association	dataset	threshold value	standardized value
Cilium	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
H3K27me3_cardiac mesoderm_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
OSC20	DepMap CRISPR Gene Dependency	1.0	3.33895
Immune system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.078
NR1H4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.18831
cellular_component	LOCATE Predicted Protein Localization Annotations	1.0	null
Breast	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.078
inferolateral temporal cortex (area TEv, area 20)_21 pcw_F_12365	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.78232
posteroventral (inferior) parietal cortex_23 yrs_M_12300	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.15064
FIZZ2_KO_GDS4902_408_mouse_Lung	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
Sarcoma_SARC_TCGA-SG-A6Z4-01A-22R-A33J-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-DU-A5TU-01A-11R-A28M-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Pharynx	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.437
PDX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.303
ATP5F1D	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.02017
RAD21_H1-hESC_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
FOXO1-23066095-LIVER-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
GSE216043_11_v_5_cisplatin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
FOSB::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.212
GSE214931_4_v_0_temozolomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
HUP-T4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0388
abnormality of transition element cation homeostasis	GWASdb SNP-Phenotype Associations	1.0	0.218783
MAFK_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Tobacco Use Disorder	HuGE Navigator Gene-Phenotype Associations	1.0	null
Kidney renal papillary cell carcinoma_KIRP_TCGA-A4-7915-01A-11R-2204-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Adrenocortical carcinoma_ACC_TCGA-OR-A5LD-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PLEKHA3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.05386
Skin	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.078
NFATC4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.9858
POLR2A_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-37-5819-01A-01R-1635-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RB1CC1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.34202
dorsolateral prefrontal cortex_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.67718
Brain Lower Grade Glioma_LGG_TCGA-VW-A7QS-01A-12R-A33Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE214931_3_v_0_temozolomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Uterus	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.078
THP1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.47813
Colorectum	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.437
HINFP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.44602
posterior (caudal) superior temporal cortex (area 22c)_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.14829
Prostate adenocarcinoma_PRAD_TCGA-EJ-7797-11A-01R-2263-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-CU-A3KJ-01A-11R-A21D-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC6420765-12864_2019_5550_MOESM4_ESM.xlsx-R_D4_vs_D9-gene_id_x_CENPX	Rummagene Transcription Factor Associations 2026	1.0	null
pancreas	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	1.19221
Central nervous system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
posteroventral (inferior) parietal cortex_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.855162
Skin Cutaneous Melanoma_SKCM_TCGA-D9-A4Z2-01A-11R-A24X-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
H3K27me3_Mobilized CD34 Primary Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-GS-A9TV-01A-11R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
posterior (caudal) superior temporal cortex (area 22c)_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.44581
Pancreatic adenocarcinoma_PAAD_TCGA-HV-A7OL-01A-11R-A33R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hsa-miR-520d-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
MEF2D	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.4559
GSE125011_0_v_2_cd83_human	RummaGEO Gene Perturbation Signatures	-1.0	null
dorsolateral prefrontal cortex_21 pcw_F_12365	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.14335
MDAMB436	CCLE Cell Line Gene Expression Profiles	-1.0	-3.02937
Alx4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	37.6307
Lhx8	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	23.9513
Lung adenocarcinoma_LUAD_TCGA-50-5044-01A-21R-1858-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
VAX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.9305
bonemarrow	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	1.27307
Bladder Urothelial Carcinoma_BLCA_TCGA-H4-A2HO-01A-11R-A180-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
FOSL2::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.3778
MMP16	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.29635
WM-115	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.61845
Lung adenocarcinoma_LUAD_TCGA-44-7661-01A-11R-2066-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
POU3F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	67.886
SPOP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.48651
PPP1R12A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.69088
PTPN1_KD_GSE54157_673_human_KM-H2	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-D3-A2J6-06A-11R-A18T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Pancreatic adenocarcinoma_PAAD_TCGA-3E-AAAY-01A-11R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE140997_10_v_1_nsun6_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Trunk	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.078
HCC2998	DepMap CRISPR Gene Dependency	1.0	15.9869
MAX_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Sarcoma_SARC_TCGA-DX-A8BH-01A-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CCDC9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.23229
GSE175787_5_v_6_rhoc_human	RummaGEO Gene Perturbation Signatures	1.0	null
EVX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	55.7278
C18orf21	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.0916
H3K4me1_iPS DF 6.9	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
GTF2F1_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
496100628_FWM_dementia_TBI_77_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.10005
KMS21BM	CCLE Cell Line Gene Expression Profiles	1.0	1.63138
NR2F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.8326
Brain Lower Grade Glioma_LGG_TCGA-VM-A8CB-01A-11R-A36H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
AP2M1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.08384
ETS2	MotifMap Predicted Transcription Factor Targets	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A29G-06A-12R-A18T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0892
Sperm flagellum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.473
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-GR-7353-01A-11R-2213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SNAPC2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.42854
RORA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.6156
MAX_H1-hESC_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GSE127790_10_v_3_zcchc8_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
OlfactoryBulb	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	0.885306
lung	HPA Tissue Protein Expression Profiles	-1.0	-0.733063
GSE240386,GSE242143_1_v_6_morc2_human	RummaGEO Gene Perturbation Signatures	1.0	null
NUDT9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.13034
SMC3	ENCODE Transcription Factor Targets	1.0	null
KNS81	DepMap CRISPR Gene Dependency	1.0	2.38589
COX17	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.33278
Sox7	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.645
primary somatosensory cortex (area S1, areas 3,1,2)_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.925395
PSMD7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.4534
HOXD10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.0067
KNS-62	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.968074
PK-45H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11789
TCF7L1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.7891
Alimentary canal	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.437
ETS1	ENCODE Transcription Factor Targets	1.0	null
KARPAS299	CCLE Cell Line Gene CNV Profiles	-1.0	-1.48072
MAX_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GSE139966_4_v_0_figla_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GATA2	ChEA Transcription Factor Targets	1.0	null
PMC12186250-NIHMS2085662-supplement-3.xlsx-4111_TEAD4_peaks-Nearest_Ensembl_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
GSE205976,GSE205978_2_v_4_cep83_human	RummaGEO Gene Perturbation Signatures	-1.0	null
REST	ChEA Transcription Factor Targets	1.0	null
Smooth muscle	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.078
orbital frontal cortex_16 pcw_M_12837	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.950653
YMB-1-E	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.988453
CI1	CCLE Cell Line Gene Expression Profiles	1.0	1.4577
ZNF80	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.04242
CTCF	ENCODE Transcription Factor Targets	1.0	null
SHOX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.4746
YAPC	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.14603
PSMC4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.61534
skin	HPA Tissue Protein Expression Profiles	-1.0	-0.969682
Dlx2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	16.7519
CRX	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.29535
RPS28	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.17592
mRNA_SOX2_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
hsa-miR-4516	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
GSE198165,GSE198166_5_v_2_zfp266_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
CFPAC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.14603
Pheochromocytoma and Paraganglioma_PCPG_TCGA-RW-A689-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NKX6-3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.0674
SNU668	CCLE Cell Line Gene CNV Profiles	1.0	2.2728
abnormality of the mouth	GWASdb SNP-Phenotype Associations	1.0	0.128728
H3K4me3_H1-hESC_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me3_H7_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
HCC4017	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.98384
Brain Lower Grade Glioma_LGG_TCGA-P5-A5F1-01A-11R-A28M-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SW 1573	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0388
PRRX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.7317
NCI-H322T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.39069
abnormality of iron homeostasis	GWASdb SNP-Phenotype Associations	1.0	0.430267
HCT116	CCLE Cell Line Gene CNV Profiles	1.0	1.63507
TSACC	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.2851
A-Vietnam-1203_CIP048_RG4-2004(H5N1)NS1trunc124_4day-MOI-10^3_None_GSE44445	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	2.21176
GSE205976,GSE205978_3_v_0_cep83_human	RummaGEO Gene Perturbation Signatures	1.0	null
496100536_HIP_no dementia_no TBI_87_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.23452
bone marrow	HPA Tissue Protein Expression Profiles	-1.0	-0.733063
ALYREF	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.30908
PANC0213	CCLE Cell Line Gene Expression Profiles	-1.0	-2.13334
Arid3a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	30.3704
CTCF_GM12869_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-DB-A64U-01A-11R-A29R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Pancreatic adenocarcinoma_PAAD_TCGA-IB-7649-01A-11R-2156-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HCC70	DepMap CRISPR Gene Dependency	1.0	2.2036
salivary gland	GTEx Tissue Gene Expression Profiles	-1.0	-1.00544
MEIS2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.8261
CHAGO-K-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.78243
HNF4G	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.7262
hippocampus (hippocampal formation)_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.66683
Foxj2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	23.3993
Brain Lower Grade Glioma_LGG_TCGA-DU-5855-01A-11R-1708-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Mouth	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.437
CCKBR	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.1513
YH13	CCLE Cell Line Gene CNV Profiles	-1.0	-1.80035
GSE216043_7_v_9_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
RBBP4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.58552
GSE221327_1_v_2_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
PROP1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.4586
NANOG	ENCODE Transcription Factor Targets	1.0	null
INTS3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.46192
H3K27me3_cardiac mesoderm_hg19_8	ENCODE Transcription Factor Binding Site Profiles	1.0	null
primary visual cortex (striate cortex, area V1/17)_16 pcw_M_12837	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.858807
PMC7592539-12885_2020_7456_MOESM4_ESM.xlsx-Sup_TableS3_LMS_del_genes_conf-10q22_1_TP63	Rummagene Transcription Factor Associations 2026	1.0	null
PMC4162954-12864_2014_6430_MOESM3_ESM.xlsx-Commonly_Deregulated_Genes-Genes_deregulated_in_both_2102Ep_and_NTera-2_cells_after_SOX2_knock-down_FDR-corrected_P-value_0_05_SOX2	Rummagene Transcription Factor Associations 2026	1.0	null
SEMA6A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.10378
Prostate adenocarcinoma_PRAD_TCGA-EJ-5503-01A-01R-1580-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NR4A2::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.0646
GSE175787_8_v_6_rhoc_human	RummaGEO Gene Perturbation Signatures	1.0	null
HMEL	CCLE Cell Line Gene Expression Profiles	1.0	1.44017
TMK1	DepMap CRISPR Gene Dependency	1.0	9.49346
MT-CO3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.4479
MOLM-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.988453
GBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.5347
POU3F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.6873
PA-TU-8902	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.92596
GSE205163,GSE205164_9_v_4_znf808_human	RummaGEO Gene Perturbation Signatures	-1.0	null
STAT3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.17124
nih 3T3	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-1.61338
BT-474	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.17959
Liver hepatocellular carcinoma_LIHC_TCGA-G3-A7M9-01A-23R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
POU2F1::SOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.1221
H3K27me3_liver_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POU3F2-20337985-501MEL-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
Pheochromocytoma and Paraganglioma_PCPG_TCGA-RW-A681-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HS 746T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.81451
PHTF2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.4375
MOLM13	CCLE Cell Line Gene Expression Profiles	1.0	1.37188
Bladder	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.437
KMM1	CCLE Cell Line Gene CNV Profiles	1.0	1.42851
ATL2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-4.35267
GSE202603_1_v_2_bhlhe40_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
SKNMC	CCLE Cell Line Gene CNV Profiles	-1.0	-1.54232
HCT 116	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.82693
CTCF_liver_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hsa-miR-3664-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
H3K27me3_kidney epithelial cell_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PSN1	DepMap CRISPR Gene Dependency	1.0	4.42721
orbital frontal cortex_21 pcw_F_12365	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.835222
Embryonic structure	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.437
Brain Lower Grade Glioma_LGG_TCGA-HT-7601-01A-11R-2090-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Nobox	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	34.8158
TUBA1B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.39589
Pancreatic adenocarcinoma_PAAD_TCGA-HZ-A49G-01A-11R-A26U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE216043_10_v_9_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
phenotypic abnormality	GWASdb SNP-Phenotype Associations	1.0	0.547426
NCI-H2595	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.844139
Brain Lower Grade Glioma_LGG_TCGA-HT-A4DS-01A-11R-A26U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
H3K9ac_ES-E14_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
SIRT4_KO_GSE56321_391_mouse_liver	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
NKX6-1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.2269
YY1_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
small intestine	HPA Tissue Protein Expression Profiles	1.0	1.06722
HIPK2_defectivemutant_29_GDS4233	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	-1.0	-2.20143
MRPL12	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.18051
NENF	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.51063
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A3AH-06A-11R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE205163,GSE205164_9_v_6_znf808_human	RummaGEO Gene Perturbation Signatures	-1.0	null
EPS15	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.35667
HOXB5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.0618
HCC33	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.938945
fallopian tube	GTEx Tissue Gene Expression Profiles	-1.0	-1.00544
SGO1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.03531
Brain Lower Grade Glioma_LGG_TCGA-DB-5274-01A-01R-1470-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A29N-06A-12R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE127790_10_v_2_zcchc8_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Cardiovascular system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.078
MSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.9827
SNU-423	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.92596
mRNA_OTX2_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
H3K27me3_Skeletal Muscle	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
hsa-miR-3133	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.13535
GSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.507
RBP5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.03395
sirt3_21397863_brown_adipose_lof_mouse_gpl1261_gds4058	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	-1.0	-0.449407
SCLC-21H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28003
BACH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.5978
ISX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.378
PMC12186250-NIHMS2085662-supplement-3.xlsx-4111_TEAD4_peaks-Gene_Name_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
GSE198165,GSE198166_5_v_3_zfp266_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
H3K4me1_H1-hESC_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
C3A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23208
primary somatosensory cortex (area S1, areas 3,1,2)_30 yrs_F_12290	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.41693
heart muscle	HPA Tissue Protein Expression Profiles	1.0	1.06722
PMC11574045-44318_2024_257_MOESM4_ESM.xlsx-Sheet1-Dataset_EV2_TEAD4-interacting_proteins_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
KIF26A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.1466
KDM4A	ENCODE Transcription Factor Targets	1.0	null
H2BK12ac_H9	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
Brain	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Placenta	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.437
abnormality of cation homeostasis	GWASdb SNP-Phenotype Associations	1.0	0.147522
ZNF24	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.4653
nasopharynx	HPA Tissue Protein Expression Profiles	1.0	1.06722
abnormality of the head	GWASdb SNP-Phenotype Associations	1.0	0.080924
Heart	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.078
inferolateral temporal cortex (area TEv, area 20)_13 pcw_M_12888	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.868594
GSE149264,GSE149267_4_v_3_trp53_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
HOXC11	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.6689
PrefrontalCortex	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-1.02337
RERFGC1B	CCLE Cell Line Gene CNV Profiles	1.0	3.18156
RL952	CCLE Cell Line Gene Expression Profiles	-1.0	-1.48592
Brain Lower Grade Glioma_LGG_TCGA-DB-A75L-01A-11R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SOX14	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.7265
H3K27me3_GM12878_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hsa-miR-140-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
Excretory gland	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.078
H3K4me1_H1	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
MEF2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.099
POLR2A_testis_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NIH:OVCAR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.907809
MKN-45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.18673
P3HR1	CCLE Cell Line Gene Expression Profiles	1.0	1.73203
EP300_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GSE127790_13_v_3_zcchc8_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
POU3F4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.4812
H3K27me3_MEL cell line_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ovary	HPA Tissue Protein Expression Profiles	-1.0	-2.50242
PMC9385264-NIHMS1828071-supplement-8.xlsx-AR-gene_symbol_AR	Rummagene Transcription Factor Associations 2026	1.0	null
MMP3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.56132
CDO1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.14839
Urinary system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.078
Skeletal muscle	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.078
NCIH524	CCLE Cell Line Gene CNV Profiles	-1.0	-1.93779
Disease by infectious agent	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.396
mRNA_MEF2C_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
ISL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	12.8965
RCOR1-19997604-NEURONS-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
urinary system disease	GWASdb SNP-Disease Associations	1.0	0.24405
GSE127790_9_v_2_zcchc8_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
ZIM3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.3997
SU-DHL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0388
K029AX	CCLE Cell Line Gene CNV Profiles	-1.0	-1.38088
MAP1LC3B2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.034
496100339_HIP_no dementia_TBI_79_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.15628
FNDC8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.13534
RAGE_knockout_267_GDS3755	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	1.0	1.44009
PL45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.907809
OVKATE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.51002
NCI-H2106	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0388
Colon	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.437
NR2F2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.85336
SNU398	CCLE Cell Line Gene CNV Profiles	1.0	1.40717
A-Vietnam-1203_CIP048_RG3-2004(H5N1)PB1-F2del_2day-MOI-10^3_None_GSE43302	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.8729
GSE218580_1_v_0_fentanyl_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
H2AFZ_fibroblast of lung_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PDCL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.41186
iron	GAD Gene-Disease Associations	1.0	null
Motile cilium	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
PMC6187090-mmc1.xlsx-TP53_positive-Symbol_TP53	Rummagene Transcription Factor Associations 2026	1.0	null
JHH7	CCLE Cell Line Gene Expression Profiles	1.0	1.99478
PRPF4B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.29125
dorsolateral prefrontal cortex_10 mos_M_12977	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.18066
lm10	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.867
HCC364	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.24015
Cecum	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.078
spleen	HPA Tissue Protein Expression Profiles	-1.0	-1.39338
Brain Lower Grade Glioma_LGG_TCGA-TQ-A7RV-01A-21R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SHSY5Y	CCLE Cell Line Gene Expression Profiles	-1.0	-1.54769
GSE88819_1_v_12_tug1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Brain Lower Grade Glioma_LGG_TCGA-E1-A7YU-01A-11R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
FOSL1::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.756
NCI-H358	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.989182
CTCF_CH12.LX_mm9_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
nervous system disease	GWASdb SNP-Disease Associations	1.0	0.047839
MDAMB361	DepMap CRISPR Gene Dependency	1.0	2.15404
Thorax	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.078
TCF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.1615
JUND_H1-hESC_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PMC6420765-12864_2019_5550_MOESM4_ESM.xlsx-R_D4_vs_D9-gene_id_y_CENPX	Rummagene Transcription Factor Associations 2026	1.0	null
RERF-GC-1B	COSMIC Cell Line Gene CNV Profiles	1.0	4.51153
GSE221327_1_v_0_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
496100363_TCx_no dementia_TBI_95-99_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.59453
TYKNU	CCLE Cell Line Gene Expression Profiles	1.0	1.42344
E2F6	ENCODE Transcription Factor Targets	1.0	null
abnormality of head or neck	GWASdb SNP-Phenotype Associations	1.0	0.080924
dorsolateral prefrontal cortex_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.892668
Cauda epididymis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.877
18535662-TableS2d	GeneSigDB Published Gene Signatures	1.0	null
GTF2F1	ENCODE Transcription Factor Targets	1.0	null
GSE88819_7_v_10_tug1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
DNM1L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.43982
TEF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.7601
NCIH1436	CCLE Cell Line Gene Expression Profiles	-1.0	-1.88598
mRNA_SMAD7_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
Acute Myeloid Leukemia_LAML_TCGA-AB-2849-03A-01T-0734-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Muscle	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.078
ZNF652	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.4366
CAL27	CCLE Cell Line Gene Expression Profiles	-1.0	-1.54065
RCOR1	ChEA Transcription Factor Targets	1.0	null
SIGLEC10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.37157
NCIH2444	CCLE Cell Line Gene CNV Profiles	1.0	1.86866
BARHL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.6258
Brain Lower Grade Glioma_LGG_TCGA-DU-A7TA-01A-11R-A33Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SNU81	DepMap CRISPR Gene Dependency	1.0	2.3304
Large intestine	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.437
Internal female genital organ	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.437
H3K27ac_H1-hESC_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
NR4A1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	59.073
H3K27me3_CD14-positive monocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mRNA_ZSCAN4C_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
NCIH1436	CCLE Cell Line Gene CNV Profiles	1.0	1.47753
PDX1	JASPAR Predicted Transcription Factor Targets	1.0	null
NCI-H446	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.843374
DFCI024	CCLE Cell Line Gene Expression Profiles	1.0	1.46099
NCI-H2452	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.988453
Pheochromocytoma and Paraganglioma_PCPG_TCGA-PR-A5PG-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hippocampus (hippocampal formation)_16 pcw_M_12879	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.907575
GATA2	JASPAR Predicted Transcription Factor Targets	1.0	null
hsa-miR-1205	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
Giant cell tumor cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.802
MOLM6	CCLE Cell Line Gene CNV Profiles	1.0	1.40898
H3K9ac_NT2-D1_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
NPM1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.57418
NFRKB	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.46
CENPF	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.05055
ZSCAN16	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.7155
hsa-miR-4688	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
SATB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.9534
VSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.011
FOS::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.321
ChIP_ZFX_18555785	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
Pheochromocytoma and Paraganglioma_PCPG_TCGA-RW-A685-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
YY1	JASPAR Predicted Transcription Factor Targets	1.0	null
HCC60	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.20963
Heart	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-1.51326
H3K4me3_ES-E14_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
HCC38	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.89157
Kidney Chromophobe_KICH_TCGA-KN-8426-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hippocampus (hippocampal formation)_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.869868
sensory system disease	GWASdb SNP-Disease Associations	1.0	0.574169
H322T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.39069
Hoxa13	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	23.8415
caudal ganglionic eminence_8 pcw_M_13058	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.39142
primary somatosensory cortex (area S1, areas 3,1,2)_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.05925
posterior (caudal) superior temporal cortex (area 22c)_25 pcw_F_12948	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.962374
DPM2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.29573
Brain Lower Grade Glioma_LGG_TCGA-HW-A5KJ-01A-12R-A27Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
H3K4me1_testis_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
LIAS	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.32084
COR-L47	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.45664
Kidney renal clear cell carcinoma_KIRC_TCGA-CJ-5681-11A-01R-1541-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HCC1359	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28003
GSE217378_2_v_0_lin28b_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
OE33	CCLE Cell Line Gene CNV Profiles	1.0	1.32911
Stargardt disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.639
anterior (rostral) cingulate (medial prefrontal) cortex_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.48058
embryonic stem no feeder	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-1.02944
NCIH1435	CCLE Cell Line Gene CNV Profiles	1.0	1.87007
EMSY	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.53081
BRIP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.75604
Thymus	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	0.920891
Oviduct	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.078
DOK	DepMap CRISPR Gene Dependency	1.0	3.02685
EN2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.0498
hsa-miR-4801	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
Prostate gland	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.078
posterior (caudal) superior temporal cortex (area 22c)_13 yrs_F_12831	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.899477
striatum_19 pcw_F_12885	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.11457
RBX1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.11141
MDAMB415	CCLE Cell Line Gene CNV Profiles	1.0	2.13628
HCC1428	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.83132
LHX9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.4535
496100327_PCx_possible Alzheimer's disease_TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.13521
CEP192	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.56211
Epididymis	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.078
NSUN7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.49516
TUBGCP3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.17338
H2BK20ac_H1	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
ETS1_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
A-431	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.83132
H3K27me3_cardiac mesoderm_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GSE88819_1_v_2_tug1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
HOXB7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.8556
posterior (caudal) superior temporal cortex (area 22c)_19 pcw_F_12885	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.27386
C8orf48	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.18139
TRAIP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.60657
Skin Cutaneous Melanoma_SKCM_TCGA-ER-A19H-06A-12R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
FOXI1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.29679
Brain Lower Grade Glioma_LGG_TCGA-P5-A5ET-01A-11R-A27Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
H3K27me3_Brain Substantia Nigra	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
ASRGL1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.64944
ZNF143_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ATRFLOX	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.82864
SLU7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.06956
HPAFII	DepMap CRISPR Gene Dependency	1.0	2.48276
GSE150072,GSE169209_6_v_11_qser1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
lateral ganglionic eminence_8 pcw_M_13058	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.885829
pyrazinamide_mus musculus_gpl6246_gse48027	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
HUP-T3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0892
GSE140997_4_v_8_nsun6_human	RummaGEO Gene Perturbation Signatures	1.0	null
VN1R1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.27426
496100355_HIP_no dementia_no TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.04339
EZH2_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RBBP5	ENCODE Transcription Factor Targets	1.0	null
GSE116930,GSE116935_3_v_0_hes7_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE217541,GSE217543_0_v_1_tet1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
BT-549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.89157
posterior (caudal) superior temporal cortex (area 22c)_3 yrs_F_12836	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.867393
Pheochromocytoma and Paraganglioma_PCPG_TCGA-WB-A80K-01A-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-34-5927-01A-11R-1820-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ETV2::HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.8053
PMC11252405-41467_2024_50426_MOESM4_ESM.xlsx-Fig_S4c-CTCF_CTCF	Rummagene Transcription Factor Associations 2026	1.0	null
lhx8_18509161_newborn_ovary_lof_mouse_gpl1261_gds3254	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	1.0	2.54349
JUND	ENCODE Transcription Factor Targets	1.0	null
DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.1804
CardiacMyocytes	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-2.59197
Skin Cutaneous Melanoma_SKCM_TCGA-D3-A1Q7-06A-11R-A18T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MEOX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.9214
TCF4-23295773-U87-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
TMEM200C	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.05608
YY1	ENCODE Transcription Factor Targets	1.0	null
APOA1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.49913
DCTN6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.72191
SNU869	CCLE Cell Line Gene Expression Profiles	1.0	1.82736
Lymphoma_burkitts(Daudi)	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-0.848253
MARS1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.66308
SNU-668	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.31652
primary somatosensory cortex (area S1, areas 3,1,2)_10 mos_M_12977	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.00875
KMS-21BM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.38763
GSE149264,GSE149267_4_v_1_trp53_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Swine influenza	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.396
BRF2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.0572
GSE168587,GSE168752_3_v_1_tp53_human	RummaGEO Gene Perturbation Signatures	-1.0	null
PMC6420765-12864_2019_5550_MOESM4_ESM.xlsx-R_D4_vs_D9-Row_names_CENPX	Rummagene Transcription Factor Associations 2026	1.0	null
hippocampus (hippocampal formation)_8 pcw_M_13058	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.10116
GSE216043_11_v_9_cisplatin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE221327_10_v_2_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
H3K9ac_H1-hESC_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
HNF4A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.6909
IM95	DepMap CRISPR Gene Dependency	1.0	3.66359
GSE171401_1_v_0_adnp_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
NCI-H1792	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.925479
Gastrointestinal tract	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.437
NR2F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	77.8274
Liver	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-1.26315
RI1	CCLE Cell Line Gene Expression Profiles	1.0	1.45627
embryonic stem feeder layer	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-1.21248
SNU1272	CCLE Cell Line Gene CNV Profiles	1.0	1.78132
SIRT4_KO_GDS4823_505_mouse_liver	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
HCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06572
Pancreatic adenocarcinoma_PAAD_TCGA-HZ-8003-01A-21R-2204-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
skeletal muscle	HPA Tissue Protein Expression Profiles	1.0	1.06722
Uterine cervix	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.078
ANAPC5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.11679
vagina	GTEx Tissue Gene Expression Profiles	-1.0	-1.00544
KMM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32587
Brain Lower Grade Glioma_LGG_TCGA-E1-A7YW-01A-11R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HESX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.4341
Lung adenocarcinoma_LUAD_TCGA-05-4397-01A-01R-1206-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hsa-miR-4434	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
RPN2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.70556
Dmrt1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	24.8597
FOXO1_KD_GDS2720_478_mouse_LSK	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
TECPR2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.15944
protein binding	GO Molecular Function Annotations 2015	1.0	null
cerebellar cortex_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.992827
PTK7_knockdown_185_GSE50138	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	1.0	1.93264
orbital frontal cortex_10 mos_M_12977	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.67302
orbital frontal cortex_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.980092
NR2C2AP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.19271
posterior (caudal) superior temporal cortex (area 22c)_13 pcw_F_12834	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.07244
hsa-miR-1321	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
GSE216043_3_v_5_cisplatin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
FOSL2::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.7198
Hmga1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	60.3795
B4GAT1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.68577
CNOT11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.3256
SREBF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.9186
Meiotic prophase fetal germ cell_Fetal gonad_Human	CellMarker Gene-Cell Type Associations	1.0	null
HNF1A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	103.081
dorsal thalamus_12 pcw_F_12960	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.03537
Brain Lower Grade Glioma_LGG_TCGA-FG-5963-02A-12R-A29R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MEOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.4311
Brain Lower Grade Glioma_LGG_TCGA-HW-7491-01A-11R-2027-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Mucosa	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.078
mainolfactoryepithelium.MOE.	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-0.936385
Age related macular degeneration	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.001
MEF2C	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	49.392
PMC8684775-CTM2-11-e640-s002.xlsx-Sheet1-Table_S3_MAF_file_of_the_CCS_samples_MAF	Rummagene Transcription Factor Associations 2026	1.0	null
hsa-miR-4330	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
hsa-miR-4762-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
ARFGEF2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.00973
Head	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
ventrolateral prefrontal cortex_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.896331
MANSC1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.00812
WM115	CCLE Cell Line Gene CNV Profiles	-1.0	-1.59792
KLE	DepMap CRISPR Gene Dependency	1.0	2.78087
Dlx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	27.7144
PMC10274973-media-3.xlsx-ST18-Supplementary_Table_18_476_Bonferroni_significant_results_P_2_67_x_10-6_of_gene_based_association_analyses_H-MAGMA_dlPFC_cortical_neurons_for_sensation_seeking_factor_ST18	Rummagene Transcription Factor Associations 2026	1.0	null
EFR3B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.0036
Bladder Urothelial Carcinoma_BLCA_TCGA-BT-A20O-01A-21R-A14Y-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
UBE3A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.25137
NBEAL1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.24741
kidney disease	GWASdb SNP-Disease Associations	1.0	1.19459
orbital frontal cortex_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.05128
GSE176008_8_v_1_azacitidine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
MEIS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.5666
disease	GWASdb SNP-Disease Associations	1.0	0.031606
LBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.7899
EIF2B5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.36569
EVSAT	DepMap CRISPR Gene Dependency	1.0	3.84922
Prostate adenocarcinoma_PRAD_TCGA-HC-8260-01A-11R-2263-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Arx	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	34.3409
hsa-miR-3622b-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
hsa-miR-4739	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
GSE214931_1_v_5_temozolomide_human	RummaGEO Drug Perturbation Signatures	1.0	null
Hmx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.1968
CHAGOK1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.71608
HOXA3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.5924
Prostate adenocarcinoma_PRAD_TCGA-XA-A8JR-01A-11R-A36G-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
mRNA_RHOX6_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
GSE217378_1_v_0_lin28b_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
CHD7_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SNU-449	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04585
NCI-H2126	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0388
Integument	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.078
GSE127790_5_v_2_zcchc8_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GSE205163,GSE205164_3_v_0_znf808_human	RummaGEO Gene Perturbation Signatures	1.0	null
ZNF354A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	151.323
PHOX2B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.6577
Disease of anatomical entity	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.396
GSE216043_11_v_6_cisplatin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
SOX21	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	74.4067
Arid3b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	37.7215
GSE148252_2_v_6_npas4_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Pheochromocytoma and Paraganglioma_PCPG_TCGA-WB-A81V-01A-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
disease of anatomical entity	GWASdb SNP-Disease Associations	1.0	0.035174
496100383_HIP_no dementia_no TBI_95-99_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.2447
H3K27me3_cardiac mesoderm_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
496100416_FWM_dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.38513
NDUFB4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.42373
abnormality of metabolism/homeostasis	GWASdb SNP-Phenotype Associations	1.0	0.042525
GSE216043_10_v_8_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
NCIH3255	CCLE Cell Line Gene Expression Profiles	-1.0	-1.77484
HS936T	CCLE Cell Line Gene Expression Profiles	1.0	2.22126
posterior (caudal) superior temporal cortex (area 22c)_26 pcw_F_12949	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-2.09348
rectum	HPA Tissue Protein Expression Profiles	1.0	1.06722
RIGI	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.11081
HSPA1B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.23037
NDUFA8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.372
RGPD6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.32534
Nr2e1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	44.0108
U178	CCLE Cell Line Gene CNV Profiles	-1.0	-1.43275
Viscus	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.437
Epilepsy and lamotrigine-induced maculopapular eruptions	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.7
KNS81	CCLE Cell Line Gene CNV Profiles	-1.0	-1.53825
EZH2	ENCODE Transcription Factor Targets	1.0	null
TRAPPC8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.34575
CAPAN1	CCLE Cell Line Gene Expression Profiles	-1.0	-1.51244
GSE241701_1_v_0_daxx_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
endometrium	HPA Tissue Protein Expression Profiles	-1.0	-0.733063
496100472_PCx_possible Alzheimer's disease_TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.76347
SNU478	CCLE Cell Line Gene Expression Profiles	1.0	1.9149
PK-59	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.87168
primary motor cortex (area M1, area 4)_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.962914
Prostate adenocarcinoma_PRAD_TCGA-EJ-5525-01A-01R-1580-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.3276
GSE182770,GSE182784_0_v_1_chd2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
NANOG_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
WEE1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.18832
Duodenum	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.078
Nasopharynx	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.437
ECEL1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.14118
H4C14	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.28202
GARS1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.83865
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4770-01A-01R-1503-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RPL30	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.71612
RPL10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.16886
SW 900	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.966507
PANK4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.46875
OVSAHO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06123
NCIN87	DepMap CRISPR Gene Dependency	1.0	2.79432
VAX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.8654
Influenza	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.396
Head and Neck squamous cell carcinoma_HNSC_TCGA-QK-A6VC-01A-23R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE189789_0_v_1_oridonin_human	RummaGEO Drug Perturbation Signatures	1.0	null
NRBF2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.4951
mRNA_SOX9_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
Lung	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.078
H3K27me3_ES-Bruce4_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TCF4	MotifMap Predicted Transcription Factor Targets	1.0	null
EP300	ENCODE Transcription Factor Targets	1.0	null
H3K4me2_H1-hESC_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
NCI-H2803	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.83132
cerebellar cortex_15 yrs_M_12299	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.824584
Sox1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	27.7086
OV7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.33462
H3K27me3_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
OTX	MotifMap Predicted Transcription Factor Targets	1.0	null
TLX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.2308
JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.6912
POLR2A_H1-hESC_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Lhx4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	20.4834
LMX1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	75.2991
POU3F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	50.8958
PMC4162954-12864_2014_6430_MOESM3_ESM.xlsx-NTera-2-Genes_deregulated_in_NTera-2_cells_after_SOX2_knock-down_FDR-corrected_P-value_0_05_SOX2	Rummagene Transcription Factor Associations 2026	1.0	null
MKN-74	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.58063
EEF1G	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	9.33216
Msx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	30.2511
NEUROG1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.4509
SK-MEL-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.47575
VSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.2611
RAD21	ENCODE Transcription Factor Targets	1.0	null
Small intestine	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.078
GSE205163,GSE205164_2_v_0_znf808_human	RummaGEO Gene Perturbation Signatures	1.0	null
Lhx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	81.9
Alx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	26.2692
496100538_HIP_no dementia_no TBI_87_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.60884
Rectum	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.437
ESRRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.3107
stomach	GTEx Tissue Gene Expression Profiles	1.0	1.40309
Urinary bladder	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.078
E2F1	JASPAR Predicted Transcription Factor Targets	1.0	null
SEC63	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.32661
Kidney renal clear cell carcinoma_KIRC_TCGA-DV-5573-01A-01R-1541-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
KMS21BM	CCLE Cell Line Gene CNV Profiles	-1.0	-2.07308
VPS37C	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.01399
primary motor cortex (area M1, area 4)_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.89362
GSE198380_0_v_1_phgdh_human	RummaGEO Gene Perturbation Signatures	-1.0	null
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Organism form	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.437
pancreas	GTEx Tissue Gene Expression Profiles	1.0	1.33182
POU2F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.4096
HOXA4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.9129
RFX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.2335
GSE149355_0_v_1_esrp1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
COLO 792	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.33462
Oral mucosa	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.078
ZNF35	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.0623
Pheochromocytoma and Paraganglioma_PCPG_TCGA-RW-A68G-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Dermatofibroma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.802
GSE149264,GSE149267_2_v_1_trp53_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
intracellular part	LOCATE Predicted Protein Localization Annotations	1.0	null
MOLP8	CCLE Cell Line Gene CNV Profiles	-1.0	-1.87254
H2AB2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.71375
CIT	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-4.09977
HUG1N	CCLE Cell Line Gene CNV Profiles	1.0	1.65209
SARS-CoV MA15_Day4-PFU-10^5_None_GSE50000	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.73453
DMS 79	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.938945
PGR	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.26592
Cardiac muscle	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.078
GSE198165,GSE198166_5_v_11_zfp266_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
H3K27me3_keratinocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PMC12019518-ao5c02459_si_002.xlsx-Table_S3-Table_S3_Screening_of_genes_that_are_commonly_upregulated_in_cells_on_stiff_substrate_and_down-regulated_by_KD_of_UBE2A_B_AR	Rummagene Transcription Factor Associations 2026	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-BT-A3PK-01A-21R-A220-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
AIFM2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.1879
DBP	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.5514
SKMEL3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.40832
GSE144500_8_v_11_ventx_human	RummaGEO Gene Perturbation Signatures	1.0	null
LS123	DepMap CRISPR Gene Dependency	1.0	8.20848
SARS-CoV NSP16_Day2_None_GSE49263	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	2.89978
KMS-12-PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28092
DCAF13	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.24492
HOXB9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.9031
Brain Lower Grade Glioma_LGG_TCGA-HT-7482-01A-11R-2027-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-56-8083-01A-11R-2247-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE221327_4_v_2_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
HOXD11	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.7328
Ppara	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	16.3005
Brain Lower Grade Glioma_LGG_TCGA-WY-A85C-01A-11R-A36H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
abnormality of the face	GWASdb SNP-Phenotype Associations	1.0	0.096311
ATF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.3702
CEBPD	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.3065
orbital frontal cortex_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.00599
SKA1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.30485
GSE160817_0_v_6_slamf6_human	RummaGEO Gene Perturbation Signatures	1.0	null
H3K4me1_spleen_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
FOXC1	JASPAR Predicted Transcription Factor Targets	1.0	null
dorsolateral prefrontal cortex_37 yrs_M_12303	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-2.09197
Lung adenocarcinoma_LUAD_TCGA-67-3774-01A-01R-0946-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.97765
ASPC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04585
ESRRB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.3895
FOXB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.1509
EXOSC2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.69395
Bladder Urothelial Carcinoma_BLCA_TCGA-FD-A6TD-01A-51R-A33J-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-CU-A0YN-01A-21R-A10U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SDC2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.04222
DLX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.4614
Sox17	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	25.3086
496100332_HIP_possible Alzheimer's disease_no TBI_86_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.97344
NUP58	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.07763
POMP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.43479
AM38	CCLE Cell Line Gene Expression Profiles	1.0	3.408
HOXA10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.8172
RAB3GAP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.00292
mediodorsal nucleus of thalamus_15 yrs_M_12299	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.38441
H4K5ac_H9	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A2MP-06A-11R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SUPT1	CCLE Cell Line Gene Expression Profiles	1.0	1.65779
CYREN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.10759
GSE124920_1_v_2_prmt1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
H3K4me1_embryonic fibroblast_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
Disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.396
TBP_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SNU-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.18673
primary somatosensory cortex (area S1, areas 3,1,2)_12 pcw_F_12835	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.913207
HOXA5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.142
Pancreatic adenocarcinoma_PAAD_TCGA-F2-A44H-01A-11R-A26U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RIOK1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.4741
DLX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.6653
Kidney renal clear cell carcinoma_KIRC_TCGA-CJ-5683-01A-11R-1541-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Whole body	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
GSE88819_0_v_10_tug1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
DKMG	CCLE Cell Line Gene CNV Profiles	-1.0	-1.79303
primary auditory cortex (core)_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.83505
RACK1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.42924
FBF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.68629
PE01	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.989182
TMEM214	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.19577
abnormality of the oral cavity	GWASdb SNP-Phenotype Associations	1.0	0.138113
HCT-116 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.739
POLR2A_MEL cell line_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
abnormality of the genitourinary system	GWASdb SNP-Phenotype Associations	1.0	0.078437
VENTX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.3037
Perturb_5161_KO_Trp53_SRP048945	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	10.9162
GSE211286_7_v_5_tcf12_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Plasma membrane bounded cell projection	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
telmisartan_rattus norvegicus_gpl4135_gse29445	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-RY-A83Y-01A-11R-A36H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE140997_2_v_8_nsun6_human	RummaGEO Gene Perturbation Signatures	1.0	null
primary motor cortex (area M1, area 4)_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.3671
STAT3	ChEA Transcription Factor Targets	1.0	null
Pheochromocytoma and Paraganglioma_PCPG_TCGA-WB-A80N-01A-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
POU5F1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.7164
DHX33	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.04194
LHX8_Deficiency_GDS3254_600_mouse_Newborn ovaries	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
orbital frontal cortex_16 pcw_M_12879	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.845411
PDAP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.25968
SMC3_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H2BK120ac_H1	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
PMC4162954-12864_2014_6430_MOESM3_ESM.xlsx-2102Ep-Genes_deregulated_in_2102Ep_cells_after_SOX2_knock-down_FDR-corrected_P-value_0_05_SOX2	Rummagene Transcription Factor Associations 2026	1.0	null
primary auditory cortex (core)_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.944079
abnormality of the urinary system	GWASdb SNP-Phenotype Associations	1.0	1.04429
Lymphoma_burkitts(Raji)	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-1.84195
Bronchus	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.078
preoptic	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-1.61658
Idiopathic fibrosing alveolitis_Lung Tissue_GSE21369	GEO Signatures of Differentially Expressed Genes for Diseases	1.0	1.3944
HCC1937	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28092
KMH2	CCLE Cell Line Gene Expression Profiles	1.0	2.65491
MGA::EVX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.5422
Brain Lower Grade Glioma_LGG_TCGA-S9-A7R8-01A-11R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
C32TG	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.844139
LCLC103H	CCLE Cell Line Gene Expression Profiles	-1.0	-2.16511
NR1H2::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	71.72
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-G8-6324-01A-11R-2213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ATAD2B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.24743
KDM4A_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GSE216043_7_v_8_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-4691-01A-01R-1277-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BICR10	DepMap CRISPR Gene Dependency	1.0	2.3135
GSE205976,GSE205978_1_v_0_cep83_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE191105_2_v_3_nat1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
CORO1B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.03298
Ovary	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	1.80606
PAX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.5084
TSSK3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.16493
amygdaloid complex_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.30102
anterior (rostral) cingulate (medial prefrontal) cortex_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.98032
Respiratory system disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.396
amygdaloid complex_15 yrs_M_12299	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.7626
Uterine Carcinosarcoma_UCS_TCGA-N5-A59F-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HSC4	DepMap CRISPR Gene Dependency	1.0	3.3528
Sarcoma_SARC_TCGA-SG-A849-01A-11R-A355-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
mRNA_ASCL2_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
E2F6_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H2AFZ_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
496100577_FWM_probable Alzheimer's disease_TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.72133
POU4F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	87.6436
KLF5_KO_GDS3509_553_mouse_ES cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
POLR2A	ENCODE Transcription Factor Targets	1.0	null
CAKI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24486
ATP5MJ	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.2037
HOXC13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.4481
Brain Lower Grade Glioma_LGG_TCGA-VM-A8C9-01A-11R-A36H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
OCILY3	CCLE Cell Line Gene Expression Profiles	1.0	1.42255
PSMC1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.91674
Radial spoke	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.992
GSE216043_7_v_4_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
amygdaloid complex_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.14335
MAX	ENCODE Transcription Factor Targets	1.0	null
GSE116580_0_v_1_smug1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
tobacco use disorder	GAD Gene-Disease Associations	1.0	null
RPMI8226	CCLE Cell Line Gene Expression Profiles	1.0	1.7656
EDEM3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.14637
H3K9me3_G1E_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
Male infertility	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.044
RPMI-7951	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.830181
H3K4me3_testis_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
Vertebrate muscular system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.078
RAB13	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.12423
PRKRA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.36561
inferolateral temporal cortex (area TEv, area 20)_24 pcw_M_12288	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.931289
SCLC21H	CCLE Cell Line Gene CNV Profiles	-1.0	-1.3521
HOXD12::ELK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.4922
Pax7	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	20.0741
CEBPG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.5591
STAT3-23295773-U87-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
TNFRSF1A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.62313
GSE205163,GSE205164_1_v_0_znf808_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE175883_0_v_1_dis3_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
496100341_TCx_no dementia_no TBI_81_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.11355
MONOMAC1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.68303
posterior (caudal) superior temporal cortex (area 22c)_10 mos_M_12977	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.32692
ERAP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.17001
hsa-miR-1248	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
UACC-257	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.97765
SH2D3A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.54997
TMEM234	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.9067
DBT	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.32243
NOTO	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.0913
KP1N	DepMap CRISPR Gene Dependency	1.0	2.19601
HOXB6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8947
hsa-miR-4646-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
Nr1h2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	14.5394
ZNF558	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	80.4947
MCAS	CCLE Cell Line Gene CNV Profiles	1.0	1.69228
PLEKHF2	Pathway Commons Protein-Protein Interactions	1.0	null
POU4F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.5812
HDAC2_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PHOX2B-30127528-KELLY-HUMAN-BRAINNEUROBLASTOMA	ChEA Transcription Factor Targets 2022	1.0	null
SRP72	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.49731
posterior (caudal) superior temporal cortex (area 22c)_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.22099
Rif1_KD_GDS4943_242_mouse_J1 embryonic stem cell (ESCs) line	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
USF2	JASPAR Predicted Transcription Factor Targets	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-RS-A6TO-01A-32R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hsa-miR-4756-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
GSE216043_3_v_9_cisplatin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Hematopoietic system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.078
TTC3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.63681
TBP	ENCODE Transcription Factor Targets	1.0	null
soft tissue	HPA Tissue Protein Expression Profiles	-1.0	-0.92891
liver	HPA Tissue Protein Expression Profiles	-1.0	-0.733063
POU1F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.9
HUNS1	CCLE Cell Line Gene Expression Profiles	1.0	2.40871
PMC4219345-1471-2121-14-52-S4.xlsx-BORIS_6dN-Gene_Symbol_CTCFL	Rummagene Transcription Factor Associations 2026	1.0	null
BICRA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.15756
HCC2911	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.22559
lymph node	HPA Tissue Protein Expression Profiles	-1.0	-1.39338
EVX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	55.3923
Lung squamous cell carcinoma_LUSC_TCGA-18-4083-01A-01R-1100-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
striatum_13 yrs_F_12831	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.09231
APOBEC3B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.51363
H3K27me3_Brain Anterior Caudate	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
CTBP2_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
dorsolateral prefrontal cortex_13 pcw_M_12888	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.09042
KASUMI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.08707
WTIP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.11446
RIF1_KD_GDS4943_13_mouse_J1 ESC	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
537 MEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28003
HCC366	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.968074
striatum_12 pcw_F_12960	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.01132
G121	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.989182
BARX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.2017
EMX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.9017
RPLP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.24216
SIRT4_KO_GDS4823_30_mouse_hepatocytes	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
lateral ventricle	HPA Tissue Protein Expression Profiles	-1.0	-1.39338
Crx	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	24.483
amygdaloid complex_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.13529
H3K9me3_G1E_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CN-A49A-01A-11R-A24H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HOXD12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.1122
CHD7	ENCODE Transcription Factor Targets	1.0	null
FLI1::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.4335
UOK101	CCLE Cell Line Gene CNV Profiles	1.0	1.4527
PANC0327	DepMap CRISPR Gene Dependency	1.0	6.74753
GSE120200,GSE127269_1_v_2_asxl1_human	RummaGEO Gene Perturbation Signatures	1.0	null
KDM1A	Pathway Commons Protein-Protein Interactions	1.0	null
Irf1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	37.0542
COR-L88	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.939707
Outer dense fiber	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.117
TBP_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-77-8148-01A-11R-2247-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Sox5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	17.1371
Neck	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.078
hsa-miR-4778-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
MFE280	DepMap CRISPR Gene Dependency	1.0	4.36855
FAM118B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.32706
GBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.6318
ACAA2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.33309
H3K4me3_cardiac mesoderm_hg19_4	ENCODE Histone Modification Site Profiles	1.0	null
Sperm midpiece	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
CTCF_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Hmx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.0356
GSE88819_1_v_8_tug1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE221327_8_v_0_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE149264,GSE149267_4_v_5_trp53_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.5419
ZBTB7C	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.06506
duodenum	HPA Tissue Protein Expression Profiles	1.0	1.06722
CEBPA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.2305
MSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.6097
Manchette	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.188
striatum_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.10371
ATP11A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.24229
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A2M6-06A-12R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
retina	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-0.8555
RHOXF2B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.03161
GSE88819_1_v_4_tug1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
BT20	CCLE Cell Line Gene CNV Profiles	-1.0	-2.47167
Sperm flagellum	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.871
SOX4	MotifMap Predicted Transcription Factor Targets	1.0	null
Vermiform appendix	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.078
496100313_HIP_possible Alzheimer's disease_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.76482
primary auditory cortex (core)_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.988216
orbital frontal cortex_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-2.03888
KARPAS620	CCLE Cell Line Gene Expression Profiles	1.0	1.72089
GSE241701_4_v_0_daxx_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
RERF-GC-1B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.56159
GATA2-20887958-HPC-7-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
TAF1	ENCODE Transcription Factor Targets	1.0	null
Respiratory system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.078
ELK1::HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.8272
abnormality of the tongue	GWASdb SNP-Phenotype Associations	1.0	0.489002
hsa-miR-661	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
ACSL1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.47254
posterior (caudal) superior temporal cortex (area 22c)_12 pcw_F_13060	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.968392
OVKATE	CCLE Cell Line Gene CNV Profiles	-1.0	-1.47282
NRL	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.2594
H2AFZ_astrocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
primary visual cortex (striate cortex, area V1/17)_13 pcw_F_12834	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.08149
JDP2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.9385
JMSU1	CCLE Cell Line Gene Expression Profiles	-1.0	-1.49118
ZNF138	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.01666
Bardet-Biedl syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.358
VMRC-LCD	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.31111
GSE179002_3_v_7_caprin1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
H3K27me3_Brain Cingulate Gyrus	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
molecular_function	GO Molecular Function Annotations 2015	1.0	null
binding	GO Molecular Function Annotations 2015	1.0	null
acquired metabolic disease	GWASdb SNP-Disease Associations	1.0	0.126353
AP4M1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.66808
HOXA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	60.2791
ZNF667	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.6932
hsa-miR-4762-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
icSARS CoV_12Hour_None_GSE37827	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	0.70881
Ciliopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.32
NCIH1792	CCLE Cell Line Gene Expression Profiles	-1.0	-2.4543
Brain Lower Grade Glioma_LGG_TCGA-HT-7604-01A-11R-2090-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
small intestine	GTEx Tissue Gene Expression Profiles	-1.0	-1.00544
GUK1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.59172
CTBP2	ENCODE Transcription Factor Targets	1.0	null
hsa-miR-524-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
CCAR1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.40638
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-FF-8061-01A-11R-2213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Malaria	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.552288
NCIH226	CCLE Cell Line Gene CNV Profiles	-1.0	-1.48891
HUPT4	DepMap CRISPR Gene Dependency	1.0	2.9155
ZBTB32	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.7209
PK59	CCLE Cell Line Gene CNV Profiles	1.0	2.56448
U-2932	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.5636
GSE88819_6_v_10_tug1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Hoxd13	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	17.9396
MZT2B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.15485
EPLC272H	CCLE Cell Line Gene Expression Profiles	1.0	1.50281
PHOX2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.5213
ESX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.5069
inferolateral temporal cortex (area TEv, area 20)_13 pcw_M_12820	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.58634
PL4	DepMap CRISPR Gene Dependency	1.0	12.9016
GSE142210_11_v_7_panobinostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
DUXA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	59.8959
mineral metabolism disease	GWASdb SNP-Disease Associations	1.0	0.323792
TP53INP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.42507
H3K27me3_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Dot1l_DELETION_GDS4295_426_mouse_AF9 - Mixed Lineage Leukemia (MLL) cells - 3 days	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
BDH1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.98812
primary auditory cortex (core)_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.58249
H3K4me1_ES-Bruce4_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
EIF3I	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.28445
mRNA_MYOD1_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
THP-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.78243
A-Vietnam-1203_CIP048_RG4-2004(H5N1)PB2-627E_4day-MOI-10^4_None_GSE43301	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-2.04538
iron metabolism disease	GWASdb SNP-Disease Associations	1.0	0.503822
mRNA_SFPI1_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
Mitotic arrest phase fetal germ cell_Fetal gonad_Human	CellMarker Gene-Cell Type Associations	1.0	null
JUND	JASPAR Predicted Transcription Factor Targets	1.0	null
MCAS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.868896
POU3F2	ChEA Transcription Factor Targets	1.0	null
PDE10A_KO_GSE40377_581_mouse_Striatum and hippocampus	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
CAPAN-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06572
Brain Lower Grade Glioma_LGG_TCGA-HT-7605-01A-11R-2090-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HCC4006	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0892
FOXC1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	52.8117
496100562_FWM_no dementia_TBI_95-99_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.23643
496100487_HIP_probable Alzheimer's disease_no TBI_89_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.59567
REST-19997604-NEURONS-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
Intestine	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.437
Dlx4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	28.2675
A-Netherlands-602-2009(H1N1)_7Hour_None_GSE40844	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	2.03922
RAX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.0304
SMIM30	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.56047
hsa-miR-4704-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
ZFX	ChEA Transcription Factor Targets	1.0	null
CORL311	CCLE Cell Line Gene Expression Profiles	-1.0	-1.49904
SNU119	CCLE Cell Line Gene Expression Profiles	-1.0	-1.59784
hsa-miR-4768-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
OVSAHO	CCLE Cell Line Gene CNV Profiles	1.0	1.32911
Shox2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	30.3726
YMB-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.988453
GSE158285_0_v_1_ddx5_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
primary auditory cortex (core)_16 pcw_M_12287	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.975329
BT-20	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.43866
AR	ChEA Transcription Factor Targets	1.0	null
TCF4	ChEA Transcription Factor Targets	1.0	null
Kidney renal papillary cell carcinoma_KIRP_TCGA-P4-A5E8-01A-11R-A28H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
A-Vietnam-1203_CIP048_RG4-2004(H5N1)NS1trunc124_2day-MOI-10^3_None_GSE44445	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.6018
LMX1A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	58.0397
mRNA_T_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
all	GWASdb SNP-Phenotype Associations	1.0	0.0347
TECR	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.03646
Facial hemiatrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.328
Cell projection	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
LS411N	DepMap CRISPR Gene Dependency	1.0	5.56679
hsa-miR-4253	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
primary motor cortex (area M1, area 4)_16 pcw_M_12837	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.62247
mRNA_NR2F2_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
FOS	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.9648
SK-MEL-31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.989182
RAX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.044
GSE147366_3_v_0_med13_human	RummaGEO Gene Perturbation Signatures	-1.0	null
PSN1	CCLE Cell Line Gene CNV Profiles	1.0	1.40141
Brain Lower Grade Glioma_LGG_TCGA-FG-6689-01A-11R-1896-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
amygdaloid complex_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.19633
SCH	DepMap CRISPR Gene Dependency	1.0	2.38647
HOXB8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.985
H3K4me3_cardiac mesoderm_hg19_3	ENCODE Histone Modification Site Profiles	1.0	null
primary motor cortex (area M1, area 4)_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.932469
TAP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.0918
SNRNP25	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.33348
mRNA_POU5F1_20526341	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
OVK18	CCLE Cell Line Gene CNV Profiles	1.0	1.53741
H3K9me3_G1E_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
GSE191105_0_v_3_nat1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
ERF::HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.7895
COR-L279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.989182
GSE135439_0_v_1_pax5_human	RummaGEO Gene Perturbation Signatures	1.0	null
H3K27ac_testis_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
HDAC2	ENCODE Transcription Factor Targets	1.0	null
GSE216043_10_v_4_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
Lhx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.467
HCC1187	DepMap CRISPR Gene Dependency	1.0	11.5433
CCNG1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.55064
OVTOKO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.83132
SNU685	CCLE Cell Line Gene Expression Profiles	-1.0	-1.82472
Stat2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	94.5383
H3K27me3_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SNU-398	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.01422
PHF2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.60173
FOSL1::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.208
ARMC10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.32455
ZFX-18555785-MESC-mouse	ChEA Transcription Factor Binding Site Profiles	1.0	null
TP63-23658742-EP156T-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
Pancreatic adenocarcinoma_PAAD_TCGA-H6-8124-11A-01R-2404-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SIRT4_KO_GDS4823_22_mouse_Liver	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
Prostate adenocarcinoma_PRAD_TCGA-HC-8260-11A-01R-2263-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
A-Vietnam-1203_CIP048_RG3-2004(H5N1)mutPB1-F2del_3Hour_None_GSE43203	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-2.02318
NR4A2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	57.2377
Skin Cutaneous Melanoma_SKCM_TCGA-D9-A4Z3-01A-11R-A266-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RARA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	72.9037
bronchus	HPA Tissue Protein Expression Profiles	1.0	1.06722
MIXL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.1075
MAFK	ENCODE Transcription Factor Targets	1.0	null
CENPV	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.51829
GSE140997_4_v_3_nsun6_human	RummaGEO Gene Perturbation Signatures	1.0	null
NR6A1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.5942
TAF1_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
M-1	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-0.878273
HTR1D	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.19252
Brain Lower Grade Glioma_LGG_TCGA-P5-A735-01A-11R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
YY1_KD_GDS3788_488_human_HeLa	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
Coiled-coil domain-containing protein 172	InterPro Predicted Protein Domain Annotations	1.0	null
CJM	CCLE Cell Line Gene Expression Profiles	-1.0	-1.61404
IKBKB_Constitutional activation_GDS4119_621_mouse_Prostate epithelium	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-4688-01A-01R-1277-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RBBP5_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HOXB4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	57.7806
cell part	LOCATE Predicted Protein Localization Annotations	1.0	null
Viral infectious disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.396
Brain Lower Grade Glioma_LGG_TCGA-TM-A7CF-02A-11R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
H3K27me3_Brain Inferior Temporal Lobe	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
BICR 78	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.65076
Bronchoalveolar system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.078
POU6F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.894
Rarb	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	58.332
HS936T	DepMap CRISPR Gene Dependency	1.0	2.21634
FGF22	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.74288
GSE216043_11_v_1_cisplatin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
abnormality of nervous system physiology	GWASdb SNP-Phenotype Associations	1.0	0.054384
SNU213	CCLE Cell Line Gene Expression Profiles	-1.0	-1.73821
HOXC9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.3585
GSE176008_8_v_3_azacitidine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
UNCX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.1155
inferolateral temporal cortex (area TEv, area 20)_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.22055
SNU478	CCLE Cell Line Gene CNV Profiles	1.0	2.16897
CREB1	JASPAR Predicted Transcription Factor Targets	1.0	null
HS 683	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.61845
SRF	JASPAR Predicted Transcription Factor Targets	1.0	null
GSE240386,GSE242143_8_v_6_morc2_human	RummaGEO Gene Perturbation Signatures	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-DU-7299-01A-21R-2027-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Severe autoimmune type 2 diabetes	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.522185
JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.9134
Head	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.437
FOSL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.7444
GPN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.13528
CHD1	ENCODE Transcription Factor Targets	1.0	null
TP63	ChEA Transcription Factor Targets	1.0	null
GCT	CCLE Cell Line Gene Expression Profiles	-1.0	-1.52865
MAPK14_knockout_14_GDS2693	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	-1.0	-0.998982
H3K4ac_H9	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
496100543_FWM_probable Alzheimer's disease_TBI_78_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.18064
posteroventral (inferior) parietal cortex_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.948816
KPNYN	CCLE Cell Line Gene CNV Profiles	-1.0	-1.73317
Throat	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.078
Lung squamous cell carcinoma_LUSC_TCGA-46-6026-01A-11R-1820-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HOXA6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.8344
LHX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.7769
CAND1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.27665
TEKTIP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.02369
RPP14	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.14612
COV318	CCLE Cell Line Gene CNV Profiles	1.0	1.99035
RILPL2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.65617
posteroventral (inferior) parietal cortex_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.76939
lc90	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.443
496100566_FWM_no dementia_no TBI_82_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.88302
FOXO1	ChEA Transcription Factor Targets	1.0	null
MDA-MB-157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.17959
Adrenocortical carcinoma_ACC_TCGA-OR-A5JP-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Nervous system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
hsa-miR-4731-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
POU4F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	79.8466
MRTFA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.28265
inferolateral temporal cortex (area TEv, area 20)_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.9216
KS1	CCLE Cell Line Gene Expression Profiles	-1.0	-2.67356
BCL6B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.8177
ARGFX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.5431
GlobusPallidus	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	0.920891
MLKL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.3444
NCIH1963	CCLE Cell Line Gene CNV Profiles	-1.0	-1.61447
Iron	dbGAP Gene-Trait Associations	1.0	0.005048
pou5f1_20526341_human_embryonic_stem_cells_hesc_lof_human_gpl6947_gse21135	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	-1.0	-0.468956
Foxj3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	31.8155
amygdaloid complex_12 pcw_F_12835	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.56066
RMI1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.41829
NCI-H2135	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.33892
Brain Lower Grade Glioma_LGG_TCGA-HT-7684-01A-11R-2256-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RH30	CCLE Cell Line Gene CNV Profiles	1.0	1.79613
cerebellar cortex_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.962374
FOXL1	JASPAR Predicted Transcription Factor Targets	1.0	null
Thyroid gland	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.078
EZH2_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NANOG	ChEA Transcription Factor Targets	1.0	null
PAX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.5108
SARS-CoV MA15_Day7-PFU-10^4_None_GSE50000	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.70563
PANC 02.03	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.875774
MDA-MB-415	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.40488
TOP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.71685
Bladder Urothelial Carcinoma_BLCA_TCGA-BT-A2LA-01A-11R-A18C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BT474	CCLE Cell Line Gene CNV Profiles	-1.0	-2.72935
THOC5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.59575
Head and Neck squamous cell carcinoma_HNSC_TCGA-MT-A7BN-01A-12R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SOX13	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.08155
Uterine Carcinosarcoma_UCS_TCGA-N5-A4RD-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Arid5a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	51.7603
Facial nerve disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.503
Lymphoid tissue	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.078
anterior (rostral) cingulate (medial prefrontal) cortex_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.17694
143B	CCLE Cell Line Gene Expression Profiles	-1.0	-1.82402
H3K27me3_astrocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
FOSL1::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.6137
Bladder Urothelial Carcinoma_BLCA_TCGA-FD-A3SM-01A-11R-A22U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PL21	CCLE Cell Line Gene Expression Profiles	1.0	1.54794
GSE216043_11_v_2_cisplatin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE211286_4_v_6_tcf12_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
hsa-miR-491-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
TOV21G	CCLE Cell Line Gene CNV Profiles	1.0	1.60882
mRNA_GATA3_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
9+2 motile cilium	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
HOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.5807
EMX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.1195
MNX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.0777
Prostate adenocarcinoma_PRAD_TCGA-EJ-7321-11A-01R-2263-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
STAT4	MotifMap Predicted Transcription Factor Targets	1.0	null
thyroid	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	1.23045
abnormality of the nervous system	GWASdb SNP-Phenotype Associations	1.0	0.039869
gallbladder	HPA Tissue Protein Expression Profiles	1.0	1.06722
PPARA::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.2806
Gall bladder	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.437
disease of metabolism	GWASdb SNP-Disease Associations	1.0	0.075455
KDM7A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.22169
cytoplasm	LOCATE Predicted Protein Localization Annotations	1.0	null
GSE214931_2_v_5_temozolomide_human	RummaGEO Drug Perturbation Signatures	1.0	null
Ileocecum	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.078
ZNF423	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.17655
Skin Cutaneous Melanoma_SKCM_TCGA-D3-A51K-06A-11R-A266-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RPS17	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.11632
Localized scleroderma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.011
NCIH1694	CCLE Cell Line Gene CNV Profiles	-1.0	-2.12189
Urinary tract	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.078
59M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.890039
hsa-miR-188-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
OSC19	DepMap CRISPR Gene Dependency	1.0	4.72762
GSE133087_1_v_0_metformin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
AN3 CA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.39069
H3K27me3_Pancreatic Islets	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
ALX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.3126
hsa-miR-4777-5p	TargetScan Predicted Conserved microRNA Targets	1.0	1.45615
Foxl2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	31.6857
RERFGC1B	DepMap CRISPR Gene Dependency	1.0	2.12652
testis	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	2.09859
orbital frontal cortex_21 pcw_M_12886	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.867459
CUL1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.20967
COV318	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.41623
KASUMI1	CCLE Cell Line Gene CNV Profiles	1.0	1.4297
PAX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.7209
NANOG-16518401-MESC-mouse	ChEA Transcription Factor Binding Site Profiles	1.0	null
PMC10274973-media-3.xlsx-ST18-Unnamed_9_ST18	Rummagene Transcription Factor Associations 2026	1.0	null
BAZ1A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.40216
EN1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.6752
18614019-TableS4c	GeneSigDB Published Gene Signatures	1.0	null
OCI-M1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16092
hsa-miR-4680-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.13535
GSE214931_4_v_5_temozolomide_human	RummaGEO Drug Perturbation Signatures	1.0	null
HOXD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.2687
GATA4_Deletion - for the second exon_GDS2316_712_mouse_Heart ventricles (of GATA4 animals heterozygous)	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
ST486	CCLE Cell Line Gene Expression Profiles	1.0	1.44835
GSE127790_13_v_2_zcchc8_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Pheochromocytoma and Paraganglioma_PCPG_TCGA-SP-A6QF-01A-12R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
TEAD2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.0387
NCIH524	CCLE Cell Line Gene Expression Profiles	-1.0	-2.07306
GSE221327_8_v_2_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
CTCF_thymus_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
LHX5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.8638
H2AFZ_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GSE198165,GSE198166_5_v_10_zfp266_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE113817_0_v_1_bach1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
QPCT	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.41321
trachea	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-0.842834
H2AFZ_osteoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-MZ-A5BI-01A-31R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PRRX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.0947
HOXC12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.2915
MCM7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.05066
YY1	MotifMap Predicted Transcription Factor Targets	1.0	null
AR-20517297-VCAP-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-FG-8188-01A-11R-2256-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ACHN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10471
Skeletal system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.078
HJURP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.30918
PMC3303130-NIHMS40463-supplement-4.xls-KamKwaMuk_AA_differences-human_geneID_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
Muscular system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.078
PKNOX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.0414
MOLP2	CCLE Cell Line Gene Expression Profiles	1.0	2.14454
ZNF143	ENCODE Transcription Factor Targets	1.0	null
496100314_HIP_no dementia_TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	6.45593
abnormality of taste sensation	GWASdb SNP-Phenotype Associations	1.0	0.489002
Parathyroid gland	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.078
Hmx2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	40.1135
hippocampus (hippocampal formation)_12 pcw_F_13060	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.74488
MEF2B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	47.8336
abnormality of ion homeostasis	GWASdb SNP-Phenotype Associations	1.0	0.147522
Acute Myeloid Leukemia_LAML_TCGA-AB-2821-03A-01T-0735-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CHD1_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PMC10882188-ADB-29-e13365-s002.xlsx-ST18-Unnamed_8_ST18	Rummagene Transcription Factor Associations 2026	1.0	null
RAD21_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Sperm flagellum	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
NCI-H2196	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0388
SUPT11	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36958
Tonsil	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.078
496100465_HIP_possible Alzheimer's disease_TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.49271
Esophagus - Gastroesophageal Junction	GTEx Tissue Gene Expression Profiles 2023	1.0	7.21229
RWDD4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.33902
HNF1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	88.1052
TIMELESS	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.12313
GSE179031_3_v_1_foxp1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4790-01A-01R-1305-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null