEO Gene Perturbation Signatures	1.0	null
CEBPB_A549_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PPP1R12A	Pathway Commons Protein-Protein Interactions	1.0	null
BACH2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	67.2574
Hs-445	Sanger Dependency Map Cancer Cell Line Proteomics	1.0	2.3592
Childhood Glioblastoma	DisGeNET Gene-Disease Associations	1.0	null
Longissimus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.889
CTNND1	Pathway Commons Protein-Protein Interactions	1.0	null
CHAGO-K-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.83769
SERPINB2	Pathway Commons Protein-Protein Interactions	1.0	null
SK-UT-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
KYSE-450	COSMIC Cell Line Gene Mutation Profiles	1.0	null
PIP	Pathway Commons Protein-Protein Interactions	1.0	null
GSE210101,GSE210114_5_v_3_urod_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE236502_2_v_3_paclitaxel_human	RummaGEO Drug Perturbation Signatures	1.0	null
ventromedial nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.04925
adenyl ribonucleotide binding	GO Molecular Function Annotations 2015	1.0	null
membrane-bounded vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
RPL22	Pathway Commons Protein-Protein Interactions	1.0	null
GSE205729,GSE205731_2_v_3_tazemetostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
M059K	CCLE Cell Line Gene CNV Profiles	1.0	1.46598
NB6	Sanger Dependency Map Cancer Cell Line Proteomics	-1.0	-2.39543
Aplasia Cutis Congenita	DisGeNET Gene-Disease Associations	1.0	null
STBD1	Pathway Commons Protein-Protein Interactions	1.0	null
PMC7611259-EMS114661-supplement-Supplementary_Tables.xlsx-ST18-Unnamed_9_ST18	Rummagene Transcription Factor Associations 2026	1.0	null
H3K4me3_G1E-ER4_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
Visual areas	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.05536
extracellular vesicular exosome	GO Cellular Component Annotations 2015	1.0	null
PMC11131031-pwad060_suppl_supplementary_tables_s3.xlsx-FOXO1-knockout_bulk_RNA-seq-Differentially_expressed_genes_identified_in_bulk_RNA-seq_of_FOXO1-_-_vs_FOXO1_hMSCs_FOXO1	Rummagene Transcription Factor Associations 2026	1.0	null
GSE218819_3_v_4_kdm5b_human	RummaGEO Gene Perturbation Signatures	1.0	null
outer SZ in medial temporal-occipital cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.55544
BARX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.6711
Primary somatosensory area, barrel field	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.05317
GSTK1	Pathway Commons Protein-Protein Interactions	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-S9-A6WI-01A-21R-A33Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BL1657 (SMG1)	NURSA Protein Complexes	1.0	null
DYX1C1	Pathway Commons Protein-Protein Interactions	1.0	null
ML349	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.78
VMRCRCZ	CCLE Cell Line Gene CNV Profiles	-1.0	-1.38165
AGO3	Pathway Commons Protein-Protein Interactions	1.0	null
Interposed nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.18976
macromolecular complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.040702
GSE182921_0_v_1_slit2_human	RummaGEO Gene Perturbation Signatures	1.0	null
H3K36me3_cardiac mesoderm_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
endocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052479
HOXB2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.4013
POF1B	Pathway Commons Protein-Protein Interactions	1.0	null
ANXA2	Pathway Commons Protein-Protein Interactions	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-ZG-A8QZ-01A-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE125862_2_v_1_dexamethasone_human	RummaGEO Drug Perturbation Signatures	-1.0	null
SK-MEL cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.96
intracellular part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.040915
NEDD8	Pathway Commons Protein-Protein Interactions	1.0	null
PDCD6IP	Pathway Commons Protein-Protein Interactions	1.0	null
KRT27	Pathway Commons Protein-Protein Interactions	1.0	null
HOP62	CCLE Cell Line Gene CNV Profiles	-1.0	-1.90043
LRRC47	Pathway Commons Protein-Protein Interactions	1.0	null
STMN1	Pathway Commons Protein-Protein Interactions	1.0	null
BATF::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.6581
PPIA	Pathway Commons Protein-Protein Interactions	1.0	null
PON2	Pathway Commons Protein-Protein Interactions	1.0	null
MAPK1	Pathway Commons Protein-Protein Interactions	1.0	null
MAX_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
WAY 316606	DeepCoverMOA Drug Mechanisms of Action	1.0	0.46
temporal pole, right, superior aspect	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.26429
AGO1	Pathway Commons Protein-Protein Interactions	1.0	null
NDUFS1	Pathway Commons Protein-Protein Interactions	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-33-4566-01A-01R-1443-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
DAB2	Pathway Commons Protein-Protein Interactions	1.0	null
GSE73628_1_v_2_igf1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Fibrinogen complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.008
HONE-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.594
MYO1B	Pathway Commons Protein-Protein Interactions	1.0	null
VPS28	Pathway Commons Protein-Protein Interactions	1.0	null
I3C	DeepCoverMOA Drug Mechanisms of Action	1.0	0.35
MAP4	Pathway Commons Protein-Protein Interactions	1.0	null
KRT78	Pathway Commons Protein-Protein Interactions	1.0	null
RPLP0P6	Pathway Commons Protein-Protein Interactions	1.0	null
WDR48	Pathway Commons Protein-Protein Interactions	1.0	null
KIF2C	Pathway Commons Protein-Protein Interactions	1.0	null
PMC9160255-41467_2022_30710_MOESM4_ESM.xlsx-AR_specific_regulated_genes-SYMBOL_AR	Rummagene Transcription Factor Associations 2026	1.0	null
22RV1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Multiple Chronic Conditions	DisGeNET Gene-Disease Associations	1.0	null
GSE151090_5_v_1_verteporfin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
NKX6-2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.4595
RPL24	Pathway Commons Protein-Protein Interactions	1.0	null
NKX2-8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.3427
CHEMBL2431803	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.3
KG1C	CCLE Cell Line Gene CNV Profiles	1.0	1.5687
DDX5	Pathway Commons Protein-Protein Interactions	1.0	null
XRCC6	Pathway Commons Protein-Protein Interactions	1.0	null
GTPBP4	Pathway Commons Protein-Protein Interactions	1.0	null
Reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.05
purine nucleoside binding	GO Molecular Function Annotations 2015	1.0	null
LOU-NH91	Sanger Dependency Map Cancer Cell Line Proteomics	1.0	2.45843
PELP1	Pathway Commons Protein-Protein Interactions	1.0	null
PF-382	COSMIC Cell Line Gene Mutation Profiles	1.0	null
cytoskeleton	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.071827
CTCF_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GCIY	CCLE Cell Line Gene CNV Profiles	-1.0	-2.37015
Lobule II, granular layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.07153
TT	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Colorectal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.138
Cilengitide	DeepCoverMOA Drug Mechanisms of Action	-1.0	-1.96
Perturb_7188_OE_TMEM119_SRP279053	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	12.5316
U2 snRNP	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.7
cellular_component	LOCATE Predicted Protein Localization Annotations	1.0	null
cingulate gyrus, retrosplenial part, left, superior bank of gyrus	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.998186
HSP90AB1	Pathway Commons Protein-Protein Interactions	1.0	null
GW9508	DeepCoverMOA Drug Mechanisms of Action	1.0	0.61
PMC12069319-Table1.xlsx-OCAB_WT_BirA-Gene_Symbol_POU2AF1	Rummagene Transcription Factor Associations 2026	1.0	null
CLIC5	Pathway Commons Protein-Protein Interactions	1.0	null
UBR5	Pathway Commons Protein-Protein Interactions	1.0	null
GSE195713_0_v_1_lapatinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
BL5990 (ZNF592)	NURSA Protein Complexes	1.0	null
BL1578 (MCM8)	NURSA Protein Complexes	1.0	null
EPS15	Pathway Commons Protein-Protein Interactions	1.0	null
Nifedipine	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.34
NCI-H1869	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.38595
GSE192362_1_v_0_erastin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
YAP1-20516196-MESC-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
OVCA420	DepMap CRISPR Gene Dependency	1.0	8.27091
RARB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.8771
r7 part of the vestibular column	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.06634
CB 13	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.4
KIF3A	Pathway Commons Protein-Protein Interactions	1.0	null
Acute Myeloid Leukemia_LAML_TCGA-AB-2887-03A-01T-0735-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
G111	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01177
NCI-H292	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Mutation Profiles	1.0	null
NR3C1	ENCODE Transcription Factor Targets	1.0	null
LN-405	Sanger Dependency Map Cancer Cell Line Proteomics	1.0	2.86268
GSE138938_1_v_2_foxp2_human	RummaGEO Gene Perturbation Signatures	1.0	null
hsa-miR-3160-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
PMC8143797-elife-62857-fig4-data2.xlsx-TAZ-CAMTA1_ChIP_RNAseq_merged-ENSEMBL_CAMTA1	Rummagene Transcription Factor Associations 2026	1.0	null
CDC5L	Pathway Commons Protein-Protein Interactions	1.0	null
BL3057 (TIPRL)	NURSA Protein Complexes	1.0	null
HOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.0256
EW-24	COSMIC Cell Line Gene Mutation Profiles	1.0	null
CP 94253	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.37
VCaP	Sanger Dependency Map Cancer Cell Line Proteomics	-1.0	-2.88125
C1QBP	Pathway Commons Protein-Protein Interactions	1.0	null
hsa-miR-10b	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
H3K4me1_CH12.LX_mm9_4	ENCODE Histone Modification Site Profiles	1.0	null
PA2G4	Pathway Commons Protein-Protein Interactions	1.0	null
deep gray layer of SC	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.78103
MITF-21258399-MELANOMA-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
BL2505 (PITX1)	NURSA Protein Complexes	1.0	null
YWHAH	Pathway Commons Protein-Protein Interactions	1.0	null
ERBB3	Pathway Commons Protein-Protein Interactions	1.0	null
superficial stratum of PPaA	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.37222
Prostate adenocarcinoma_PRAD_TCGA-XJ-A9DI-01A-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
deoxynivalenol	CTD Gene-Chemical Interactions	1.0	null
hsa-miR-892a	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
ETV2::HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.7834
PHF8 (PHF8)	NURSA Protein Complexes	1.0	null
SRSF5	Pathway Commons Protein-Protein Interactions	1.0	null
S100A9	Pathway Commons Protein-Protein Interactions	1.0	null
PABPN1	Pathway Commons Protein-Protein Interactions	1.0	null
D-392MG	Sanger Dependency Map Cancer Cell Line Proteomics	1.0	3.24585
RAB33B	Pathway Commons Protein-Protein Interactions	1.0	null
intracellular part	LOCATE Predicted Protein Localization Annotations	1.0	null
Purvalanol	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.45
Liver cancer cell	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
HIST1H4F	Pathway Commons Protein-Protein Interactions	1.0	null
Sacrospinalis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.852
HMGA1	Pathway Commons Protein-Protein Interactions	1.0	null
NAMALWA	CCLE Cell Line Gene CNV Profiles	-1.0	-1.58622
HPRT1	Pathway Commons Protein-Protein Interactions	1.0	null
JUN_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
r10 part of basolateral reticular formation	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.13522
FTSJ3	Pathway Commons Protein-Protein Interactions	1.0	null
GPI	Pathway Commons Protein-Protein Interactions	1.0	null
dorsolateral part of m1A	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.70213
MYC_MCF-7_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Tolimidone	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.4
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-7097-11A-01R-2016-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-NC-A5HK-01A-11R-A26W-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CAT	Pathway Commons Protein-Protein Interactions	1.0	null
hsa-miR-578	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
SEC23B	Pathway Commons Protein-Protein Interactions	1.0	null
CTBP2-25329375-LNCAP-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
superficial stratum of JcPL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.06303
KANK2	Pathway Commons Protein-Protein Interactions	1.0	null
THRB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	59.2502
Brain Lower Grade Glioma_LGG_TCGA-HT-7476-01A-11R-2027-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RPS19	Pathway Commons Protein-Protein Interactions	1.0	null
HSPA4L	Pathway Commons Protein-Protein Interactions	1.0	null
PRKDC	Pathway Commons Protein-Protein Interactions	1.0	null
Avosentan	DeepCoverMOA Drug Mechanisms of Action	1.0	0.41
JUND_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RXRG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	62.2975
GSE148010,GSE148120_3_v_2_tet2_human	RummaGEO Gene Perturbation Signatures	1.0	null
PKNOX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.6839
PMC8202205-NIHMS1706275-supplement-Table_S1.xlsx-Mesend_D2_GATA6-dependent-SYMBOL_GATA6	Rummagene Transcription Factor Associations 2026	1.0	null
Impaired Cognition	DisGeNET Gene-Disease Associations	1.0	null
RPS9	Pathway Commons Protein-Protein Interactions	1.0	null
PMC8143797-elife-62857-fig3-data2.xlsx-DEgenes_SW872_TAZ-CAMTA1_vs_EV-Gene_CAMTA1	Rummagene Transcription Factor Associations 2026	1.0	null
EXOSC10	Pathway Commons Protein-Protein Interactions	1.0	null
FOXD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.8
SG in primary somatosensory cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.10933
RB1_KD_GSE50532_624_human_OSTEOBLASTS	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
GSE226770_1_v_0_atrx_human	RummaGEO Gene Perturbation Signatures	1.0	null
whole body	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
KRT13	Pathway Commons Protein-Protein Interactions	1.0	null
KRT9	Pathway Commons Protein-Protein Interactions	1.0	null
MAP1LC3A	Hub Proteins Protein-Protein Interactions	1.0	null
Lung adenocarcinoma_LUAD_TCGA-55-6984-01A-11R-1949-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC5444746-oncotarget-08-30328-s002.xlsx-SI02_Gene_symbols-1912_ChIP-Seq_H3K9me1_2_demethylation_and_ChIP-Seq_AR_AR	Rummagene Transcription Factor Associations 2026	1.0	null
PDXK	Pathway Commons Protein-Protein Interactions	1.0	null
Hematopoietic cell	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.15
Enzalutamide	DeepCoverMOA Drug Mechanisms of Action	1.0	0.25
Disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.58
Quizartinib	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.5
Torcetrapib	DeepCoverMOA Drug Mechanisms of Action	1.0	0.79
SKIV2L2	Pathway Commons Protein-Protein Interactions	1.0	null
RBM28	Pathway Commons Protein-Protein Interactions	1.0	null
CKB	Pathway Commons Protein-Protein Interactions	1.0	null
SLC25A13	Pathway Commons Protein-Protein Interactions	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-HT-A5R5-01A-11R-A28M-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Blood platelet	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.167
outer CP in dorsomedial parietal cortex (area 7m)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.42493
hsa-miR-520d-5p	TargetScan Predicted Conserved microRNA Targets	1.0	0.517189
BL3238 (DDX28)	NURSA Protein Complexes	1.0	null
paracentral lobule, posterior part, left, bank of cingulate sulcus	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.13119
H3K4me2_astrocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me3_G1E-ER4_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
PBX3_SK-N-SH_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
molecular_function	GO Molecular Function Annotations 2015	1.0	null
subcuneiform nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.17768
NAPA	Pathway Commons Protein-Protein Interactions	1.0	null
WDR5	Pathway Commons Protein-Protein Interactions	1.0	null
PMC10123531-NIHMS1874945-supplement-Table_S6.xlsx-SOX2_BCAT_cobound_peaks-Gene_Name_SOX2	Rummagene Transcription Factor Associations 2026	1.0	null
Epithelial ovarian cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.886
OVCAR-3 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.829
NACA	Pathway Commons Protein-Protein Interactions	1.0	null
root cap	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.66657
LXF-289	Sanger Dependency Map Cancer Cell Line Proteomics	1.0	1.54765
DIAPH1	NURSA Protein-Protein Interactions	1.0	0.152958
TT2609-C02	COSMIC Cell Line Gene Mutation Profiles	1.0	null
JHH-5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.18138
BL6476 (EEF2K)	NURSA Protein Complexes	1.0	null
SRSF1	Pathway Commons Protein-Protein Interactions	1.0	null
Kidney renal papillary cell carcinoma_KIRP_TCGA-BQ-5879-01A-11R-1592-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
TENM3	Pathway Commons Protein-Protein Interactions	1.0	null
JUND_HepG2_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-D3-A3MO-06A-11R-A21D-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
liver	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.067805
Deep Vein Thrombosis	DisGeNET Gene-Disease Associations	1.0	null
cytoskeleton	GO Cellular Component Annotations 2015	1.0	null
BL8149 (SIPA1)	NURSA Protein Complexes	1.0	null
FN1	Pathway Commons Protein-Protein Interactions	1.0	null
HSPA8	Pathway Commons Protein-Protein Interactions	1.0	null
E2F7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.2806
GABARAPL2	Hub Proteins Protein-Protein Interactions	1.0	null
Ovarian Neoplasm	DisGeNET Gene-Disease Associations	1.0	null
RPS15	Pathway Commons Protein-Protein Interactions	1.0	null
SSB	Pathway Commons Protein-Protein Interactions	1.0	null
A4 noradrenergic cell group	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.29248
GSE216540_0_v_6_fulvestrant_human	RummaGEO Drug Perturbation Signatures	1.0	null
NCIH650	DepMap CRISPR Gene Dependency	1.0	2.16568
VASP	Pathway Commons Protein-Protein Interactions	1.0	null
ventral tegmental area	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.870196
Posterior parietal association areas, layer 6b	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.38987
CBC611 (RNF20)	NURSA Protein Complexes	1.0	null
PSMB5	Pathway Commons Protein-Protein Interactions	1.0	null
PMC8040704-jcav12p2673s2.xlsx-Up-regulated_genes_in_EBF1-Unnamed_5_EBF1	Rummagene Transcription Factor Associations 2026	1.0	null
GSE221327_4_v_0_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
TUBA8	Pathway Commons Protein-Protein Interactions	1.0	null
CALR	Pathway Commons Protein-Protein Interactions	1.0	null
AKR1C3-IN-1	DeepCoverMOA Drug Mechanisms of Action	1.0	0.37
GSE142210_2_v_1_panobinostat_human	RummaGEO Drug Perturbation Signatures	-1.0	null
glutamatergic synapse	GO Cellular Component Annotations 2023	1.0	null
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
Acute Myeloid Leukemia_LAML_TCGA-AB-2899-03A-01T-0736-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cellular_component	GO Cellular Component Annotations 2015	1.0	null
nucleotide binding	GO Molecular Function Annotations 2015	1.0	null
PMC11131031-pwad060_suppl_supplementary_tables_s3.xlsx-FOXO1-knockout_bulk_RNA-seq-Unnamed_1_FOXO1	Rummagene Transcription Factor Associations 2026	1.0	null
FAM91A1	Pathway Commons Protein-Protein Interactions	1.0	null
POU4F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.0917
CTCF_GM12874_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KDM3B	NURSA Protein-Protein Interactions	1.0	1.06443
PDIA6	Pathway Commons Protein-Protein Interactions	1.0	null
plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.280012
GSE162892_4_v_5_isox_human	RummaGEO Drug Perturbation Signatures	1.0	null
dorsal subnucleus of MG	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.26011
FTO	Pathway Commons Protein-Protein Interactions	1.0	null
Mitochondrial fatty acid beta-oxidation multienzyme complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.032
RB1_KD_GSE50532_656_human_OSTEOBLASTS	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
GABARAP	Pathway Commons Protein-Protein Interactions	1.0	null
HTR1B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.68669
GABARAPL2	Pathway Commons Protein-Protein Interactions	1.0	null
Icatibant	DeepCoverMOA Drug Mechanisms of Action	1.0	1.17
respiratory chain	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.291047
GSE184892_7_v_2_trehalose_human	RummaGEO Drug Perturbation Signatures	1.0	null
LN-405	COSMIC Cell Line Gene Mutation Profiles	1.0	null
KLHL12	Pathway Commons Protein-Protein Interactions	1.0	null
Primary somatosensory area, lower limb, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.29513
Huntington disease	PANTHER Pathways	1.0	null
CLTB	Pathway Commons Protein-Protein Interactions	1.0	null
suboptic nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.47535
Perturb_7450_KD_PUM1/PUM2_SRP100771	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.17417
BL4031 (BCAS2)	NURSA Protein Complexes	1.0	null
GTL-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.944872
dendritic spine	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.301797
occipital pole, left, inferior aspect	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.10496
CTTN	Pathway Commons Protein-Protein Interactions	1.0	null
ARRB2	Pathway Commons Protein-Protein Interactions	1.0	null
Cadherin signaling pathway	PANTHER Pathways	1.0	null
Cortical amygdalar area, anterior part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.65719
TIF2 (NCOA2)	NURSA Protein Complexes	1.0	null
GSE85565_1_v_0_tcf21_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Blood plasma	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.167
BL409 (UPF1)	NURSA Protein Complexes	1.0	null
BL1820 (IRF3)	NURSA Protein Complexes	1.0	null
ribonucleoside binding	GO Molecular Function Annotations 2015	1.0	null
KRT24	Pathway Commons Protein-Protein Interactions	1.0	null
GSE86021_0_v_1_crenolanib_human	RummaGEO Drug Perturbation Signatures	1.0	null
PMC10170086-41598_2023_34519_MOESM6_ESM.xlsx-Sheet3-The_overlapping_genes_between_significantly_co-expressed_genes_and_significantly_differentially_expressed_genes_of_BARX2_in_LIHC_BARX2	Rummagene Transcription Factor Associations 2026	1.0	null
Immunodeficiency 73a with defective neutrophil chemotaxis and leukocytosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.048
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-6938-11A-01R-1915-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Pancreatic adenocarcinoma_PAAD_TCGA-IB-7885-01A-11R-2156-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Glaucoma	DisGeNET Gene-Disease Associations	1.0	null
CEBPD	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.2066
small intestine	HPA Tissue Protein Expression Profiles	1.0	0.905838
EPI-2064-1 (ERBB2)	NURSA Protein Complexes	1.0	null
Plant primordium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.739
Urethral Intrinsic Sphincter Deficiency	DisGeNET Gene-Disease Associations	1.0	null
ovary	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-0.930124
Amsacrine	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.64
hsa-miR-4306	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
Congenital Contractural Arachnodactyly	DisGeNET Gene-Disease Associations	1.0	null
IKZF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.842
HSD17B10	Pathway Commons Protein-Protein Interactions	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-HC-7210-01A-11R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
WDR62	Pathway Commons Protein-Protein Interactions	1.0	null
PMC12268429-ao5c02585_si_001.pdf-9-ATF2_ATF2	Rummagene Transcription Factor Associations 2026	1.0	null
hsa-miR-215	TargetScan Predicted Conserved microRNA Targets	1.0	0.361556
Organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.53
SRP14	Pathway Commons Protein-Protein Interactions	1.0	null
SPTBN1	Pathway Commons Protein-Protein Interactions	1.0	null
Primary somatosensory area, lower limb, layer 6b	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.10034
pancreas	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	0.843025
LCL161	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.37
NCI-H64	COSMIC Cell Line Gene Mutation Profiles	1.0	null
ACTC1	Pathway Commons Protein-Protein Interactions	1.0	null
Gastrointestinal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.422
NR3C1-23031785-PC12-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
arcuate nucleus of hypothalamus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.19923
Medial geniculate complex	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.21423
Dementia	DisGeNET Gene-Disease Associations	1.0	null
PMC8202205-NIHMS1706275-supplement-Table_S1.xlsx-Mesend_D2_GATA6-dependent-ENSEMBL_GATA6	Rummagene Transcription Factor Associations 2026	1.0	null
ACTG2	Pathway Commons Protein-Protein Interactions	1.0	null
OVK-18	Sanger Dependency Map Cancer Cell Line Proteomics	-1.0	-1.8325
EIF3K	Pathway Commons Protein-Protein Interactions	1.0	null
LEO1	Pathway Commons Protein-Protein Interactions	1.0	null
BL2221 (COL4A3BP)	NURSA Protein Complexes	1.0	null
WRNIP1_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PMC12069319-Table1.xlsx-OCAB_p35_BirA-Gene_Symbol_POU2AF1	Rummagene Transcription Factor Associations 2026	1.0	null
MAX	ENCODE Transcription Factor Targets	1.0	null
WRNIP1	ENCODE Transcription Factor Targets	1.0	null
496100529_HIP_no dementia_no TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.55
SNRNP200	Pathway Commons Protein-Protein Interactions	1.0	null
TPM4	Pathway Commons Protein-Protein Interactions	1.0	null
SK-BR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.861108
PLC/PRF/5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.990608
Head and Neck squamous cell carcinoma_HNSC_TCGA-P3-A5QA-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SRSF10	Pathway Commons Protein-Protein Interactions	1.0	null
HSP90AB2P	Pathway Commons Protein-Protein Interactions	1.0	null
HCC1011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10685
NIPSNAP1	Pathway Commons Protein-Protein Interactions	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-HT-7882-01A-11R-2403-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hsa-miR-300	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
Pou5f1::Sox2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	26.2887
RANBP6	Pathway Commons Protein-Protein Interactions	1.0	null
PSMD11	Pathway Commons Protein-Protein Interactions	1.0	null
integument	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05066
SETDB1_U2OS_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GSE121824,GSE121826_0_v_6_scaf8_human	RummaGEO Gene Perturbation Signatures	1.0	null
NUP205	Pathway Commons Protein-Protein Interactions	1.0	null
ESR1-22446102-UTERI-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
RPS14	Pathway Commons Protein-Protein Interactions	1.0	null
IZ in midlateral extrastriate cortex (area 19)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.852388
SW13	Sanger Dependency Map Cancer Cell Line Proteomics	-1.0	-3.85792
GTF2B	Pathway Commons Protein-Protein Interactions	1.0	null
intermediate stratum of SePal	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.00537
RNA nuclear export complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.675
ventral reuniens nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.04459
Repaglinide	DeepCoverMOA Drug Mechanisms of Action	1.0	0.25
NUDT16L1	Pathway Commons Protein-Protein Interactions	1.0	null
LMO2-26923725-CHIP-SEQ-HEMOGENIC-ENDOTHELIUM-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
H3K4me3_testis_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
BL1576 (ESCO1)	NURSA Protein Complexes	1.0	null
DHX57	Pathway Commons Protein-Protein Interactions	1.0	null
ATP1A2	Pathway Commons Protein-Protein Interactions	1.0	null
GSE214212_2_v_1_chd6_human	RummaGEO Gene Perturbation Signatures	1.0	null
SR-786	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19522
MYL12B	Pathway Commons Protein-Protein Interactions	1.0	null
GSE183101_0_v_1_hvcn1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.041814
BAG4	Pathway Commons Protein-Protein Interactions	1.0	null
GSE97352_3_v_2_dasatinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
YAP1-20516196-MESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
PMC8283158-mmc2.xlsx-TCF4_ChIP-symbol_TCF4	Rummagene Transcription Factor Associations 2026	1.0	null
UBC	Pathway Commons Protein-Protein Interactions	1.0	null
HSPG2	Pathway Commons Protein-Protein Interactions	1.0	null
NCI-H650	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.928776
PIK3CB	Pathway Commons Protein-Protein Interactions	1.0	null
PDCD6	Pathway Commons Protein-Protein Interactions	1.0	null
496100281_HIP_probable Alzheimer's disease_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.52088
ATP5C1	Pathway Commons Protein-Protein Interactions	1.0	null
YY1	JASPAR Predicted Transcription Factor Targets	1.0	null
NCI-H522	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00073
U2AF2	Pathway Commons Protein-Protein Interactions	1.0	null
vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
GSE70935_1_v_0_cyfip1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
PRDX4	Pathway Commons Protein-Protein Interactions	1.0	null
CEBPB_HepG2_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PMC9124206-41419_2022_4940_MOESM8_ESM.xlsx-DEG_PACA-US-ID_PTF1A	Rummagene Transcription Factor Associations 2026	1.0	null
SUB1	Pathway Commons Protein-Protein Interactions	1.0	null
VSIG8	Pathway Commons Protein-Protein Interactions	1.0	null
ACTN1	Pathway Commons Protein-Protein Interactions	1.0	null
ETV5::DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.2235
NOP2	Pathway Commons Protein-Protein Interactions	1.0	null
H3K4me2_HeLa-S3_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
PMC6533336-41467_2019_9972_MOESM4_ESM.xlsx-Supplementary_Data_1-Supplementary_Data_1_PLZF_IP_-_Mass_Spectrometry_Identified_Proteins_ZBTB16	Rummagene Transcription Factor Associations 2026	1.0	null
RAC1	Pathway Commons Protein-Protein Interactions	1.0	null
layer III of rostral entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.00862
inner portion of lateral ganglionic eminence	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.843574
Alzheimer disease-presenilin pathway	PANTHER Pathways	1.0	null
TEFM	Pathway Commons Protein-Protein Interactions	1.0	null
YES1	Pathway Commons Protein-Protein Interactions	1.0	null
ACOX1	Pathway Commons Protein-Protein Interactions	1.0	null
MAFF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.8302
FOS::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	68.2211
SRY-25088423-EMBRYONIC-GONADS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
glutamatergic synapse	GO Cellular Component Annotations 2025	1.0	null
ITGAV	Pathway Commons Protein-Protein Interactions	1.0	null
EZH2_endothelial cell of umbilical vein_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HOXB3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.849
GSE76425_0_v_5_lenalidomide_human	RummaGEO Drug Perturbation Signatures	1.0	null
ARPC5	Pathway Commons Protein-Protein Interactions	1.0	null
Midbrain, sensory related	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.55817
KRT5	Pathway Commons Protein-Protein Interactions	1.0	null
PLP2	Pathway Commons Protein-Protein Interactions	1.0	null
CDK7	Pathway Commons Protein-Protein Interactions	1.0	null
RPL7	Pathway Commons Protein-Protein Interactions	1.0	null
UBASH3B	Pathway Commons Protein-Protein Interactions	1.0	null
membrane-bounded vesicle	GO Cellular Component Annotations 2015	1.0	null
SPG7	Pathway Commons Protein-Protein Interactions	1.0	null
EIF5A	Pathway Commons Protein-Protein Interactions	1.0	null
RPL28	Pathway Commons Protein-Protein Interactions	1.0	null
HIST1H1T	Pathway Commons Protein-Protein Interactions	1.0	null
Breast Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
OVCAR433	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19097
GSE142210_2_v_8_panobinostat_human	RummaGEO Drug Perturbation Signatures	-1.0	null
IGF2R	Pathway Commons Protein-Protein Interactions	1.0	null
HIST2H2BE	Pathway Commons Protein-Protein Interactions	1.0	null
RPS24	Pathway Commons Protein-Protein Interactions	1.0	null
BOLA2	Pathway Commons Protein-Protein Interactions	1.0	null
paracentral lobule, posterior part, right, bank of cingulate sulcus	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.900619
ELAVL1	Pathway Commons Protein-Protein Interactions	1.0	null
PMC9160255-41467_2022_30710_MOESM6_ESM.xlsx-DHT_AR_ASO_super_enhancers-ENSEMBL_AR	Rummagene Transcription Factor Associations 2026	1.0	null
CFL1	Pathway Commons Protein-Protein Interactions	1.0	null
GAR1	Pathway Commons Protein-Protein Interactions	1.0	null
M-1	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-1.62548
POTEKP	Pathway Commons Protein-Protein Interactions	1.0	null
MEIS1-26923725-CHIP-SEQ-HEMOGENIC-ENDOTHELIUM-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
H 89	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.65
NEK1	Pathway Commons Protein-Protein Interactions	1.0	null
POLR2A_A549_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RRD-251	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.32
gh1	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.74
internal cortical nucleus of inferior colliculus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.81185
GSE210101,GSE210114_2_v_3_urod_human	RummaGEO Gene Perturbation Signatures	1.0	null
VPS26A	Pathway Commons Protein-Protein Interactions	1.0	null
BL3172 (MAVS)	NURSA Protein Complexes	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-S9-A7IS-01A-11R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE219274,GSE219276_2_v_1_doxorubicin_human	RummaGEO Drug Perturbation Signatures	1.0	null
MYH7B	Pathway Commons Protein-Protein Interactions	1.0	null
GSE146612_2_v_0_amiodarone_human	RummaGEO Drug Perturbation Signatures	1.0	null
SMC1A	Pathway Commons Protein-Protein Interactions	1.0	null
NISCH	Pathway Commons Protein-Protein Interactions	1.0	null
WDR6	Pathway Commons Protein-Protein Interactions	1.0	null
SUPT16H	Pathway Commons Protein-Protein Interactions	1.0	null
Serous cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.871
CHD1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MYO3B	Pathway Commons Protein-Protein Interactions	1.0	null
AGL	Pathway Commons Protein-Protein Interactions	1.0	null
HEY	DepMap CRISPR Gene Dependency	1.0	3.61907
MDAMB415	CCLE Cell Line Gene CNV Profiles	1.0	1.59722
BL5039 (CHD9)	NURSA Protein Complexes	1.0	null
EPI-1614-1 (HDAC4)	NURSA Protein Complexes	1.0	null
NCOA5	Pathway Commons Protein-Protein Interactions	1.0	null
P53-22127205-FIBROBLAST-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
GSE71468,GSE76476_2_v_1_rbfox1_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE230744,GSE237803_0_v_3_hira_human	RummaGEO Gene Perturbation Signatures	1.0	null
CHD1	ENCODE Transcription Factor Targets	1.0	null
PRKCI	Pathway Commons Protein-Protein Interactions	1.0	null
LN-229	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09243
FOS_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MY-M12	Sanger Dependency Map Cancer Cell Line Proteomics	1.0	1.96372
adenyl nucleotide binding	GO Molecular Function Annotations 2015	1.0	null
Liver carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.438
496100664_HIP_probable Alzheimer's disease_no TBI_82_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.81346
MMP2	Pathway Commons Protein-Protein Interactions	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CR-7379-01A-11R-2016-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
2,2'-Biquinoline	DeepCoverMOA Drug Mechanisms of Action	1.0	0.52
RPA1	Pathway Commons Protein-Protein Interactions	1.0	null
PMC5414054-ncomms15013-s11.xlsx-SupplementaryData10-Supplementary_Data_10_Genes_differentially_expressed_due_to_infection_in_IRF5-_-_compared_to_parent_KOLF2_cells_IRF5	Rummagene Transcription Factor Associations 2026	1.0	null
carbohydrate derivative binding	GO Molecular Function Annotations 2015	1.0	null
Atrial Fibrillation	DisGeNET Gene-Disease Associations	1.0	null
SNRPC	Pathway Commons Protein-Protein Interactions	1.0	null
YBX3	Pathway Commons Protein-Protein Interactions	1.0	null
Nr2e1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.9163
GATA1-19941826-K562-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
SATB1 mouse (SATB1)	NURSA Protein Complexes	1.0	null
GSE110268_1_v_3_foxd1_human	RummaGEO Gene Perturbation Signatures	1.0	null
SPTAN1	Pathway Commons Protein-Protein Interactions	1.0	null
NDUFA2	Pathway Commons Protein-Protein Interactions	1.0	null
SP600125	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.49
Hepatobiliary system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.434
GSE121824,GSE121826_0_v_7_scaf8_human	RummaGEO Gene Perturbation Signatures	1.0	null
COLO-684	Sanger Dependency Map Cancer Cell Line Proteomics	-1.0	-3.08768
H3K4me3_HEK293_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
PMC9160255-41467_2022_30710_MOESM6_ESM.xlsx-DHT_AR_ASO_super_enhancers-SYMBOL_AR	Rummagene Transcription Factor Associations 2026	1.0	null
BL1860 (TRIP6)	NURSA Protein Complexes	1.0	null
LDHA	Pathway Commons Protein-Protein Interactions	1.0	null
lateral parabrachial nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.22224
LARP1	Pathway Commons Protein-Protein Interactions	1.0	null
H-1152	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.33
mantle zone of r11Tr	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.32916
GYS1	Pathway Commons Protein-Protein Interactions	1.0	null
PMC6097700-pgen.1007515.s008.xlsx-S2_Table-S2_Table_SATB2_Cort_gene-set_list_SATB2	Rummagene Transcription Factor Associations 2026	1.0	null
Lymphoid cell	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.15
Bosentan	DeepCoverMOA Drug Mechanisms of Action	1.0	0.69
Postsynaptic actin cytoskeleton	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.775
Ibrutinib2	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.67
Acute Myeloid Leukemia_LAML_TCGA-AB-2963-03A-01T-0734-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE218060_7_v_3_decitabine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE172490_5_v_3_junb_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PTBP1	Pathway Commons Protein-Protein Interactions	1.0	null
r1 part of vestibulocerebellar nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.28968
H3K36me3_kidney epithelial cell_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RASSF1	Pathway Commons Protein-Protein Interactions	1.0	null
BL9241 (GREB1)	NURSA Protein Complexes	1.0	null
LANCL1	Pathway Commons Protein-Protein Interactions	1.0	null
KU1919_URINARY_TRACT	CCLE Cell Line Proteomics	1.0	3.45525
Brain Lower Grade Glioma_LGG_TCGA-DU-6404-02A-21R-A36H-07,TCGA-DU-6404-02B-11R-A36H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
H2AFZ_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Fluticasone	DeepCoverMOA Drug Mechanisms of Action	-1.0	-1.01
RPS2	Pathway Commons Protein-Protein Interactions	1.0	null
GSK343	DeepCoverMOA Drug Mechanisms of Action	1.0	0.7
SPIN3	Pathway Commons Protein-Protein Interactions	1.0	null
SW 620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06812
NP-69 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.664
KMS-12-PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.51274
FARSB	Pathway Commons Protein-Protein Interactions	1.0	null
TTN	Pathway Commons Protein-Protein Interactions	1.0	null
TEAD4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.48
POLR2A	Pathway Commons Protein-Protein Interactions	1.0	null
PRDX6	Pathway Commons Protein-Protein Interactions	1.0	null
VTN	Pathway Commons Protein-Protein Interactions	1.0	null
EP300_SK-N-SH_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCIH2066	CCLE Cell Line Gene CNV Profiles	-1.0	-1.6148
OPTN	Pathway Commons Protein-Protein Interactions	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A29W-06A-11R-A18U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCIH1869	CCLE Cell Line Gene CNV Profiles	1.0	2.68373
Asarone	DeepCoverMOA Drug Mechanisms of Action	1.0	0.38
NCOA7	Pathway Commons Protein-Protein Interactions	1.0	null
H3K4me1_HeLa-S3_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
PMC8202205-NIHMS1706275-supplement-Table_S1.xlsx-Def_End_D4_GATA6-dependent-SYMBOL_GATA6	Rummagene Transcription Factor Associations 2026	1.0	null
PMC5444746-oncotarget-08-30328-s002.xlsx-SI01_ChIPSeq_H3K9me_AR-Gene_Symbol_AR	Rummagene Transcription Factor Associations 2026	1.0	null
LUC7L2	Pathway Commons Protein-Protein Interactions	1.0	null
Glioblastoma	DisGeNET Gene-Disease Associations	1.0	null
REST	ChEA Transcription Factor Targets	1.0	null
FOXO1::FLI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.81
GMDS	Pathway Commons Protein-Protein Interactions	1.0	null
FXR	MotifMap Predicted Transcription Factor Targets	1.0	null
ventral entopeduncular nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.19462
ARHGAP32	Pathway Commons Protein-Protein Interactions	1.0	null
TLN1	Pathway Commons Protein-Protein Interactions	1.0	null
RPL10A	Pathway Commons Protein-Protein Interactions	1.0	null
GSE198380_0_v_1_phgdh_human	RummaGEO Gene Perturbation Signatures	-1.0	null
RB1_KD_GSE50532_657_human_OSTEOBLASTS	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
internal female genital organ	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
GSE221327_10_v_11_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
BL2212 (LATS1)	NURSA Protein Complexes	1.0	null
RARA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	50.4041
E2F4_MCF 10A_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Actin cytoskeleton	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
extracellular vesicular exosome	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
PRKAA1	Pathway Commons Protein-Protein Interactions	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-DU-6397-01A-11R-1708-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MPP1	Pathway Commons Protein-Protein Interactions	1.0	null
496100312_HIP_possible Alzheimer's disease_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.30389
U-CH2	Sanger Dependency Map Cancer Cell Line Proteomics	1.0	2.58618
NCI-H128	COSMIC Cell Line Gene Mutation Profiles	1.0	null
ipc298	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.692
BZW2	Pathway Commons Protein-Protein Interactions	1.0	null
intermediate gray layer of SC	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.89216
AHCY	Pathway Commons Protein-Protein Interactions	1.0	null
Depressed Mood	DisGeNET Gene-Phenotype Associations	1.0	null
GSE206729_4_v_1_trps1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
osteoblasts	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-0.997322
HNRNPA3	Pathway Commons Protein-Protein Interactions	1.0	null
HNRNPCL1	Pathway Commons Protein-Protein Interactions	1.0	null
lateral wings of the dorsal raphe nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.02533
DDX24	Pathway Commons Protein-Protein Interactions	1.0	null
Mesothelioma_MESO_TCGA-LK-A4O2-01A-11R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NOLC1	Pathway Commons Protein-Protein Interactions	1.0	null
FOS_MCF 10A_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
WM793B	Sanger Dependency Map Cancer Cell Line Proteomics	1.0	1.76305
PMC9287735-mmc8.xlsx-MI_Related_Genes-TNF_MITF	Rummagene Transcription Factor Associations 2026	1.0	null
DHX36	Pathway Commons Protein-Protein Interactions	1.0	null
ZNF217-24962896-MCF-7-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
CEBPA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.4257
NCI-H2595	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14081
NCIH2170	DepMap CRISPR Gene Dependency	1.0	2.12742
GSE176008_0_v_1_azacitidine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
HCC60	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.853506
EEF1G	Pathway Commons Protein-Protein Interactions	1.0	null
RPA2	Pathway Commons Protein-Protein Interactions	1.0	null
superficial stratum of TSPaA	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.24433
SRSF4	Pathway Commons Protein-Protein Interactions	1.0	null
HIST1H2AI	Pathway Commons Protein-Protein Interactions	1.0	null
ZW10	Pathway Commons Protein-Protein Interactions	1.0	null
HNRNPU	Pathway Commons Protein-Protein Interactions	1.0	null
r4 part of trigeminal sensory column	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.01342
NKRF	Pathway Commons Protein-Protein Interactions	1.0	null
GSE233679_5_v_3_nicotinamide_human	RummaGEO Drug Perturbation Signatures	1.0	null
SRC	Pathway Commons Protein-Protein Interactions	1.0	null
red nucleus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.18293
BL6644 (EPS15L1)	NURSA Protein Complexes	1.0	null
GATA2	ChEA Transcription Factor Targets	1.0	null
Polymeric cytoskeletal fiber	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
biological_process	GO Biological Process Annotations 2015	1.0	null
H3K4me1_CH12.LX_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
MYH4	Pathway Commons Protein-Protein Interactions	1.0	null
H3K9me3_IMR90	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
Chronic Pain	DisGeNET Gene-Phenotype Associations	1.0	null
6-Aminochrysene	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.33
LN18	DepMap CRISPR Gene Dependency	1.0	2.02011
VI, left, lateral hemisphere	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.06834
GSE193402_0_v_3_imatinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
MYH9	Pathway Commons Protein-Protein Interactions	1.0	null
JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.6198
Thoracic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.147
intergeniculate leaflet	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.05474
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-C5-A1M9-01A-11R-A13Y-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
arcuate nucleus of the hypothalamus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.968916
SC-8005 (ESR1)	NURSA Protein Complexes	1.0	null
SSR4	Pathway Commons Protein-Protein Interactions	1.0	null
PHB	Pathway Commons Protein-Protein Interactions	1.0	null
ACACA	Pathway Commons Protein-Protein Interactions	1.0	null
SNRPD3	Pathway Commons Protein-Protein Interactions	1.0	null
KCNAB1	Pathway Commons Protein-Protein Interactions	1.0	null
SMARCA4-23332759-OLIGODENDROCYTES-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
neuron part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.054321
HIST1H2BL	Pathway Commons Protein-Protein Interactions	1.0	null
respiratory chain complex iii	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.589295
RPS17	Pathway Commons Protein-Protein Interactions	1.0	null
G3BP2	Pathway Commons Protein-Protein Interactions	1.0	null
subbrachial nucleus, rostral part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.68337
outer CP in posteroinferior (ventral) parietal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.906452
GSE135514_8_v_7_dasatinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
LBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.2356
medial vestibular nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-2.12542
Stage Iia Colon Cancer Ajcc V7	DisGeNET Gene-Disease Associations	1.0	null
RRS1	Pathway Commons Protein-Protein Interactions	1.0	null
PMC7397849-supp_gad.338681.120_Supplemental_Table_S3.xlsx-S3M_Peaks_YAP1MAMLD1_TEAD4-Unnamed_11_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
intracellular non-membrane-bounded organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
GSE223893_2_v_10_setd2_human	RummaGEO Gene Perturbation Signatures	1.0	null
HNRNPDL	Pathway Commons Protein-Protein Interactions	1.0	null
PSMB1	Pathway Commons Protein-Protein Interactions	1.0	null
RPL21	Pathway Commons Protein-Protein Interactions	1.0	null
GSE238018_1_v_5_mxra8_human	RummaGEO Gene Perturbation Signatures	-1.0	null
5-R-Rivaroxaban	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.24
CAL29	DepMap CRISPR Gene Dependency	1.0	2.49858
GW311616	DeepCoverMOA Drug Mechanisms of Action	1.0	0.18
FOXK2	Pathway Commons Protein-Protein Interactions	1.0	null
short insular gyri, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.86145
YD8	CCLE Cell Line Gene CNV Profiles	1.0	2.37245
UNC80	Pathway Commons Protein-Protein Interactions	1.0	null
Liver cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.433
NuA4 histone acetyltransferase complex	GO Cellular Component Annotations 2025	1.0	null
periventricular stratum of r1BM	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.0725
NCIH1563	CCLE Cell Line Gene CNV Profiles	-1.0	-1.46121
Lymphocyte	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.15
FEN1	Pathway Commons Protein-Protein Interactions	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-EJ-7794-11A-01R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PSMC3	Pathway Commons Protein-Protein Interactions	1.0	null
cytoplasm	GO Cellular Component Annotations 2015	1.0	null
GSE157960_2_v_3_progesterone_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE253795_1_v_0_alkbh5_human	RummaGEO Gene Perturbation Signatures	1.0	null
NFYA_01_288	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	-1.0	-0.59701
RCHACV	DepMap CRISPR Gene Dependency	1.0	2.27788
GSE223893_2_v_9_setd2_human	RummaGEO Gene Perturbation Signatures	1.0	null
RPS18	Pathway Commons Protein-Protein Interactions	1.0	null
PAFAH1B2	Pathway Commons Protein-Protein Interactions	1.0	null
BL6096 (MOV10)	NURSA Protein Complexes	1.0	null
superficial stratum of TPaA	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.36834
CRKL	Pathway Commons Protein-Protein Interactions	1.0	null
BL9187 (C19orf62)	NURSA Protein Complexes	1.0	null
A427	DepMap CRISPR Gene Dependency	1.0	3.21118
LGALS7B	Pathway Commons Protein-Protein Interactions	1.0	null
RTCB	Pathway Commons Protein-Protein Interactions	1.0	null
GSE218060_5_v_3_decitabine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Paragigantocellular reticular nucleus, lateral part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.08891
SNRPA	Pathway Commons Protein-Protein Interactions	1.0	null
RAB10	Pathway Commons Protein-Protein Interactions	1.0	null
AP2A2	Pathway Commons Protein-Protein Interactions	1.0	null
PGK1	Pathway Commons Protein-Protein Interactions	1.0	null
SKRC31	CCLE Cell Line Gene CNV Profiles	1.0	1.44295
PFN2	Pathway Commons Protein-Protein Interactions	1.0	null
X, left, lateral hemisphere	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.81357
disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.040902
BL7864 (RAPGEF1)	NURSA Protein Complexes	1.0	null
H3K4me1_fibroblast of lung_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Bergenin	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.42
HSP90AA2	Pathway Commons Protein-Protein Interactions	1.0	null
GGH	Pathway Commons Protein-Protein Interactions	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-TM-A7CA-01A-21R-A33Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
AMPD1	Pathway Commons Protein-Protein Interactions	1.0	null
Prenatal Exposure Delayed Effects	CTD Gene-Disease Associations	1.0	1.60198
HCC70	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.940271
Prostate adenocarcinoma_PRAD_TCGA-EJ-5531-01A-01R-1580-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SNRNP70	Pathway Commons Protein-Protein Interactions	1.0	null
PMC9010637-mmc6.xlsx-5D-Figure_5D_Gene_Expression_Zhou_et_al_Application_of_SP3-Rox_to_identify_redox_changes_during_T_cell_maturation_SP3	Rummagene Transcription Factor Associations 2026	1.0	null
AR-22383394-PROSTATE-CANCER-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
membrane part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.044451
motor nucleus of trigeminal nerve, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.399
496100358_HIP_no dementia_TBI_95-99_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.19806
purine nucleotide binding	GO Molecular Function Annotations 2015	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-FR-A2OS-01A-11R-A21D-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hsa-miR-548n	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
membrane-bounded organelle	GO Cellular Component Annotations 2015	1.0	null
PCBP1	Pathway Commons Protein-Protein Interactions	1.0	null
protein kinase binding	GO Molecular Function Annotations 2025	1.0	null
H2AFX	Pathway Commons Protein-Protein Interactions	1.0	null
ACTA1	Pathway Commons Protein-Protein Interactions	1.0	null
CyPPA	DeepCoverMOA Drug Mechanisms of Action	1.0	0.68
Cerebral creatine deficiency syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.181
PI4KA	Pathway Commons Protein-Protein Interactions	1.0	null
Sleeplessness	DisGeNET Gene-Phenotype Associations	1.0	null
GSE148494,GSE182513_1_v_0_hoxd13_human	RummaGEO Gene Perturbation Signatures	1.0	null
SMCHD1	Pathway Commons Protein-Protein Interactions	1.0	null
PMC10335677-pbio.3002161.s009.xls-MLL_siRNA_DEGs-Ensembl_ID_KMT2A	Rummagene Transcription Factor Associations 2026	1.0	null
CCT4	Pathway Commons Protein-Protein Interactions	1.0	null
H3K9me3_H1	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
EBNA1BP2	Pathway Commons Protein-Protein Interactions	1.0	null
IMPDH2	Pathway Commons Protein-Protein Interactions	1.0	null
DDX3X	Pathway Commons Protein-Protein Interactions	1.0	null
Lhx4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.2139
parabigeminal nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.81181
BAG2	Pathway Commons Protein-Protein Interactions	1.0	null
NCI-H209	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.83769
PRPF6	Pathway Commons Protein-Protein Interactions	1.0	null
PRKAG1	Pathway Commons Protein-Protein Interactions	1.0	null
AGO2	Pathway Commons Protein-Protein Interactions	1.0	null
H3K27ac_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
HTT	Pathway Commons Protein-Protein Interactions	1.0	null
BL3061 (UBR4)	NURSA Protein Complexes	1.0	null
HTR7	Pathway Commons Protein-Protein Interactions	1.0	null
r1 part of vestibular nucleus Y	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.23209
GSE112358,GSE112359_0_v_1_med23_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
posterobasal nucleus, intermediate part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.07185
Brain Lower Grade Glioma_LGG_TCGA-DU-5870-02A-12R-A36H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NSC95682	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.68
hsa-miR-3163	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
BL119 (ATR)	NURSA Protein Complexes	1.0	null
VDAC2	Pathway Commons Protein-Protein Interactions	1.0	null
MDAMB231	DepMap CRISPR Gene Dependency	1.0	2.4279
HDLM2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.43973
HEP_3B2_1-7	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BRIX1	Pathway Commons Protein-Protein Interactions	1.0	null
PMC11330984-41467_2024_51229_MOESM6_ESM.xlsx-MYC_UP-ID_SYMBOL_MYC	Rummagene Transcription Factor Associations 2026	1.0	null
VZ in superolateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.03578
Nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.103
496100338_HIP_probable Alzheimer's disease_no TBI_79_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.16825
WDR45B	Pathway Commons Protein-Protein Interactions	1.0	null
LS1034	DepMap CRISPR Gene Dependency	1.0	3.16847
BCL11A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.4289
HNRNPA0	Pathway Commons Protein-Protein Interactions	1.0	null
intermediate white layer of SC	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.11146
TROVE2	Pathway Commons Protein-Protein Interactions	1.0	null
Boc-4mesyloxypiperidine	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.39
NR3C1-23031785-PC12-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
NCL	Pathway Commons Protein-Protein Interactions	1.0	null
cytoplasm	LOCATE Predicted Protein Localization Annotations	1.0	null
axon	GO Cellular Component Annotations 2025	1.0	null
GSE173873_2_v_3_stra8_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
SNU1033	DepMap CRISPR Gene Dependency	1.0	4.3577
BL3118 (PPP4R2)	NURSA Protein Complexes	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-YL-A8SF-01A-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
TP53	ChEA Transcription Factor Targets	1.0	null
TRIM28_U2OS_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Lobule III, granular layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.19809
Adrenocortical Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
GSE78199_2_v_1_tamoxifen_human	RummaGEO Drug Perturbation Signatures	1.0	null
Primary somatosensory area, trunk, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.01703
AAMP	Pathway Commons Protein-Protein Interactions	1.0	null
EZH2_mammary epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SLC25A5	Pathway Commons Protein-Protein Interactions	1.0	null
HSPB1	Pathway Commons Protein-Protein Interactions	1.0	null
Blood	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.167
GATA2	JASPAR Predicted Transcription Factor Targets	1.0	null
888	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.9194
SIRT3_KO_GDS4817_416_mouse_liver	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
G96	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.975222
GSE218060_1_v_4_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
Ornithine carbamoyltransferase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.883
PROX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.8149
Atrophy	CTD Gene-Disease Associations	1.0	1.26947
CDK13	Pathway Commons Protein-Protein Interactions	1.0	null
TEAD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.544
MYLK2	Pathway Commons Protein-Protein Interactions	1.0	null
ECC10	Sanger Dependency Map Cancer Cell Line Proteomics	-1.0	-2.14653
RASSF5	Pathway Commons Protein-Protein Interactions	1.0	null
STK235555	DeepCoverMOA Drug Mechanisms of Action	1.0	0.61
Brahma complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.99
Brain - Nucleus accumbens (basal ganglia)	GTEx Tissue Gene Expression Profiles 2023	1.0	2.65917
PMC8040704-jcav12p2673s2.xlsx-Up-regulated_genes_in_EBF1-Unnamed_0_EBF1	Rummagene Transcription Factor Associations 2026	1.0	null
PMC7895828-41419_2021_3488_MOESM3_ESM.xlsx-Sheet1-Supplementary_Table_3_List_of_deregulated_genes_in_c-MYC_altered_human_HCC_from_TCGA_LIHC_dataset_MYC	Rummagene Transcription Factor Associations 2026	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-HC-7817-01B-11R-A29R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
FDFT1	Pathway Commons Protein-Protein Interactions	1.0	null
cell culture	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.068771
NOP10	Pathway Commons Protein-Protein Interactions	1.0	null
XPO1	Pathway Commons Protein-Protein Interactions	1.0	null
episupraoptic nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.2975
FLCN	Pathway Commons Protein-Protein Interactions	1.0	null
496100420_PCx_probable Alzheimer's disease_no TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.83854
H4/H2A histone acetyltransferase complex	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
Traveler'S Diarrhea	DisGeNET Gene-Disease Associations	1.0	null
NERF2-26677805-CHIP-SEQ-MACROPHAGESS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
CCBL2	Pathway Commons Protein-Protein Interactions	1.0	null
Mild Cognitive Disorder	DisGeNET Gene-Disease Associations	1.0	null
HCC1954	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.861108
XRN2	Pathway Commons Protein-Protein Interactions	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-YL-A9WJ-01A-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PKM	Pathway Commons Protein-Protein Interactions	1.0	null
ROCK1	Pathway Commons Protein-Protein Interactions	1.0	null
DLAT	Pathway Commons Protein-Protein Interactions	1.0	null
PAICS	Pathway Commons Protein-Protein Interactions	1.0	null
FOS::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.0718
RPL18A	Pathway Commons Protein-Protein Interactions	1.0	null
GRB2	Pathway Commons Protein-Protein Interactions	1.0	null
DLD	Pathway Commons Protein-Protein Interactions	1.0	null
hsa-miR-548e	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
CIRBP	Pathway Commons Protein-Protein Interactions	1.0	null
EXOSC4	Pathway Commons Protein-Protein Interactions	1.0	null
hsa-miR-192	TargetScan Predicted Conserved microRNA Targets	1.0	0.361556
uterine endometrial cancer cell	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
IPO5	Pathway Commons Protein-Protein Interactions	1.0	null
H3K9me3_erythroblast_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
SLC25A1	Pathway Commons Protein-Protein Interactions	1.0	null
SRRT	Pathway Commons Protein-Protein Interactions	1.0	null
FOXL1	JASPAR Predicted Transcription Factor Targets	1.0	null
MAP7D1	Pathway Commons Protein-Protein Interactions	1.0	null
BL2790 (PTEN)	NURSA Protein Complexes	1.0	null
KTN1	Pathway Commons Protein-Protein Interactions	1.0	null
CNGA3	Pathway Commons Protein-Protein Interactions	1.0	null
IQSEC1	Pathway Commons Protein-Protein Interactions	1.0	null
BL2390 (CUL4A)	NURSA Protein Complexes	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-85-A50M-01A-21R-A262-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
KP4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10685
XRCC5	Pathway Commons Protein-Protein Interactions	1.0	null
fMLF	DeepCoverMOA Drug Mechanisms of Action	1.0	0.3
GSE193588_1_v_2_pax3_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
H3K4me1_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
EIF3F	Pathway Commons Protein-Protein Interactions	1.0	null
GSE235066_4_v_3_cisplatin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
PMC8650352-JCB_202012097_DataS1.xlsx-VHL_KD_filteredPeptides-Gene_names_AR	Rummagene Transcription Factor Associations 2026	1.0	null
MRPS18B	Pathway Commons Protein-Protein Interactions	1.0	null
PPID	Pathway Commons Protein-Protein Interactions	1.0	null
GSE71468,GSE76476_2_v_3_rbfox1_human	RummaGEO Gene Perturbation Signatures	1.0	null
hsa-miR-556-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
GSE221327_1_v_9_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
CEBPD-23245923-MEF-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
intracellular organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
Inflammation mediated by chemokine and cytokine signaling pathway	PANTHER Pathways	1.0	null
BEND5	Pathway Commons Protein-Protein Interactions	1.0	null
superficial stratum of r2BL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.18577
SEC24A	Pathway Commons Protein-Protein Interactions	1.0	null
EPPK1	Pathway Commons Protein-Protein Interactions	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-AS-3777-01A-01R-0864-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BL9062 (CDC6)	NURSA Protein Complexes	1.0	null
septopallidal shell area	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.21045
MTPN	Pathway Commons Protein-Protein Interactions	1.0	null
SF3B2	Pathway Commons Protein-Protein Interactions	1.0	null
CFL2	Pathway Commons Protein-Protein Interactions	1.0	null
TRIM45	Pathway Commons Protein-Protein Interactions	1.0	null
IDI1	Pathway Commons Protein-Protein Interactions	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-70-6722-01A-11R-1820-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ATP6V1B2	Pathway Commons Protein-Protein Interactions	1.0	null
MARS	Pathway Commons Protein-Protein Interactions	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-63-A5MW-01A-11R-A26W-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hsa-miR-146a	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
PMC9464213-41467_2022_33063_MOESM9_ESM.xlsx-BNC2_proteins-gene_name_BNC2	Rummagene Transcription Factor Associations 2026	1.0	null
UBE2M	Pathway Commons Protein-Protein Interactions	1.0	null
Fatigue	DisGeNET Gene-Phenotype Associations	1.0	null
PMC9950457-mmc3.xlsx-GRHL2_binding_sites-RBBP8NL_GRHL2	Rummagene Transcription Factor Associations 2026	1.0	null
PC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.906106
Esophageal adenocarcinoma x smoking interaction	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.61549
H3K9me3_skeletal muscle myoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
PAK4	Pathway Commons Protein-Protein Interactions	1.0	null
CTSD	Pathway Commons Protein-Protein Interactions	1.0	null
YTHDF2	Pathway Commons Protein-Protein Interactions	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-A6JT-01A-11R-A31N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CTCF_GM20000_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GSE215086_4_v_7_batf_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Bed nuclei of the stria terminalis, anterior division, rhomboid nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.13516
ZC3H4	Pathway Commons Protein-Protein Interactions	1.0	null
BL8445 (MAP2K1)	NURSA Protein Complexes	1.0	null
BL703 (TBK1)	NURSA Protein Complexes	1.0	null
PMC7450072-41598_2020_71096_MOESM1_ESM.xlsx-Table3_SS_vs_AA_MP-Gene_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
MKN-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01287
GSE226452_1_v_2_imiquimod_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
NCI-H1703	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.853506
H3K9me3_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
CUL5	Pathway Commons Protein-Protein Interactions	1.0	null
digestive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060257
H3K36me3_Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
COR-L88	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.24097
BL1038 (RCOR1)	NURSA Protein Complexes	1.0	null
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.050379
ML218	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.35
AN3 CA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.999301
POLR2C	Pathway Commons Protein-Protein Interactions	1.0	null
L755507	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.41
FOS_MCF 10A_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ventral part of CoP	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.33201
GSE206729_2_v_0_trps1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE128076_1_v_3_doxycycline_human	RummaGEO Drug Perturbation Signatures	1.0	null
non-membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
SAMHD1	Pathway Commons Protein-Protein Interactions	1.0	null
axonogenesis	GO Biological Process Annotations 2025	1.0	null
ELK1::HOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.354
HSPA1B	Pathway Commons Protein-Protein Interactions	1.0	null
NONO	Pathway Commons Protein-Protein Interactions	1.0	null
LOVO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.14974
LGALS3BP	Pathway Commons Protein-Protein Interactions	1.0	null
CJUN-26792858-CHIP-SEQ-BT549-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
IGF2BP2	Pathway Commons Protein-Protein Interactions	1.0	null
HCC2157	CCLE Cell Line Gene CNV Profiles	1.0	2.12781
hsa-miR-890	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
DAZAP1	Pathway Commons Protein-Protein Interactions	1.0	null
hsa-miR-620	TargetScan Predicted Conserved microRNA Targets	1.0	1.45615
FOSL1::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.094
PMC11769652-EHF2-12-250-s001.xlsx-Sheet1-ZEB1_ZEB1	Rummagene Transcription Factor Associations 2026	1.0	null
PAX2	JASPAR Predicted Transcription Factor Targets	1.0	null
MYH8	Pathway Commons Protein-Protein Interactions	1.0	null
Renal inner medulla	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.566
BL8550 (ITPR1)	NURSA Protein Complexes	1.0	null
GSE233679_5_v_8_nicotinamide_human	RummaGEO Drug Perturbation Signatures	1.0	null
TIA1	Pathway Commons Protein-Protein Interactions	1.0	null
Nicotinic acetylcholine receptor signaling pathway	PANTHER Pathways	1.0	null
GTF2F1	ENCODE Transcription Factor Targets	1.0	null
PPM1A	Pathway Commons Protein-Protein Interactions	1.0	null
Medial geniculate complex, dorsal part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.43581
TTLL12	Pathway Commons Protein-Protein Interactions	1.0	null
LHX5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.4329
PMC12069319-Table1.xlsx-OCAB_p40_BirA-Gene_Symbol_POU2AF1	Rummagene Transcription Factor Associations 2026	1.0	null
NUP210	Pathway Commons Protein-Protein Interactions	1.0	null
hsa-miR-548l	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
KRT71	Pathway Commons Protein-Protein Interactions	1.0	null
COMT	Pathway Commons Protein-Protein Interactions	1.0	null
Migalastat	DeepCoverMOA Drug Mechanisms of Action	1.0	0.37
pontine raphe nucleus, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.87805
QARS	Pathway Commons Protein-Protein Interactions	1.0	null
GSE240030,GSE252532_0_v_2_atrx_human	RummaGEO Gene Perturbation Signatures	-1.0	null
pyrazinamide_mus musculus_gpl6246_gse48027	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
INA	Pathway Commons Protein-Protein Interactions	1.0	null
PMC12271601-mmc2.xlsx-OUT_cells_01-Gene_Symbol_TCF23	Rummagene Transcription Factor Associations 2026	1.0	null
superficial stratum of m1AL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.36317
RUNX2-22187159-PCA-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
HIST1H1C	Pathway Commons Protein-Protein Interactions	1.0	null
H1F0	Pathway Commons Protein-Protein Interactions	1.0	null
extracellular space	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
GSE193402_0_v_2_imatinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
AT 406	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.35
Conventional (Clear Cell) Renal Cell Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
BL3030 (ERBB2)	NURSA Protein Complexes	1.0	null
BL1327 (FOXO3)	NURSA Protein Complexes	1.0	null
GSE138789_0_v_1_metformin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
EZR	Pathway Commons Protein-Protein Interactions	1.0	null
superficial stratum of VTTh	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.15123
WDR26	Pathway Commons Protein-Protein Interactions	1.0	null
GSE142210_2_v_5_panobinostat_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Cytoplasmic side of nuclear pore	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.821
CNN3	Pathway Commons Protein-Protein Interactions	1.0	null
TFG	Pathway Commons Protein-Protein Interactions	1.0	null
TAB1	Pathway Commons Protein-Protein Interactions	1.0	null
PMC8104016-hcg-12-e002353-s006.xlsx-mTHP-1-LPS_Prom-Prom_Prom-GWAS-RefSeq_Name_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
FERMT3	Pathway Commons Protein-Protein Interactions	1.0	null
PSMF1	NURSA Protein-Protein Interactions	1.0	0.15278
GSE221327_4_v_9_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
Gastrointestinal Carcinoid Tumor	DisGeNET Gene-Disease Associations	1.0	null
HNRNPH2	Pathway Commons Protein-Protein Interactions	1.0	null
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-EK-A2H1-01A-11R-A180-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MYC	ENCODE Transcription Factor Targets	1.0	null
SERPINB4	Pathway Commons Protein-Protein Interactions	1.0	null
APOBEC3C	Pathway Commons Protein-Protein Interactions	1.0	null
mesomere 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.34974
lateral part of r10B	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.13522
Selisistat	DeepCoverMOA Drug Mechanisms of Action	-1.0	-1.33
Primary somatosensory area, mouth, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.44646
supraoptic nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.55865
MO-T	COSMIC Cell Line Gene Mutation Profiles	1.0	null
cell part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041359
TRIM28	Pathway Commons Protein-Protein Interactions	1.0	null
TMEM160	Pathway Commons Protein-Protein Interactions	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-39-5022-01A-21R-1820-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Ppara	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	16.3589
KRT18	Pathway Commons Protein-Protein Interactions	1.0	null
ZYX	Pathway Commons Protein-Protein Interactions	1.0	null
EIF2S3	Pathway Commons Protein-Protein Interactions	1.0	null
LASP1	Pathway Commons Protein-Protein Interactions	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-B8-5552-11A-01R-1672-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cellular_component	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041399
hsa-miR-3613-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
r3 part of trigeminal transition zone	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.4793
ANXA4	Pathway Commons Protein-Protein Interactions	1.0	null
Perturb_7598_KD_PARP1_SRP410217	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	20.0
UK 356618	DeepCoverMOA Drug Mechanisms of Action	-1.0	-1.55
SUV420H2	Pathway Commons Protein-Protein Interactions	1.0	null
carcinoma cell	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
PMC6137307-mmc2.xlsx-STAT2-IFNa-Table_S1_STAT2-IFNa_Related_to_Figures_1_4_STAT2	Rummagene Transcription Factor Associations 2026	1.0	null
Heavy chain disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.174
RT-112	Sanger Dependency Map Cancer Cell Line Proteomics	1.0	2.11092
mammillary body, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.4713
ATP5A1	Pathway Commons Protein-Protein Interactions	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-EJ-7315-11A-01R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SRSF3	Pathway Commons Protein-Protein Interactions	1.0	null
EPRS	Pathway Commons Protein-Protein Interactions	1.0	null
MAT2A	Pathway Commons Protein-Protein Interactions	1.0	null
a-ABIN1 (TNIP1)	NURSA Protein Complexes	1.0	null
GSE210101,GSE210114_8_v_3_urod_human	RummaGEO Gene Perturbation Signatures	1.0	null
hypoglossal nucleus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.24387
PTPN1	Pathway Commons Protein-Protein Interactions	1.0	null
EWSR1	Pathway Commons Protein-Protein Interactions	1.0	null
TRIM41	Pathway Commons Protein-Protein Interactions	1.0	null
ALDH2	Pathway Commons Protein-Protein Interactions	1.0	null
Lobule III, molecular layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.14158
Malnutrition	DisGeNET Gene-Disease Associations	1.0	null
TPM3	Pathway Commons Protein-Protein Interactions	1.0	null
TMED10	Pathway Commons Protein-Protein Interactions	1.0	null
hsa-miR-4531	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
TK-10	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.951723
kinase binding	GO Molecular Function Annotations 2025	1.0	null
RPL13A	Pathway Commons Protein-Protein Interactions	1.0	null
Kidney Chromophobe_KICH_TCGA-KL-8332-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Pain	DisGeNET Gene-Phenotype Associations	1.0	null
SZ in subgenual cingulate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.14388
ANXA1	Pathway Commons Protein-Protein Interactions	1.0	null
TMN 355	DeepCoverMOA Drug Mechanisms of Action	1.0	0.35
AARS	Pathway Commons Protein-Protein Interactions	1.0	null
Supraoptic nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.16851
GDI2	Pathway Commons Protein-Protein Interactions	1.0	null
GTF2I	Pathway Commons Protein-Protein Interactions	1.0	null
Carcinoma, Ovarian Epithelial	DisGeNET Gene-Disease Associations	1.0	null
BL7968 (ZAK)	NURSA Protein Complexes	1.0	null
BL697 (CC2D1A)	NURSA Protein Complexes	1.0	null
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.039536
GSE239844_11_v_5_crizotinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
PAX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.5581
NOM1	Pathway Commons Protein-Protein Interactions	1.0	null
LSM2	Pathway Commons Protein-Protein Interactions	1.0	null
RBM15	Pathway Commons Protein-Protein Interactions	1.0	null
BRK1	Pathway Commons Protein-Protein Interactions	1.0	null
Kidney renal papillary cell carcinoma_KIRP_TCGA-GL-7966-01A-11R-2204-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
superficial stratum of r4Tr	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.99078
megacystis-microcolon-intestinal hypoperistalsis syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.33
PRPF4	Pathway Commons Protein-Protein Interactions	1.0	null
NCI-H1651	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.855749
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-6961-01A-21R-1915-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
LY2365109	DeepCoverMOA Drug Mechanisms of Action	1.0	0.31
EIF6	Pathway Commons Protein-Protein Interactions	1.0	null
anterior cortical amygdaloid area	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.15366
TUBB	Pathway Commons Protein-Protein Interactions	1.0	null
GSE232944_1_v_0_ctnnb1_human	RummaGEO Gene Perturbation Signatures	1.0	null
RFC2	Pathway Commons Protein-Protein Interactions	1.0	null
HMB-Val-Ser-Leu-VE	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.27
GSE217115_2_v_5_alectinib_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
ESYT2	Pathway Commons Protein-Protein Interactions	1.0	null
DNAJA2	Pathway Commons Protein-Protein Interactions	1.0	null
FBXO25	Pathway Commons Protein-Protein Interactions	1.0	null
RCC2	Pathway Commons Protein-Protein Interactions	1.0	null
Rectum adenocarcinoma_READ_TCGA-EI-6507-01A-11R-1736-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.040836
GSE229070,GSE229071_0_v_2_sotorasib_human	RummaGEO Drug Perturbation Signatures	1.0	null
NUP155	Pathway Commons Protein-Protein Interactions	1.0	null
ZFP42	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.2158
GARS	Pathway Commons Protein-Protein Interactions	1.0	null
PMC7291745-12967_2020_2407_MOESM2_ESM.xlsx-Table_S1D_CCF_pairs-locus_PITX1	Rummagene Transcription Factor Associations 2026	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-46-3769-01A-01R-0980-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RUNX2-22187159-PCA-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
DSC2	Pathway Commons Protein-Protein Interactions	1.0	null
GNB4	Pathway Commons Protein-Protein Interactions	1.0	null
mantle zone of SC	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.5291
inner CP in subgenual (subcallosal) cingulate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.20125
RPA3	Pathway Commons Protein-Protein Interactions	1.0	null
USP15	Pathway Commons Protein-Protein Interactions	1.0	null
intracellular organelle	GO Cellular Component Annotations 2015	1.0	null
SFPQ	Pathway Commons Protein-Protein Interactions	1.0	null
H3K9me3_osteoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
r11 part of spinal trigeminal nucleus, caudal part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.33201
Primary visual area, layer 4	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.92574
CLIC1	Pathway Commons Protein-Protein Interactions	1.0	null
PAK1	Pathway Commons Protein-Protein Interactions	1.0	null
Malignant Neoplasm Of Large Intestine	DisGeNET Gene-Disease Associations	1.0	null
PMC11336098-41598_2024_70235_MOESM1_ESM.pdf-220-ZBTB24_ZBTB24	Rummagene Transcription Factor Associations 2026	1.0	null
SF3B4	Pathway Commons Protein-Protein Interactions	1.0	null
YAP1	ChEA Transcription Factor Targets	1.0	null
ZRANB2	Pathway Commons Protein-Protein Interactions	1.0	null
496100632_HIP_no dementia_TBI_95-99_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.33079
rostral migratory stream	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.986731
upper limb region of M1	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.23962
Skin Cutaneous Melanoma_SKCM_TCGA-EB-A551-01A-21R-A27Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BL1601 (TSC1)	NURSA Protein Complexes	1.0	null
GLUD1	Pathway Commons Protein-Protein Interactions	1.0	null
EEF1B2	Pathway Commons Protein-Protein Interactions	1.0	null
Stage Iii Colorectal Cancer Ajcc V7	DisGeNET Gene-Disease Associations	1.0	null
H3K4me2_mammary epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
SR	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29403
GSE248935_1_v_0_cd14_human	RummaGEO Gene Perturbation Signatures	-1.0	null
related	GeneRIF Biological Term Annotations	1.0	null
GSE242333_0_v_1_sorafenib_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE173873_2_v_13_stra8_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
STK832240	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.35
intermediate stratum of isLim	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.19944
hsa-miR-3922-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
Sox3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	16.337
NOP56	Pathway Commons Protein-Protein Interactions	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-S9-A6TV-01A-12R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
alphaIIb-beta3 integrin-fibronectin-tissue transglutaminase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.442
PMC9530161-41419_2022_5296_MOESM2_ESM.xlsx-Tab5_KDM5C-KD-down_genes-Table_5_Down_regulated_genes_in_KDM5C-KD_KDM5C-KD1_Control_overlap_KDM5C-KD2_Control_AR	Rummagene Transcription Factor Associations 2026	1.0	null
PSMG2	Pathway Commons Protein-Protein Interactions	1.0	null
ARID1B_01_298	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	-1.0	-0.9602
digits	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	0.958547
RBM14	Pathway Commons Protein-Protein Interactions	1.0	null
KEAP1	Pathway Commons Protein-Protein Interactions	1.0	null
RPS3	Pathway Commons Protein-Protein Interactions	1.0	null
HCT15_LARGE_INTESTINE	CCLE Cell Line Proteomics	1.0	2.60153
EIF5A2	Pathway Commons Protein-Protein Interactions	1.0	null
carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052222
RALY	Pathway Commons Protein-Protein Interactions	1.0	null
hepatoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.450657
small intestine	GTEx Tissue Gene Expression Profiles	-1.0	-2.03586
BL2178 (RICTOR)	NURSA Protein Complexes	1.0	null
NAP1L1	Pathway Commons Protein-Protein Interactions	1.0	null
IGF2BP1	Pathway Commons Protein-Protein Interactions	1.0	null
GSE245270_1_v_3_isoproterenol_human	RummaGEO Drug Perturbation Signatures	1.0	null
PGAM2	Pathway Commons Protein-Protein Interactions	1.0	null
superficial stratum of RtC	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.67871
oxidoreductase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.079704
hsa-miR-664	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
TPI1	Pathway Commons Protein-Protein Interactions	1.0	null
HIST1H2AB	Pathway Commons Protein-Protein Interactions	1.0	null
mbl2	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.797
FOXO6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.3479
GSE129241_3_v_0_valproic acid_human	RummaGEO Drug Perturbation Signatures	-1.0	null
BROX	Pathway Commons Protein-Protein Interactions	1.0	null
DOK7	Pathway Commons Protein-Protein Interactions	1.0	null
inner CP in ventromedial extrastriate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.20979
RBM12B	Pathway Commons Protein-Protein Interactions	1.0	null
AR-22383394-PROSTATE_CANCER-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
WASL	Pathway Commons Protein-Protein Interactions	1.0	null
NUDT21	Pathway Commons Protein-Protein Interactions	1.0	null
CDSN	Pathway Commons Protein-Protein Interactions	1.0	null
autonomic nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.478534
RPL34	Pathway Commons Protein-Protein Interactions	1.0	null
HIST1H1B	Pathway Commons Protein-Protein Interactions	1.0	null
subcallosal cingulate gyrus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.19747
H3K27ac_osteoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
SG in rostral perirhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.955978
intracellular non-membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.045896
H3K9me3_myotube_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
ARRB1	Pathway Commons Protein-Protein Interactions	1.0	null
IQGAP2	Pathway Commons Protein-Protein Interactions	1.0	null
CNOT1	Pathway Commons Protein-Protein Interactions	1.0	null
H3K9me3_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Spinal nucleus of the trigeminal, oral part, ventrolateral part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.13838
GSE218060_1_v_0_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
RPL4	Pathway Commons Protein-Protein Interactions	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CR-6484-01A-11R-1873-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GLA	Pathway Commons Protein-Protein Interactions	1.0	null
CTSA	Pathway Commons Protein-Protein Interactions	1.0	null
Inferior colliculus, external nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.97077
GSE190555,GSE190557_2_v_0_chd4_human	RummaGEO Gene Perturbation Signatures	1.0	null
RANGAP1	Pathway Commons Protein-Protein Interactions	1.0	null
MFAP4	Pathway Commons Protein-Protein Interactions	1.0	null
SDHB	Pathway Commons Protein-Protein Interactions	1.0	null
UM-UC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.45065
JUN	ENCODE Transcription Factor Targets	1.0	null
GMPPA	Pathway Commons Protein-Protein Interactions	1.0	null
Myocardial Infarction	DisGeNET Gene-Disease Associations	1.0	null
Squamous Cell Carcinoma Of The Head And Neck	DisGeNET Gene-Disease Associations	1.0	null
PPP1CA	Pathway Commons Protein-Protein Interactions	1.0	null
RO82-W-1	Sanger Dependency Map Cancer Cell Line Proteomics	1.0	2.15341
FADU	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.906106
subgenual (subcallosal) division of MFC (area 25)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.948051
LSM12	Pathway Commons Protein-Protein Interactions	1.0	null
FBL	Pathway Commons Protein-Protein Interactions	1.0	null
SUZ12_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KYSE150_OESOPHAGUS	CCLE Cell Line Proteomics	1.0	2.59195
SIPA1	Pathway Commons Protein-Protein Interactions	1.0	null
hsa-miR-188-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
A 803467	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.41
STAT3_MCF 10A_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CSNK2A2	Pathway Commons Protein-Protein Interactions	1.0	null
NuA4 histone acetyltransferase complex	GO Cellular Component Annotations 2023	1.0	null
GSE221327_1_v_11_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
TSR2	Pathway Commons Protein-Protein Interactions	1.0	null
CIZ1	Pathway Commons Protein-Protein Interactions	1.0	null
TTC9C	Pathway Commons Protein-Protein Interactions	1.0	null
GSE233679_6_v_10_nicotinamide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
UT7	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34194
UBA5	Pathway Commons Protein-Protein Interactions	1.0	null
MRPS25	Pathway Commons Protein-Protein Interactions	1.0	null
Puberty, Precocious	CTD Gene-Disease Associations	1.0	1.73089
extracellular membrane-bounded organelle	GO Cellular Component Annotations 2015	1.0	null
CBR3	Pathway Commons Protein-Protein Interactions	1.0	null
Nasopharynx epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.613
OVSAHO	CCLE Cell Line Gene CNV Profiles	-1.0	-1.87565
KRT6B	Pathway Commons Protein-Protein Interactions	1.0	null
BL1789 (PAXIP1)	NURSA Protein Complexes	1.0	null
Dux	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	22.1927
superficial stratum of r1BI	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.05582
HS 936.T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.944872
posterior hypothalamic nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.871471
MYH3	Pathway Commons Protein-Protein Interactions	1.0	null
Lung adenocarcinoma_LUAD_TCGA-64-1679-01A-21R-2066-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Pulmonary Arterial Hypertension	DisGeNET Gene-Disease Associations	1.0	null
ZCCHC8	Pathway Commons Protein-Protein Interactions	1.0	null
Lung adenocarcinoma_LUAD_TCGA-75-6205-01A-11R-1755-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Dantrolene	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.48
H2AFV	Pathway Commons Protein-Protein Interactions	1.0	null
a-PTEN (WG) (PTEN)	NURSA Protein Complexes	1.0	null
H3K4me2_A549_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
SF3B1	Pathway Commons Protein-Protein Interactions	1.0	null
RPLP0	Pathway Commons Protein-Protein Interactions	1.0	null
r4 part of descending trigeminal sensory nucleus, oral part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.99078
SAP30_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27ac_astrocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
PPARD	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.9155
PMC12774775-mmc2.xlsx-PAR_RARG_merge_q5_Narrow_subKO-ENSEMBL_ID_RARG	Rummagene Transcription Factor Associations 2026	1.0	null
PAK3	Pathway Commons Protein-Protein Interactions	1.0	null
BL5966 (RANBP3)	NURSA Protein Complexes	1.0	null
U-266	Sanger Dependency Map Cancer Cell Line Proteomics	-1.0	-2.24473
HNRNPUL2	Pathway Commons Protein-Protein Interactions	1.0	null
OFD1	Pathway Commons Protein-Protein Interactions	1.0	null
BL1686 (BUB3)	NURSA Protein Complexes	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-EJ-5495-01A-01R-1580-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE181513_2_v_1_usp7_human	RummaGEO Gene Perturbation Signatures	1.0	null
TRIM21	Pathway Commons Protein-Protein Interactions	1.0	null
PMC12069319-Table1.xlsx-OCAB_p34_BirA-Gene_Symbol_POU2AF1	Rummagene Transcription Factor Associations 2026	1.0	null
ERBB2	Pathway Commons Protein-Protein Interactions	1.0	null
ZNF354C	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.125
KRT3	Pathway Commons Protein-Protein Interactions	1.0	null
CANX	Pathway Commons Protein-Protein Interactions	1.0	null
NCI-H2081	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02829
HNRNPC	Pathway Commons Protein-Protein Interactions	1.0	null
TUBA1A	Pathway Commons Protein-Protein Interactions	1.0	null
Hs-578-T	Sanger Dependency Map Cancer Cell Line Proteomics	1.0	2.52936
H2BFS	Pathway Commons Protein-Protein Interactions	1.0	null
S100A16	Pathway Commons Protein-Protein Interactions	1.0	null
MITF	ChEA Transcription Factor Targets	1.0	null
SNRPD2	Pathway Commons Protein-Protein Interactions	1.0	null
SERPINB13	Pathway Commons Protein-Protein Interactions	1.0	null
SREBF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.4774
m1Lim part of the midbrain reticular formation	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.75245
EZH2_fibroblast of dermis_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GSE233679_14_v_9_nicotinamide_human	RummaGEO Drug Perturbation Signatures	1.0	null
Perturb_2699_KD_EXOSC8_ERP005752	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	6.56741
ECC10	CCLE Cell Line Gene CNV Profiles	-1.0	-3.20939
RERFGC1B	CCLE Cell Line Gene CNV Profiles	-1.0	-2.00595
adenocarcinoma cell	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
CAPN1	Pathway Commons Protein-Protein Interactions	1.0	null
WM-278 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.751
TC-N 22A	DeepCoverMOA Drug Mechanisms of Action	1.0	0.3
GSE216540_1_v_6_fulvestrant_human	RummaGEO Drug Perturbation Signatures	1.0	null
NOP58	Pathway Commons Protein-Protein Interactions	1.0	null
ribonucleotide binding	GO Molecular Function Annotations 2015	1.0	null
Chronic Obstructive Airway Disease	DisGeNET Gene-Disease Associations	1.0	null
H3K9me3_astrocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
NFIC_ECC-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
stroma	GeneRIF Biological Term Annotations	1.0	null
MCM2	Pathway Commons Protein-Protein Interactions	1.0	null
GSE210101,GSE210114_0_v_3_urod_human	RummaGEO Gene Perturbation Signatures	-1.0	null
RXRA::VDR	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.9
PPP1CC	Pathway Commons Protein-Protein Interactions	1.0	null
BSX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.2663
HADHB	Pathway Commons Protein-Protein Interactions	1.0	null
TFAM	Pathway Commons Protein-Protein Interactions	1.0	null
uterus	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Heart Failure	DisGeNET Gene-Disease Associations	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-7434-11A-01R-2132-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
EVI1-22308434-SKOV3-HUMAN-OVARY-OVARIANCANCER	ChEA Transcription Factor Targets 2022	1.0	null
RPL37A	Pathway Commons Protein-Protein Interactions	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-LC-A66R-01A-41R-A30C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ro82w1	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.789
ARPC3	Pathway Commons Protein-Protein Interactions	1.0	null
Sox17	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	26.3155
LGMN	Pathway Commons Protein-Protein Interactions	1.0	null
DMD	Pathway Commons Protein-Protein Interactions	1.0	null
HCC1569	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GSE233679_6_v_11_nicotinamide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Sarcoma_SARC_TCGA-K1-A42W-01A-11R-A24X-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ATF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.1564
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-EX-A3L1-01A-11R-A32Y-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BL2555 (UHRF1)	NURSA Protein Complexes	1.0	null
CBC621 (ZNF687)	NURSA Protein Complexes	1.0	null
GSE214212_3_v_1_chd6_human	RummaGEO Gene Perturbation Signatures	1.0	null
MCM3	Pathway Commons Protein-Protein Interactions	1.0	null
Longissimus lumborum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.106
CA1 field, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.22446
ETV2::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.0922
OVSAHO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.75
CTCF	ENCODE Transcription Factor Targets	1.0	null
PTGES3	Pathway Commons Protein-Protein Interactions	1.0	null
Lung adenocarcinoma_LUAD_TCGA-55-6543-01A-11R-1755-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
globose nucleus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.03287
NCI-H2171	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.3766
PRKCB	Pathway Commons Protein-Protein Interactions	1.0	null
Arx	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	25.3003
frontal pole, right, inferior aspect	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-2.38029
FLOT1	Pathway Commons Protein-Protein Interactions	1.0	null
GSE165560_0_v_1_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCLE Cell Line Proteomics	1.0	2.5846
EXOSC3	Pathway Commons Protein-Protein Interactions	1.0	null
PPP2CA	Pathway Commons Protein-Protein Interactions	1.0	null
VZ in septal region	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.28006
PMC12749419-41598_2025_28826_MOESM3_ESM.xlsx-RFT_iBody3_triplicate-Genes_MBD1	Rummagene Transcription Factor Associations 2026	1.0	null
SAP30	ENCODE Transcription Factor Targets	1.0	null
SK-MEL-5	COSMIC Cell Line Gene Mutation Profiles	1.0	null
COCM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Mutation Profiles	1.0	null
STK38L	Pathway Commons Protein-Protein Interactions	1.0	null
GSE146982_4_v_5_metformin_human	RummaGEO Drug Perturbation Signatures	1.0	null
Adrenocortical carcinoma_ACC_TCGA-OR-A5JB-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE221327_8_v_0_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
posterior orbital gyrus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.08231
Cardiovascular system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.052
CCT2	Pathway Commons Protein-Protein Interactions	1.0	null
EP300	ENCODE Transcription Factor Targets	1.0	null
DARS	Pathway Commons Protein-Protein Interactions	1.0	null
SP in rostral midinferior temporal cortex (area 36)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.07321
midbrain reticular formation, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.91085
Subfertility	DisGeNET Gene-Disease Associations	1.0	null
DNAJB1	Pathway Commons Protein-Protein Interactions	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-CZ-5469-11A-01R-1503-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCI-H1666	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.879714
PPA1	Pathway Commons Protein-Protein Interactions	1.0	null
DNAJC7	Pathway Commons Protein-Protein Interactions	1.0	null
Spinal nucleus of the trigeminal, oral part, middle dorsomedial part, dorsal zone	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.71427
YBX1	Pathway Commons Protein-Protein Interactions	1.0	null
reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
SF3A3	Pathway Commons Protein-Protein Interactions	1.0	null
RPL13	Pathway Commons Protein-Protein Interactions	1.0	null
ARPC1B	Pathway Commons Protein-Protein Interactions	1.0	null
NSMAF	Pathway Commons Protein-Protein Interactions	1.0	null
NUP88	Pathway Commons Protein-Protein Interactions	1.0	null
STK869906	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.5
ZNF341	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.8788
SF3A1	Pathway Commons Protein-Protein Interactions	1.0	null
JNJ-38877605	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.42
ERF::FOXO1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.9549
SRRM2	Pathway Commons Protein-Protein Interactions	1.0	null
NCIH841	DepMap CRISPR Gene Dependency	1.0	2.69341
GSE110440_1_v_3_rad21_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Dlx2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.115
SW 982	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29403
CTCF_osteoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PLA1A	Pathway Commons Protein-Protein Interactions	1.0	null
JUP	Pathway Commons Protein-Protein Interactions	1.0	null
SRP9	Pathway Commons Protein-Protein Interactions	1.0	null
PMC10353540-Table_1.xlsx-HCC1954_AR_vs_HCC1954_A-Gene_Name_AR	Rummagene Transcription Factor Associations 2026	1.0	null
PF-04418948	DeepCoverMOA Drug Mechanisms of Action	1.0	0.26
Uterine endometrial cancer cell	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
GSE153871_4_v_3_cytarabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
CTNND2	Pathway Commons Protein-Protein Interactions	1.0	null
hsa-miR-153	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
CBX5	Pathway Commons Protein-Protein Interactions	1.0	null
TNRC6B	Pathway Commons Protein-Protein Interactions	1.0	null
AP2M1	Pathway Commons Protein-Protein Interactions	1.0	null
HSPD1	Pathway Commons Protein-Protein Interactions	1.0	null
496100389_HIP_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.70024
Brain Lower Grade Glioma_LGG_TCGA-FG-8191-01A-11R-2256-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RARB-27405468-CHIP-SEQ-BRAIN-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
Intestinal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.093
GSE197555_0_v_3_trametinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE221327_1_v_2_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
Lhx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	25.7599
COPS5	Pathway Commons Protein-Protein Interactions	1.0	null
SMYD3	Pathway Commons Protein-Protein Interactions	1.0	null
polymeric cytoskeletal fiber	GO Cellular Component Annotations 2025	1.0	null
superficial stratum of LAP	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.28439
ARRB2	Hub Proteins Protein-Protein Interactions	1.0	null
GAPVD1	NURSA Protein-Protein Interactions	1.0	1.15643
SET-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.69092
peduncular subparaventricular area	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.42155
intracellular non-membrane-bounded organelle	GO Cellular Component Annotations 2015	1.0	null
downregulated	GeneRIF Biological Term Annotations	1.0	null
MLLT4	Pathway Commons Protein-Protein Interactions	1.0	null
NECAP2	Pathway Commons Protein-Protein Interactions	1.0	null
BL5844 (ZFC3H1)	NURSA Protein Complexes	1.0	null
Quiflapon	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.48
TCF3_01_116	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	1.26572
H3K4me1_testis_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
NFKB1	Pathway Commons Protein-Protein Interactions	1.0	null
GSE65617_5_v_3_aire_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Fatty acid beta-oxidation multienzyme complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.029
NFIC	ENCODE Transcription Factor Targets	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-EJ-7786-11A-01R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
root tip	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.08501
Limb Ischemia	DisGeNET Gene-Disease Associations	1.0	null
BL2030 (RFWD2)	NURSA Protein Complexes	1.0	null
PICALM	Pathway Commons Protein-Protein Interactions	1.0	null
IRS4	Pathway Commons Protein-Protein Interactions	1.0	null
496100372_HIP_dementia_no TBI_84_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.24337
ZNF324	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.1415
JUN::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.0376
SW 948	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.855749
SRI	Pathway Commons Protein-Protein Interactions	1.0	null
BL7163 (DNAJC9)	NURSA Protein Complexes	1.0	null
KBTBD6	Pathway Commons Protein-Protein Interactions	1.0	null
SUPT5H	Pathway Commons Protein-Protein Interactions	1.0	null
BUB3	Pathway Commons Protein-Protein Interactions	1.0	null
PMC7445411-CPR-53-e12862-s006.xlsx-Sheet1-Supplementary_Table_S4_Gene_expression_profiling_of_NT-MSC_and_III-MSC_MSC	Rummagene Transcription Factor Associations 2026	1.0	null
SNU-C1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.19133
GSE146982_7_v_1_metformin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Crus II, left, paravermis	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.08703
Kidney Chromophobe_KICH_TCGA-KO-8405-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
UAMC00039	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.35
nucleus of the inferior collicular brachium, rostral part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.73491
BACH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.4589
DLST	Pathway Commons Protein-Protein Interactions	1.0	null
GSE245134_2_v_3_atg5_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
ZNF136	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.5239
ESYT1	Pathway Commons Protein-Protein Interactions	1.0	null
Familial (Fpah)	DisGeNET Gene-Disease Associations	1.0	null
H3K27ac_mammary epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-HC-7079-01A-11R-1965-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Pertussis	DisGeNET Gene-Disease Associations	1.0	null
core part of DTg	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.116
r11 part of the trigeminal column	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.33201
VUF11207	DeepCoverMOA Drug Mechanisms of Action	1.0	0.32
CCT3	Pathway Commons Protein-Protein Interactions	1.0	null
SNU-C5	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Nr2f6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	50.9399
RPL38	Pathway Commons Protein-Protein Interactions	1.0	null
GSE149880_2_v_3_tamoxifen_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
Lung adenocarcinoma_LUAD_TCGA-55-8619-01A-11R-2403-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
extracellular region part	GO Cellular Component Annotations 2015	1.0	null
PRH2	Pathway Commons Protein-Protein Interactions	1.0	null
Actin/actin-like conserved site	InterPro Predicted Protein Domain Annotations	1.0	null
DDOST	Pathway Commons Protein-Protein Interactions	1.0	null
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-C5-A1BF-01B-11R-A13Y-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
emboliform nucleus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.13901
XAV 939	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.44
Infralimbic area, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.51264
MTHFD1	Pathway Commons Protein-Protein Interactions	1.0	null
RPL26L1	Pathway Commons Protein-Protein Interactions	1.0	null
NAP1L4	Pathway Commons Protein-Protein Interactions	1.0	null
RDX	Pathway Commons Protein-Protein Interactions	1.0	null
RPL3	Pathway Commons Protein-Protein Interactions	1.0	null
FLNB	Pathway Commons Protein-Protein Interactions	1.0	null
Presenile Dementia	DisGeNET Gene-Disease Associations	1.0	null
RBMX	Pathway Commons Protein-Protein Interactions	1.0	null
HUWE1	Pathway Commons Protein-Protein Interactions	1.0	null
SRSF7	Pathway Commons Protein-Protein Interactions	1.0	null
NR2C1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.2542
H3K27me3_K562_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
extracellular vesicle	GO Cellular Component Annotations 2015	1.0	null
DDX21	Pathway Commons Protein-Protein Interactions	1.0	null
terminal subparaventricular area of THyA	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.46495
SRSF9	Pathway Commons Protein-Protein Interactions	1.0	null
SUZ12	ENCODE Transcription Factor Targets	1.0	null
NIF3L1	Pathway Commons Protein-Protein Interactions	1.0	null
Piriform area, pyramidal layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.07047
DUT	Pathway Commons Protein-Protein Interactions	1.0	null
MYO3A	Pathway Commons Protein-Protein Interactions	1.0	null
MOLM-13	Sanger Dependency Map Cancer Cell Line Proteomics	-1.0	-3.68676
INCB 3284	DeepCoverMOA Drug Mechanisms of Action	1.0	0.27
ATF3-23680149-GBM1-GSC-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Perturb_358_KD_SIRT5_SRP311327	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-12.4734
liver cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.454093
GSE153871_4_v_2_cytarabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
ETS2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.7066
Head and Neck squamous cell carcinoma_HNSC_TCGA-CR-7392-01A-11R-2016-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE142210_2_v_10_panobinostat_human	RummaGEO Drug Perturbation Signatures	-1.0	null
dorsomedial hypothalamic nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.947513
paracentral lobule, posterior part, left, lateral bank of gyrus	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.93285
GSE128076_1_v_0_doxycycline_human	RummaGEO Drug Perturbation Signatures	1.0	null
SW 1573	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.66601
GSE145639_1_v_6_adar_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Pancreatic adenocarcinoma_PAAD_TCGA-M8-A5N4-01A-11R-A26U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
superficial dorsofrontal area	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.07282
BL1100 (HIPK2)	NURSA Protein Complexes	1.0	null
Spironolactone	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.44
Primary somatosensory area, trunk, layer 5	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.01282
corneal	GeneRIF Biological Term Annotations	1.0	null
PDLIM5	Pathway Commons Protein-Protein Interactions	1.0	null
EP300_ECC-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HOXD12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.6265
FOS	ENCODE Transcription Factor Targets	1.0	null
KRT1	Pathway Commons Protein-Protein Interactions	1.0	null
Adult Glioblastoma	DisGeNET Gene-Disease Associations	1.0	null
UBE2L3	Pathway Commons Protein-Protein Interactions	1.0	null
Molindone	DeepCoverMOA Drug Mechanisms of Action	1.0	0.38
Actin filament	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
sublayer 6a of PCx	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.24435
STK11_knockout_278_GSE34866	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	-1.0	-1.06007
SUM 159PT	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.51219
NIP7	Pathway Commons Protein-Protein Interactions	1.0	null
SPB06189	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.53
DNAH3	Pathway Commons Protein-Protein Interactions	1.0	null
KP-2	Sanger Dependency Map Cancer Cell Line Proteomics	1.0	2.3276
Kidney renal papillary cell carcinoma_KIRP_TCGA-A4-A7UZ-01A-12R-A355-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC6499311-supp_gr.243345.118_Supplemental_Table_S8.xlsx-S8C_Het1A-HNF4A_2d_5x_closed-Gene_Name_HNF4A	Rummagene Transcription Factor Associations 2026	1.0	null
NCI-H2023	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.08554
DNM1	Pathway Commons Protein-Protein Interactions	1.0	null
CHSA8926	Sanger Dependency Map Cancer Cell Line Proteomics	1.0	2.31884
MYH11	Pathway Commons Protein-Protein Interactions	1.0	null
RPTN	Pathway Commons Protein-Protein Interactions	1.0	null
BIN1	Pathway Commons Protein-Protein Interactions	1.0	null
GSE121198,GSE129779_3_v_1_arid1a_human	RummaGEO Gene Perturbation Signatures	-1.0	null
USP10	NURSA Protein-Protein Interactions	1.0	0.168644
Posterior parietal association areas, layer 6a	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.34962
PWP1	Pathway Commons Protein-Protein Interactions	1.0	null
USP39	Pathway Commons Protein-Protein Interactions	1.0	null
hsa-miR-548f	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
Kidney Chromophobe_KICH_TCGA-KL-8323-01A-21R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GFAP	Pathway Commons Protein-Protein Interactions	1.0	null
MKN-45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.34811
BL4249 (PPP2R2B)	NURSA Protein Complexes	1.0	null
ACTB	NURSA Protein-Protein Interactions	1.0	0.15327
ATF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.2114
GSE122711_1_v_0_mpc1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
BCL2L2-PABPN1	Pathway Commons Protein-Protein Interactions	1.0	null
MYH1	Pathway Commons Protein-Protein Interactions	1.0	null
GSE210101,GSE210114_1_v_3_urod_human	RummaGEO Gene Perturbation Signatures	1.0	null
AZGP1	Pathway Commons Protein-Protein Interactions	1.0	null
THAP1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.5207
Primary somatosensory area, upper limb	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.26275
NR2F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	70.9066
oculomotor nuclear complex, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.971713
U2SURP	Pathway Commons Protein-Protein Interactions	1.0	null
BCLAF1	Pathway Commons Protein-Protein Interactions	1.0	null
GSE179036_1_v_0_trim24_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE121824,GSE121826_0_v_3_scaf8_human	RummaGEO Gene Perturbation Signatures	-1.0	null
PABPC4	Pathway Commons Protein-Protein Interactions	1.0	null
TAGLN2	Pathway Commons Protein-Protein Interactions	1.0	null
GSE186810,GSE186813_2_v_5_furin_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-CW-6087-01A-11R-1672-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
betaactin	GeneRIF Biological Term Annotations	1.0	null
GSE186810,GSE186813_2_v_0_furin_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
hsa-miR-4644	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
GSE205729,GSE205731_2_v_1_tazemetostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
laterodorsal subdivision of area 8	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.95726
PMC9464213-41467_2022_33063_MOESM11_ESM.xlsx-BNC2_replicate3_proteins-gene_name_BNC2	Rummagene Transcription Factor Associations 2026	1.0	null
RBM22	Pathway Commons Protein-Protein Interactions	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CX-7219-01A-11R-2016-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
digestive gland	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
FYCO1	Pathway Commons Protein-Protein Interactions	1.0	null
CEBPD-23245923-MEFS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
HK-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.684
RPS7	Pathway Commons Protein-Protein Interactions	1.0	null
smooth muscle	HPA Tissue Protein Expression Profiles	1.0	0.905838
Brain Lower Grade Glioma_LGG_TCGA-E1-5318-01A-01R-1470-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
magnocellular division of VA	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.29051
Rectum adenocarcinoma_READ_TCGA-DT-5265-01A-21R-1830-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hsa-miR-556-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
GSE128730_3_v_2_neratinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
HMGB1	Pathway Commons Protein-Protein Interactions	1.0	null
principal sensory nucleus of trigeminal nerve	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.907489
GSE184356_1_v_2_tfam_human	RummaGEO Gene Perturbation Signatures	1.0	null
Perturb_5535_KO_GOLGB1_ERP022243	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-20.0
FOSL1::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.4164
Spinal nucleus of the trigeminal, oral part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.31584
Frontal lobe	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.0
PMC7611259-EMS114661-supplement-Supplementary_Tables.xlsx-ST18-Unnamed_5_ST18	Rummagene Transcription Factor Associations 2026	1.0	null
EP300_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
skin	GTEx Tissue Gene Expression Profiles	1.0	1.33206
RBMXL2	Pathway Commons Protein-Protein Interactions	1.0	null
TUBB3	Pathway Commons Protein-Protein Interactions	1.0	null
FAM98A	Pathway Commons Protein-Protein Interactions	1.0	null
AHNAK	Pathway Commons Protein-Protein Interactions	1.0	null
EP300_ECC-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
gastrointestinal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.255946
Intestinal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.135
CCT6A	Pathway Commons Protein-Protein Interactions	1.0	null
FOSL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.0899
NCIH1915	DepMap CRISPR Gene Dependency	1.0	2.90929
Inferior colliculus, central nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	3.64251
JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.1254
hsa-miR-548q	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.13535
Hepatocellular carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.44
Primary somatosensory area, trunk, layer 4	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.80762
GATA2-21571218-MEGAKARYOCYTES-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
Genistein	CTD Gene-Chemical Interactions	1.0	null
MZ in ventromedial extrastriate cortex (VP)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.43397
Brain Lower Grade Glioma_LGG_TCGA-DB-5279-01A-03R-2347-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CPSF1	Pathway Commons Protein-Protein Interactions	1.0	null
KRT31	Pathway Commons Protein-Protein Interactions	1.0	null
C84	DepMap CRISPR Gene Dependency	1.0	2.30032
TEAD4_ECC-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Supramolecular complex	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
superficial stratum of PCPD	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.0725
Primary somatosensory area, trunk, layer 2/3	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.5732
NCI-H2009	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Mutation Profiles	1.0	null
CPA1	Pathway Commons Protein-Protein Interactions	1.0	null
HEC1A	CCLE Cell Line Gene CNV Profiles	-1.0	-1.46778
BL2151 (TPR)	NURSA Protein Complexes	1.0	null
ANK2	Pathway Commons Protein-Protein Interactions	1.0	null
Isoproterenol	DeepCoverMOA Drug Mechanisms of Action	1.0	0.51
HCC4011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.45426
C18orf32	Pathway Commons Protein-Protein Interactions	1.0	null
Primary somatosensory area, barrel field, layer 5	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.04675
ATF3	ChEA Transcription Factor Targets	1.0	null
liminal alar domain of m1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.56861
CENPJ	Pathway Commons Protein-Protein Interactions	1.0	null
hsa-miR-1911	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
VCAP	DepMap CRISPR Gene Dependency	1.0	5.81522
FOS::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.0977
extracellular membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
IRF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.0437
ARPC1A	Pathway Commons Protein-Protein Interactions	1.0	null
APOBEC3B	Pathway Commons Protein-Protein Interactions	1.0	null
Primary somatosensory area, mouth, layer 2/3	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.27626
RBPJ-21746931-IB4-LCL-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
snoutepidermis	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	1.46784
EGFR	Pathway Commons Protein-Protein Interactions	1.0	null
Cilostamide	DeepCoverMOA Drug Mechanisms of Action	1.0	0.25
PMC8481886-Table_2.xlsx-A_subsets-AF_MSC_HSC_MSC	Rummagene Transcription Factor Associations 2026	1.0	null
Sperm head-tail coupling apparatus	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.635
GSE184892_4_v_2_trehalose_human	RummaGEO Drug Perturbation Signatures	1.0	null
LP1	DepMap CRISPR Gene Dependency	1.0	2.12426
outer SZ in dorsomedial parietal cortex (area 7m)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.862
ARF6	Pathway Commons Protein-Protein Interactions	1.0	null
SNRNP27	Pathway Commons Protein-Protein Interactions	1.0	null
KM03430	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.62
NURR1	MotifMap Predicted Transcription Factor Targets	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-77-8144-01A-11R-2247-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RPL30	Pathway Commons Protein-Protein Interactions	1.0	null
EZH2_fibroblast of lung_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GSE163282_12_v_2_aspirin_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE195503_1_v_0_progesterone_human	RummaGEO Drug Perturbation Signatures	-1.0	null
RBM3	Pathway Commons Protein-Protein Interactions	1.0	null
BL2502 (REST)	NURSA Protein Complexes	1.0	null
Rheumatoid Arthritis	DisGeNET Gene-Disease Associations	1.0	null
D423MG	DepMap CRISPR Gene Dependency	1.0	4.70613
RHOG	Pathway Commons Protein-Protein Interactions	1.0	null
LMO2-26923725-CHIP-SEQ-HEMANGIOBLAST-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
hMPV_48Hour_18234263_GSE8961	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.32626
Alzheimer Disease	DisGeNET Gene-Disease Associations	1.0	null
NR3C1_ECC-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
STK3	Pathway Commons Protein-Protein Interactions	1.0	null
SNU-81	COSMIC Cell Line Gene Mutation Profiles	1.0	null
NKX2-5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.4157
TTBK2	Pathway Commons Protein-Protein Interactions	1.0	null
TK1	Pathway Commons Protein-Protein Interactions	1.0	null
mantle zone of PHyB-D	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.03894
Nonorganic Psychosis	DisGeNET Gene-Disease Associations	1.0	null
CAL-51	Sanger Dependency Map Cancer Cell Line Proteomics	1.0	1.88384
Posterior parietal association areas	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.12832
Diabetes Mellitus	DisGeNET Gene-Disease Associations	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-K7-AAU7-01A-11R-A38B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
kinase binding	GO Molecular Function Annotations 2023	1.0	null
KIF26A	Pathway Commons Protein-Protein Interactions	1.0	null
Hmx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.362
RCC1	Pathway Commons Protein-Protein Interactions	1.0	null
Entorhinal area, lateral part, layer 5	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.35553
496100536_HIP_no dementia_no TBI_87_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.00024
BL7986 (ABCD3)	NURSA Protein Complexes	1.0	null
RPS4Y1	Pathway Commons Protein-Protein Interactions	1.0	null
GSE235587_2_v_0_mitoxantrone_human	RummaGEO Drug Perturbation Signatures	1.0	null
496100418_TCx_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.73828
PMC10070455-41598_2023_32568_MOESM3_ESM.xlsx-Genes_AA-genes_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
CKAP4	Pathway Commons Protein-Protein Interactions	1.0	null
Lung adenocarcinoma_LUAD_TCGA-78-8655-01A-11R-2403-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
adenocarcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053327
HIST1H2AD	Pathway Commons Protein-Protein Interactions	1.0	null
epithelioma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052124
Hypertrophic cardiomyopathy	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.969897
THOC6	Pathway Commons Protein-Protein Interactions	1.0	null
POLR2AphosphoS5_G1E_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
pituitary	GTEx Tissue Gene Expression Profiles	-1.0	-0.878086
GSE121198,GSE129779_3_v_2_arid1a_human	RummaGEO Gene Perturbation Signatures	-1.0	null
central medullary reticular group, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.9331
HNRNPA2B1	Pathway Commons Protein-Protein Interactions	1.0	null
ARHGEF10	NURSA Protein-Protein Interactions	1.0	1.06443
Primary somatosensory area, upper limb, layer 4	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.57793
MYC_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
plant primordium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.248845
actin	GeneRIF Biological Term Annotations	1.0	null
GSE242333_0_v_2_sorafenib_human	RummaGEO Drug Perturbation Signatures	1.0	null
Depression	DisGeNET Gene-Disease Associations	1.0	null
rostral subdivision of paraventricular nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.09001
transmembrane transporter complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.083062
A-427	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.05785
CPSF7	Pathway Commons Protein-Protein Interactions	1.0	null
GSE210101,GSE210114_4_v_3_urod_human	RummaGEO Gene Perturbation Signatures	1.0	null
cuneus, left, striate	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.06453
NB120-3333 (PSME3)	NURSA Protein Complexes	1.0	null
gallbladder	HPA Tissue Protein Expression Profiles	1.0	0.905838
FOSL2::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.5194
Spermatic Cord Torsion	DisGeNET Gene-Disease Associations	1.0	null
LRP1B	Pathway Commons Protein-Protein Interactions	1.0	null
EZH2_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
JHH-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.27873
SLC3A2	Pathway Commons Protein-Protein Interactions	1.0	null
BL4516 (ATRX)	NURSA Protein Complexes	1.0	null
786-O	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.3766
Brain Lower Grade Glioma_LGG_TCGA-HT-8011-01A-11R-2403-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GIT2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.20674
hsa-miR-381	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
BT20	CCLE Cell Line Gene CNV Profiles	-1.0	-1.89955
Bed nuclei of the stria terminalis, posterior division, transverse nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.24826
H4 histone acetyltransferase complex	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
cuneiform nucleus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.67658
RPS20	Pathway Commons Protein-Protein Interactions	1.0	null
Cataract 48	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.725
Epithelioma cell	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
SFN	Pathway Commons Protein-Protein Interactions	1.0	null
496100319_HIP_no dementia_TBI_81_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.54961
GSE153871_0_v_3_cytarabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
hsa-miR-4683	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
NFE2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.3472
subgranular zone of rostral dentate gyrus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.53131
PMC5195898-NIHMS825571-supplement-3.xlsx-Sheet1-H1975_M1_vs_H1975_M1_CIC_reconstitution_Differential_gene_expression_CIC	Rummagene Transcription Factor Associations 2026	1.0	null
SCAR complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.785
GSE224599_0_v_1_tfcp2_human	RummaGEO Gene Perturbation Signatures	1.0	null
TIAL1	Pathway Commons Protein-Protein Interactions	1.0	null
CEBPB_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
IKZF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.6567
ATR	Pathway Commons Protein-Protein Interactions	1.0	null
TBC1D15	Pathway Commons Protein-Protein Interactions	1.0	null
epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05206
axon development	GO Biological Process Annotations 2025	1.0	null
MYCBP2	Pathway Commons Protein-Protein Interactions	1.0	null
hsa-miR-4311	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
Primary motor area, Layer 6b	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.33816
OLA1	Pathway Commons Protein-Protein Interactions	1.0	null
PHGDH	Pathway Commons Protein-Protein Interactions	1.0	null
MAP3K1	Pathway Commons Protein-Protein Interactions	1.0	null
NCI-SNU-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Trachomatis	DisGeNET Gene-Disease Associations	1.0	null
MYO1C	Pathway Commons Protein-Protein Interactions	1.0	null
RPL27A	Pathway Commons Protein-Protein Interactions	1.0	null
organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
Idiopathic Pulmonary Arterial Hypertension	DisGeNET Gene-Disease Associations	1.0	null
PMC9464213-41467_2022_33063_MOESM11_ESM.xlsx-BNC2_replicate3_peptides-gene_name_BNC2	Rummagene Transcription Factor Associations 2026	1.0	null
SAR1A	Pathway Commons Protein-Protein Interactions	1.0	null
H-EMC-SS	Sanger Dependency Map Cancer Cell Line Proteomics	-1.0	-2.53374
DGKH	Pathway Commons Protein-Protein Interactions	1.0	null
hsa-miR-4766-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
Mianserin	DeepCoverMOA Drug Mechanisms of Action	1.0	0.28
RXRB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	69.4597
PMC4595011-pgen.1005555.s001.xlsx-BPTF_UP-regulated-Gene_name_BPTF	Rummagene Transcription Factor Associations 2026	1.0	null
Null cell	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.15
cell part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
RPS25	Pathway Commons Protein-Protein Interactions	1.0	null
MRPS17	Pathway Commons Protein-Protein Interactions	1.0	null
PMC12234789-41467_2025_61560_MOESM3_ESM.xlsx-Supplementary_data_1-Only_YY1_IP-MS_YY1	Rummagene Transcription Factor Associations 2026	1.0	null
PMC7397849-supp_gad.338681.120_Supplemental_Table_S3.xlsx-S3N_Peaks_YAP1FAM118B_TEAD4-Unnamed_14_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
dorsal entopeduncular nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.3719
salivarygland	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	1.07371
RCAN3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.95717
SJSA-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
MDA-MB-157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07904
NME1	Pathway Commons Protein-Protein Interactions	1.0	null
CAND1	Pathway Commons Protein-Protein Interactions	1.0	null
GATA2-19941826-K562-human	ChEA Transcription Factor Binding Site Profiles	1.0	null
AP2B1	Pathway Commons Protein-Protein Interactions	1.0	null
PMC8202205-NIHMS1706275-supplement-Table_S1.xlsx-Def_End_D4_GATA6-dependent-ENSEMBL_GATA6	Rummagene Transcription Factor Associations 2026	1.0	null
SMC3_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HSPA1L	Pathway Commons Protein-Protein Interactions	1.0	null
GSE125862_2_v_0_dexamethasone_human	RummaGEO Drug Perturbation Signatures	-1.0	null
PMC12260418-pnas.2425984122.sd02.xlsx-TEAD1_6fraction_test_result-Unnamed_3_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
cell projection part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.046052
PMC4595011-pgen.1005555.s001.xlsx-BPTF_UP-regulated-Ensembl_gene_id_BPTF	Rummagene Transcription Factor Associations 2026	1.0	null
JVM-3	Sanger Dependency Map Cancer Cell Line Proteomics	1.0	1.79814
medial geniculate nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.15123
SNRPE	Pathway Commons Protein-Protein Interactions	1.0	null
PSMG1	Pathway Commons Protein-Protein Interactions	1.0	null
GSE111061_1_v_0_tofacitinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
FAU	Pathway Commons Protein-Protein Interactions	1.0	null
MASP1	Pathway Commons Protein-Protein Interactions	1.0	null
root primordium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.70843
BL2776 (NF2)	NURSA Protein Complexes	1.0	null
Sarcoma_SARC_TCGA-DX-AB2Z-01A-11R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC6855629-pone.0225186.s009.xlsx-Sheet1-DEGs_downregulated_in_HEK293_MEIS1_KO_MEIS1	Rummagene Transcription Factor Associations 2026	1.0	null
Perturb_14511_KD_TP63_ERP109983	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	16.6621
Lung adenocarcinoma_LUAD_TCGA-55-7726-01A-11R-2170-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Tropicamide	DeepCoverMOA Drug Mechanisms of Action	1.0	5.85
mantle zone of m1Lim	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.56415
Pheochromocytoma and Paraganglioma_PCPG_TCGA-WB-A822-01A-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Schizophrenia	DisGeNET Gene-Disease Associations	1.0	null
GSE221327_5_v_0_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
SERBP1	Pathway Commons Protein-Protein Interactions	1.0	null
COPB1	Pathway Commons Protein-Protein Interactions	1.0	null
CUL4B	Pathway Commons Protein-Protein Interactions	1.0	null
CKAP5	Pathway Commons Protein-Protein Interactions	1.0	null
LCAM1	DepMap CRISPR Gene Dependency	1.0	7.39329
CEBPD-21427703-3T3-L1-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
PDCD5	Pathway Commons Protein-Protein Interactions	1.0	null
PSMD13	Pathway Commons Protein-Protein Interactions	1.0	null
Acute Myeloid Leukemia_LAML_TCGA-AB-2911-03A-01T-0734-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Sox5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.879
HUPT4	DepMap CRISPR Gene Dependency	1.0	5.68425
496100377_PCx_no dementia_no TBI_95-99_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.70643
GSE142210_4_v_7_panobinostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
ZNF326	Pathway Commons Protein-Protein Interactions	1.0	null
PMC12260418-pnas.2425984122.sd01.xlsx-TEAD4_6fraction_test_result-Unnamed_3_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
Lateral hypothalamic area	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.15872
EIF5	Pathway Commons Protein-Protein Interactions	1.0	null
TP63_01_326	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	0.78433
RBM12	Pathway Commons Protein-Protein Interactions	1.0	null
interstitial nucleus of Cajal, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	2.3408
Bladder Urothelial Carcinoma_BLCA_TCGA-G2-A2EF-01A-12R-A18C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
TFRC	Pathway Commons Protein-Protein Interactions	1.0	null
HNF4A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.004
GPC4	Pathway Commons Protein-Protein Interactions	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-ZF-AA4N-01A-11R-A38B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
P53-21459846-SAOS-2-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
GATA4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.258
HIST1H1A	Pathway Commons Protein-Protein Interactions	1.0	null
ATG3	Pathway Commons Protein-Protein Interactions	1.0	null
BL3571 (PPP6C)	NURSA Protein Complexes	1.0	null
GSPT2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.22108
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-C5-A2LV-01A-11R-A18M-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE140965_2_v_4_mybpc3_human	RummaGEO Gene Perturbation Signatures	1.0	null
UMUC3_URINARY_TRACT	CCLE Cell Line Proteomics	1.0	5.91906
GSE228619_0_v_1_cdh11_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE163282_12_v_10_aspirin_human	RummaGEO Drug Perturbation Signatures	1.0	null
NBTGR	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.34
CLNS1A	Pathway Commons Protein-Protein Interactions	1.0	null
L-741	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.89
Secondary Malignant Neoplasm Of Colon And/Or Rectum	DisGeNET Gene-Disease Associations	1.0	null
POLR2A_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Prefoldin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.842
hsa-miR-3667-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
superior colliculus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	2.09382
GSE210101,GSE210114_5_v_10_urod_human	RummaGEO Gene Perturbation Signatures	1.0	null
Malignant Neoplasm	DisGeNET Gene-Disease Associations	1.0	null
BNC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.4103
MCCC2	Pathway Commons Protein-Protein Interactions	1.0	null
BL406 (RFC3)	NURSA Protein Complexes	1.0	null
nt2d1	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.558
VIM	Pathway Commons Protein-Protein Interactions	1.0	null
TRAP1	Pathway Commons Protein-Protein Interactions	1.0	null
ZSCAN16	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.5117
r2 part of trigeminal transition zone	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.30522
SC-834 ()	NURSA Protein Complexes	1.0	null
L-428	Sanger Dependency Map Cancer Cell Line Proteomics	1.0	3.12724
CDK4	Pathway Commons Protein-Protein Interactions	1.0	null
PCBD1	Pathway Commons Protein-Protein Interactions	1.0	null
PMC9996951-40659_2023_417_MOESM3_ESM.xlsx-Osteo_vs_MSC_Array2_hypo_er_txt-Upstream_NAME_MSC	Rummagene Transcription Factor Associations 2026	1.0	null
purine ribonucleoside triphosphate binding	GO Molecular Function Annotations 2015	1.0	null
FLNA	Pathway Commons Protein-Protein Interactions	1.0	null
NCI-H1869	COSMIC Cell Line Gene CNV Profiles	1.0	2.93899
POLR1C	Pathway Commons Protein-Protein Interactions	1.0	null
EEF1A2	Pathway Commons Protein-Protein Interactions	1.0	null
Hypertrophy	CTD Gene-Disease Associations	1.0	1.26794
STK38	Pathway Commons Protein-Protein Interactions	1.0	null
P005091	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.61
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-7235-11A-01R-2016-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-6433-01A-11R-1686-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE230283_1_v_0_birc2_human	RummaGEO Gene Perturbation Signatures	1.0	null
r11 alar plate	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.53317
cortico-medial group, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.986849
stabilizing	GeneRIF Biological Term Annotations	1.0	null
LGALS1	Pathway Commons Protein-Protein Interactions	1.0	null
Ventral medial nucleus of the thalamus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.03619
AU565	COSMIC Cell Line Gene Mutation Profiles	1.0	null
rostral ventrolateral reticular area	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.60213
lower dorsal perifornical nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.54472
RBBP5_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
whole plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.079958
PMC9464213-41467_2022_33063_MOESM11_ESM.xlsx-BNC2_replicate2_peptides-gene_name_BNC2	Rummagene Transcription Factor Associations 2026	1.0	null
HOXA7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.4103
Nafamostat	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.61
Spinal nucleus of the trigeminal, oral part, rostral dorsomedial part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.23235
RPL12	Pathway Commons Protein-Protein Interactions	1.0	null
PMC6973177-Table_2.XLSX-LPS_interindividual_differences-Unnamed_5_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
VAPA	Pathway Commons Protein-Protein Interactions	1.0	null
colliculus superior	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.5291
SNUC5	DepMap CRISPR Gene Dependency	1.0	2.86483
CORO1C	Pathway Commons Protein-Protein Interactions	1.0	null
RBBP4	Pathway Commons Protein-Protein Interactions	1.0	null
Actinonin	DeepCoverMOA Drug Mechanisms of Action	1.0	0.41
ITGA4	Pathway Commons Protein-Protein Interactions	1.0	null
Inferior colliculus, dorsal nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.73708
EEF1D	Pathway Commons Protein-Protein Interactions	1.0	null
RPF2	Pathway Commons Protein-Protein Interactions	1.0	null
RPL18	Pathway Commons Protein-Protein Interactions	1.0	null
YWHAE	Pathway Commons Protein-Protein Interactions	1.0	null
POLR1E	Pathway Commons Protein-Protein Interactions	1.0	null
RANBP9	Pathway Commons Protein-Protein Interactions	1.0	null
Pancreatic adenocarcinoma_PAAD_TCGA-IB-8126-01A-11R-2404-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-ZF-AA4W-01A-12R-A38B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
KRT85	Pathway Commons Protein-Protein Interactions	1.0	null
BL1163 (SNIP1)	NURSA Protein Complexes	1.0	null
mammillary body, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.46604
IWR-1	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.58
Prdm5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	33.1838
GSE202434,GSE202438_2_v_5_talazoparib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
estradiol_homo sapiens_gpl570_gse23610	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051336
Lateral terminal nucleus of the accessory optic tract	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.02343
EPB41	Pathway Commons Protein-Protein Interactions	1.0	null
pineal body	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.55919
PBX3	ENCODE Transcription Factor Targets	1.0	null
ITGA5	Pathway Commons Protein-Protein Interactions	1.0	null
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-IR-A3LB-01A-11R-A24H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE221327_5_v_9_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
DSG1	Pathway Commons Protein-Protein Interactions	1.0	null
CELF2	Pathway Commons Protein-Protein Interactions	1.0	null
GSE230744,GSE237803_0_v_2_hira_human	RummaGEO Gene Perturbation Signatures	1.0	null
PACS1	Pathway Commons Protein-Protein Interactions	1.0	null
Mecom	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	30.4815
Perturb_7604_KD_PARP1_SRP410217	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	20.0
GSE221327_8_v_11_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
Cardiac Arrhythmia	DisGeNET Gene-Phenotype Associations	1.0	null
BL1921 (KIAA1967)	NURSA Protein Complexes	1.0	null
SNU489	CCLE Cell Line Gene CNV Profiles	1.0	1.40113
DDX17	Pathway Commons Protein-Protein Interactions	1.0	null
EIF3I	Pathway Commons Protein-Protein Interactions	1.0	null
MYBBP1A	Pathway Commons Protein-Protein Interactions	1.0	null
PXK	Pathway Commons Protein-Protein Interactions	1.0	null
MYH14	Pathway Commons Protein-Protein Interactions	1.0	null
Dinoprost	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.26
FLG2	Pathway Commons Protein-Protein Interactions	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-DD-A4NA-01A-11R-A266-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NHP2L1	Pathway Commons Protein-Protein Interactions	1.0	null
GLRX3	Pathway Commons Protein-Protein Interactions	1.0	null
PPP2R1A	Pathway Commons Protein-Protein Interactions	1.0	null
BL3314 (RNF40)	NURSA Protein Complexes	1.0	null
SF3B3	Pathway Commons Protein-Protein Interactions	1.0	null
PMC9160255-41467_2022_30710_MOESM4_ESM.xlsx-AR_specific_regulated_genes-ENSEMBL_AR	Rummagene Transcription Factor Associations 2026	1.0	null
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.880743
SLK	Pathway Commons Protein-Protein Interactions	1.0	null
Crus 2	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.12611
SK-MM-2	Sanger Dependency Map Cancer Cell Line Proteomics	-1.0	-2.23
MRPS34	Pathway Commons Protein-Protein Interactions	1.0	null
Acute Myeloid Leukemia_LAML_TCGA-AB-2823-03A-01T-0736-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
liver cancer cell	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Endocrine system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.114
CREM	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.0136
GSE238018_1_v_0_mxra8_human	RummaGEO Gene Perturbation Signatures	1.0	null
heterocyclic compound binding	GO Molecular Function Annotations 2015	1.0	null
SEC22B	Pathway Commons Protein-Protein Interactions	1.0	null
H3K4me1_A549_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
KRT33B	Pathway Commons Protein-Protein Interactions	1.0	null
TUBB4A	Pathway Commons Protein-Protein Interactions	1.0	null
RPL35A	Pathway Commons Protein-Protein Interactions	1.0	null
SMC3	ENCODE Transcription Factor Targets	1.0	null
RGS3	Pathway Commons Protein-Protein Interactions	1.0	null
mantle zone of r10BL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.13291
SND1	Pathway Commons Protein-Protein Interactions	1.0	null
ALDOA	Pathway Commons Protein-Protein Interactions	1.0	null
BT16	DepMap CRISPR Gene Dependency	1.0	3.54145
1,4-DHNA	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.4
HUPT4_PANCREAS	CCLE Cell Line Proteomics	1.0	3.34809
ANP32B	Pathway Commons Protein-Protein Interactions	1.0	null
DY 131	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.37
CAP1	Pathway Commons Protein-Protein Interactions	1.0	null
Spinal nucleus of the trigeminal, oral part, caudal dorsomedial part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.29045
ARPC4	Pathway Commons Protein-Protein Interactions	1.0	null
PDCD10	Pathway Commons Protein-Protein Interactions	1.0	null
cytochrome complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.129824
DOV13	Sanger Dependency Map Cancer Cell Line Proteomics	1.0	1.87733
FOSB::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.3506
Arid3a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	25.3704
PAK2	Pathway Commons Protein-Protein Interactions	1.0	null
TEAD4	ENCODE Transcription Factor Targets	1.0	null
PABPC3	Pathway Commons Protein-Protein Interactions	1.0	null
vesicle	GO Cellular Component Annotations 2015	1.0	null
BL2294 (EDC4)	NURSA Protein Complexes	1.0	null
PRPF39	Pathway Commons Protein-Protein Interactions	1.0	null
ATP5O	Pathway Commons Protein-Protein Interactions	1.0	null
GSE139016_0_v_1_disulfiram_human	RummaGEO Drug Perturbation Signatures	-1.0	null
SNRPG	Pathway Commons Protein-Protein Interactions	1.0	null
IGF2BP3	Pathway Commons Protein-Protein Interactions	1.0	null
Axon	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
VIIIA, left, lateral hemisphere	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.42402
GNB3	Pathway Commons Protein-Protein Interactions	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-5706-01A-11R-1541-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC7789679-13287_2020_2062_MOESM3_ESM.docx-0-Supplementary_Table_1_MSC_secretome_following_healthy_CM_stimulation_MSC	Rummagene Transcription Factor Associations 2026	1.0	null
EGFR_druginhibition_82_GSE27638	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	-1.0	-2.37458
Multiple Sclerosis	DisGeNET Gene-Disease Associations	1.0	null
PMC7773934-Table_1.XLSX-Table_S2-Supplementary_Table_2_TBX22_co-expressed_genes_detailed_results_TBX22	Rummagene Transcription Factor Associations 2026	1.0	null
PMC8104016-hcg-12-e002353-s006.xlsx-mTHP-1-LPS_Prom-Prom_Prom-GWAS-RefSeq_Name_1_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
SC-126 (TP53)	NURSA Protein Complexes	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-FS-A1Z4-06A-11R-A18T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Pancreatic adenocarcinoma_PAAD_TCGA-HZ-A49I-01A-12R-A26U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SRSF2	Pathway Commons Protein-Protein Interactions	1.0	null
CDX2-22108803-LS180-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
MYC_MCF-7_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EBNA2-21746931-IB4-LCL-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
PIK3R2	Pathway Commons Protein-Protein Interactions	1.0	null
TCF12	ENCODE Transcription Factor Targets	1.0	null
BL8231 (TOP3A)	NURSA Protein Complexes	1.0	null
hsa-miR-185	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
Sumatriptan	DeepCoverMOA Drug Mechanisms of Action	1.0	0.33
GSE235066_4_v_0_cisplatin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
BL1734 (TBL1XR1)	NURSA Protein Complexes	1.0	null
GSE221327_4_v_11_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE221327_10_v_0_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
MDA-MB-415	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01177
Prostate adenocarcinoma_PRAD_TCGA-G9-6365-01A-11R-1789-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
DDX1	Pathway Commons Protein-Protein Interactions	1.0	null
hsa-miR-4728-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.13535
BL7656 (C2orf3)	NURSA Protein Complexes	1.0	null
TCP1	Pathway Commons Protein-Protein Interactions	1.0	null
non-membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.045469
HIST1H2BJ	Pathway Commons Protein-Protein Interactions	1.0	null
PMC5869742__F5	PFOCR Pathway Figure Associations 2024	1.0	null
SW1088	CCLE Cell Line Gene CNV Profiles	1.0	1.63275
LRP4	Pathway Commons Protein-Protein Interactions	1.0	null
LTV1	Pathway Commons Protein-Protein Interactions	1.0	null
VZ in subcallosal region	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.15688
MOV10	Pathway Commons Protein-Protein Interactions	1.0	null
Cortical amygdalar area, anterior part, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.45372
hsa-miR-4638-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
Endocrine gland cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.401
CHD2	ENCODE Transcription Factor Targets	1.0	null
mantle zone of PSPa	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.42219
VZ in hypothalamic portion	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.86628
PPP3CB	Pathway Commons Protein-Protein Interactions	1.0	null
TRPV4	Pathway Commons Protein-Protein Interactions	1.0	null
Dronedarone	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.57
Vicriviroc	DeepCoverMOA Drug Mechanisms of Action	1.0	0.5
SHC1	Pathway Commons Protein-Protein Interactions	1.0	null
SN12C	COSMIC Cell Line Gene Mutation Profiles	1.0	null
hsa-miR-4301	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.13535
RCN2	Pathway Commons Protein-Protein Interactions	1.0	null
superficial layers of caudal presubiculum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	2.04891
H1FX	Pathway Commons Protein-Protein Interactions	1.0	null
FOXC1	JASPAR Predicted Transcription Factor Targets	1.0	null
KPNA2	Pathway Commons Protein-Protein Interactions	1.0	null
cytoskeleton	GO Cellular Component Annotations 2025	1.0	null
GART	Pathway Commons Protein-Protein Interactions	1.0	null
SNB75	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GSE86021_1_v_3_crenolanib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
TMPO	Pathway Commons Protein-Protein Interactions	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-HC-7737-01A-11R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CP in caudal subicular cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.859831
MAP1A	Pathway Commons Protein-Protein Interactions	1.0	null
CSN2	Pathway Commons Protein-Protein Interactions	1.0	null
TAL1-26923725-CHIP-SEQ-HEMANGIOBLAST-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
PEF1	Pathway Commons Protein-Protein Interactions	1.0	null
GSE195568_3_v_10_palbociclib_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSN	Pathway Commons Protein-Protein Interactions	1.0	null
PMC4450212__F4	PFOCR Pathway Figure Associations 2024	1.0	null
MESSA	CCLE Cell Line Gene CNV Profiles	-1.0	-1.43796
AAK1	Pathway Commons Protein-Protein Interactions	1.0	null
MPP2	Pathway Commons Protein-Protein Interactions	1.0	null
fulvestrant_homo sapiens_gpl570_gse22533	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
MCM7	Pathway Commons Protein-Protein Interactions	1.0	null
neuron projection	GO Cellular Component Annotations 2025	1.0	null
epididymis	HPA Tissue Protein Expression Profiles	1.0	0.905838
CREB3L1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.67
Nucleus ambiguus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.36388
dentate nucleus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.15829
medial mammillary nucleus, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.840364
dorsal cochlear nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.05547
BASP1	Pathway Commons Protein-Protein Interactions	1.0	null
Anxiety Disorders	CTD Gene-Disease Associations	1.0	1.48325
GAPDH	Pathway Commons Protein-Protein Interactions	1.0	null
GSE167956_1_v_0_trim28_human	RummaGEO Gene Perturbation Signatures	-1.0	null
RAB1A	Pathway Commons Protein-Protein Interactions	1.0	null
GLO1	Pathway Commons Protein-Protein Interactions	1.0	null
Postsynaptic cytoskeleton	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.503
ARID3A	JASPAR Predicted Transcription Factor Targets	1.0	null
Developmental and epileptic encephalopathy 76	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.411
Lobule III	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.16984
GSE239688_4_v_0_canagliflozin_human	RummaGEO Drug Perturbation Signatures	1.0	null
USP24	Pathway Commons Protein-Protein Interactions	1.0	null
AM38	DepMap CRISPR Gene Dependency	1.0	2.7723
H3K4me1_fibroblast of dermis_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
POLR2A_MCF 10A_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ACAT1	Pathway Commons Protein-Protein Interactions	1.0	null
Sarcoma_SARC_TCGA-QQ-A5VC-01A-31R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
A4-FUK	COSMIC Cell Line Gene Mutation Profiles	1.0	null
extracellular region part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
FOS	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	73.3332
Uterine cancer cell	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
superficial stratum of POH	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.2975
Thoracic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.155
RPS26	Pathway Commons Protein-Protein Interactions	1.0	null
HS729	CCLE Cell Line Gene CNV Profiles	1.0	1.77975
Liver cancer stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.565
TECR	Pathway Commons Protein-Protein Interactions	1.0	null
GBAS	Pathway Commons Protein-Protein Interactions	1.0	null
BL2217 (HPS3)	NURSA Protein Complexes	1.0	null
hsa-miR-4760-3p	TargetScan Predicted Conserved microRNA Targets	1.0	0.766596
Head and Neck squamous cell carcinoma_HNSC_TCGA-MT-A51X-01A-11R-A266-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE202933_1_v_0_ugt2b28_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Nasal Polyps	DisGeNET Gene-Disease Associations	1.0	null
PAK6	Pathway Commons Protein-Protein Interactions	1.0	null
FOSL2::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.5512
BL2270 (TCF12)	NURSA Protein Complexes	1.0	null
Tumor Cell Invasion	DisGeNET Gene-Phenotype Associations	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-KK-A8I5-01A-11R-A36G-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ATP6V1G2	Pathway Commons Protein-Protein Interactions	1.0	null
WM-9 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.776
anterodorsal nucleus of thalamus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.17553
Adenocarcinoma cell	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
CAPZA2	Pathway Commons Protein-Protein Interactions	1.0	null
TBC1D2B	Pathway Commons Protein-Protein Interactions	1.0	null
RAB7A	Pathway Commons Protein-Protein Interactions	1.0	null
HAT1	Pathway Commons Protein-Protein Interactions	1.0	null
BL6322 (SFN)	NURSA Protein Complexes	1.0	null
NuA4 histone acetyltransferase complex	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
interpeduncular nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.893589
SLC25A3	Pathway Commons Protein-Protein Interactions	1.0	null
REST-19997604-NEURONS-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
APLP1	Pathway Commons Protein-Protein Interactions	1.0	null
Gestational Trophoblastic Disease	DisGeNET Gene-Disease Associations	1.0	null
COV318	CCLE Cell Line Gene CNV Profiles	-1.0	-1.37008
KPNB1	Pathway Commons Protein-Protein Interactions	1.0	null
RPL36	Pathway Commons Protein-Protein Interactions	1.0	null
lateral TG part of the periaqueductal gray	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.23945
Nucleus y	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.01495
CBC2032 (ZMYND8)	NURSA Protein Complexes	1.0	null
IGHG2	Pathway Commons Protein-Protein Interactions	1.0	null
ARRB1	Hub Proteins Protein-Protein Interactions	1.0	null
Dementia Due To Alzheimer'S Disease (Disorder)	DisGeNET Gene-Disease Associations	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CN-6018-01A-11R-1686-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
KHDRBS1	Pathway Commons Protein-Protein Interactions	1.0	null
Perturb_12317_KD_HNRNPM_SRP136770	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	3.93763
PPP2CB	Pathway Commons Protein-Protein Interactions	1.0	null
DNAJC10	Pathway Commons Protein-Protein Interactions	1.0	null
P4HB	Pathway Commons Protein-Protein Interactions	1.0	null
AR	ChEA Transcription Factor Targets	1.0	null
RPS11	Pathway Commons Protein-Protein Interactions	1.0	null
RPL6	Pathway Commons Protein-Protein Interactions	1.0	null
Senile Plaques	DisGeNET Gene-Disease Associations	1.0	null
protein kinase binding	GO Molecular Function Annotations 2023	1.0	null
Implantation fossa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.819
liver carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.475255
Primary visual area, layer 2/3	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.57227
HSPH1	Pathway Commons Protein-Protein Interactions	1.0	null
Perturb_7219_KD_RNF2_SRP321650	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	20.0
cytoplasm	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
RS 67333	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.42
DBN1	Pathway Commons Protein-Protein Interactions	1.0	null
CW-2	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-HQ-A5NE-01A-12R-A28M-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CBX3	Pathway Commons Protein-Protein Interactions	1.0	null
Ibutamoren	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.85
DNAJA1	Pathway Commons Protein-Protein Interactions	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-K4-A5RH-01A-11R-A30C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE142210_9_v_6_panobinostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
H4/H2A histone acetyltransferase complex	GO Cellular Component Annotations 2025	1.0	null
TSR1	Pathway Commons Protein-Protein Interactions	1.0	null
colo829	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.266
Liver Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
outer SZ in superolateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.30255
ATG4A	Pathway Commons Protein-Protein Interactions	1.0	null
SMI-16a	DeepCoverMOA Drug Mechanisms of Action	1.0	0.65
Brain Lower Grade Glioma_LGG_TCGA-DU-A76L-01A-11R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SNB75	Sanger Dependency Map Cancer Cell Line Proteomics	1.0	2.11302
MRPL13	Pathway Commons Protein-Protein Interactions	1.0	null
HIST1H2BF	Pathway Commons Protein-Protein Interactions	1.0	null
SSBP1	Pathway Commons Protein-Protein Interactions	1.0	null
PMC10335677-pbio.3002161.s009.xls-MLL_siRNA_DEGs-Ensembl_Symbol_KMT2A	Rummagene Transcription Factor Associations 2026	1.0	null
septal organ	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	1.23083
496100349_HIP_no dementia_no TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	6.66266
U138MG	CCLE Cell Line Gene CNV Profiles	-1.0	-1.73057
DAP3	Pathway Commons Protein-Protein Interactions	1.0	null
GSE210101,GSE210114_11_v_3_urod_human	RummaGEO Gene Perturbation Signatures	-1.0	null
MACF1	Pathway Commons Protein-Protein Interactions	1.0	null
NCIH1993	DepMap CRISPR Gene Dependency	1.0	5.24718
SK-MEL-30 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.519
L-363	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29403
PANC 03.27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.944872
BL2185 (TSC2)	NURSA Protein Complexes	1.0	null
RPL7L1	Pathway Commons Protein-Protein Interactions	1.0	null
ALDH3A2	Pathway Commons Protein-Protein Interactions	1.0	null
TGM2	Pathway Commons Protein-Protein Interactions	1.0	null
atp binding	GO Molecular Function Annotations 2015	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-E1-A7YV-01A-11R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HOP-92	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Mutation Profiles	1.0	null
NPM1	Pathway Commons Protein-Protein Interactions	1.0	null
ACTN4	Pathway Commons Protein-Protein Interactions	1.0	null
PSMC6	Pathway Commons Protein-Protein Interactions	1.0	null
NAMALWA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.75862
Superior colliculus, motor related, intermediate white layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.57689
NAA15	Pathway Commons Protein-Protein Interactions	1.0	null
TP63_01_329	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	0.78433
b16a	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.868
FADU	CCLE Cell Line Gene CNV Profiles	-1.0	-1.82526
MYH13	Pathway Commons Protein-Protein Interactions	1.0	null
Muscular Dystrophy	DisGeNET Gene-Disease Associations	1.0	null
MEL-JUSO	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A2M6-06A-12R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HC-1	Sanger Dependency Map Cancer Cell Line Proteomics	1.0	2.83356
DIAPH1	Pathway Commons Protein-Protein Interactions	1.0	null
ACTR3	Pathway Commons Protein-Protein Interactions	1.0	null
Lateral posterior nucleus of the thalamus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.00174
RAP2B	Pathway Commons Protein-Protein Interactions	1.0	null
periventricular mantle of isBM	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.0402
Anteroventral preoptic nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.13291
Carcinoma cell	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Lung squamous cell carcinoma_LUSC_TCGA-37-3792-01A-01R-0980-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
intracellular part	GO Cellular Component Annotations 2015	1.0	null
Medial geniculate complex, ventral part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.29513
LRPPRC	Pathway Commons Protein-Protein Interactions	1.0	null
STAT3_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Colorectal Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
RBM39	Pathway Commons Protein-Protein Interactions	1.0	null
RPL27	Pathway Commons Protein-Protein Interactions	1.0	null
GSE221327_6_v_0_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
nucleoside phosphate binding	GO Molecular Function Annotations 2015	1.0	null
ion binding	GO Molecular Function Annotations 2015	1.0	null
STX4	Pathway Commons Protein-Protein Interactions	1.0	null
GATA1	ChEA Transcription Factor Targets	1.0	null
Mental Depression	DisGeNET Gene-Disease Associations	1.0	null
DGAT2L7P	Pathway Commons Protein-Protein Interactions	1.0	null
GSE192663_3_v_5_acly_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GSE221327_10_v_2_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
H3K27me3_kidney epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Entorhinal area, lateral part, layer 3	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.56861
STAT3_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Gestational Diabetes	DisGeNET Gene-Phenotype Associations	1.0	null
MDN1	Pathway Commons Protein-Protein Interactions	1.0	null
umbilicalcord	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-1.96371
ZC3HAV1L	Pathway Commons Protein-Protein Interactions	1.0	null
MEWO cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.897
HSPA9	Pathway Commons Protein-Protein Interactions	1.0	null
Glioma	DisGeNET Gene-Disease Associations	1.0	null
CEBPA-20513432-MACROPHAGES-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
TMOD3	Pathway Commons Protein-Protein Interactions	1.0	null
NCIH2286_LUNG	CCLE Cell Line Proteomics	1.0	4.54256
NUP214	Pathway Commons Protein-Protein Interactions	1.0	null
2,6-Dichlorophenethylamine	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.92
THRAP3	Pathway Commons Protein-Protein Interactions	1.0	null
RBBP6	Pathway Commons Protein-Protein Interactions	1.0	null
RDES	DepMap CRISPR Gene Dependency	1.0	3.90141
superficial stratum of p3ZL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.63628
H3K9ac_CD14-positive monocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Cytoskeletal regulation by Rho GTPase	PANTHER Pathways	1.0	null
outer CP in caudal cingulate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.40903
GSE233679_14_v_15_nicotinamide_human	RummaGEO Drug Perturbation Signatures	1.0	null
MCM5	Pathway Commons Protein-Protein Interactions	1.0	null
SB 218795	DeepCoverMOA Drug Mechanisms of Action	1.0	0.73
DU4475	CCLE Cell Line Gene CNV Profiles	-1.0	-1.63023
BL5618 (DAXX)	NURSA Protein Complexes	1.0	null
LYAR	Pathway Commons Protein-Protein Interactions	1.0	null
Prostate Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
Sleep-Disordered Breathing	DisGeNET Gene-Disease Associations	1.0	null
BRD4-25478319-HGPS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
HCC1171	CCLE Cell Line Gene CNV Profiles	1.0	1.71491
GALE	Pathway Commons Protein-Protein Interactions	1.0	null
GSE206984_1_v_0_bortezomib_human	RummaGEO Drug Perturbation Signatures	1.0	null
VZ in thalamic region	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-2.98099
EIF4A1	Pathway Commons Protein-Protein Interactions	1.0	null
NARS	Pathway Commons Protein-Protein Interactions	1.0	null
Paliperidone	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.39
ZNF207	Pathway Commons Protein-Protein Interactions	1.0	null
epithelioma cell	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
ERH	Pathway Commons Protein-Protein Interactions	1.0	null
COLO 201	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.906106
Birth weight	GWAS Catalog SNP-Phenotype Associations 2025	1.0	1.50458
RPL14	Pathway Commons Protein-Protein Interactions	1.0	null
Secondary motor area, layer 2/3	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.37082
LMSU	CCLE Cell Line Gene CNV Profiles	-1.0	-1.91127
Kidney renal papillary cell carcinoma_KIRP_TCGA-BQ-5894-01A-11R-1592-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lalistat1	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.35
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4985-01A-01R-1334-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
substantia nigra, pars reticulata, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.46094
Crus 2, molecular layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.04081
MRPS11	Pathway Commons Protein-Protein Interactions	1.0	null
TCF12_ECC-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SEC24B	Pathway Commons Protein-Protein Interactions	1.0	null
BL2750 (SNW1)	NURSA Protein Complexes	1.0	null
EN2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.3998
parvocellular part of r8LRt	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.21927
GSE146982_7_v_6_metformin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
PMC5524348-pone.0181667.s005.xlsx-Inflammation-MINT_SPEN	Rummagene Transcription Factor Associations 2026	1.0	null
RPL15	Pathway Commons Protein-Protein Interactions	1.0	null
A-375 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.078
PMC11541041-ab-24-0283-Supplementary-Table-3.pdf-1-HOXA11_HOXA11	Rummagene Transcription Factor Associations 2026	1.0	null
occipital pole, left, lateral aspect	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.66011
MOB1B	Pathway Commons Protein-Protein Interactions	1.0	null
epithelium	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
MYH7	Pathway Commons Protein-Protein Interactions	1.0	null
FUS	Pathway Commons Protein-Protein Interactions	1.0	null
DIMT1	Pathway Commons Protein-Protein Interactions	1.0	null
hsa-miR-548a-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
PMC8242083-41467_2021_24064_MOESM4_ESM.txt--HSF1_HSF1	Rummagene Transcription Factor Associations 2026	1.0	null
SCABER	CCLE Cell Line Gene CNV Profiles	1.0	1.99087
PMC7397849-supp_gad.338681.120_Supplemental_Table_S3.xlsx-S3L_Peaks_2SA-YAP1_TEAD4-Unnamed_14_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
KRT75	Pathway Commons Protein-Protein Interactions	1.0	null
GM2A	Pathway Commons Protein-Protein Interactions	1.0	null
SMARCC1	Pathway Commons Protein-Protein Interactions	1.0	null
hsa-miR-10a	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
PCMT1	Pathway Commons Protein-Protein Interactions	1.0	null
TRA2A	Pathway Commons Protein-Protein Interactions	1.0	null
small molecule binding	GO Molecular Function Annotations 2015	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-4688-01A-01R-1277-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052449
PJ34	DeepCoverMOA Drug Mechanisms of Action	1.0	0.43
H3K4me1_mammary epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
HIST2H2AB	Pathway Commons Protein-Protein Interactions	1.0	null
GSE203181_0_v_1_phosphoramidon_human	RummaGEO Drug Perturbation Signatures	-1.0	null
PMC12775252-18_2025_5991_MOESM3_ESM.xlsx-Sheet1-Supplementary_Table_2_Up-_and_down-regulated_genes_in_TCF7L2-depleted_EVT_compared_to_control_EVT_TCF7L2	Rummagene Transcription Factor Associations 2026	1.0	null
CORO1B	Pathway Commons Protein-Protein Interactions	1.0	null
lower limb region of M1	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.22894
Ventral part of the lateral geniculate complex	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.4803
LNCaP-Clone-FGC	Sanger Dependency Map Cancer Cell Line Proteomics	-1.0	-2.9516
WDFY3	Pathway Commons Protein-Protein Interactions	1.0	null
NAT10	Pathway Commons Protein-Protein Interactions	1.0	null
HNRNPA1	Pathway Commons Protein-Protein Interactions	1.0	null
POFUT2	Pathway Commons Protein-Protein Interactions	1.0	null
GSE128076_2_v_3_doxycycline_human	RummaGEO Drug Perturbation Signatures	1.0	null
NR3C1	ChEA Transcription Factor Targets	1.0	null
PFEIFFER	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19522
CLTC	Pathway Commons Protein-Protein Interactions	1.0	null
PMC7397849-supp_gad.338681.120_Supplemental_Table_S3.xlsx-S3K_Peaks_wtYAP1_TEAD4-Unnamed_14_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
YAE1D1	Pathway Commons Protein-Protein Interactions	1.0	null
Iclaprim	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.53
GSE238018_3_v_5_mxra8_human	RummaGEO Gene Perturbation Signatures	-1.0	null
HNRNPAB	Pathway Commons Protein-Protein Interactions	1.0	null
magnocellular superficial hypothalamic nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.7091
Primary visual area	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.65719
VPS35	Pathway Commons Protein-Protein Interactions	1.0	null
POLR1A	Pathway Commons Protein-Protein Interactions	1.0	null
p3h3	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.228
RPL5	Pathway Commons Protein-Protein Interactions	1.0	null
SK-MES-1	Sanger Dependency Map Cancer Cell Line Proteomics	1.0	1.79444
liver cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.437972
Parkinson Disease	DisGeNET Gene-Disease Associations	1.0	null
shell of SCH	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.2419
Perturb_8874_OE_TCF21_SRP081577	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-20.0
Indapamide	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.49
RAB8A	Pathway Commons Protein-Protein Interactions	1.0	null
Rupatadine	DeepCoverMOA Drug Mechanisms of Action	1.0	0.41
TEAD4_ECC-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hsa-miR-3140-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
Tetrindole	DeepCoverMOA Drug Mechanisms of Action	-1.0	-1.13
SHMT1	Pathway Commons Protein-Protein Interactions	1.0	null
Depression	DisGeNET Gene-Phenotype Associations	1.0	null
STAT3	ENCODE Transcription Factor Targets	1.0	null
BACH2	Pathway Commons Protein-Protein Interactions	1.0	null
DOCK7	Pathway Commons Protein-Protein Interactions	1.0	null
Disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.525
HNRNPK	Pathway Commons Protein-Protein Interactions	1.0	null
UMUC9	DepMap CRISPR Gene Dependency	1.0	2.84802
TARS	Pathway Commons Protein-Protein Interactions	1.0	null
pregeniculate nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.6314
HTATSF1	Pathway Commons Protein-Protein Interactions	1.0	null
SC-6243 (TP53)	NURSA Protein Complexes	1.0	null
GSE138050,GSE148257_1_v_2_progesterone_human	RummaGEO Drug Perturbation Signatures	-1.0	null
HDLBP	Pathway Commons Protein-Protein Interactions	1.0	null
GSE142210_3_v_8_panobinostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
Perturb_7427_KD_PTBP1/PTBP2_SRP059242	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	7.55872
MYH6	Pathway Commons Protein-Protein Interactions	1.0	null
SEC23A	Pathway Commons Protein-Protein Interactions	1.0	null
CHUK	Pathway Commons Protein-Protein Interactions	1.0	null
PLOD1	Pathway Commons Protein-Protein Interactions	1.0	null
MYL6	Pathway Commons Protein-Protein Interactions	1.0	null
outer CP in caudal perirhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.26101
SQSTM1	Pathway Commons Protein-Protein Interactions	1.0	null
AIMP2	Pathway Commons Protein-Protein Interactions	1.0	null
PRKAR2A	Pathway Commons Protein-Protein Interactions	1.0	null
MRPS6	Pathway Commons Protein-Protein Interactions	1.0	null
DGKZ	Pathway Commons Protein-Protein Interactions	1.0	null
NCIH2004RT	DepMap CRISPR Gene Dependency	1.0	3.22167
BL1688 (MAD1L1)	NURSA Protein Complexes	1.0	null
PSMC4	Pathway Commons Protein-Protein Interactions	1.0	null
HDAC1	Pathway Commons Protein-Protein Interactions	1.0	null
RAE1	Pathway Commons Protein-Protein Interactions	1.0	null
HL60	CCLE Cell Line Gene CNV Profiles	-1.0	-1.41443
dorsorostral division of MFC (area 32)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.13498
GSE214931_2_v_0_temozolomide_human	RummaGEO Drug Perturbation Signatures	1.0	null
STOM	Pathway Commons Protein-Protein Interactions	1.0	null
Sapropterin	DeepCoverMOA Drug Mechanisms of Action	1.0	0.65
HSP90AA1	Pathway Commons Protein-Protein Interactions	1.0	null
Squamous Cell Carcinoma Of Esophagus	DisGeNET Gene-Disease Associations	1.0	null
hsa-miR-3654	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
HSPA6	Pathway Commons Protein-Protein Interactions	1.0	null
PMC8379183-41467_2021_25326_MOESM9_ESM.xlsx-SALL4_unique_peaks-Unnamed_14_SALL4	Rummagene Transcription Factor Associations 2026	1.0	null
GRSF1	Pathway Commons Protein-Protein Interactions	1.0	null
HNRNPF	Pathway Commons Protein-Protein Interactions	1.0	null
NXF1	Pathway Commons Protein-Protein Interactions	1.0	null
BL1571 (ITCH)	NURSA Protein Complexes	1.0	null
SKMES1	CCLE Cell Line Gene CNV Profiles	1.0	2.01473
RBPJ	ChEA Transcription Factor Targets	1.0	null
PMC12774775-mmc2.xlsx-PAR_RARG_merge_q5_Narrow_subKO-Gene_Symbol_RARG	Rummagene Transcription Factor Associations 2026	1.0	null
SK-MES-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.25172
cell	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
GSE111247_14_v_6_temozolomide_human	RummaGEO Drug Perturbation Signatures	1.0	null
GATA1-19941826-K562-human	ChEA Transcription Factor Binding Site Profiles	1.0	null
NCIH2023	CCLE Cell Line Gene CNV Profiles	1.0	2.83762
RUVBL2	Pathway Commons Protein-Protein Interactions	1.0	null
intermediate stratum of DgSe	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.02014
RBPJ-21746931-IB4-LCL-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
ERBB4	Pathway Commons Protein-Protein Interactions	1.0	null
Kidney renal papillary cell carcinoma_KIRP_TCGA-BQ-7061-11A-01R-1965-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
EBNA2-21746931-IB4-LCL-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
ZBTB26	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.1199
CSNK2A1	Pathway Commons Protein-Protein Interactions	1.0	null
RAB15	Pathway Commons Protein-Protein Interactions	1.0	null
HT-115	COSMIC Cell Line Gene Mutation Profiles	1.0	null
PRPF8	Pathway Commons Protein-Protein Interactions	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-CH-5769-11A-01R-1580-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE190316,GSE190324_10_v_11_rbm4_human	RummaGEO Gene Perturbation Signatures	1.0	null
extracellular organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
GSE221327_4_v_2_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
PSPC1	Pathway Commons Protein-Protein Interactions	1.0	null
ARHGEF6	Pathway Commons Protein-Protein Interactions	1.0	null
BATF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.756
BL4102 (PRMT6)	NURSA Protein Complexes	1.0	null
PPM1B	Pathway Commons Protein-Protein Interactions	1.0	null
MITF-21258399-MELANOMA-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
JDP2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.7022
SCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.906917
RPS6	Pathway Commons Protein-Protein Interactions	1.0	null
Breast cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.136
olfactory bulb	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.19518
KRT35	Pathway Commons Protein-Protein Interactions	1.0	null
Methylnaltrexone	DeepCoverMOA Drug Mechanisms of Action	1.0	0.48
Bronchopulmonary Dysplasia	DisGeNET Gene-Disease Associations	1.0	null
RPL19	Pathway Commons Protein-Protein Interactions	1.0	null
GMPS	Pathway Commons Protein-Protein Interactions	1.0	null
PMC8046804-41467_2021_22478_MOESM11_ESM.xlsx-Del_AA-TCGA-Unnamed_22_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
intermediate stratum of m1Lim	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.75245
Ticagrelor	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.32
trochlear nucleus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.542
NDUFS3	Pathway Commons Protein-Protein Interactions	1.0	null
superficial stratum of r7BL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.60179
ACTG1	Pathway Commons Protein-Protein Interactions	1.0	null
ERRFI1	Pathway Commons Protein-Protein Interactions	1.0	null
Olvance	DeepCoverMOA Drug Mechanisms of Action	1.0	0.3
ICC137	DepMap CRISPR Gene Dependency	1.0	2.19749
HOXB8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.5147
SNRPF	Pathway Commons Protein-Protein Interactions	1.0	null
GSE140441_2_v_0_temozolomide_human	RummaGEO Drug Perturbation Signatures	1.0	null
PMC8379183-41467_2021_25326_MOESM9_ESM.xlsx-SALL4_unique_peaks-Unnamed_15_SALL4	Rummagene Transcription Factor Associations 2026	1.0	null
NBR1	Pathway Commons Protein-Protein Interactions	1.0	null
hsa-miR-586	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
GSE221327_8_v_2_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
Kidney renal papillary cell carcinoma_KIRP_TCGA-A4-7734-01A-11R-A32Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
COPRS	Pathway Commons Protein-Protein Interactions	1.0	null
cytoskeleton	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
H3K4me1_IMR90	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
GATA2-21571218-MEGAKARYOCYTES-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
GSE169205_4_v_7_sirt5_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Sitaxsentan	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.33
SMARCA4-23332759-OLIGODENDROCYTES-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
GSE210101,GSE210114_6_v_3_urod_human	RummaGEO Gene Perturbation Signatures	1.0	null
Kidney renal papillary cell carcinoma_KIRP_TCGA-BQ-7049-01A-11R-1965-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Stiripentol	DeepCoverMOA Drug Mechanisms of Action	1.0	0.24
BL2158 (USP34)	NURSA Protein Complexes	1.0	null
RAB3GAP2	Pathway Commons Protein-Protein Interactions	1.0	null
DGKE	Pathway Commons Protein-Protein Interactions	1.0	null
MRPS22	Pathway Commons Protein-Protein Interactions	1.0	null
BL1016 (INTS6)	NURSA Protein Complexes	1.0	null
NB1	DepMap CRISPR Gene Dependency	1.0	6.36531
G44	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.92334
ventral isthmic part of dorsal raphe nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.0402
NCI-H1092	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.855749
PMC9464213-41467_2022_33063_MOESM9_ESM.xlsx-BNC2_peptides-gene_name_BNC2	Rummagene Transcription Factor Associations 2026	1.0	null
ESR1	ChEA Transcription Factor Targets	1.0	null
GPC6	Pathway Commons Protein-Protein Interactions	1.0	null
other source	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.067371
PMC7072578__F2	PFOCR Pathway Figure Associations 2023	1.0	null
CYP2C8	Pathway Commons Protein-Protein Interactions	1.0	null
Histone acetyltransferase complex	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
GSE230744,GSE237803_5_v_3_hira_human	RummaGEO Gene Perturbation Signatures	1.0	null
EIF5B	Pathway Commons Protein-Protein Interactions	1.0	null
Agenesis	DisGeNET Gene-Disease Associations	1.0	null
GSE146982_4_v_5_gpd1_human	RummaGEO Gene Perturbation Signatures	1.0	null
HNRNPUL1	Pathway Commons Protein-Protein Interactions	1.0	null
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-C5-A2LT-01A-11R-A18M-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SERPINB3	Pathway Commons Protein-Protein Interactions	1.0	null
RARA::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.8696
RHOJ	Pathway Commons Protein-Protein Interactions	1.0	null
Nucleus of the brachium of the inferior colliculus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.65514
SEC61A1	Pathway Commons Protein-Protein Interactions	1.0	null
DSP	Pathway Commons Protein-Protein Interactions	1.0	null
FKBP8	Pathway Commons Protein-Protein Interactions	1.0	null
POLR2A	ENCODE Transcription Factor Targets	1.0	null
hsa-miR-4668-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
GSE176144_0_v_1_zfc3h1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
ZNF76	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	57.5858
ALDH9A1	Pathway Commons Protein-Protein Interactions	1.0	null
PSMA6	Pathway Commons Protein-Protein Interactions	1.0	null
CDC37	Pathway Commons Protein-Protein Interactions	1.0	null
HP1BP3	Pathway Commons Protein-Protein Interactions	1.0	null
RPL10	Pathway Commons Protein-Protein Interactions	1.0	null
GSE193588_3_v_2_pax3_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE223908,GSE223909_4_v_8_serpinb3_human	RummaGEO Gene Perturbation Signatures	-1.0	null
ZNF638	Pathway Commons Protein-Protein Interactions	1.0	null
ATF3-23680149-GBM1-GSC-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4994-01A-01R-1334-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
EIF3B	Pathway Commons Protein-Protein Interactions	1.0	null
GATA1-21571218-MEGAKARYOCYTES-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
EPI-2180-1 (EZR)	NURSA Protein Complexes	1.0	null
plicamycin_homo sapiens_gpl570_gse25127	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
GSE157960_0_v_3_progesterone_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
SK-MEL-28 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.019
GSE210101,GSE210114_0_v_9_urod_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE216540_10_v_6_fulvestrant_human	RummaGEO Drug Perturbation Signatures	1.0	null
HDAC2	Pathway Commons Protein-Protein Interactions	1.0	null
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-MY-A913-01A-11R-A37O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
superficial stratum of SC	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.19615
CAPRIN1	NURSA Protein-Protein Interactions	1.0	0.18629
Bladder Urothelial Carcinoma_BLCA_TCGA-FD-A6TD-01A-51R-A33J-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
UBB	Pathway Commons Protein-Protein Interactions	1.0	null
KMS11	DepMap CRISPR Gene Dependency	1.0	3.1262
DDX18	Pathway Commons Protein-Protein Interactions	1.0	null
H3118	COSMIC Cell Line Gene Mutation Profiles	1.0	null
ML-265	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.28
H4K8ac_H9	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
ILK	Pathway Commons Protein-Protein Interactions	1.0	null
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCLE Cell Line Proteomics	1.0	2.40574
Head and Neck squamous cell carcinoma_HNSC_TCGA-UF-A7JV-01A-11R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Pheochromocytoma and Paraganglioma_PCPG_TCGA-RW-A8AZ-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
JHH-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.975222
E2F4	ENCODE Transcription Factor Targets	1.0	null
MDST8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12536
GSE218060_1_v_6_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CQ-7067-01A-11R-2232-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MGA::EVX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.1647
PMC8650352-JCB_202012097_DataS1.xlsx-VHL_KD_proteinGroups-Gene_names_AR	Rummagene Transcription Factor Associations 2026	1.0	null
PMC5578490-pgen.1006879.s020.xlsx-ETV1_ChiP_pks_tags_txt-Gene_Name_ETV1	Rummagene Transcription Factor Associations 2026	1.0	null
NCI-H847	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.868819
Pancreatic adenocarcinoma_PAAD_TCGA-F2-A44G-01A-11R-A26U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HEC-1-A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.91808
GSE128076_2_v_0_doxycycline_human	RummaGEO Drug Perturbation Signatures	1.0	null
SUMO1	Pathway Commons Protein-Protein Interactions	1.0	null
Leprosy	DisGeNET Gene-Disease Associations	1.0	null
PU.1-20176806-MACROPHAGES-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
intermediate stratum of SeDg	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.08922
Pamoic Acid	DeepCoverMOA Drug Mechanisms of Action	1.0	0.28
TCF12_ECC-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hsa-miR-3145-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
INT-747	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.38
outer CP in dorsomedial frontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.955714
NFKB1-27076634-BEAS2B-HUMAN-LUNG-INFLAMMATION	ChEA Transcription Factor Targets 2022	1.0	null
GSTP1	Pathway Commons Protein-Protein Interactions	1.0	null
Foxj3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	37.1991
H2AFZ_mammary epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
viscus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052229
neuron projection	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.098752
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-C5-A7XC-01A-11R-A38B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
FSCN1	Pathway Commons Protein-Protein Interactions	1.0	null
LY 344864	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.84
Alx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	29.3693
EXOSC9	Pathway Commons Protein-Protein Interactions	1.0	null
NCBP1	Pathway Commons Protein-Protein Interactions	1.0	null
SEPT2	Pathway Commons Protein-Protein Interactions	1.0	null
GABARAP	Hub Proteins Protein-Protein Interactions	1.0	null
dorsal part of PHyB	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.03894
TUBA4A	Pathway Commons Protein-Protein Interactions	1.0	null
PAK7	Pathway Commons Protein-Protein Interactions	1.0	null
PFN1	Pathway Commons Protein-Protein Interactions	1.0	null
MDAMB231_BREAST	CCLE Cell Line Proteomics	1.0	2.74691
FLI1-21867929-TH2-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
Lobule II	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.03525
NFI-21473784-ESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
SMAP2	Pathway Commons Protein-Protein Interactions	1.0	null
PMC10913870-pr3c00632_si_001.pdf-101-ZNF771_ZNF771	Rummagene Transcription Factor Associations 2026	1.0	null
r2 part of ventral lateral lemniscal nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.18643
YY1	ChEA Transcription Factor Targets	1.0	null
CS1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-HG-A2PA-01A-11R-A213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BL2794 (TRIM24)	NURSA Protein Complexes	1.0	null
Arterial smooth muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.203
MYL4	Pathway Commons Protein-Protein Interactions	1.0	null
PMC12186250-NIHMS2085662-supplement-3.xlsx-4111_TEAD4_peaks-Nearest_Ensembl_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
SG in posterior frontal cortex (motor cortex)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.0342
S100A8	Pathway Commons Protein-Protein Interactions	1.0	null
PIK3CA	Pathway Commons Protein-Protein Interactions	1.0	null
SAFB2	Pathway Commons Protein-Protein Interactions	1.0	null
PDIA3	Pathway Commons Protein-Protein Interactions	1.0	null
MAP1S	Pathway Commons Protein-Protein Interactions	1.0	null
Hoxa13	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	36.0278
Hepatobiliary disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.397
FOXK1	Pathway Commons Protein-Protein Interactions	1.0	null
POLR2E	Pathway Commons Protein-Protein Interactions	1.0	null
HNRNPH1	Pathway Commons Protein-Protein Interactions	1.0	null
Primary somatosensory area, upper limb, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.14422
CD3EAP	Pathway Commons Protein-Protein Interactions	1.0	null
GSK2334470	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.9
POLR2A_MCF-7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ab92734 (PJA2)	NURSA Protein Complexes	1.0	null
TAL1-21186366-BM-HSCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
MYC_MCF-7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Ethiprole	DeepCoverMOA Drug Mechanisms of Action	1.0	0.22
Liver disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.394
POU6F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.5323
ABCF1	Pathway Commons Protein-Protein Interactions	1.0	null
KRT82	Pathway Commons Protein-Protein Interactions	1.0	null
NIBR189	DeepCoverMOA Drug Mechanisms of Action	1.0	0.34
PRDX1	Pathway Commons Protein-Protein Interactions	1.0	null
Geniculate group, ventral thalamus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.47648
EEF1A1	Pathway Commons Protein-Protein Interactions	1.0	null
EHMT2_KD_GSE34925_693_human_MDA-MB231 cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
Sarcoma_SARC_TCGA-HS-A5N8-01A-11R-A26T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PRKCZ	Pathway Commons Protein-Protein Interactions	1.0	null
FLG	Pathway Commons Protein-Protein Interactions	1.0	null
SPOTS complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.003
BAG6	Pathway Commons Protein-Protein Interactions	1.0	null
GATA1-21571218-MEGAKARYOCYTES-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
AIFM1	Pathway Commons Protein-Protein Interactions	1.0	null
PDE-9i	DeepCoverMOA Drug Mechanisms of Action	1.0	0.67
RAB39A	Pathway Commons Protein-Protein Interactions	1.0	null
KDM2B-26808549-CHIP-SEQ-REH-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
GSE210101,GSE210114_8_v_10_urod_human	RummaGEO Gene Perturbation Signatures	1.0	null
Castanospermine	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.88
SYNCRIP	Pathway Commons Protein-Protein Interactions	1.0	null
BL435 (NCOA1)	NURSA Protein Complexes	1.0	null
TC-71	COSMIC Cell Line Gene Mutation Profiles	1.0	null
hsa-miR-524-5p	TargetScan Predicted Conserved microRNA Targets	1.0	0.49473
HSPA7	Pathway Commons Protein-Protein Interactions	1.0	null
Lomitapide	DeepCoverMOA Drug Mechanisms of Action	1.0	0.23
Head and Neck squamous cell carcinoma_HNSC_TCGA-CN-4733-01A-02R-1873-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ZM 241385	DeepCoverMOA Drug Mechanisms of Action	-1.0	-1.58
FOXO4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.6238
superficial stratum of PSPa	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.19609
TF	Pathway Commons Protein-Protein Interactions	1.0	null
CH-223191	DeepCoverMOA Drug Mechanisms of Action	1.0	0.32
PDHB	Pathway Commons Protein-Protein Interactions	1.0	null
EFTUD2	Pathway Commons Protein-Protein Interactions	1.0	null
CPC-N	Sanger Dependency Map Cancer Cell Line Proteomics	-1.0	-2.34472
HCC2157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24472
EEF2	Pathway Commons Protein-Protein Interactions	1.0	null
YWHAB	Pathway Commons Protein-Protein Interactions	1.0	null
TXN	Pathway Commons Protein-Protein Interactions	1.0	null
LIMA1	Pathway Commons Protein-Protein Interactions	1.0	null
BL1705 (PHB2)	NURSA Protein Complexes	1.0	null
RAB35	Pathway Commons Protein-Protein Interactions	1.0	null
BL2223 (COL4A3BP)	NURSA Protein Complexes	1.0	null
TRIM28	ENCODE Transcription Factor Targets	1.0	null
OE19	CCLE Cell Line Gene CNV Profiles	-1.0	-2.05286
DSG4	Pathway Commons Protein-Protein Interactions	1.0	null
PRPS2	Pathway Commons Protein-Protein Interactions	1.0	null
Cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.413
Endometriosis_Endometrium_GSE6364	GEO Signatures of Differentially Expressed Genes for Diseases	-1.0	-1.37685
BL5941 (WNK1)	NURSA Protein Complexes	1.0	null
NAPG	Pathway Commons Protein-Protein Interactions	1.0	null
PUF60	Pathway Commons Protein-Protein Interactions	1.0	null
Malaria	DisGeNET Gene-Disease Associations	1.0	null
GSE101239_3_v_2_valproic acid_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
CSNK1A1L	Pathway Commons Protein-Protein Interactions	1.0	null
inner SZ in posterior parahippocampal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.870159
BL6699 (EIF3H)	NURSA Protein Complexes	1.0	null
PURA	Pathway Commons Protein-Protein Interactions	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CQ-6218-01A-11R-1915-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RHOQ	Pathway Commons Protein-Protein Interactions	1.0	null
PMC3443648-1752-0509-6-89-S1.xls-Sheet1-NFYA_NFYA	Rummagene Transcription Factor Associations 2026	1.0	null
layer 3 of PCx	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.45733
NCI-H2461	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12536
polymorphic layer of rostral subiculum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.12383
STK746869	DeepCoverMOA Drug Mechanisms of Action	1.0	0.36
Whooping Cough Due To Unspecified Organism	DisGeNET Gene-Disease Associations	1.0	null
S100A2	Pathway Commons Protein-Protein Interactions	1.0	null
CBC592 (KLHL13)	NURSA Protein Complexes	1.0	null
PLS3	Pathway Commons Protein-Protein Interactions	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-YL-A8HK-01A-11R-A36G-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
IQCB1	Pathway Commons Protein-Protein Interactions	1.0	null
MON	DepMap CRISPR Gene Dependency	1.0	2.18827
Nucleus ambiguus, ventral division	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.95713
Liver hepatocellular carcinoma_LIHC_TCGA-DD-A1EC-01A-21R-A131-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC8423434-mmc7.xlsx-SOX2_HENSM-Genes_n_2733_SOX2	Rummagene Transcription Factor Associations 2026	1.0	null
outer CP in midlateral extrastriate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.38761
HOXB2::ELK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.5998
Inclusion Body Myopathy	DisGeNET Gene-Disease Associations	1.0	null
KIAA0368	Pathway Commons Protein-Protein Interactions	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CQ-5326-01A-01R-1873-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
FOXA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.9818
RB1_KD_GSE50532_593_human_OSTEOBLASTS	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-GS-A9TV-01A-11R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Neoplasm Metastasis	DisGeNET Gene-Phenotype Associations	1.0	null
LRRK2	Pathway Commons Protein-Protein Interactions	1.0	null
NUDT1	Pathway Commons Protein-Protein Interactions	1.0	null
PPP2R2B	Pathway Commons Protein-Protein Interactions	1.0	null
NCI-H1975	Sanger Dependency Map Cancer Cell Line Proteomics	1.0	2.00407
HMGB2	Pathway Commons Protein-Protein Interactions	1.0	null
RPL31	Pathway Commons Protein-Protein Interactions	1.0	null
GSE182179_0_v_3_kdsr_human	RummaGEO Gene Perturbation Signatures	1.0	null
YD8	DepMap CRISPR Gene Dependency	1.0	8.79158
QIMR-WIL	Sanger Dependency Map Cancer Cell Line Proteomics	1.0	2.37726
Prostate adenocarcinoma_PRAD_TCGA-J4-A83J-01A-11R-A36G-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
POU2F1-35413990-HUMAN-ARPOSCRPROSTATECANCER	ChEA Transcription Factor Targets 2022	1.0	null
PRPF38B	Pathway Commons Protein-Protein Interactions	1.0	null
intracellular	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
BMS 303141	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.32
Prostate adenocarcinoma_PRAD_TCGA-CH-5743-01A-21R-1580-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE118816_2_v_3_myo1c_human	RummaGEO Gene Perturbation Signatures	1.0	null
SCRIB	Pathway Commons Protein-Protein Interactions	1.0	null
Rectum adenocarcinoma_READ_TCGA-AF-5654-01A-01R-1660-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE76425_0_v_12_lenalidomide_human	RummaGEO Drug Perturbation Signatures	1.0	null
Abiraterone2	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.28
EXOSC2	Pathway Commons Protein-Protein Interactions	1.0	null
T98G	COSMIC Cell Line Gene Mutation Profiles	1.0	null
CSNK2B	Pathway Commons Protein-Protein Interactions	1.0	null
Pregnancy Associated Hypertension	DisGeNET Gene-Phenotype Associations	1.0	null
RPS5	Pathway Commons Protein-Protein Interactions	1.0	null
MATR3	Pathway Commons Protein-Protein Interactions	1.0	null
CC-401	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.63
BL9709 (LIMK1)	NURSA Protein Complexes	1.0	null
UBD	Pathway Commons Protein-Protein Interactions	1.0	null
hsa-miR-4534	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
PMC7415402-oncotarget-11-2995-s004.xlsx-EWS-FLI1_Type_1_vs_Type_2-Gene_Symbol_FLI1	Rummagene Transcription Factor Associations 2026	1.0	null
HSPA4	Pathway Commons Protein-Protein Interactions	1.0	null
F8	Pathway Commons Protein-Protein Interactions	1.0	null
SDC3	Pathway Commons Protein-Protein Interactions	1.0	null
NCI-H1703 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.656
PSMB3	Pathway Commons Protein-Protein Interactions	1.0	null
LRRC15	Pathway Commons Protein-Protein Interactions	1.0	null
COPE	Pathway Commons Protein-Protein Interactions	1.0	null
PMC8423434-mmc7.xlsx-SOX2_Primed-Genes_n_3042_SOX2	Rummagene Transcription Factor Associations 2026	1.0	null
synapse	SynGO Synaptic Gene Annotations	1.0	null
DMS 79	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2402
FASN	Pathway Commons Protein-Protein Interactions	1.0	null
CPNE1	Pathway Commons Protein-Protein Interactions	1.0	null
FOXO1::ELK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.1885
layer 1 of PCx	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.01446
Night sleep phenotypes	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.552288
Prostate adenocarcinoma_PRAD_TCGA-EJ-A46E-01A-31R-A250-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
QX 314	DeepCoverMOA Drug Mechanisms of Action	-1.0	-1.31
HIST3H3	Pathway Commons Protein-Protein Interactions	1.0	null
GSE195503_1_v_2_progesterone_human	RummaGEO Drug Perturbation Signatures	-1.0	null
HSD17B4	Pathway Commons Protein-Protein Interactions	1.0	null
BL2765 (HNRNPU)	NURSA Protein Complexes	1.0	null
RF9	DeepCoverMOA Drug Mechanisms of Action	-1.0	-0.32
GSE155972_0_v_1_setdb1_human	RummaGEO Gene Perturbation Signatures	1.0	null
DCD	Pathway Commons Protein-Protein Interactions	1.0	null
GSE233679_5_v_15_nicotinamide_human	RummaGEO Drug Perturbation Signatures	1.0	null
TARDBP	Pathway Commons Protein-Protein Interactions	1.0	null
BL4015 (PPP1R13B)	NURSA Protein Complexes	1.0	null
V, left, paravermis	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.90125
Offspring birth weight	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.569897
extracellular organelle	GO Cellular Component Annotations 2015	1.0	null
TKT	Pathway Commons Protein-Protein Interactions	1.0	null
PAIP2	Pathway Commons Protein-Protein Interactions	1.0	null
Rhodanine derivative38	DeepCoverMOA Drug Mechanisms of Action	1.0	0.27
PMC6499311-supp_gr.243345.118_Supplemental_Table_S8.xlsx-S8C_Het1A-HNF4A_2d_5x_closed-Nearest_Ensembl_HNF4A	Rummagene Transcription Factor Associations 2026	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-BA-6868-01B-12R-1915-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.050379
hepatoma cell	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Root primordium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.047
premotor cortex (area 6)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	2.50025
HSDL2	Pathway Commons Protein-Protein Interactions	1.0	null
I-II	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.337
BIN67	DepMap CRISPR Gene Dependency	1.0	2.69193
ARPC2	Pathway Commons Protein-Protein Interactions	1.0	null
PLRG1	Pathway Commons Protein-Protein Interactions	1.0	null
PAX6-23342162-BETA-FORBRAIN-LENS-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
RNPS1	Pathway Commons Protein-Protein Interactions	1.0	null
G6PD	Pathway Commons Protein-Protein Interactions	1.0	null
CBS	Pathway Commons Protein-Protein Interactions	1.0	null
GSE202434,GSE202438_3_v_5_talazoparib_human	RummaGEO Drug Perturbation Signatures	1.0	null
CHD2_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TOP2B-26459242-MCF-7-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
GSE210101,GSE210114_2_v_10_urod_human	RummaGEO Gene Perturbation Signatures	1.0	null
COA6	Pathway Commons Protein-Protein Interactions	1.0	null
organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041819
GSE186810,GSE186813_2_v_0_furin_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
STAT3_MCF 10A_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CPNE8	Pathway Commons Protein-Protein Interactions	1.0	null
PDCD11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.36035
KRT17	Pathway Commons Protein-Protein Interactions	1.0	null
NHP2	Pathway Commons Protein-Protein Interactions	1.0	null
RPS15A	Pathway Commons Protein-Protein Interactions	1.0	null
RAB5C	Pathway Commons Protein-Protein Interactions	1.0	null
non-membrane-bounded organelle	GO Cellular Component Annotations 2015	1.0	null
GSE48812_11_v_10_sulforaphane_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Genital Diseases, Female	CTD Gene-Disease Associations	1.0	1.13143
hsa-miR-299-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
Hepatitis A	DisGeNET Gene-Disease Associations	1.0	null
JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	57.132
PTCH2	Pathway Commons Protein-Protein Interactions	1.0	null
mainolfactoryepithelium.MOE.	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-1.32398
CDK3	Pathway Commons Protein-Protein Interactions	1.0	null
ANAPC1	Pathway Commons Protein-Protein Interactions	1.0	null
IGHM	Pathway Commons Protein-Protein Interactions	1.0	null
TUBB2A	Pathway Commons Protein-Protein Interactions	1.0	null
TCOF1	Pathway Commons Protein-Protein Interactions	1.0	null
Kidney renal papillary cell carcinoma_KIRP_TCGA-A4-7828-01A-11R-2139-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
TP53-22127205-IMR90-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
RPL23A	Pathway Commons Protein-Protein Interactions	1.0	null
Subgeniculate nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.52882
ETV5::HOXA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.5279
HDAC1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CUL9	Pathway Commons Protein-Protein Interactions	1.0	null
RPL35	Pathway Commons Protein-Protein Interactions	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-DK-A2HX-01A-12R-A18C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-KC-A4BL-01A-31R-A250-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HNRNPD	Pathway Commons Protein-Protein Interactions	1.0	null
Liver And Intrahepatic Biliary Tract Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
RPS3A	Pathway Commons Protein-Protein Interactions	1.0	null
viscus	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
LBR	Pathway Commons Protein-Protein Interactions	1.0	null
LRRC59	Pathway Commons Protein-Protein Interactions	1.0	null
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
DDX20	Pathway Commons Protein-Protein Interactions	1.0	null
r5 part of the oral Sp5 subnucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.47863
SRY-25088423-EMBRYONIC GONADS-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
Follicular thyroid cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.761
NCI-H187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01287
Runx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	23.863
LCP1	Pathway Commons Protein-Protein Interactions	1.0	null
POLR2A_MCF-7_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MPRIP	Pathway Commons Protein-Protein Interactions	1.0	null
ST13	Pathway Commons Protein-Protein Interactions	1.0	null
PMC5869742__F5	PFOCR Pathway Figure Associations 2023	1.0	null
NR1H4::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.6869
(4-Chlorobenzyl)pyridine	DeepCoverMOA Drug Mechanisms of Action	1.0	0.76
Tuberculosis	DisGeNET Gene-Disease Associations	1.0	null
(Z)-Pugnac	DeepCoverMOA Drug Mechanisms of Action	1.0	0.26
layer V of caudal entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.841956
SNRPB	Pathway Commons Protein-Protein Interactions	1.0	null
CLTCL1	Pathway Commons Protein-Protein Interactions	1.0	null
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-JW-A5VG-01A-11R-A28H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Natural killer cell	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.15
Primary visual area, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.34828
PMC10353540-Table_1.xlsx-HCC1954_AR_vs_HCC1954_A-ID_AR	Rummagene Transcription Factor Associations 2026	1.0	null
UBE2N	Pathway Commons Protein-Protein Interactions	1.0	null
PMC11906354-41588_2025_2087_MOESM4_ESM.xlsx-ST12-Unnamed_3_KLF6	Rummagene Transcription Factor Associations 2026	1.0	null
PMC11615365-41467_2024_54246_MOESM5_ESM.xlsx-RT112-Numb-KD_vs_Ctr-KD-ensemblGeneId_AR	Rummagene Transcription Factor Associations 2026	1.0	null
RAD21_IMR-90_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
C14orf166	Pathway Commons Protein-Protein Interactions	1.0	null
ZNF217	ChEA Transcription Factor Targets	1.0	null
AKR1C1	Pathway Commons Protein-Protein Interactions	1.0	null
female reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
intermediate stratum of p1Lim	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.07917
WBP2	Pathway Commons Protein-Protein Interactions	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-G9-6336-01A-11R-1789-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Foxj2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	23.0946
RPS23	Pathway Commons Protein-Protein Interactions	1.0	null
MTHFD1L	Pathway Commons Protein-Protein Interactions	1.0	null
EM2	DepMap CRISPR Gene Dependency	1.0	3.21222
caudal ganglionic eminence	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.63733
CDKN2A	Pathway Commons Protein-Protein Interactions	1.0	null
actin cytoskeleton	GO Cellular Component Annotations 2025	1.0	null
subbrachial nucleus, caudal part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.67304
DYNC1LI1	Pathway Commons Protein-Protein Interactions	1.0	null
PMC11330984-41467_2024_51229_MOESM6_ESM.xlsx-MYC_UP-ID_ENSEMBL_MYC	Rummagene Transcription Factor Associations 2026	1.0	null
Lobule II, molecular layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.00753
MAP1LC3A	Pathway Commons Protein-Protein Interactions	1.0	null
colo792	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.733
NCIH2228	CCLE Cell Line Gene CNV Profiles	1.0	1.36985
Kidney renal clear cell carcinoma_KIRC_TCGA-B4-5832-01A-11R-1672-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
T24_URINARY_TRACT	CCLE Cell Line Proteomics	1.0	4.5427
USP19	Pathway Commons Protein-Protein Interactions	1.0	null
PEBP1	Pathway Commons Protein-Protein Interactions	1.0	null
choroid plexus of the fourth ventricle	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.23488
HOXD8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.542
JVM-2	Sanger Dependency Map Cancer Cell Line Proteomics	1.0	2.54231
BL2753 (LCOR)	NURSA Protein Complexes	1.0	null
Irf1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	63.6389