association dataset threshold value standardized value FOSL2_HepG2_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null laterodorsal subdivision of area 8 Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.869704 hsa-miR-4673 TargetScan Predicted Conserved microRNA Targets 1.0 1.45615 inferior rostral gyrus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.51378 SETDB1 ENCODE Transcription Factor Targets 1.0 null H3K4me3_LNCaP clone FGC_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null WHSC1 ENCODE Transcription Factor Targets 1.0 null gastrointestinal tract TISSUES Experimental Tissue Protein Expression Evidence Scores 1.0 0.766457 SNU668 CCLE Cell Line Gene CNV Profiles -1.0 -1.82578 intracellular membrane-bounded organelle COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.663342 hematopoietic system TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null hsa-miR-4522 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.13535 lateral hypothalamic area, anterior region, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.973267 RCOR1_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null alimentary canal TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.061368 CHD7_H1-hESC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CEBPB_K562_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null SIN3A ENCODE Transcription Factor Targets 1.0 null hsa-miR-134 TargetScan Predicted Conserved microRNA Targets 1.0 0.336728 MYC-20876797-MEDULLOBLASTOMA-HUMAN ChEA Transcription Factor Binding Site Profiles 1.0 null WHSC1_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null MXI1 ENCODE Transcription Factor Targets 1.0 null placenta TISSUES Experimental Tissue Protein Expression Evidence Scores 1.0 0.766457 hematologic cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.044445 RBBP5 ENCODE Transcription Factor Targets 1.0 null hsa-miR-654-5p TargetScan Predicted Conserved microRNA Targets 1.0 0.348832 SP in caudal midinferior temporal cortex (area TF) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.832286 PMC11979751-table_s1_trajectoryderivation_elad055.xlsx-Cluster_DE_Genes_Summary-Cluster_2_AP2_Up_GTF3A Rummagene Transcription Factor Associations 2026 1.0 null NCI-H2803 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.909963 H3K4me3_skeletal muscle myoblast_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null nuclear part COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.663342 NCI-H889 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 2.25995 hsa-miR-548l TargetScan Predicted Conserved microRNA Targets 1.0 0.389112 YY1_ECC-1_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null VZ in midlateral temporal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.84458 Sentinel Node (Disorder) DisGeNET Gene-Disease Associations 1.0 null PMC4026482-pone.0097702.s010.xlsx-LPS_1_8FC_24hour-Symbol_IRF6 Rummagene Transcription Factor Associations 2026 1.0 null premotor cortex (area 6) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.850376 KDM1A_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-4742-3p TargetScan Predicted Conserved microRNA Targets 1.0 0.088999 HCC515 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.974716 EOMES_OE_GDS5077_65_human_RUES2 GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null KELLY CCLE Cell Line Gene CNV Profiles 1.0 1.55394 hsa-miR-4326 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.921135 MYC_K562_hg19_6 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-299-5p TargetScan Predicted Conserved microRNA Targets 1.0 0.541706 paraterminal gyrus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.05216 CP in rostral hippocampus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.08811 FLI1 ChEA Transcription Factor Targets 1.0 null TBP_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-4789-3p TargetScan Predicted Conserved microRNA Targets 1.0 0.37496 hsa-miR-3064-3p TargetScan Predicted Nonconserved microRNA Targets 1.0 0.843347 paraventricular nuclei, right of thalamus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.98314 H3K9ac_K562_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null pineal body Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.04514 preosteoblast TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.139039 medial habenular nucleus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.62923 female reproductive gland TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null TAF1_ECC-1_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null UBTF_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-4284 TargetScan Predicted Conserved microRNA Targets 1.0 0.274552 NCIH146 CCLE Cell Line Gene CNV Profiles -1.0 -1.36384 H3K4me3_fibroblast of lung_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null ETS1 ENCODE Transcription Factor Targets 1.0 null occipital pole, left, inferior aspect Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -2.06777 VZ in thalamic region Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.96895 PA-TU-8902 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.57779 NCOR1_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-4645-5p TargetScan Predicted Conserved microRNA Targets 1.0 1.26663 TBL1XR1 ENCODE Transcription Factor Targets 1.0 null thorax TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null POLR2A_K562_hg19_7 ENCODE Transcription Factor Binding Site Profiles 1.0 null HPAC Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.02814 paraventricular nuclei, left of thalamus, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.45089 cellular_component LOCATE Predicted Protein Localization Annotations 1.0 null EP300_GM12878_hg19_5 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-4443 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.40969 medial habenular nucleus, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.71073 E2F6 ENCODE Transcription Factor Targets 1.0 null CREBBP_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null nervous system TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null WM88 CCLE Cell Line Gene CNV Profiles 1.0 1.49184 COLO 699 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Mutation Profiles 1.0 null TEAD4_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null HCC4011 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.867979 TAL1_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null NCI-H146 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.0458 nervous system TISSUES Experimental Tissue Protein Expression Evidence Scores 1.0 1.0758 corpus callosum Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.7691 gonad TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null endocrine gland TISSUES Experimental Tissue Protein Expression Evidence Scores 1.0 0.23362 H3K79me2_H1-hESC_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null KCI-MOH1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.885763 hsa-miR-4435 TargetScan Predicted Conserved microRNA Targets 1.0 0.257113 Lupus Nephritis DisGeNET Gene-Disease Associations 1.0 null TK Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.59515 internal male genital organ TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null PMC7857731-elife-63093-supp5.xlsx-ECMdegs-MITF-X6_vs_EVSkMel28-Unnamed_36_MITF Rummagene Transcription Factor Associations 2026 1.0 null HDAC6 ENCODE Transcription Factor Targets 1.0 null animal TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null hsa-miR-4436a TargetScan Predicted Nonconserved microRNA Targets 1.0 1.55165 EGR1_ECC-1_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-4325 TargetScan Predicted Conserved microRNA Targets 1.0 0.219115 whole body TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.051547 hsa-miR-3187-3p TargetScan Predicted Conserved microRNA Targets 1.0 0.419947 NFIC JASPAR Predicted Transcription Factor Targets 1.0 null SK-BR-3 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.05326 CBX3_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null superior occipital gyrus, right, inferior bank of gyrus Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -3.04087 SP1 ENCODE Transcription Factor Targets 1.0 null EP300 ENCODE Transcription Factor Targets 1.0 null hsa-miR-3664-3p TargetScan Predicted Conserved microRNA Targets 1.0 0.419947 raphe obscurus nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.949658 TEAD4_ECC-1_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null brain TISSUES Experimental Tissue Protein Expression Evidence Scores 1.0 1.0758 paraventricular nucleus of the hypothalamus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.22805 MYC-20876797-MEDULLOBLASTOMA-HUMAN ChEA Transcription Factor Targets 2022 1.0 null MYC_MCF-7_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-3926 TargetScan Predicted Conserved microRNA Targets 1.0 1.11641 transient Purkinje cell clusters Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.5528 tissues, cell types and enzyme sources TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.05138 OAW28 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.990826 MOLM-16 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.07879 cellular_component COMPARTMENTS Text-mining Protein Localization Evidence Scores 1.0 0.040504 uterus TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null cervical carcinoma cell TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null SNU-C1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.16331 POLR2A_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null cell part COMPARTMENTS Text-mining Protein Localization Evidence Scores 1.0 0.040639 layer III of caudal entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.39076 CAL-120 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.968312 ZNF384 ENCODE Transcription Factor Targets 1.0 null HOXA5 JASPAR Predicted Transcription Factor Targets 1.0 null gigantocellular reticular nuclei Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.13837 hsa-miR-588 TargetScan Predicted Conserved microRNA Targets 1.0 0.257113 MEWO CCLE Cell Line Gene CNV Profiles 1.0 2.04493 limitans nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.28859 EBC-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.936734 spinal column TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.258243 HCC12 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.922322 HCC1187 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.01358 SRF JASPAR Predicted Transcription Factor Targets 1.0 null KYSE-140 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.87736 VIIIB, left, lateral hemisphere Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.16623 hsa-miR-4445 TargetScan Predicted Conserved microRNA Targets 1.0 0.187098 methyltransferase complex COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.663342 BEN Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.85709 MDA-MB-157 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.33925 head TISSUES Experimental Tissue Protein Expression Evidence Scores 1.0 1.0758 CTCF_HeLa-S3_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null THAP1 ENCODE Transcription Factor Targets 1.0 null organelle lumen COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.663342 POLR2A_K562_hg19_9 ENCODE Transcription Factor Binding Site Profiles 1.0 null viscus TISSUES Experimental Tissue Protein Expression Evidence Scores 1.0 0.766457 TBP ENCODE Transcription Factor Targets 1.0 null embryonic structure TISSUES Experimental Tissue Protein Expression Evidence Scores 1.0 0.766457 stratum radiatum of rostral CA1 Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.10667 H3K4me3_fibroblast of dermis_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null hsa-miR-1231 TargetScan Predicted Conserved microRNA Targets 1.0 0.293524 rostral ventral respiratory cell group Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.902215 POLR2A_MCF-7_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null GATA2 ChEA Transcription Factor Targets 1.0 null YMB-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.52933 central nuclear group Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.78272 hsa-miR-512-3p TargetScan Predicted Conserved microRNA Targets 1.0 1.45615 frontal pole, left, medial aspect Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.40632 MEC1 CCLE Cell Line Gene CNV Profiles 1.0 1.61897 RUNX1-21571218-MEGAKARYOCYTES-HUMAN ChEA Transcription Factor Binding Site Profiles 1.0 null tissues, cell types and enzyme sources TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null cingulate gyrus, frontal part, right, superior bank of gyrus Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.01086 YY1_ECC-1_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null IZ in inferolateral temporal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.830896 H3K36me3_T-cell acute lymphoblastic leukemia_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null osteogenic cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.229032 GATA2-21571218-MEGAKARYOCYTES-HUMAN ChEA Transcription Factor Binding Site Profiles 1.0 null TBL1XR1_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null VI, left, lateral hemisphere Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.984235 HEL CCLE Cell Line Gene CNV Profiles 1.0 1.70219 TAF1_MCF-7_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null TM31 CCLE Cell Line Gene CNV Profiles 1.0 1.60031 testis TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null hsa-miR-203 TargetScan Predicted Conserved microRNA Targets 1.0 0.303626 connective tissue TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.05573 H2AFZ_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null inferior occipital gyrus, right, superior bank of gyrus Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.85004 SNU626 CCLE Cell Line Gene CNV Profiles 1.0 1.48332 VIIB, right, lateral hemisphere Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.974757 EZH2_endothelial cell of umbilical vein_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null upper (rostral) rhombic lip Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.53143 POLR2A_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null KP4 CCLE Cell Line Gene CNV Profiles -1.0 -1.35783 H3K27ac_MCF-7_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null CHD2_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null animal TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.051546 MAZ ENCODE Transcription Factor Targets 1.0 null HEL Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.847314 tretinoin_homo sapiens_gpl6244_gds4180 GEO Signatures of Differentially Expressed Genes for Small Molecules 1.0 null KU812 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.893293 H3K36me3_H1-hESC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null H3K4me3_MCF-7_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null EZH2_B cell_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null temporal pole, left, medial aspect Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.898071 TMEM88_KD_GSE43805_682_human_hES cells differentiated along the cardiac lineage GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null parataenial nucleus of thalamus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.36046 NCI-H23 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.867979 MAX_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null VI Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.923462 osteoblast TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.284253 Esophageal Carcinoma DisGeNET Gene-Disease Associations 1.0 null hsa-miR-3152-5p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.0155 inner CP in orbital frontal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.833244 hsa-miR-513a-3p TargetScan Predicted Conserved microRNA Targets 1.0 0.181316 H3K4me3_LNCaP clone FGC_hg19_2 ENCODE Histone Modification Site Profiles 1.0 null MYC_K562_hg19_7 ENCODE Transcription Factor Binding Site Profiles 1.0 null H3K36me3_CD14-positive monocyte_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null YY1 ENCODE Transcription Factor Targets 1.0 null H2AFZ_osteoblast_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null HCC1954 CCLE Cell Line Gene CNV Profiles -1.0 -1.66011 NCI-H1435 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.826144 MAX_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null CHD1_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null JUND_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null fetus TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null whole body TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null GATA2-21571218-MEGAKARYOCYTES-HUMAN ChEA Transcription Factor Targets 2022 1.0 null HCC1937 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.18641 anterior orbital gyrus, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.890155 membrane-bounded organelle COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.663342 hsa-miR-2467-3p TargetScan Predicted Nonconserved microRNA Targets 1.0 0.843347 DMS 454 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.974716 IZ in posteroinferior (ventral) parietal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.22954 ETS1_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null frontal pole, right, superior aspect Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.6458 HCC2885 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.57779 KDM1A ENCODE Transcription Factor Targets 1.0 null NCIH23 CCLE Cell Line Gene CNV Profiles -1.0 -2.11359 catalytic complex COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.002499 urogenital system TISSUES Experimental Tissue Protein Expression Evidence Scores 1.0 0.23362 VIIAf Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.82108 stratum pyramidale of caudal CA2 Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.4427 PMC11474056-pnas.2404841121.sd01.xlsx-Supplemental_Table_8_Fig1G-H-Supplemental_Table_8_Transcriptomic_overlap_between_LPS_and_Sepsis_and_or_Tuberculosis_IRF6 Rummagene Transcription Factor Associations 2026 1.0 null TRIM28_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null VZ in ventrolateral prefrontal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.59255 OVCAR5 CCLE Cell Line Gene CNV Profiles -1.0 -1.37654 hsa-miR-4417 TargetScan Predicted Conserved microRNA Targets 1.0 0.085563 CALU-3 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.86689 B melanoma antigen InterPro Predicted Protein Domain Annotations 1.0 null intracellular organelle COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.663342 REST_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null superior parietal lobule, right, superior bank of gyrus Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.883304 central nervous system TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null CHD4_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null pineal gland Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.96831 organelle COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.663342 FOSL2 ENCODE Transcription Factor Targets 1.0 null KDM5A_H1-hESC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null NCIH2085 CCLE Cell Line Gene CNV Profiles -1.0 -1.42982 VIIIB Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.987267 H3K9me1_K562_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null CTCF_GM12878_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null holoprosencephaly DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.831099 placenta TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null YY1_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null TBL1XR1_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null MAFK ENCODE Transcription Factor Targets 1.0 null esophageal cancer cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 1.02513 hsa-miR-520h TargetScan Predicted Nonconserved microRNA Targets 1.0 1.99187 NCIH2110 CCLE Cell Line Gene CNV Profiles -1.0 -2.17808 hsa-miR-4667-5p TargetScan Predicted Conserved microRNA Targets 1.0 0.766596 female reproductive system TISSUES Experimental Tissue Protein Expression Evidence Scores 1.0 1.53602 MAX_MCF-7_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-4330 TargetScan Predicted Conserved microRNA Targets 1.0 0.598666 layer II of caudal entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.19738 protein complex COMPARTMENTS Text-mining Protein Localization Evidence Scores 1.0 0.041353 POLR2AphosphoS2_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null HCC70 COSMIC Cell Line Gene CNV Profiles -1.0 -3.61078 CP in temporal polar cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.836818 SUZ12_H1-hESC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null NCI-H920 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.74523 mammillary body, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.59811 H2AFZ_T-cell acute lymphoblastic leukemia_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null H3K4me3_K562_hg19_3 ENCODE Histone Modification Site Profiles 1.0 null hsa-miR-4439 TargetScan Predicted Conserved microRNA Targets 1.0 0.17031 IZ in dorsomedial parietal cortex (area 7m) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.835944 lateral orbital frontal cortex (area 12/47) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.868252 PLC/PRF/5 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.22823 EZH2_fibroblast of dermis_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null EZH2_mammary epithelial cell_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null ZNF384_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-660 TargetScan Predicted Conserved microRNA Targets 1.0 0.145356 H3K4me3_HeLa-S3_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null midline nuclear complex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.948801 integument TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.051656 hsa-miR-4436a TargetScan Predicted Conserved microRNA Targets 1.0 1.11641 CP in midlateral temporal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.31309 cell part COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.663342 HOP92 CCLE Cell Line Gene CNV Profiles -1.0 -1.42862 KYSE-30 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.16331 REST ENCODE Transcription Factor Targets 1.0 null ZR-75-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.53028 ELF1_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null NCI-H2196 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.909963 SNU216 CCLE Cell Line Gene CNV Profiles 1.0 2.59998 hsa-miR-4436b-5p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.07142 PMC6187090-mmc1.xlsx-TP53_positive-Symbol_TP53 Rummagene Transcription Factor Associations 2026 1.0 null PANC-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -2.12382 female reproductive system TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null membrane LOCATE Predicted Protein Localization Annotations 1.0 null trunk TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null hsa-miR-548c-3p TargetScan Predicted Conserved microRNA Targets 1.0 0.072324 hsa-miR-654-3p TargetScan Predicted Conserved microRNA Targets 1.0 0.193083 respiratory system TISSUES Experimental Tissue Protein Expression Evidence Scores 1.0 0.766457 MYC_MCF-7_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null PLC/PRF/5 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Mutation Profiles 1.0 null KYSE-410 COSMIC Cell Line Gene CNV Profiles -1.0 -3.61078 NCI-H1693 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.01358 transferase complex COMPARTMENTS Text-mining Protein Localization Evidence Scores 1.0 0.050578 catalytic complex COMPARTMENTS Text-mining Protein Localization Evidence Scores 1.0 0.04677 IZ in primary visual cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.10089 hsa-miR-510 TargetScan Predicted Conserved microRNA Targets 1.0 0.454769 POLR2A_K562_hg19_5 ENCODE Transcription Factor Binding Site Profiles 1.0 null 59M Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.974689 hsa-miR-661 TargetScan Predicted Conserved microRNA Targets 1.0 1.11641 hsa-miR-382 TargetScan Predicted Conserved microRNA Targets 1.0 0.37496 NCI-H1770 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.891913 H3K4me3_K562_hg19_2 ENCODE Histone Modification Site Profiles 1.0 null skeletal system TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.06201 SOX2-21211035-LN229_GBM-HUMAN ChEA Transcription Factor Binding Site Profiles 1.0 null gland TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null MYC_K562_hg19_5 ENCODE Transcription Factor Binding Site Profiles 1.0 null superior rostral gyrus, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.18577 MAX_MCF-7_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null lumbar spine TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.649344 UBTF ENCODE Transcription Factor Targets 1.0 null hsa-miR-3941 TargetScan Predicted Conserved microRNA Targets 1.0 0.632343 H3K27me3_CD14-positive monocyte_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null ZMIZ1_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null POLR2A_ECC-1_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null PMC3879300-pone.0084292.s002.xlsx-SPD_dataset-Gene_symbol_HOXD13 Rummagene Transcription Factor Associations 2026 1.0 null CCNT2 ENCODE Transcription Factor Targets 1.0 null UBTF_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null esophageal epithelium TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.17272 hsa-miR-3190 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.809003 MAX_ECC-1_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null temporal pole, right, inferior aspect Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.08481 SP in caudal hippocampal proper Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.50855 cell type cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.04417 H2AFZ ENCODE Transcription Factor Targets 1.0 null POLR2A_MCF-7_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null HEP G2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.69207 hsa-miR-3180-5p TargetScan Predicted Conserved microRNA Targets 1.0 0.187098 PHF8 ENCODE Transcription Factor Targets 1.0 null I-II Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.70522 CTCF_fibroblast of dermis_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null globus pallidus, internal segment, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.943398 hsa-miR-4700-5p TargetScan Predicted Conserved microRNA Targets 1.0 0.670641 H3K4me3_astrocyte_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null posterior cortical nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 2.41222 CHD4 ENCODE Transcription Factor Targets 1.0 null TAF1 ENCODE Transcription Factor Targets 1.0 null JEKO-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.826144 nucleoplasm part COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.663342 DAN-G Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.0458 CHD7_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null cochlear nuclei, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.2569 E2F6_K562_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null ventricular (matrix) zone of pons Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.19911 ZC3H11A_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null JUN_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null lateral orbital gyrus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.835539 HCC630 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.18541 brain TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null macromolecular complex COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.663342 lateral reticular nucleus (principal part) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.921729 ELF1_GM12878_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null uterine cervix TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null PL45 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.59226 COR-L279 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.993959 GTF2F1_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null KDM5B ENCODE Transcription Factor Targets 1.0 null PML_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-579 TargetScan Predicted Conserved microRNA Targets 1.0 0.766596 leukemia DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.226262 YY1_K562_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null posterior hypothalamic area, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.08347 disease of cellular proliferation DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.284013 H3K9me3_fibroblast of lung_hg19_2 ENCODE Histone Modification Site Profiles 1.0 null ZR751 CCLE Cell Line Gene CNV Profiles -1.0 -1.59447 thymus TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null paraventricular nucleus of hypothalamus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.34249 extracellular region GO Cellular Component Annotations 2015 1.0 null HCC1806 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -2.58357 central gray of the pons, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.09406 cuneate nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.990227 EGR1_MCF-7_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null SPI1_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null H3K27ac_K562_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null SK-MEL-31 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.993959 PMC3348545-NIHMS263168-supplement-3.pdf-15-ZGPAT_ZGPAT Rummagene Transcription Factor Associations 2026 1.0 null HMGN3 ENCODE Transcription Factor Targets 1.0 null KAT2B_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null EGR1_ECC-1_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null JUN ENCODE Transcription Factor Targets 1.0 null temporal pole, right, medial aspect Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.32143 hsa-miR-4251 TargetScan Predicted Conserved microRNA Targets 1.0 0.283838 NCI-H1651 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.0458 internal female genital organ TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null lateral tuberal nuclei Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.893689 H3K4me3_osteoblast_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null bone TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.062702 HCC95 CCLE Cell Line Gene CNV Profiles 1.0 3.2803 HCFC1_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null intracellular part COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.663342 ZMIZ1 ENCODE Transcription Factor Targets 1.0 null macromolecular complex COMPARTMENTS Text-mining Protein Localization Evidence Scores 1.0 0.04115 H3K9me3_fibroblast of lung_hg19_3 ENCODE Histone Modification Site Profiles 1.0 null plasma membrane LOCATE Predicted Protein Localization Annotations 1.0 null HCC1954 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.05326 HDAC2 ENCODE Transcription Factor Targets 1.0 null central gray of the pons, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.77696 NCI-H2804 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.16331 TCF12_ECC-1_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null endocrine gland TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null hsa-miR-3145-5p TargetScan Predicted Conserved microRNA Targets 1.0 0.32519 hsa-miR-628-5p TargetScan Predicted Conserved microRNA Targets 1.0 0.517189 hsa-miR-648 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.7397 EKVX Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.99176 SIRT6 ENCODE Transcription Factor Targets 1.0 null IRF1 ENCODE Transcription Factor Targets 1.0 null HCC-15 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.16331 BXPC-3 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.05646 H2AFZ_fibroblast of dermis_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null reproductive system TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null CP in caudal subicular cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.18625 superior frontal gyrus, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.44599 hsa-miR-4742-5p TargetScan Predicted Conserved microRNA Targets 1.0 0.404082 carcinoma DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.062739 SNU-216 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 3.19301 hsa-miR-665 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.843347 PML_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Squamous Cell Carcinoma Of Mouth DisGeNET Gene-Disease Associations 1.0 null MAFK_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CEBPB ENCODE Transcription Factor Targets 1.0 null intracellular part COMPARTMENTS Text-mining Protein Localization Evidence Scores 1.0 0.0409 hsa-miR-4709-3p TargetScan Predicted Conserved microRNA Targets 1.0 0.226173 hsa-miR-548n TargetScan Predicted Conserved microRNA Targets 1.0 0.419947 POLR2AphosphoS5_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-4282 TargetScan Predicted Conserved microRNA Targets 1.0 0.123298 cellular_component COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.663342 lymphoid tissue TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null EZH2_H1-hESC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null nucleus COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.663342 organism form TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null cingulum bundle, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.886996 HT-29 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.3707 NCI-H847 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.35374 MAX_K562_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null HCA-7 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.30079 hsa-miR-942 TargetScan Predicted Conserved microRNA Targets 1.0 0.241055 HS 294T Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.01358 hsa-miR-4799-3p TargetScan Predicted Conserved microRNA Targets 1.0 0.37496 H3K4me3_K562_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null hsa-miR-33b TargetScan Predicted Conserved microRNA Targets 1.0 0.15008 POLR2A_ECC-1_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null MZ in primary visual cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 2.09353 ventricular (matrix) zone of cerebellum Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.875152 cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.289027 histone methyltransferase complex COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.663342 SP in caudal perirhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.988843 KYSE410 CCLE Cell Line Gene CNV Profiles -1.0 -1.59506 hsa-miR-22 TargetScan Predicted Conserved microRNA Targets 1.0 0.348832 hsa-miR-4473 TargetScan Predicted Conserved microRNA Targets 1.0 0.389112 hsa-miR-570 TargetScan Predicted Conserved microRNA Targets 1.0 0.389112 eGFP-JUNB_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null POLR2A_MCF-7_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null SPI1_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null POLR2A ENCODE Transcription Factor Targets 1.0 null RCC4 CCLE Cell Line Gene CNV Profiles 1.0 1.41908 hsa-miR-4720-5p TargetScan Predicted Conserved microRNA Targets 1.0 0.361556 solitary nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.15845 hsa-miR-3150a-3p TargetScan Predicted Nonconserved microRNA Targets 1.0 0.921135 superficial layers of caudal presubiculum Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.844786 JUN_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null H3K4me3_MCF-7_hg19_2 ENCODE Histone Modification Site Profiles 1.0 null internal female genital organ TISSUES Experimental Tissue Protein Expression Evidence Scores 1.0 0.766457 SG in temporal polar cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 2.40382 EZH2_T-cell acute lymphoblastic leukemia_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null TAF7_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null JHH-7 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.59515 EVSA-T Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.936734 HCC70 CCLE Cell Line Gene CNV Profiles -1.0 -1.76964 KYO1 CCLE Cell Line Gene CNV Profiles 1.0 2.02687 BHLHE40_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null EZH2 ENCODE Transcription Factor Targets 1.0 null hsa-miR-1208 TargetScan Predicted Conserved microRNA Targets 1.0 0.107229 organism form TISSUES Experimental Tissue Protein Expression Evidence Scores 1.0 0.766457 disease DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.171535 NFYB ENCODE Transcription Factor Targets 1.0 null EP300_H1-hESC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null caudal group of intralaminar nuclei, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.913771 VZ in dorsomedial extrastriate cortex (V2) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.993396 BT-549 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.47097 NFIC_ECC-1_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null RBBP5_H1-hESC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-3650 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.40969 POU2F2_GM12878_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null RCOR1_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-637 TargetScan Predicted Conserved microRNA Targets 1.0 0.111118 lateral intermediate part of entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.05219 POLR2A_K562_hg19_6 ENCODE Transcription Factor Binding Site Profiles 1.0 null NFYA ENCODE Transcription Factor Targets 1.0 null H2AFZ_mammary epithelial cell_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null KYSE-450 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.35374 hsa-miR-4448 TargetScan Predicted Conserved microRNA Targets 1.0 0.828473 H2AFZ_B cell_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null KCIMOH1 CCLE Cell Line Gene CNV Profiles -1.0 -1.57114 whole body TISSUES Experimental Tissue Protein Expression Evidence Scores 1.0 0.766457 mammillary body, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.46152 CHD7 ENCODE Transcription Factor Targets 1.0 null hsa-miR-4269 TargetScan Predicted Conserved microRNA Targets 1.0 0.670641 H2AFZ_GM12878_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null KP-3 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.86689 PHF8_H1-hESC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null ATF1 ENCODE Transcription Factor Targets 1.0 null TE9 CCLE Cell Line Gene CNV Profiles -1.0 -1.35909 hsa-miR-4309 TargetScan Predicted Conserved microRNA Targets 1.0 0.165047 PML ENCODE Transcription Factor Targets 1.0 null NCIH1650 CCLE Cell Line Gene CNV Profiles -1.0 -1.60287 MYC ENCODE Transcription Factor Targets 1.0 null VZ in superolateral temporal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.902548 DMS 79 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.07879 VZ in caudal midinferior temporal cortex (area TF) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.835562 H3K27me3_HepG2_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null SF539 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.990826 BHLHE40 ENCODE Transcription Factor Targets 1.0 null animal TISSUES Experimental Tissue Protein Expression Evidence Scores 1.0 1.53602 786-O Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.827438 H4K20me1_keratinocyte_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null SUZ12 ENCODE Transcription Factor Targets 1.0 null hsa-miR-3128 TargetScan Predicted Conserved microRNA Targets 1.0 0.336728 H3K9me1_endothelial cell of umbilical vein_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null TAL1 ENCODE Transcription Factor Targets 1.0 null RUNX1 ChEA Transcription Factor Targets 1.0 null H3K4me2_HeLa-S3_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null caudal division of IPC (area 39) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.98975 JHOS4 CCLE Cell Line Gene CNV Profiles 1.0 2.22488 SAP30_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null III, right, paravermis Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 3.26578 CBX3 ENCODE Transcription Factor Targets 1.0 null CTCF_CD14-positive monocyte_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null HS 69ST Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.974689 PMC5358377-pnas.1615015114.sd02.xlsx-Sheet1-Genes_with_VDR_elements_only_control_VDR Rummagene Transcription Factor Associations 2026 1.0 null VZ in caudal subicular cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.25454 hsa-miR-4437 TargetScan Predicted Conserved microRNA Targets 1.0 0.598666 embryonic structure TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null CBX3_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null cellular_component GO Cellular Component Annotations 2015 1.0 null intercalated nucleus of medulla Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.68693 KDM4A ENCODE Transcription Factor Targets 1.0 null MYC_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null TCF12 ENCODE Transcription Factor Targets 1.0 null EZH2_HepG2_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null SG in lateral temporal-occipital cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.21832 hsa-miR-3136-5p TargetScan Predicted Conserved microRNA Targets 1.0 0.226173 H3K4me3_H1-hESC_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null CHD1 ENCODE Transcription Factor Targets 1.0 null NFYB_GM12878_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null frontal pole, right, inferior aspect Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -2.28786 SIRT6_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null JUND ENCODE Transcription Factor Targets 1.0 null hsa-miR-668 TargetScan Predicted Conserved microRNA Targets 1.0 0.293524 SIN3A_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null congenital nervous system abnormality DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.46466 STAT5A ENCODE Transcription Factor Targets 1.0 null organelle part COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.663342 hsa-miR-3144-5p TargetScan Predicted Conserved microRNA Targets 1.0 0.90397 Edinger-Westphal nucleus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.61318 H2AFZ_fibroblast of lung_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null NFIC ENCODE Transcription Factor Targets 1.0 null TCF12_ECC-1_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-3118 TargetScan Predicted Conserved microRNA Targets 1.0 0.419947 H2AFZ_CD14-positive monocyte_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null GABPA ENCODE Transcription Factor Targets 1.0 null POLR2A_K562_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null HDAC6_H1-hESC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null cuneiform nucleus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.60363 CTCF_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-1245b-3p TargetScan Predicted Nonconserved microRNA Targets 1.0 0.965816 KMS-26 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.826144 NCIH2106 CCLE Cell Line Gene CNV Profiles 1.0 1.39619 STAT5A_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null U2OS CCLE Cell Line Gene CNV Profiles -1.0 -1.35709 stratum pyramidale of rostral CA3 Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.16465 YY1_K562_hg19_5 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-520g TargetScan Predicted Nonconserved microRNA Targets 1.0 1.99187 RUNX1-21571218-MEGAKARYOCYTES-HUMAN ChEA Transcription Factor Targets 2022 1.0 null KHM-1B Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.14073 NCI-H2198 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.16331 HCC1806 COSMIC Cell Line Gene CNV Profiles -1.0 -3.61078 PMC3419980-leu201249x2.xls-RUNX1-ETO_siRE_ChIPSeq_peaks_ge-gene_name_RUNX1 Rummagene Transcription Factor Associations 2026 1.0 null H3K4me1_K562_hg19_2 ENCODE Histone Modification Site Profiles 1.0 null squamous cell carcinoma DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.398216 SP1_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null MYC_MCF-7_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null caudal (posterior) extramural migratory stream Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.870817 HDAC2_H1-hESC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null HDAC2_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null KDM5B_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null MAX ENCODE Transcription Factor Targets 1.0 null CHD2 ENCODE Transcription Factor Targets 1.0 null MZ in dorsomedial extrastriate cortex (V2) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.09041 pedunculo(pontine) tegmental nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 2.10767 MS751 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.827438 T3M4 CCLE Cell Line Gene CNV Profiles -1.0 -1.51191 OCUM-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.2333 TEAD4_ECC-1_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null COV413B Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.826144 DB Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.3723 lower limb region of M1 Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.929441 MYC_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null NCOR1 ENCODE Transcription Factor Targets 1.0 null intracellular COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.663342 KDM4A_H1-hESC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null paracentral lobule, anterior part, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.01999 molecular layer of rostral subiculum Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.923305 POLR2A_K562_hg19_8 ENCODE Transcription Factor Binding Site Profiles 1.0 null intracellular organelle part COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.663342 immune system cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.043248 ventromedial hypothalamic nucleus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.4181 TAF7 ENCODE Transcription Factor Targets 1.0 null E2F6_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null PHF8_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null SOX2 ChEA Transcription Factor Targets 1.0 null hsa-miR-1237 TargetScan Predicted Conserved microRNA Targets 1.0 0.997906 TEAD4_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null ATF1_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null male reproductive gland TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null NCI-H2110 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -3.3636 TAF1_ECC-1_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-4645-5p TargetScan Predicted Nonconserved microRNA Targets 1.0 0.880544 YY1_SK-N-SH_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-4798-5p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.99187 paracentral lobule, posterior part, left, bank of cingulate sulcus Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.03144 SNU-668 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.8012 hsa-miR-541 TargetScan Predicted Conserved microRNA Targets 1.0 0.37496 KYSE520 CCLE Cell Line Gene CNV Profiles -1.0 -1.4932 hsa-miR-4530 TargetScan Predicted Conserved microRNA Targets 1.0 0.90397 dorsal motor nucleus of the vagus (vagal nucleus) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.48906 CEBPD_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null ETS1_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null esophageal squamous cell carcinoma cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 1.13723 frontal pole, right, medial aspect Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.23404 HCC202 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.974716 hsa-miR-4674 TargetScan Predicted Conserved microRNA Targets 1.0 0.219115 spinal trigeminal nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.02521 MAX_ECC-1_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null NCI-H2106 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 2.34898 hsa-miR-4659a-3p TargetScan Predicted Conserved microRNA Targets 1.0 0.248923 hsa-miR-508-5p TargetScan Predicted Conserved microRNA Targets 1.0 0.107229 III, left, lateral hemisphere Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.36665 hsa-miR-664 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.0155 KAT2B ENCODE Transcription Factor Targets 1.0 null COLO 201 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.11558 hsa-miR-4317 TargetScan Predicted Conserved microRNA Targets 1.0 0.49473 VIIB, left, lateral hemisphere Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.840524 TRIM28 ENCODE Transcription Factor Targets 1.0 null nuclear lumen COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.663342 organ system cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.039398 urogenital system TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null TAF1_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null MYC ChEA Transcription Factor Targets 1.0 null VZ in caudal entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.98056 POLR2A_K562_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null REST_Panc1_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-3647-3p TargetScan Predicted Conserved microRNA Targets 1.0 0.181316 periosteum TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.225647 intracellular organelle lumen COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.663342 eGFP-JUND_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null E2F6_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null H3K9ac_K562_hg19_2 ENCODE Histone Modification Site Profiles 1.0 null GABPA_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-4701-5p TargetScan Predicted Conserved microRNA Targets 1.0 0.257113 EGR1-20690147-ERYTHROLEUKEMIA-HUMAN ChEA Transcription Factor Targets 2022 1.0 null H3K4me1_K562_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null YY1_K562_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null anterodorsal nucleus of thalamus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.939288 KDM5A ENCODE Transcription Factor Targets 1.0 null SF268 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.893293 MZ in dorsomedial frontal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.35744 facial nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.36284 HMGN3_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null VIIIA, left, lateral hemisphere Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.935573 TEAD4_MCF-7_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null POLR2A_H54_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-548s TargetScan Predicted Conserved microRNA Targets 1.0 1.45615 CTCF_T-cell acute lymphoblastic leukemia_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null X, left, paravermis Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.841996 TMEM88B_KD_GPL10558_471_human_cardiovascular progenitors cells differentiated from hES cells GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null H3K4me2_K562_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null MORCPR CCLE Cell Line Gene CNV Profiles 1.0 1.44159 OVTOKO Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.909963 NFYB_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null principal sensory nucleus of trigeminal nerve Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.2826 SOX2-21211035-LN229-GBM ChEA Transcription Factor Targets 2022 1.0 null EZH2_keratinocyte_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null esophagus TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.161554 H3K4me3_HepG2_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null PMC4026482-pone.0097702.s010.xlsx-LPS_1_8FC_12hour-Symbol_IRF6 Rummagene Transcription Factor Associations 2026 1.0 null SNU886 CCLE Cell Line Gene CNV Profiles 1.0 2.30547 COLO668 CCLE Cell Line Gene CNV Profiles 1.0 1.56171 SHP77 CCLE Cell Line Gene CNV Profiles -1.0 -2.02282 head TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null hsa-miR-507 TargetScan Predicted Conserved microRNA Targets 1.0 0.49473 MESSA CCLE Cell Line Gene CNV Profiles 1.0 1.71677 NFYA JASPAR Predicted Transcription Factor Targets 1.0 null H3K9ac_HeLa-S3_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null hsa-miR-3198 TargetScan Predicted Conserved microRNA Targets 1.0 0.154935 CREBBP ENCODE Transcription Factor Targets 1.0 null methyltransferase complex COMPARTMENTS Text-mining Protein Localization Evidence Scores 1.0 1.10154 IZ in medial temporal-occipital cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.44927 MAZ_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null inferior occipital gyrus, right, inferior bank of gyrus Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.48039 HEL9217 CCLE Cell Line Gene CNV Profiles 1.0 1.95787 hsa-miR-491-5p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.07142 hsa-miR-3928 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.921135 COLO 320DM Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.32992 H2AFZ_myotube_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null alimentary canal TISSUES Experimental Tissue Protein Expression Evidence Scores 1.0 0.766457 membrane-enclosed lumen COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.663342 FLI1-21571218-MEGAKARYOCYTES-HUMAN ChEA Transcription Factor Binding Site Profiles 1.0 null female reproductive gland TISSUES Experimental Tissue Protein Expression Evidence Scores 1.0 0.766457 tissues, cell types and enzyme sources TISSUES Experimental Tissue Protein Expression Evidence Scores 1.0 1.53602 SW1271 COSMIC Cell Line Gene CNV Profiles -1.0 -3.61078 OVCA 432 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.867979 hsa-miR-4277 TargetScan Predicted Conserved microRNA Targets 1.0 0.336728 EGR1 ChEA Transcription Factor Targets 1.0 null HCFC1 ENCODE Transcription Factor Targets 1.0 null POLR2AphosphoS5_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null PANC1 CCLE Cell Line Gene CNV Profiles -1.0 -2.298 KLM-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.56223 IRF1_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null NCIH1793 CCLE Cell Line Gene CNV Profiles -1.0 -1.77544 Lupus Erythematosus DisGeNET Gene-Disease Associations 1.0 null EP300_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null SETDB1_K562_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null GTF2F1 ENCODE Transcription Factor Targets 1.0 null NCI-H2081 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.27696 viscus TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.054653 MYC_K562_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null TALL1 CCLE Cell Line Gene CNV Profiles 1.0 1.59671 SAP30 ENCODE Transcription Factor Targets 1.0 null VMRCLCP CCLE Cell Line Gene CNV Profiles -1.0 -2.57983 fetus TISSUES Experimental Tissue Protein Expression Evidence Scores 1.0 0.766457 SNU-387 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.57779 FOXC1 JASPAR Predicted Transcription Factor Targets 1.0 null gland TISSUES Experimental Tissue Protein Expression Evidence Scores 1.0 0.23362 EGR1 ENCODE Transcription Factor Targets 1.0 null CTCF ENCODE Transcription Factor Targets 1.0 null H3K4me3_T-cell acute lymphoblastic leukemia_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null hsa-miR-3191 TargetScan Predicted Conserved microRNA Targets 1.0 0.205675 TAF1_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null FOXO1-32281255-CHONDROCYTES-HUMAN-OSTEOARTHRITIS ChEA Transcription Factor Targets 2022 1.0 null hsa-miR-33a TargetScan Predicted Conserved microRNA Targets 1.0 0.15008 JHH-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.879493 G111 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.59318 928 MEL Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.85909 SK-MES-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.867979 hsa-miR-4659b-3p TargetScan Predicted Conserved microRNA Targets 1.0 0.248923 MDA-MB-330 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.0458 hsa-miR-520f TargetScan Predicted Conserved microRNA Targets 1.0 0.23348 IRF1_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null inferior frontal gyrus, orbital part, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.829627 IX, right, paravermis Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.955341 NFYA_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null cochlear nuclei Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.3385 OKAJIMA Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.973558 superior rostral gyrus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.26053 abducens nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.1856 RMUG-S Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.826144 SG in caudal perirhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.31871 SG in midlateral extrastriate cortex (area 19) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.89214 FLI1-21571218-MEGAKARYOCYTES-HUMAN ChEA Transcription Factor Targets 2022 1.0 null PMC8202205-NIHMS1706275-supplement-Table_S1.xlsx-Def_End_D4_GATA6-dependent-SYMBOL_GATA6 Rummagene Transcription Factor Associations 2026 1.0 null JHH-5 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.05326 CCNT2_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null FOS ENCODE Transcription Factor Targets 1.0 null HCC2279 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.23177 central nervous system TISSUES Experimental Tissue Protein Expression Evidence Scores 1.0 1.0758 MZ in temporal polar cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.856613 olfactory bulb Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.900763 HPAC CCLE Cell Line Gene CNV Profiles -1.0 -1.76903 CEBPD ENCODE Transcription Factor Targets 1.0 null medial portion of STH Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.66727 physical disorder DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.104858 HCC1143 CCLE Cell Line Gene CNV Profiles 1.0 1.67733 NCIH1734 CCLE Cell Line Gene CNV Profiles -1.0 -1.47708 PMC7397849-supp_gad.338681.120_Supplemental_Table_S3.xlsx-S3M_Peaks_YAP1MAMLD1_TEAD4-Unnamed_11_TEAD4 Rummagene Transcription Factor Associations 2026 1.0 null MXI1_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-629 TargetScan Predicted Conserved microRNA Targets 1.0 0.714812 hsa-miR-3115 TargetScan Predicted Conserved microRNA Targets 1.0 0.714812 EGR1-20690147-ERYTHROLEUKEMIA-HUMAN ChEA Transcription Factor Binding Site Profiles 1.0 null subcuneiform nucleus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.03142 cell COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.663342 arcuate nucleus of the hypothalamus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.979595 reproductive system TISSUES Experimental Tissue Protein Expression Evidence Scores 1.0 0.23362 OVCA 420 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Mutation Profiles 1.0 null THAP1_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null MDA-MB-361 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.65646 tail of caudate nucleus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.899238 III, left, paravermis Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.960632 CAPAN1 CCLE Cell Line Gene CNV Profiles -1.0 -1.92213 HCC1806 CCLE Cell Line Gene CNV Profiles -1.0 -3.21049 ZC3H11A ENCODE Transcription Factor Targets 1.0 null C32TG Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.25615 cell part LOCATE Predicted Protein Localization Annotations 1.0 null spinal (inferior) vestibular nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.28568 male reproductive system TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null SNU-475 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.13924 HCC4017 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -2.05628 Edinger-Westphal nucleus (accessory oculomotor nucleus) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.98556 ELF1 ENCODE Transcription Factor Targets 1.0 null TEAD4 ENCODE Transcription Factor Targets 1.0 null medioventral part of putamen Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.6581 hsa-miR-557 TargetScan Predicted Conserved microRNA Targets 1.0 0.454769 epithelium TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.052336 eGFP-HDAC8_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null MYC_K562_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null U-2 OS Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.20816 hsa-miR-4652-5p TargetScan Predicted Conserved microRNA Targets 1.0 0.17031 protein complex COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.663342 rostral subdivision of paraventricular nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.69222 GTF2B ENCODE Transcription Factor Targets 1.0 null RCOR1 ENCODE Transcription Factor Targets 1.0 null layer VI of caudal entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.3455 basal ventral medial nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -2.30955 outer CP in rostral cingulate cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.982681 PL-21 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.42422 KDM5B_H1-hESC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null HCC70 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.26475 transferase complex COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.00305 NIH:OVCAR-3 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.993959 GTL-16 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.47684 nucleoplasm COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.663342 POU2F2 ENCODE Transcription Factor Targets 1.0 null Malignant Neoplasm DisGeNET Gene-Disease Associations 1.0 null corpus callosum Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.16883 H3K4me3_K562_hg19_4 ENCODE Histone Modification Site Profiles 1.0 null GTF2B_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null FOS_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null SPI1 ENCODE Transcription Factor Targets 1.0 null occipital pole, left, superior aspect Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.64461