association dataset threshold value standardized value hsa-miR-630 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.07142 CTCF_GM12874_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null r9 part of basointermediate reticular formation Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.86885 NCI-H2198 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.846785 ZNF213 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 85.7686 ESR2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 30.9045 ZNF341 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 18.0029 GTF2F1_H1-hESC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE131377_1_v_3_spocd1_mouse RummaGEO Gene Perturbation Signatures -1.0 null primary motor cortex (area M1, area 4)_23 yrs_M_12300 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -0.882917 hsa-miR-4677-5p TargetScan Predicted Conserved microRNA Targets 1.0 0.078844 SOHLH2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 17.5932 HUH7 DepMap CRISPR Gene Dependency 1.0 3.10711 dorsal periolivary nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.3297 pancreas BioGPS Mouse Cell Type and Tissue Gene Expression Profiles 1.0 1.46765 hsa-miR-548s TargetScan Predicted Conserved microRNA Targets 1.0 0.90397 CAL 54 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.829749 Brain Lower Grade Glioma_LGG_TCGA-E1-A7YW-01A-11R-A34R-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null KE39 CCLE Cell Line Gene Expression Profiles 1.0 1.64207 hsa-miR-302f TargetScan Predicted Nonconserved microRNA Targets 1.0 1.2992 KP2 CCLE Cell Line Gene Expression Profiles -1.0 -1.99238 CTCF_osteoblast_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CHD1_H1-hESC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null female reproductive system TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.054467 r4 part of lateral pontine nuclei Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -2.08187 Lung squamous cell carcinoma_LUSC_TCGA-21-5782-01A-01R-1635-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null JUND ENCODE Transcription Factor Targets 1.0 null GSE65617_2_v_3_aire_mouse RummaGEO Gene Perturbation Signatures -1.0 null r3 roof plate Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -2.51233 FTC238 CCLE Cell Line Gene Expression Profiles 1.0 2.1641 Secondary spermatocyte TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.63 Chronotype GWAS Catalog SNP-Phenotype Associations 2025 1.0 1.5301 primary somatosensory cortex (area S1, areas 3,1,2)_13 pcw_F_12834 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 0.836895 CTCF_GM13977_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null striatum_13 pcw_M_12888 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 0.956148 CTCF_thymus_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null SERTAD3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.64899 GSE210655_3_v_7_cisplatin_mouse RummaGEO Drug Perturbation Signatures -1.0 null intracellular membrane-bounded organelle LOCATE Predicted Protein Localization Annotations 1.0 null Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-C5-A0TN-01A-21R-A14Y-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null MAX_H1-hESC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null superficial stratum of r6BL Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.47338 HCFC1_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null TEAD4_H1-hESC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null endocrine gland TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.053443 EFM-192A Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.12806 hsa-miR-653 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.20993 Lateral element COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.689 EFM-192C Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.88839 Spermatid TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.508 Nuclear cohesin complex COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 1.486 PTGER1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.70273 PANC0504 CCLE Cell Line Gene Expression Profiles 1.0 1.35568 H3K9me3_fibroblast of lung_hg19_3 ENCODE Histone Modification Site Profiles 1.0 null H2AFZ ENCODE Transcription Factor Targets 1.0 null HUH1 CCLE Cell Line Gene CNV Profiles 1.0 1.41401 vitamin c_mus musculus_gpl6246_gse19377 GEO Signatures of Differentially Expressed Genes for Small Molecules -1.0 null H357 DepMap CRISPR Gene Dependency 1.0 2.30136 hsa-miR-3915 TargetScan Predicted Conserved microRNA Targets 1.0 0.119151 ETV5::FIGLA JASPAR Predicted Human Transcription Factor Targets 2025 1.0 59.054 G292CLONEA141B1 CCLE Cell Line Gene CNV Profiles 1.0 2.59986 THAP1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 35.5728 Spermatocyte TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.48 kidney GTEx Tissue Gene Expression Profiles 1.0 1.00357 hsa-miR-3915 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.921135 HCC1500 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.053 medial part of r10B Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.17421 CTCF_GM12869_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null LOX-IMVI Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.988927 striatum_8 yrs_M_12841 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -0.826269 HEY1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 20.3504 GSE140576_0_v_2_plag1_mouse RummaGEO Gene Perturbation Signatures 1.0 null superficial stratum of r3BI Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -2.30159 HS822T CCLE Cell Line Gene Expression Profiles 1.0 1.40296 Internal male genital organ TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 1.0 1.227 r4 part of medial pontine nuclei Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.24484 CTCF_GM12891_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null NCOA2_KO_GSE41558_19_mouse_heart GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null ZBTB24 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 45.8092 CTCF_A549_hg19_10 ENCODE Transcription Factor Binding Site Profiles 1.0 null OCI-LY-10 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.2433 r5 part of the cochlear column Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.1377 PBX1-22567123-OVCAR3-HUMAN ChEA Transcription Factor Binding Site Profiles 1.0 null ETS2 MotifMap Predicted Transcription Factor Targets 1.0 null r3 part of spinal trigeminal sensory column, oral part Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.27131 Brain Lower Grade Glioma_LGG_TCGA-FG-A70Y-01A-12R-A34R-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null ZNF189 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 19.8694 PRPK Kinase Library Serine Threonine Kinome Atlas 1.0 null testis BioGPS Mouse Cell Type and Tissue Gene Expression Profiles 1.0 2.09859 Gracile nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.04973 E2F6_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null Bladder Urothelial Carcinoma_BLCA_TCGA-E7-A7PW-01A-11R-A352-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null mRNA_MSC_19796622 ESCAPE Omics Signatures of Genes and Proteins for Stem Cells -1.0 null r3 part of medial pontine nuclei Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.40792 Oligospermia DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.453 CTCF_GM12870_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Pheochromocytoma and Paraganglioma_PCPG_TCGA-W2-A7UY-01A-11R-A35L-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null posteroventral (inferior) parietal cortex_40 yrs_F_12304 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -0.88941 496100320_PCx_no dementia_TBI_79_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 4.38404 hsa-miR-4680-5p TargetScan Predicted Conserved microRNA Targets 1.0 0.714812 Coloboma DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.011 Salivarygland BioGPS Human Cell Type and Tissue Gene Expression Profiles 1.0 0.842862 FAM20B CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.84517 Morning person GWAS Catalog SNP-Phenotype Associations 2025 1.0 1.4 dorsolateral prefrontal cortex_19 pcw_F_12885 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 0.908252 CardiacMyocytes BioGPS Human Cell Type and Tissue Gene Expression Profiles -1.0 -1.34411 Retrochiasmatic area Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.41746 IRS2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.42324 Rectum adenocarcinoma_READ_TCGA-EI-6513-01A-21R-1736-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null GSE210655_3_v_5_cisplatin_mouse RummaGEO Drug Perturbation Signatures -1.0 null CTCF_endothelial cell of umbilical vein_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_H1-hESC_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null H3K4me3_G1E_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null Acute Myeloid Leukemia_LAML_TCGA-AB-2877-03A-01T-0735-13 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null primary somatosensory cortex (area S1, areas 3,1,2)_37 yrs_M_12303 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.15647 RNF2-16625203-MESC-mouse ChEA Transcription Factor Binding Site Profiles 1.0 null colo800 TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.377 HCC1500 CCLE Cell Line Gene Expression Profiles -1.0 -1.6314 SW 403 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.979524 BICR16 DepMap CRISPR Gene Dependency 1.0 2.50885 mediodorsal nucleus of thalamus_13 yrs_F_12831 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.48529 TBL1XR1_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null RAD21_HepG2_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null Infralimbic area, layer 1 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 2.04735 Dorsal peduncular area, layer 1 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.91657 intermediate stratum of r10BI Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 2.0998 T3M4 CCLE Cell Line Gene Expression Profiles 1.0 1.39179 inferolateral temporal cortex (area TEv, area 20)_18 yrs_M_12984 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.07733 hsa-miR-3928 TargetScan Predicted Conserved microRNA Targets 1.0 0.136254 SNAI1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 27.938 PMC4960540-srep30217-s5.xls-VD_metabolism-V_VDR_Q3_VDR Rummagene Transcription Factor Associations 2026 1.0 null Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-C5-A1BJ-01A-11R-A13Y-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null UACC-257 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.30149 cerebellar cortex_21 pcw_M_12886 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.33555 Nuclear matrix COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.98 hsa-miR-548c-3p TargetScan Predicted Conserved microRNA Targets 1.0 0.541706 striatum_13 pcw_F_12834 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.24303 hippocampus (hippocampal formation)_9 pcw_M_12833 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.65031 Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-HM-A6W2-06A-22R-A33Z-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null MYC_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null H3K9me3_megakaryocyte_mm9_3 ENCODE Histone Modification Site Profiles 1.0 null ChIP_SUZ12_16625203 ESCAPE Omics Signatures of Genes and Proteins for Stem Cells 1.0 null periventricular stratum of r10Tr Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.1863 SLR25 CCLE Cell Line Gene Expression Profiles 1.0 2.49745 protein binding GO Molecular Function Annotations 2015 1.0 null Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-VS-A954-01A-11R-A38B-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null WDR89 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.19429 hsa-miR-3647-3p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.20993 CTCF_A549_hg19_5 ENCODE Transcription Factor Binding Site Profiles 1.0 null MAZ_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-28-3p TargetScan Predicted Conserved microRNA Targets 1.0 0.145356 Nucleus of the lateral lemniscus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.2964 hsa-miR-371b-5p TargetScan Predicted Conserved microRNA Targets 1.0 0.274552 SK-N-FI Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.36819 superficial stratum of PO2 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.04509 Nucleus of the lateral lemniscus, ventral part Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.34515 SUZ12-16625203-MESC-mouse ChEA Transcription Factor Binding Site Profiles 1.0 null CTCF_GM12878_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null NCI-H2135 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.06316 isthmic part of the intermediate lateral lemniscal nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.1171 Brain Lower Grade Glioma_LGG_TCGA-DU-7009-01A-11R-2027-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null KHM-1B Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.829749 KALS1 DepMap CRISPR Gene Dependency 1.0 3.43641 CTCF_LNCaP clone FGC_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-4328 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.99187 POLR2A ENCODE Transcription Factor Targets 1.0 null primary somatosensory cortex (area S1, areas 3,1,2)_12 pcw_F_13060 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.19928 RMDN1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.80291 r2 part of lateral pontine nuclei Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -3.00738 salivary gland GTEx Tissue Gene Expression Profiles -1.0 -2.10021 internal male genital organ TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.255567 pyramidal layer of taenia tecta Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.63465 CiliaryGanglion BioGPS Human Cell Type and Tissue Gene Expression Profiles 1.0 1.75937 SMC3_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_GM12872_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null LN235 DepMap CRISPR Gene Dependency 1.0 3.0771 paraterete nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.10505 MKN-45 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.46584 ZNF143 ENCODE Transcription Factor Targets 1.0 null SJSA1 DepMap CRISPR Gene Dependency 1.0 20.9491 H3K4me1_K562_hg19_2 ENCODE Histone Modification Site Profiles 1.0 null Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-C5-A1BK-01B-11R-A13Y-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null SLU7 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.10788 NCIH1651 CCLE Cell Line Gene Expression Profiles 1.0 1.40539 CTCF_SK-N-SH_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null nucleus LOCATE Predicted Protein Localization Annotations 1.0 null PcPV part of the periaqueductal gray Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.94977 Uterine Carcinosarcoma_UCS_TCGA-N6-A4VE-01A-11R-A28V-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null GATB CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.72717 intermediate stratum of r8BI Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.12874 orbital frontal cortex_21 pcw_F_12365 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.17554 GSE88819_3_v_10_tug1_mouse RummaGEO Gene Perturbation Signatures 1.0 null molecular_function GO Molecular Function Annotations 2015 1.0 null suboptic nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -2.37261 Superior olivary complex, lateral part Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.26627 male reproductive system TISSUES Experimental Tissue Protein Expression Evidence Scores 1.0 0.766457 TP63 ChEA Transcription Factor Targets 1.0 null p1B part of the periaqueductal gray Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.68803 Head and Neck squamous cell carcinoma_HNSC_TCGA-BA-A4IG-01A-11R-A266-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null SNAI3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 32.1196 TP53INP2_KO_GSE54917_384_mouse_Quadriceps muscle GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null hsa-miR-3171 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.2992 496100284_FWM_probable Alzheimer's disease_no TBI_90-94_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 3.20361 ECC10 CCLE Cell Line Gene CNV Profiles -1.0 -1.64742 primary visual cortex (striate cortex, area V1/17)_21 yrs_F_13057 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.36806 Brain Lower Grade Glioma_LGG_TCGA-E1-A7YY-01A-11R-A34R-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null INSM1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 72.375 ZNF263_HEK293_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-342-3p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.0155 Chloroplast thylakoid COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.803 MDAMB436 CCLE Cell Line Gene CNV Profiles -1.0 -1.3724 NCI-H1792 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -2.21693 Brain Lower Grade Glioma_LGG_TCGA-R8-A6ML-01A-11R-A32Q-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Femur bone mineral density x serum urate levels interaction GWAS Catalog SNP-Phenotype Associations 2025 1.0 0.752288 HS-SULTAN Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.24576 medial ganglionic eminence_8 pcw_M_13058 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.03773 HCC1954 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.939288 hsa-miR-4724-3p TargetScan Predicted Conserved microRNA Targets 1.0 0.078844 CTCF_K562_hg19_6 ENCODE Transcription Factor Binding Site Profiles 1.0 null Rectum adenocarcinoma_READ_TCGA-DC-6681-01A-11R-A32Z-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null SNU601 DepMap CRISPR Gene Dependency 1.0 2.0273 Bladder Urothelial Carcinoma_BLCA_TCGA-E7-A6MD-01A-41R-A352-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null MG63 DepMap CRISPR Gene Dependency 1.0 2.37587 TCC-PAN2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.989957 EZH2_H1-hESC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null KDM4A ENCODE Transcription Factor Targets 1.0 null CLPP_KO_GDS4791_537_mouse_testis GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null H3K9me3_H1-hESC_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null tissues, cell types and enzyme sources TISSUES Experimental Tissue Protein Expression Evidence Scores 1.0 0.766457 Gonad TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 1.0 1.227 mRNA_NR0B1_19796622 ESCAPE Omics Signatures of Genes and Proteins for Stem Cells -1.0 null H3K9me3_erythroblast_mm9_3 ENCODE Histone Modification Site Profiles 1.0 null posterior (caudal) superior temporal cortex (area 22c)_3 yrs_F_12836 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.06948 Thap11 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 33.1682 HEV_60Day_None_GSE53731 GEO Signatures of Differentially Expressed Genes for Viral Infections -1.0 -1.71807 Orbital area, medial part, layer 2 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.53751 hsa-miR-335-5p MiRTarBase microRNA Targets 1.0 null Acrosomal vesicle COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 1.211 hsa-miR-197 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.13535 ChIP_H3K27me3_17603471_mouseESC ESCAPE Omics Signatures of Genes and Proteins for Stem Cells 1.0 null Hoxd13 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 16.9843 m1AD (DM) part of periaqueductal gray Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.08529 GATA2 JASPAR Predicted Transcription Factor Targets 1.0 null hsa-miR-374a TargetScan Predicted Conserved microRNA Targets 1.0 0.175726 CTCF_fibroblast of pulmonary artery_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null NCI-H2461 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.932553 r5 part of the oral Sp5 subnucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.18497 GSE210655_3_v_4_cisplatin_mouse RummaGEO Drug Perturbation Signatures -1.0 null Sarcoma_SARC_TCGA-MB-A5Y8-01A-11R-A29R-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null PLSCR1 Pathway Commons Protein-Protein Interactions 1.0 null Lung adenocarcinoma_LUAD_TCGA-55-A494-01A-11R-A24X-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null 496100546_TCx_no dementia_no TBI_78_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 3.15025 GABPA_HepG2_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null bonemarrow BioGPS Mouse Cell Type and Tissue Gene Expression Profiles 1.0 1.05707 NCI-H2804 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.846785 ZBTB18 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 22.1521 JHH-7 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.11804 MAX ENCODE Transcription Factor Targets 1.0 null reproductive system TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.059094 H3K4me3_testis_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null Flocculus, molecular layer Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.76251 RBBP5_H1-hESC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null SRF_KO_GDS3732_148_mouse_HSC GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null ventrolateral prefrontal cortex_18 yrs_M_12984 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.0667 SMC3 ENCODE Transcription Factor Targets 1.0 null hsa-miR-1304 TargetScan Predicted Conserved microRNA Targets 1.0 0.23348 Reproductive system TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 1.0 1.227 TMEM167A CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.56988 Crus 2, molecular layer Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.00754 GSE88819_1_v_2_tug1_mouse RummaGEO Gene Perturbation Signatures -1.0 null occipital neocortex_8 pcw_M_13058 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.34851 primary visual cortex (striate cortex, area V1/17)_1 yrs_F_12830 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -0.922502 SKLU1 CCLE Cell Line Gene CNV Profiles 1.0 1.53371 HUH-7 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.829749 Paraventricular hypothalamic nucleus, parvicellular division Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.11832 hsa-miR-4268 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.965816 Supraoptic nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.01189 r10 part of solitary complex Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.1863 TGFBR2_knockout_294_GSE36778 GEO Signatures of Differentially Expressed Genes for Kinase Perturbations -1.0 -1.45323 posteroventral (inferior) parietal cortex_4 yrs_M_12298 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.37836 Head and Neck squamous cell carcinoma_HNSC_TCGA-BB-4223-01A-01R-1436-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null primary motor cortex (area M1, area 4)_30 yrs_F_12290 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.37238 CTCF_fibroblast of skin of abdomen_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_GM12865_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null 721_B_lymphoblasts BioGPS Human Cell Type and Tissue Gene Expression Profiles -1.0 -1.59239 diagonal part of septum Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.12423 496100643_TCx_no dementia_no TBI_90-94_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.55093 Lung squamous cell carcinoma_LUSC_TCGA-96-A4JK-01A-11R-A24Z-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null CTCF_MCF-7_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null Liver hepatocellular carcinoma_LIHC_TCGA-CC-A8HU-01A-11R-A36F-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null HSD17B10 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.86083 Cochlear nuclei Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.1803 SOX10 MotifMap Predicted Transcription Factor Targets 1.0 null GSE158431_2_v_0_pioglitazone_mouse RummaGEO Drug Perturbation Signatures -1.0 null CTCF_mammary epithelial cell_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null dorsal thalamus_9 pcw_M_12833 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.48285 CTCF_GM12865_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null ARVCF CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.97977 CTCF_GM12892_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Infralimbic area, layer 2/3 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.14249 MDA-MB-361 COSMIC Cell Line Gene CNV Profiles 1.0 3.12177 QGP1 CCLE Cell Line Gene CNV Profiles -1.0 -1.68842 SRF JASPAR Predicted Transcription Factor Targets 1.0 null hsa-miR-1246 TargetScan Predicted Conserved microRNA Targets 1.0 0.265648 Lung adenocarcinoma_LUAD_TCGA-MP-A4TA-01A-21R-A24X-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Corneal disease DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.351 dorsolateral prefrontal cortex_12 pcw_F_12960 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 0.824646 ATF3_H1-hESC_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null ERF::FIGLA JASPAR Predicted Human Transcription Factor Targets 2025 1.0 24.9607 PMC8104016-hcg-12-e002353-s006.xlsx-mTHP-1-LPS_Prom-Prom_Prom-GWAS-RefSeq_Name_1_IRF6 Rummagene Transcription Factor Associations 2026 1.0 null m1B part of the periaqueductal gray Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.25153 CTCF_mammary epithelial cell_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null Liver hepatocellular carcinoma_LIHC_TCGA-BC-A10S-01A-22R-A131-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Taenia tecta, dorsal part, layer 2 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.07046 Superior olivary complex, periolivary region Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.16124 magnocellular (medial) subparafascicular nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.62589 hippocampus (hippocampal formation)_3 yrs_M_12980 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.4877 posteroventral (inferior) parietal cortex_36 yrs_M_12302 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.04265 GSE182921_0_v_1_slit2_human RummaGEO Gene Perturbation Signatures 1.0 null lateral part of Med Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.24532 centromedian nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.1863 parvicellular interstitial nucleus of the posterior commissure Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.08976 periventricular stratum of r2Co Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.43985 CTCF_small intestine_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null lateral superior olive Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.55984 CTCF_GM12867_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null animal TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.050869 EZH2 ENCODE Transcription Factor Targets 1.0 null GSE240386,GSE242143_1_v_4_morc2_human RummaGEO Gene Perturbation Signatures 1.0 null H3K4me1_small intestine_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null CTCF_K562_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE153189_1_v_3_stat1_mouse RummaGEO Gene Perturbation Signatures 1.0 null TOV-112D Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.829749 COLO668 CCLE Cell Line Gene CNV Profiles 1.0 1.74034 CTCF_GM12868_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null ventromedial preoptic nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.08334 mantle zone of r10BI Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.71598 ZNF143_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null amygdaloid complex_3 yrs_F_12836 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.16874 GTL-16 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.08346 PrefrontalCortex BioGPS Human Cell Type and Tissue Gene Expression Profiles -1.0 -0.926888 KDM4A_H1-hESC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null GABPA_MCF-7_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null r10 basal plate Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.43232 HS746T CCLE Cell Line Gene CNV Profiles -1.0 -1.89819 hsa-miR-526a TargetScan Predicted Nonconserved microRNA Targets 1.0 1.2992 GSE191105_2_v_4_nat1_mouse RummaGEO Gene Perturbation Signatures -1.0 null GSE74251_0_v_3_decitabine_human RummaGEO Drug Perturbation Signatures 1.0 null PLEKHG4 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.35389 posterior (caudal) superior temporal cortex (area 22c)_21 pcw_F_12365 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 0.837861 Perturb_4823_KD_Chd4_SRP315519 PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations 1.0 1.97441 H3K9me3_megakaryocyte_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null MKN45 CCLE Cell Line Gene CNV Profiles -1.0 -1.46543 RNF2 ChEA Transcription Factor Targets 1.0 null CTCF_keratinocyte_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null RT4 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.1265 CTCF_MCF-7_hg19_7 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_MCF-7_hg19_5 ENCODE Transcription Factor Binding Site Profiles 1.0 null Adrenocortical carcinoma_ACC_TCGA-OR-A5JJ-01A-11R-A29S-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Liver hepatocellular carcinoma_LIHC_TCGA-G3-A25S-01A-11R-A16W-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Nr5a1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 35.8744 ChIP_H3K9me3_19884255_mouseESC ESCAPE Omics Signatures of Genes and Proteins for Stem Cells 1.0 null D423MG DepMap CRISPR Gene Dependency 1.0 2.81536 ventrolateral prefrontal cortex_3 yrs_M_12980 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.24106 hsa-miR-19a TargetScan Predicted Conserved microRNA Targets 1.0 0.111118 mRNA_TUBA1A_19796622 ESCAPE Omics Signatures of Genes and Proteins for Stem Cells -1.0 null Lung adenocarcinoma_LUAD_TCGA-86-8585-01A-11R-2403-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null MONOMAC6 CCLE Cell Line Gene CNV Profiles -1.0 -1.93342 Nucleus of Darkschewitsch Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.37121 Seminiferous epithelium TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.198 Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-C5-A7CK-01A-11R-A32P-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null EP300-20729851-FORBRAIN_MIDBRAIN_LIMB_HEART-MOUSE ChEA Transcription Factor Binding Site Profiles 1.0 null Pheochromocytoma and Paraganglioma_PCPG_TCGA-WB-A80V-01A-12R-A35L-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null r10 part of external cuneate nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.41085 hippocampus (hippocampal formation)_13 yrs_F_12831 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -0.826269 METTL25 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.36561 RAD21_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null Dorsal motor nucleus of the vagus nerve Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.07783 HCC60 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.96251 Bladder Urothelial Carcinoma_BLCA_TCGA-CF-A3MF-01A-12R-A21D-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null BE2M17 DepMap CRISPR Gene Dependency 1.0 7.82558 ARNT2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 18.0912 terete nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.09427 r5 part of A5 noradrenergic cell group Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.59454 POLR2A_MCF-7_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_GM12801_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null periventricular stratum of p1B Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.7009 CREM ChEA Transcription Factor Targets 1.0 null KYSE150 DepMap CRISPR Gene Dependency 1.0 4.616 CREB3L4 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 24.9406 SUZ12 ChEA Transcription Factor Targets 1.0 null PMC11252405-41467_2024_50426_MOESM4_ESM.xlsx-Fig_S4c-CTCF_CTCF Rummagene Transcription Factor Associations 2026 1.0 null PANC 03.27 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.08346 superficial stratum of r3Co Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.74657 cell part LOCATE Predicted Protein Localization Annotations 1.0 null hsa-miR-4251 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.55165 H2AFZ_A549_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null embryonic stem feeder layer BioGPS Mouse Cell Type and Tissue Gene Expression Profiles -1.0 -0.912775 HCC1263 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.2235 Kidney renal papillary cell carcinoma_KIRP_TCGA-B9-4617-01A-01R-1193-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Lung squamous cell carcinoma_LUSC_TCGA-33-4586-01A-01R-1443-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null AR ChEA Transcription Factor Targets 1.0 null periventricular stratum of JcPL Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.6538 induseum griseum Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 3.02056 SKM-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.50156 CTCF_endothelial cell of umbilical vein_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null r1 part of lateral pontine nuclei Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -2.85178 CTCF_A549_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_fibroblast of mammary gland_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null Orbital area, medial part, layer 2/3 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.08829 ELK1_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_GM12866_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null NCIH838 CCLE Cell Line Gene CNV Profiles 1.0 1.83469 RBPMS Pathway Commons Protein-Protein Interactions 1.0 null EFM-192B Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.03842 hsa-miR-4795-3p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.7397 ZNF143_H1-hESC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Male reproductive gland TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 1.0 1.227 SUPT11 CCLE Cell Line Gene CNV Profiles -1.0 -1.84017 pyrazinamide_mus musculus_gpl6246_gse48027 GEO Signatures of Differentially Expressed Genes for Small Molecules -1.0 null Plastid thylakoid membrane COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.825 posteroventral (inferior) parietal cortex_16 pcw_M_12837 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.21312 METTL13 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.44323 CMAH_KO_GDS4200_114_mouse_muscle GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null Bronchoalveolar stem cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.632 posteroventral (inferior) parietal cortex_21 pcw_M_12886 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.48285 H3K27me3_mammary epithelial cell_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Female reproductive system TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 1.0 1.227 hsa-miR-641 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.921135 Chromosomal deletion syndrome DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.322 paraventricular nucleus, dorsal part Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.10334 Subparafascicular area Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.51986 hsa-miR-3200-3p TargetScan Predicted Conserved microRNA Targets 1.0 0.115091 Pheochromocytoma and Paraganglioma_PCPG_TCGA-W2-A7H5-01B-11R-A35L-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Pontine gray Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.83039 CTCF_fibroblast of the aortic adventitia_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-3148 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.921135 CTCF_GM12867_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Liver hepatocellular carcinoma_LIHC_TCGA-BC-A3KG-01A-11R-A213-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Head and Neck squamous cell carcinoma_HNSC_TCGA-CR-6470-01A-11R-1873-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Male infertility DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.304 MONOMAC1 CCLE Cell Line Gene CNV Profiles -1.0 -2.15554 organelle LOCATE Predicted Protein Localization Annotations 1.0 null CTCF_fibroblast of the aortic adventitia_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE88819_1_v_4_tug1_mouse RummaGEO Gene Perturbation Signatures -1.0 null r8 portion of ambiguous motor nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.12436 r10 part of basolateral reticular formation Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.47805 BDCA4+_DentriticCells BioGPS Human Cell Type and Tissue Gene Expression Profiles -1.0 -1.06202 CTCF_H1-hESC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null mRNA_KLF4_19796622 ESCAPE Omics Signatures of Genes and Proteins for Stem Cells 1.0 null gonad TISSUES Experimental Tissue Protein Expression Evidence Scores 1.0 0.766457 CTCF_WERI-Rb-1_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null WDR24 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.5331 cellular_component LOCATE Predicted Protein Localization Annotations 1.0 null periventricular stratum of PcPL Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 2.23508 TRIM44 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.47735 H3K4me3_MCF-7_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null hsa-miR-3182 TargetScan Predicted Conserved microRNA Targets 1.0 0.099701 GSS CCLE Cell Line Gene Expression Profiles -1.0 -2.58988 cerebellar cortex_10 mos_M_12977 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.33555 amygdaloid complex_36 yrs_M_12302 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 2.28369 superficial stratum of r3Tr Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.27177 caudal ganglionic eminence_8 pcw_M_13058 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.58873 EP300 ChEA Transcription Factor Targets 1.0 null CTCF_fibroblast of gingiva_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null superficial stratum of r2BI Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -3.00517 Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-7101-01A-11R-2016-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null CTCF ENCODE Transcription Factor Targets 1.0 null whole body TISSUES Experimental Tissue Protein Expression Evidence Scores 1.0 0.766457 SJSA-1 COSMIC Cell Line Gene CNV Profiles 1.0 3.12177 Testis TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 1.0 1.227 triangular septal nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.14249 HCC-15 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.846785 OVCAR-4 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.842632 U87MG CCLE Cell Line Gene CNV Profiles -1.0 -1.71327 CTCF_fibroblast of lung_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null Spermatogonium TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.326 GSE88819_6_v_10_tug1_mouse RummaGEO Gene Perturbation Signatures 1.0 null PMC8047323-Table_2.xlsx-LPS_PMMA_T24-GeneSymbol_IRF6 Rummagene Transcription Factor Associations 2026 1.0 null Rectum adenocarcinoma_READ_TCGA-DC-6160-01A-11R-1660-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null CD34+ BioGPS Human Cell Type and Tissue Gene Expression Profiles -1.0 -1.33562 Pheochromocytoma and Paraganglioma_PCPG_TCGA-S7-A7WO-01A-11R-A35L-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null dorsolateral prefrontal cortex_21 pcw_M_12886 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.0667 endocrine gland TISSUES Experimental Tissue Protein Expression Evidence Scores 1.0 0.766457 ZBTB11 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 20.0104 OCIMY7 CCLE Cell Line Gene CNV Profiles -1.0 -1.5591 FOXC1 JASPAR Predicted Transcription Factor Targets 1.0 null HT144SKINFV1 DepMap CRISPR Gene Dependency 1.0 2.14857 HCC1162 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.30149 testis TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.444884 JUND_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-4723-3p TargetScan Predicted Conserved microRNA Targets 1.0 0.15008 SK-MEL-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.31066 animal TISSUES Experimental Tissue Protein Expression Evidence Scores 1.0 0.766457 periventricular stratum of r3Co Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.15958 EP300 ENCODE Transcription Factor Targets 1.0 null Uterine Carcinosarcoma_UCS_TCGA-N5-A4RO-01A-11R-A28V-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null MYOD1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 24.8313 CAL-120 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.951666 posteroventral (inferior) parietal cortex_19 pcw_F_12885 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 0.888311 LOVO Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.24576 hsa-miR-590-3p TargetScan Predicted Nonconserved microRNA Targets 1.0 0.843347 GSE88819_0_v_10_tug1_mouse RummaGEO Gene Perturbation Signatures 1.0 null Keratocyte TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.938 H3K9me3_Neurosphere Cultured Cells Ganglionic Eminence Derived Roadmap Epigenomics Histone Modification Site Profiles 1.0 null Lung adenocarcinoma_LUAD_TCGA-05-4424-01A-22R-1858-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Bhlha15 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 23.7587 anterior paraventricular nucleus of thalamus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.56373 GSE210655_3_v_6_cisplatin_mouse RummaGEO Drug Perturbation Signatures -1.0 null mRNA_SOX9_19796622 ESCAPE Omics Signatures of Genes and Proteins for Stem Cells 1.0 null CTCFL_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null HCC1171 CCLE Cell Line Gene Expression Profiles -1.0 -2.03756 Head and Neck squamous cell carcinoma_HNSC_TCGA-UF-A7JS-01A-11R-A34R-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null hsa-miR-4318 TargetScan Predicted Conserved microRNA Targets 1.0 0.336728 CTCF_pancreas_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null PSME2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.07722 CTCF_GM12875_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null 496100552_PCx_possible Alzheimer's disease_no TBI_95-99_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 6.26031 H3K9me3_U2OS_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null PRDM9 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 163.908 PcPL part of the periaqueductal gray Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 2.23792 PK1 CCLE Cell Line Gene CNV Profiles -1.0 -1.44299 CTCF_keratinocyte_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null SNU738 CCLE Cell Line Gene Expression Profiles 1.0 2.79873 cerebellar cortex_3 yrs_M_12980 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.9739 CTCF_fibroblast of lung_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null RCOR1 ChEA Transcription Factor Targets 1.0 null NCIH1623 CCLE Cell Line Gene Expression Profiles -1.0 -2.80834 Acute Myeloid Leukemia_LAML_TCGA-AB-2811-03B-01T-0760-13 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null SNU620 CCLE Cell Line Gene Expression Profiles -1.0 -1.90586 MAFK_HepG2_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null superficial stratum of r9BI Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.94254 CBX3_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null r2 part of anteroventral cochlear nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.90838 Vas deferens TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.188 Lung adenocarcinoma_LUAD_TCGA-MN-A4N4-01A-12R-A24X-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null GSE88819_5_v_10_tug1_mouse RummaGEO Gene Perturbation Signatures 1.0 null HDAC1 ENCODE Transcription Factor Targets 1.0 null 496100441_PCx_probable Alzheimer's disease_TBI_88_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.62452 liver BioGPS Mouse Cell Type and Tissue Gene Expression Profiles 1.0 0.826571 CTCF_epithelial cell of esophagus_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null SNU1 CCLE Cell Line Gene Expression Profiles 1.0 1.46164 r3 part of dorsal cochlear nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.15958 CTCF_fibroblast of upper leg skin_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_GM12871_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null TFAP4::ETV1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 46.2745 H3K27ac_brown adipose tissue_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null r3 part of magnocellular medial vestibular nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.14759 YY1_HepG2_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Primary B cells from cord blood Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles 1.0 1.82439 hsa-miR-4714-5p TargetScan Predicted Conserved microRNA Targets 1.0 0.303626 superficial stratum of r4Tr Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.53346 Pancreatic adenocarcinoma_PAAD_TCGA-3A-A9IC-01A-11R-A38C-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null KLF1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 95.9338 496100414_TCx_probable Alzheimer's disease_no TBI_87_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 6.45974 TBC1D16 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.32665 STAT3_MCF 10A_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null intracellular organelle LOCATE Predicted Protein Localization Annotations 1.0 null cervix uteri GTEx Tissue Gene Expression Profiles 1.0 1.09321 KMS28BM CCLE Cell Line Gene CNV Profiles -1.0 -2.07743 MYC_H1-hESC_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-3617 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.07142 NCIH889 CCLE Cell Line Gene CNV Profiles 1.0 1.34693 ACHN CCLE Cell Line Gene CNV Profiles 1.0 1.77956 HCC33 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.26706 CAKI-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.989957 TEAD4_H1-hESC_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null r4 part of cochlear sensory column Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.27177 urogenital system TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.056717 RFX4 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 17.6802 CLPP_KO_GSE40207_388_mouse_testis GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null periventricular stratum of JcPV Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.40483 CTCF_cardiac fibroblast_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CLPP_KO_GDS4791_374_mouse_Testies GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null PMC10363146-41598_2023_38681_MOESM1_ESM.pdf-421-NACC2_NACC2 Rummagene Transcription Factor Associations 2026 1.0 null gland TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.052516 REST JASPAR Predicted Human Transcription Factor Targets 2025 1.0 51.1837 Nucleus ambiguus, dorsal division Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.26854 CTCF_GM12870_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null Monobrow GWAS Catalog SNP-Phenotype Associations 2025 1.0 1.1699 GPRIN1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.70503 internal male genital organ TISSUES Experimental Tissue Protein Expression Evidence Scores 1.0 0.766457 CTCF_fibroblast of villous mesenchyme_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null RAD21_HepG2_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null CatSper complex COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.761 NR3C1-21868756-MCF10A-HUMAN ChEA Transcription Factor Binding Site Profiles 1.0 null Kidney renal clear cell carcinoma_KIRC_TCGA-CJ-4642-01B-01R-1305-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null 496100370_PCx_probable Alzheimer's disease_TBI_88_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 3.43051 CTCF_MCF-7_hg19_6 ENCODE Transcription Factor Binding Site Profiles 1.0 null r8 part of basointermediate reticular formation Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.12874 EHF JASPAR Predicted Human Transcription Factor Targets 2025 1.0 24.9757 QGP-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.72631 superficial stratum of r3BM Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.4074 posteroventral (inferior) parietal cortex_21 yrs_F_13057 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.00595 dorsolateral prefrontal cortex_40 yrs_F_12304 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 0.952509 MDAMB361 CCLE Cell Line Gene CNV Profiles 1.0 2.14805 CTCF_BE2C_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null Lung adenocarcinoma_LUAD_TCGA-NJ-A4YQ-01A-11R-A262-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null PNCK CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.68804 CTCF_H54_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_fibroblast of villous mesenchyme_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_brain microvascular endothelial cell_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null NCI-H889 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.66481 ZFAND5 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.60405 cerebellar cortex_8 yrs_M_12841 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.14953 Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-DS-A1OD-01A-11R-A14Y-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Superior olivary complex Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.13827 CTCF_fibroblast of upper leg skin_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null JUND_H1-hESC_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_NB4_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null r6 part of spinal vestibular nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.12382 CTCF_GM20000_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-3662 TargetScan Predicted Conserved microRNA Targets 1.0 0.219115 hsa-miR-576-3p TargetScan Predicted Conserved microRNA Targets 1.0 0.541706 COPS4 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.15546 Psoriasis vulgaris_Skin tissue_GSE13355 GEO Signatures of Differentially Expressed Genes for Diseases 1.0 1.53844 hsa-miR-3926 TargetScan Predicted Conserved microRNA Targets 1.0 1.45615 Adrenocortical carcinoma_ACC_TCGA-OR-A5J8-01A-11R-A29S-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null amygdaloid complex_4 mos_M_12296 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.95913 POLR2A_MCF-7_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Mesothelioma_MESO_TCGA-TS-A7PB-01A-11R-A34F-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null hsa-miR-4317 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.809003 HN Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.979524 superficial stratum of r5BL Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.28816 HDAC1_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null ES-WA7 Cells Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles -1.0 -1.28299 RT-112 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.74788 Body size at age 10 GWAS Catalog SNP-Phenotype Associations 2025 1.0 0.804576 colo857 TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.852 JcPV part of the periaqueductal gray Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.40631 Hemispheric regions Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.01557 r3 part of cochlear sensory column Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.51972 CTCF_choroid plexus epithelial cell_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null primary auditory cortex (core)_8 yrs_M_12841 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 0.914821 Brain Lower Grade Glioma_LGG_TCGA-QH-A6X9-01A-12R-A32Q-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null posterior paraventricular nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.55866 HDAC2_H1-hESC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Lateral reticular nucleus, parvicellular part Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.2077 hsa-miR-4310 TargetScan Predicted Conserved microRNA Targets 1.0 0.632343 Brain Lower Grade Glioma_LGG_TCGA-E1-A7Z3-01A-11R-A34R-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null VMRC-LCD Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.04151 CHD1 ENCODE Transcription Factor Targets 1.0 null CTCF_GM12873_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-6942-01A-21R-2016-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null iPS-20b Cells Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles 1.0 1.05826 JVM3 CCLE Cell Line Gene CNV Profiles 1.0 1.53155 hsa-miR-4649-3p TargetScan Predicted Conserved microRNA Targets 1.0 0.136254 superficial stratum of r4BI Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -2.08164 Head and Neck squamous cell carcinoma_HNSC_TCGA-BA-A6DA-01A-31R-A31N-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null semen TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.510599 IOMMLEE CCLE Cell Line Gene Expression Profiles 1.0 1.89392 TET2_KO_GDS4287_429_mouse_LSK - bone marrow progenitor population GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null CTCF_K562_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null Lung squamous cell carcinoma_LUSC_TCGA-37-5819-01A-01R-1635-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null CTCF_A549_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null SKNMC DepMap CRISPR Gene Dependency 1.0 4.07833 mantle zone of DgSe Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.1227 NCIH1385 CCLE Cell Line Gene CNV Profiles 1.0 1.46698 estradiol_oncorhynchus mykiss_gpl2096_gse5643 GEO Signatures of Differentially Expressed Genes for Small Molecules -1.0 null NURR1 MotifMap Predicted Transcription Factor Targets 1.0 null Azoospermia DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.149 H3K9me3_skeletal muscle myoblast_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null KRAS CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.40218 PBX1 ChEA Transcription Factor Targets 1.0 null KPNYS DepMap CRISPR Gene Dependency 1.0 2.14375 CTV1DM DepMap CRISPR Gene Dependency 1.0 2.29519 intermediate stratum of r9BI Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.86885 primary auditory cortex (core)_36 yrs_M_12302 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.22269 Pheochromocytoma and Paraganglioma_PCPG_TCGA-S7-A7WN-01A-12R-A35L-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null PHOX2B-30127528-KELLY-HUMAN-BRAINNEUROBLASTOMA ChEA Transcription Factor Targets 2022 1.0 null ELF1_GM12878_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null A388 DepMap CRISPR Gene Dependency 1.0 2.41068 Brain Lower Grade Glioma_LGG_TCGA-WH-A86K-01A-11R-A36H-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null hsa-miR-802 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.965816 TEAD4 ENCODE Transcription Factor Targets 1.0 null CLPP_KO_GDS4791_107_mouse_heart GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null vertical nucleus of the diagonal band Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.27424 paraventricular nucleus, peduncular or principal part Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.01775 CTCF_GM12864_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null HES6 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 28.7174 H2AFZ_H1-hESC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Liver hepatocellular carcinoma_LIHC_TCGA-FV-A496-01A-11R-A266-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null E2F6_H1-hESC_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null r7 part of cochlear column Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.06591 CTCF_GM10266_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null NCIH1993 DepMap CRISPR Gene Dependency 1.0 2.87236 Sperm flagellum TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.41 JHOS4 CCLE Cell Line Gene CNV Profiles -1.0 -1.45492 hsa-miR-519b-5p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.20993 GSE264621_1_v_3_secretin_human RummaGEO Drug Perturbation Signatures 1.0 null KMS-28PE Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.52806 H3K9me3_G1E_mm9_2 ENCODE Histone Modification Site Profiles 1.0 null hsa-miR-518d-5p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.2992 CTCF_HCT116_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE153064,GSE153065_1_v_0_hdac3_mouse RummaGEO Gene Perturbation Signatures -1.0 null CTCF_fibroblast of gingiva_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_kidney epithelial cell_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null mediodorsal nucleus of thalamus_1 yrs_F_12830 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.55955 CHD7_H1-hESC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Pancreatic adenocarcinoma_PAAD_TCGA-IB-A6UG-01A-32R-A33R-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null mantle zone of r5Co Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.13658 E2F6 ENCODE Transcription Factor Targets 1.0 null 496100653_PCx_probable Alzheimer's disease_no TBI_82_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 4.06311 CTCF_epithelial cell of proximal tubule_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE153064,GSE153065_1_v_2_hdac3_mouse RummaGEO Gene Perturbation Signatures -1.0 null superficial stratum of r5Co Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.7584 mantle zone of r9BI Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.84481 496100458_FWM_no dementia_no TBI_88_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 3.02265 HCC515 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.36543 hsa-miR-2116 TargetScan Predicted Conserved microRNA Targets 1.0 0.119151 SNU1033 DepMap CRISPR Gene Dependency 1.0 3.46256 Pancreatic adenocarcinoma_PAAD_TCGA-IB-AAUT-01A-11R-A37L-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null CTCF_cardiac muscle cell_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null ATF3 ENCODE Transcription Factor Targets 1.0 null CLPP_KO_GDS4791_104_mouse_testis GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null HUP-T3 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.39372 RAD21_H1-hESC_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null SKRC20 CCLE Cell Line Gene Expression Profiles 1.0 1.49931 Purkinje cell layer of CbHCx Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.07622 H3K4me3_ES-Bruce4_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null microcellular tegmental nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.5241 r3 part of trigeminal transition zone Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.02848 G122 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.979524 gonad TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.418099 NFKB2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 37.7897 PAX3_Knock-in_GDS3331_598_mouse_Palatal shelves (E14.5 embryos - palate) GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null NCIH2106 CCLE Cell Line Gene CNV Profiles -1.0 -1.32698 Lung squamous cell carcinoma_LUSC_TCGA-66-2759-01A-01R-0851-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null PECAPJ34CLONEC12 DepMap CRISPR Gene Dependency 1.0 2.64797 posterior (caudal) superior temporal cortex (area 22c)_30 yrs_F_12290 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.80261 Bladder Urothelial Carcinoma_BLCA_TCGA-FD-A5BZ-01A-11R-A28M-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null HES7 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 24.6523 CTCF_HCT116_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null Paraflocculus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.50676 Nuclear meiotic cohesin complex COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 1.78 CTCF_astrocyte of the spinal cord_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Nr2e1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 24.9897 hsa-miR-4303 TargetScan Predicted Conserved microRNA Targets 1.0 0.115091 Brain Lower Grade Glioma_LGG_TCGA-HT-7601-01A-11R-2090-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null H2AFZ_osteoblast_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_skin fibroblast_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null medial (magnocellular) part of MD Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.31289 CTCF_K562_hg19_5 ENCODE Transcription Factor Binding Site Profiles 1.0 null H3K4me3_MCF-7_hg19_2 ENCODE Histone Modification Site Profiles 1.0 null H3K27me3_ES-Bruce4_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null periventricular stratum of r7Co Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.08567 EBC-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.4167 Septohippocampal nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 2.357 DBH_KO_GDS4324_362_mouse_Embryonic heart E10.5 GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null RBPJ-21746931-IB4-LCL-HUMAN ChEA Transcription Factor Binding Site Profiles 1.0 null superficial stratum of isLim Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.05187 CTCF_MCF-7_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null Medial septal nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.22113 GABPA ENCODE Transcription Factor Targets 1.0 null anterior (rostral) cingulate (medial prefrontal) cortex_13 pcw_M_12888 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 0.84356 CTCF_choroid plexus epithelial cell_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE241701_4_v_3_daxx_mouse RummaGEO Gene Perturbation Signatures 1.0 null EZH2_T-cell acute lymphoblastic leukemia_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null dorsolateral prefrontal cortex_13 pcw_M_12888 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.06112 MAPK12 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.61914 GSE183994_3_v_0_scml2_mouse RummaGEO Gene Perturbation Signatures 1.0 null P3HR1 CCLE Cell Line Gene Expression Profiles 1.0 1.55323 Skin BioGPS Human Cell Type and Tissue Gene Expression Profiles 1.0 1.24175 CTCF_GM13976_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Spz1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 19.3333 shell part of the anterobasal nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -2.00251 GSE112202_5_v_2_digoxin_human RummaGEO Drug Perturbation Signatures -1.0 null Brain Lower Grade Glioma_LGG_TCGA-HT-A5RB-01A-11R-A28M-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null RBPJ ChEA Transcription Factor Targets 1.0 null PMC8437976-41416_2021_1470_MOESM2_ESM.xls-List_of_MAF_in_SNP_Rectum-Hugo_Symbol_MAF Rummagene Transcription Factor Associations 2026 1.0 null CTCF_GM12864_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null tissues, cell types and enzyme sources TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.050762 GSE85880,GSE85881_4_v_1_tretinoin_human RummaGEO Drug Perturbation Signatures -1.0 null CCDC28A CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.14572 MDAMB361 DepMap CRISPR Gene Dependency 1.0 2.33161 Outer dense fiber COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.827 CTCF_fibroblast of pulmonary artery_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null striatum_12 pcw_F_13060 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -0.974039 Stromal dystrophy DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.937 FLI1::DRGX JASPAR Predicted Human Transcription Factor Targets 2025 1.0 22.5271 NCIH508 CCLE Cell Line Gene Expression Profiles 1.0 1.78382 HDAC2_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null superficial stratum of r6Ve Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.12436 BICR18 CCLE Cell Line Gene Expression Profiles 1.0 1.43699 rostral periolivary nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.1377 MDST8 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.16657 CTCFL_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null mRNA_ZFP42_19618472 ESCAPE Omics Signatures of Genes and Proteins for Stem Cells -1.0 null Rhomboid nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.02647 MDAMB415 DepMap CRISPR Gene Dependency 1.0 4.29753 CTCF_IMR-90_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Chloroplast thylakoid membrane COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.827 dorsal juxtacommissural pretectal nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.02213 CTCF_GM12878_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_A549_hg19_8 ENCODE Transcription Factor Binding Site Profiles 1.0 null U-2 OS Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.03842 ASCL5 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.03841 MAZ ENCODE Transcription Factor Targets 1.0 null MDA-MB-436 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -2.27109 PMC8104016-hcg-12-e002353-s006.xlsx-mTHP-1-LPS_Prom-Distal-RefSeq_Name_IRF6 Rummagene Transcription Factor Associations 2026 1.0 null PMC5358377-pnas.1615015114.sd02.xlsx-Sheet1-Genes_with_VDR_elements_only_control_VDR Rummagene Transcription Factor Associations 2026 1.0 null 496100481_PCx_no dementia_no TBI_88_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.91722 IQSEC2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.63768 primary somatosensory cortex (area S1, areas 3,1,2)_12 pcw_F_12960 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 0.83221 r9 part of paragigantocellular nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.94496 nucleus of the central acoustic tract Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.26028 TUHR10TKB CCLE Cell Line Gene Expression Profiles -1.0 -1.68996 SLC41A3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.57976 CTCF_astrocyte of the cerebellum_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null ES5 DepMap CRISPR Gene Dependency 1.0 4.12847 SRC-2_Deficiency_GDS5087_270_mouse_Heart GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null hsa-miR-3065-5p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.7397 Cauda epididymis TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.359 496100638_FWM_no dementia_TBI_95-99_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.12187 MAX_MCF-7_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null HGC-27 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.03842 male reproductive gland TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.264353 CTCF_cardiac muscle cell_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null GTF2F1 ENCODE Transcription Factor Targets 1.0 null hsa-miR-3183 TargetScan Predicted Conserved microRNA Targets 1.0 0.15008 GSE88819_1_v_12_tug1_mouse RummaGEO Gene Perturbation Signatures -1.0 null dorsolateral isthmic part of the dorsal raphe nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.30257 CD56+_NKCells BioGPS Human Cell Type and Tissue Gene Expression Profiles -1.0 -1.1955 CTCF_MCF-7_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null Male reproductive system TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 1.0 1.227 H3K9me3_erythroblast_mm9_2 ENCODE Histone Modification Site Profiles 1.0 null HUH-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.52904 male reproductive gland TISSUES Experimental Tissue Protein Expression Evidence Scores 1.0 0.766457 Paramedian lobule Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.00879 CTCF_HeLa-S3_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null COLO-783 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.52904 pyramidal layer of IG Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 3.02778 L1236 CCLE Cell Line Gene Expression Profiles -1.0 -2.05078 KMS-34 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -3.31023 CTCF_HGPS cell_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null YY1 JASPAR Predicted Transcription Factor Targets 1.0 null hsa-miR-3190 TargetScan Predicted Conserved microRNA Targets 1.0 0.115091 UPCISCC152 DepMap CRISPR Gene Dependency 1.0 2.23171 Brain Lower Grade Glioma_LGG_TCGA-DU-A7TC-01A-21R-A34R-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null PAX3-FKHR-20663909-RHABDOMYOSARCOMA-HUMAN ChEA Transcription Factor Binding Site Profiles 1.0 null OCILY10 CCLE Cell Line Gene Expression Profiles 1.0 1.76674 amygdaloid complex_15 yrs_M_12299 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -0.899281 MYC_MCF-7_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null POLR2A_MCF-7_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_BJ_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null inferolateral temporal cortex (area TEv, area 20)_13 pcw_M_12888 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.20335 CTCF_HCT116_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null reproductive system TISSUES Experimental Tissue Protein Expression Evidence Scores 1.0 0.766457 Lung adenocarcinoma_LUAD_TCGA-86-7955-01A-11R-2187-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null TP73 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 17.6401 CAPAN2 CCLE Cell Line Gene CNV Profiles -1.0 -1.36559 MYC JASPAR Predicted Human Transcription Factor Targets 2025 1.0 24.3557 posterior (caudal) superior temporal cortex (area 22c)_37 yrs_M_12303 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.81143 posteroventral (inferior) parietal cortex_10 mos_M_12977 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.0022 TAL1-30185409-HPC-MOUSE-BONEMARROW-LEUKEMIA ChEA Transcription Factor Targets 2022 1.0 null Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-A6JT-01A-11R-A31N-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Bladder Urothelial Carcinoma_BLCA_TCGA-C4-A0F7-01A-11R-A084-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null CTCF_keratinocyte_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null ChIP_RNF2_16625203 ESCAPE Omics Signatures of Genes and Proteins for Stem Cells 1.0 null OVK18 CCLE Cell Line Gene Expression Profiles -1.0 -2.21751 FFAR4_KO_GDS4811_507_mouse_adipose GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null mantle zone of the IG Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 3.02056 binding GO Molecular Function Annotations 2015 1.0 null CTCF_GM12878_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null H3K9me3_H1 Roadmap Epigenomics Histone Modification Site Profiles 1.0 null Teratocarcinoma DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.283 Dhori Virus_12Hour_20090954_GSE17400 GEO Signatures of Differentially Expressed Genes for Viral Infections 1.0 1.43325 superficial stratum of DgSe Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.41386 P3HR1 CCLE Cell Line Gene CNV Profiles 1.0 1.3987 r2 part of dorsal cochlear nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.44044 mantle zone of r4Co Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.27267 C3A Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.980029 ML-2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.74788 hsa-miR-548u TargetScan Predicted Nonconserved microRNA Targets 1.0 0.965816 CAPAN-2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.2235 Head and Neck squamous cell carcinoma_HNSC_TCGA-CN-6992-01A-11R-1915-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Dorsal tegmental nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.31289 Lung squamous cell carcinoma_LUSC_TCGA-85-8354-01A-31R-2326-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null HUH28 CCLE Cell Line Gene Expression Profiles 1.0 1.4952 1321-N1 cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.73 r10 part of basomedial reticular formation Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.08829 striatum_24 pcw_M_12288 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -0.998735 H3K9me3_A549_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null GSE213442_1_v_0_kpna2_mouse RummaGEO Gene Perturbation Signatures 1.0 null breast GTEx Tissue Gene Expression Profiles 1.0 1.39273 ELF1 ENCODE Transcription Factor Targets 1.0 null hsa-miR-2054 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.7397 NKX2-2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 23.633 hsa-miR-935 TargetScan Predicted Conserved microRNA Targets 1.0 0.175726 lung GTEx Tissue Gene Expression Profiles -1.0 -1.03483 periventricular stratum of m1AD Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.08229 DBH_KO_GSE33906_53_mouse_heart (E10.5) GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null HCC1493 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.0425 ASPC-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.829749 E2F3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 33.9319 anterior (rostral) cingulate (medial prefrontal) cortex_13 yrs_F_12831 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.05005 SMC3_HepG2_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Spinal nucleus of the trigeminal, oral part, ventrolateral part Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.21899 CTCF_K562_hg19_7 ENCODE Transcription Factor Binding Site Profiles 1.0 null r1 part of intermediate nucleus of the lateral lemniscus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -2.18902 ERI2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.60162 SKMEL28 CCLE Cell Line Gene CNV Profiles -1.0 -1.63508 CTCFL ENCODE Transcription Factor Targets 1.0 null EFM-19 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.83299 thyroid BioGPS Mouse Cell Type and Tissue Gene Expression Profiles 1.0 1.00925 ventrolateral prefrontal cortex_37 yrs_M_12303 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -0.841962 GSE127970_2_v_0_ebf1_mouse RummaGEO Gene Perturbation Signatures -1.0 null ZNF93 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 154.995 Brain Lower Grade Glioma_LGG_TCGA-DU-A7TA-01A-11R-A33Z-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null 496100334_PCx_probable Alzheimer's disease_no TBI_79_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 3.89417 superficial stratum of r8Lim Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.12493 intermediate part of r10B Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.71598 hippocampus (hippocampal formation)_40 yrs_F_12304 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.67003 CTCF_HepG2_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null HCC1428 CCLE Cell Line Gene CNV Profiles 1.0 1.60705 CTCF_epithelial cell of proximal tubule_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null NCIH322 CCLE Cell Line Gene Expression Profiles 1.0 2.46736 liminal reticular formation of m2 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.08156 18614019-TableS4c GeneSigDB Published Gene Signatures 1.0 null MHH-ES-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.2433 H3K9me3_G1E-ER4_mm9_2 ENCODE Histone Modification Site Profiles 1.0 null ZNF385C CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.67873 NHLH2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 87.8159 H3K9me3_fibroblast of lung_hg19_2 ENCODE Histone Modification Site Profiles 1.0 null HT-115 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.2433 ELK1 ENCODE Transcription Factor Targets 1.0 null UBB_KO_GDS3906_496_mouse_Testis - 28 Days GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null Nucleus ambiguus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.37867 CTCF_spleen_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null female reproductive gland TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.057561 HARA CCLE Cell Line Gene CNV Profiles 1.0 2.36419 H3K4me1_testis_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null Liver hepatocellular carcinoma_LIHC_TCGA-CC-A7IK-01A-12R-A33R-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null SCA7_Knock-in_GDS3545_560_mouse_Cerebellum GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null PMC6187090-mmc1.xlsx-TP53_positive-Symbol_TP53 Rummagene Transcription Factor Associations 2026 1.0 null MAZ_HepG2_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null EP300_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-1299 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.7397 Paraventricular hypothalamic nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.04973 CTCF_HepG2_hg19_6 ENCODE Transcription Factor Binding Site Profiles 1.0 null Stat6 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 39.2802 496100498_PCx_dementia_TBI_85_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 3.11874 HCC2911 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.3501 CREM-20920259-GC1-SPG-MOUSE ChEA Transcription Factor Binding Site Profiles 1.0 null Prelimbic area, layer 2/3 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.48108 RCOR1-19997604-NEURONS-MOUSE ChEA Transcription Factor Binding Site Profiles 1.0 null orbital frontal cortex_16 pcw_M_12837 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -0.912411 KM12 CCLE Cell Line Gene CNV Profiles 1.0 1.45595 mantle zone of r10BL Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.47805 SNF8 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.08996 LPIN1_OE_GDS2291_587_mouse_Liver GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null KM-12 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 2.28433 NR3C1 ChEA Transcription Factor Targets 1.0 null r3 part of anteroventral cochlear nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.74657 RCM-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.989957 superficial stratum of THyB-D Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.56793 rostral interstitial nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.02647 CTCF_B cell_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null SNU8 CCLE Cell Line Gene Expression Profiles 1.0 1.41006 NCOA2_KO_GDS5087_24_mouse_heart GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null urogenital system TISSUES Experimental Tissue Protein Expression Evidence Scores 1.0 0.766457 Nucleus of the lateral lemniscus, horizontal part Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.85697 COLO704 CCLE Cell Line Gene Expression Profiles -1.0 -1.50507 ventrolateral prefrontal cortex_13 pcw_M_12888 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 2.17723 primary somatosensory cortex (area S1, areas 3,1,2)_23 yrs_M_12300 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -2.80301 lateral part of r10B Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.47653 MDFI Pathway Commons Protein-Protein Interactions 1.0 null hsa-miR-136 TargetScan Predicted Conserved microRNA Targets 1.0 0.099701 Testicular somatic cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.662 submedius thalamic nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.17272 mRNA_TCEA3_19796622 ESCAPE Omics Signatures of Genes and Proteins for Stem Cells 1.0 null hsa-miR-485-3p TargetScan Predicted Conserved microRNA Targets 1.0 0.219115 496100497_FWM_no dementia_TBI_95-99_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 4.65227 Entorhinal area, medial part, ventral zone, layer 1 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.19826 HCC202 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.889132 BHY CCLE Cell Line Gene CNV Profiles 1.0 1.87868 KDM5B ENCODE Transcription Factor Targets 1.0 null SW626 DepMap CRISPR Gene Dependency 1.0 3.85527 ADIPOR1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.44085 CTCF_Caco-2_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null mRNA_EED_19796622 ESCAPE Omics Signatures of Genes and Proteins for Stem Cells 1.0 null primary visual cortex (striate cortex, area V1/17)_23 yrs_M_12300 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.90005 CTCF_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null H3K9me3_erythroblast_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null EJM Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.934532 U266B1 CCLE Cell Line Gene Expression Profiles 1.0 2.07413 CTCF_foreskin fibroblast_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null SARM_KO_GDS4842_411_mouse_brain GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null NFKB1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 34.8861 intermediate isthmic part of the dorsal raphe nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.03657 GSE157960_2_v_3_progesterone_mouse RummaGEO Drug Perturbation Signatures -1.0 null 496100550_TCx_no dementia_TBI_87_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.96854 H3K4me1_brown adipose tissue_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null SK-MEL-28 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.75765 testis TISSUES Experimental Tissue Protein Expression Evidence Scores 1.0 0.766457 CHD7 ENCODE Transcription Factor Targets 1.0 null CTCF_A549_hg19_7 ENCODE Transcription Factor Binding Site Profiles 1.0 null PANC0327 CCLE Cell Line Gene CNV Profiles -1.0 -1.37166 PPARG-20887899-3T3-L1 PREADIPOCYTE CELLS-MOUSE ChEA Transcription Factor Binding Site Profiles 1.0 null RUNX2 JASPAR Predicted Transcription Factor Targets 1.0 null H3K4me3_G1E_mm9_2 ENCODE Histone Modification Site Profiles 1.0 null CTCF_fibroblast of dermis_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Linear nucleus of the medulla Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.00136 PMC12717993-MEC-34-e17796-s002.xlsx-ST12_WGS_RFMix_genes_2_anc-Unnamed_14_KLF6 Rummagene Transcription Factor Associations 2026 1.0 null MDFI Hub Proteins Protein-Protein Interactions 1.0 null CTCF_GM10248_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_endothelial cell of umbilical vein_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null VAT1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.7818 primary auditory cortex (core)_13 yrs_F_12831 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.02778 CTCF_GM12869_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_GM12871_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null Lung squamous cell carcinoma_LUSC_TCGA-L3-A524-01A-11R-A262-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null 496100549_FWM_no dementia_TBI_87_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 3.91105 SKNAS DepMap CRISPR Gene Dependency 1.0 2.44512 UACC257 CCLE Cell Line Gene CNV Profiles -1.0 -1.39662 H3K4me3_ES-E14_mm9_2 ENCODE Histone Modification Site Profiles 1.0 null DDX4 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.8463 primary auditory cortex (core)_40 yrs_F_12304 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.20335 NCIH1694 CCLE Cell Line Gene Expression Profiles -1.0 -1.47088 PPARG ChEA Transcription Factor Targets 1.0 null Paraventricular hypothalamic nucleus, parvicellular division, anterior parvicellular part Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.18182 hsa-miR-522 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.809003 TCF12_H1-hESC_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null SJSA1 CCLE Cell Line Gene CNV Profiles 1.0 3.2803 TUHR14TKB CCLE Cell Line Gene Expression Profiles -1.0 -1.93738 H3K4me1_ES-Bruce4_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null CTCF_HEK293_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null MDA-MB-361 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 2.01847 Skin Cutaneous Melanoma_SKCM_TCGA-D3-A1Q9-06A-11R-A18T-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null mantle zone of r2Co Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.83154 CTCF_GM12865_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null OSR2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 28.33 ventrolateral periolivary nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.46274 superficial stratum of TTe Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.63465 Nucleus of the lateral lemniscus, dorsal part Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.04879 ZBED2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 16.5783 CTCF_GM12875_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null CLPP_KO_GSE40207_378_mouse_Testies GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null CTCF_GM06990_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Posterior amorphous corneal dystrophy DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 2.856 NCI-H1666 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.988927 SLC5A2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.10898 Dorsal nucleus raphe Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.22572 CTCF_fibroblast of lung_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null PMC8046804-41467_2021_22478_MOESM11_ESM.xlsx-Del_AA-TCGA-Unnamed_42_TEAD1 Rummagene Transcription Factor Associations 2026 1.0 null intermediate stratum of r3Ve Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.14868 H3K4me3_megakaryocyte_mm9_2 ENCODE Histone Modification Site Profiles 1.0 null dexamethasone_homo sapiens_gpl6244_gse20963 GEO Signatures of Differentially Expressed Genes for Small Molecules 1.0 null Lung adenocarcinoma_LUAD_TCGA-55-5899-01A-11R-1628-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Infralimbic area, layer 2 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.39248 CL-40 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.46878 Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-DS-A3LQ-01A-21R-A21T-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null CTCF_retinal pigment epithelial cell_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null r2 part of cochlear sensory column Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.83039 HUPT4 CCLE Cell Line Gene CNV Profiles 1.0 1.85461 ELF1_MCF-7_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null r3 part of lateral pontine nuclei Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -2.30489 COLO 699 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.053 CTCF_HepG2_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-591 TargetScan Predicted Conserved microRNA Targets 1.0 0.454769 Head and Neck squamous cell carcinoma_HNSC_TCGA-BB-7861-01A-11R-2232-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Ventral cochlear nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.38919 retrotrapezoid nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.47457 CTCF_GM12873_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null ZNF263 ENCODE Transcription Factor Targets 1.0 null Acute Myeloid Leukemia_LAML_TCGA-AB-3001-03A-01T-0736-13 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null STT3B CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.76733 KINGS1 DepMap CRISPR Gene Dependency 1.0 2.31199 GABPA_H1-hESC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Rectum adenocarcinoma_READ_TCGA-EI-6885-01A-11R-1928-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null 496100613_TCx_possible Alzheimer's disease_TBI_90-94_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.10713 H3K9me3_Brain Germinal Matrix Roadmap Epigenomics Histone Modification Site Profiles 1.0 null PMC9263655-mmc3.xlsx-ZNF436-AS1-Prediction_catRAPID_ZNF436 Rummagene Transcription Factor Associations 2026 1.0 null GSE240386,GSE242143_8_v_6_morc2_human RummaGEO Gene Perturbation Signatures 1.0 null NMCG1 CCLE Cell Line Gene Expression Profiles -1.0 -1.74187 PRRX2 JASPAR Predicted Transcription Factor Targets 1.0 null Head and Neck squamous cell carcinoma_HNSC_TCGA-D6-A6ES-01A-12R-A31N-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null B3GNT5 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.44969 CTCF_GM19238_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-4789-3p TargetScan Predicted Nonconserved microRNA Targets 1.0 0.843347 ELK4 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 24.9087 Orchitis DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.439 SNU-387 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.30149 EZH2_myotube_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_GM19239_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Paraventricular nucleus of the thalamus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.19077 CTCF_HepG2_hg19_5 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-145 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.880544 Leukemia DisGeNET Gene-Disease Associations 1.0 null H3K9me3_G1E-ER4_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null preoptic BioGPS Mouse Cell Type and Tissue Gene Expression Profiles -1.0 -1.58457 Head and Neck squamous cell carcinoma_HNSC_TCGA-MT-A7BN-01A-12R-A34R-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null ZEB1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 30.1985 CTCF_H1-hESC_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null H3K9me3_NT2-D1_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null KDM5B_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null MYC_MCF-7_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null primary visual cortex (striate cortex, area V1/17)_24 pcw_M_12288 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.76834 spleen BioGPS Mouse Cell Type and Tissue Gene Expression Profiles 1.0 1.15665 GSE210655_3_v_0_cisplatin_mouse RummaGEO Drug Perturbation Signatures -1.0 null H3K9me3_G1E_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null Granular lamina of the cochlear nuclei Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.07375 superficial stratum of r4Co Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.47279 inferolateral temporal cortex (area TEv, area 20)_4 mos_M_12296 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.50199 STAT3 ENCODE Transcription Factor Targets 1.0 null Female reproductive gland TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 1.0 1.227 Paramedian lobule, molecular layer Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.02116 hsa-miR-4668-3p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.0155 intermediate part of r9B Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.84706 CREB1 ENCODE Transcription Factor Targets 1.0 null Chromosomal disease DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.073 HS751T CCLE Cell Line Gene Expression Profiles 1.0 2.20498 MAFK ENCODE Transcription Factor Targets 1.0 null mantle zone of r10BM Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.17873 gland TISSUES Experimental Tissue Protein Expression Evidence Scores 1.0 0.766457 Nucleus of the solitary tract, gelatinous part Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.11977 retina BioGPS Human Cell Type and Tissue Gene Expression Profiles -1.0 -0.913961 MYC_MCF-7_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null REL JASPAR Predicted Human Transcription Factor Targets 2025 1.0 25.5882 NB5 DepMap CRISPR Gene Dependency 1.0 5.37103 intermediate stratum of r10BL Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.48108 hsa-miR-4480 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.843347 Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-EK-A2RJ-01A-11R-A18M-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null GSE42805,GSE42811_2_v_3_cocaine_mouse RummaGEO Drug Perturbation Signatures 1.0 null 496100415_PCx_no dementia_TBI_78_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.46604 septohypothalamic nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.13026 COLO 678 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -2.00767 Synaptonemal complex COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.822 hsa-miR-2110 TargetScan Predicted Conserved microRNA Targets 1.0 0.175726 periventricular stratum of PcPV Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.94977 posterior (caudal) superior temporal cortex (area 22c)_3 yrs_M_12980 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 3.42199 r4 part of descending trigeminal sensory nucleus, oral part Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.53346 SP3_Deficiency_GDS3058_610_mouse_Embryonic heart (day 12.5 C57Bl/6) GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null hsa-miR-4659b-3p TargetScan Predicted Conserved microRNA Targets 1.0 0.088999 PAX3 ChEA Transcription Factor Targets 1.0 null CTCF_kidney_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_fibroblast of lung_hg19_6 ENCODE Transcription Factor Binding Site Profiles 1.0 null M-1 BioGPS Mouse Cell Type and Tissue Gene Expression Profiles -1.0 -1.06464 orbital frontal cortex_13 pcw_M_12888 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.67337 HOXB2::ELK1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 16.3821 CTCF_astrocyte of the spinal cord_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-3163 TargetScan Predicted Conserved microRNA Targets 1.0 0.541706 CTCF_MCF-7_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Lung adenocarcinoma_LUAD_TCGA-55-8094-01A-11R-2241-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null ERF::NHLH1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 53.6629 superficial stratum of r2Co Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.90737 posteroventral (inferior) parietal cortex_15 yrs_M_12299 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 2.10011 496100368_PCx_probable Alzheimer's disease_no TBI_88_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.30289 superficial stratum of r10BM Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.61893 ZNF324 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 25.0566 RAD21_MCF-7_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-4725-3p TargetScan Predicted Conserved microRNA Targets 1.0 0.075559 mRNA_GADD45A_19796622 ESCAPE Omics Signatures of Genes and Proteins for Stem Cells -1.0 null GSE240386,GSE242143_1_v_6_morc2_human RummaGEO Gene Perturbation Signatures 1.0 null Prostate adenocarcinoma_PRAD_TCGA-QU-A6IM-01A-11R-A31N-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null CTCF_GM12878_hg19_5 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-3927 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.843347 HB1119 DepMap CRISPR Gene Dependency 1.0 3.19208 SLC25A44 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.10241 anterior (rostral) cingulate (medial prefrontal) cortex_12 pcw_F_12960 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.24815 r8 part of linear nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.97879 RAD21_GM12878_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null TP63-23658742-EP156T-HUMAN ChEA Transcription Factor Binding Site Profiles 1.0 null superficial stratum of r5Lim Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.42065 CLPP_KO_GSE40207_392_mouse_Testis GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null Head and Neck squamous cell carcinoma_HNSC_TCGA-UF-A7JF-01A-11R-A34R-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null r10 part of gigantocellular reticular area Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.2531 NCI-H1781 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.829749 TWIST1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 23.9722 posterodorsal tegmental nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.26081 TEF-1 MotifMap Predicted Transcription Factor Targets 1.0 null medial subhabenular nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 2.27994 Flocculus, granular layer Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.62988 hsa-miR-4659a-3p TargetScan Predicted Conserved microRNA Targets 1.0 0.088999 LHX1_NULL MUTATION - Ablation_GDS1748_748_mouse_Embryonic kidneys (from day E14.5) GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null Brain Lower Grade Glioma_LGG_TCGA-FG-8181-01A-11R-2256-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Vegetative stage TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.669 r10 part of nucleus gracilis Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.452 CTCF_kidney epithelial cell_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null periventricular stratum of isBI Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.03516 HS729 DepMap CRISPR Gene Dependency 1.0 2.15503 496100537_FWM_no dementia_TBI_87_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 3.97973 DCTN3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.02584 KMS34 CCLE Cell Line Gene CNV Profiles -1.0 -3.21049 MYC_MCF-7_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null Brain Lower Grade Glioma_LGG_TCGA-DH-A7UU-01A-12R-A34F-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Esophagus - Gastroesophageal Junction GTEx Tissue Gene Expression Profiles 2023 1.0 7.21239 Prostate adenocarcinoma_PRAD_TCGA-V1-A8WW-01A-11R-A37L-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null primary visual cortex (striate cortex, area V1/17)_13 yrs_F_12831 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.19646 Lung squamous cell carcinoma_LUSC_TCGA-85-A512-01A-11R-A26W-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null KDM6B CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.48368 membrane-bounded organelle LOCATE Predicted Protein Localization Annotations 1.0 null hsa-miR-4271 TargetScan Predicted Conserved microRNA Targets 1.0 0.075559 RRP9 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.32243 CTCF_GM06990_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null Liver hepatocellular carcinoma_LIHC_TCGA-BC-A10U-11A-11R-A131-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null CHD2 ENCODE Transcription Factor Targets 1.0 null UMC-11 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.0425 CTCF_GM12866_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null superior periolivary nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.39532 NUGC-4 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.982057 Corneal dystrophy DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.659 PMC8104016-hcg-12-e002353-s006.xlsx-mTHP-1-LPS_Prom-Prom_Prom-GWAS-RefSeq_Name_IRF6 Rummagene Transcription Factor Associations 2026 1.0 null JcPL part of the periaqueductal gray Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.6538 r10 part of the inferior olive Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.68255 Liver hepatocellular carcinoma_LIHC_TCGA-FV-A23B-11A-11R-A16W-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null ZNF134 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.514 estradiol_homo sapiens_gpl570_gds3283 GEO Signatures of Differentially Expressed Genes for Small Molecules 1.0 null pineal_day BioGPS Human Cell Type and Tissue Gene Expression Profiles -1.0 -0.824361 hsa-miR-376c TargetScan Predicted Nonconserved microRNA Targets 1.0 1.55165 mantle zone of r3Co Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.51847 RBBP5 ENCODE Transcription Factor Targets 1.0 null ATM_KD_GSE54268_662_human_MCF-10A GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null H3K9me3_G1E_mm9_3 ENCODE Histone Modification Site Profiles 1.0 null SRC-2_KO_GDS5087_485_mouse_Heart GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null NCI-H196 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 3.19125 orbital frontal cortex_15 yrs_M_12299 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.1047 orbital frontal cortex_4 mos_M_12296 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.1047 CTCF_A549_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null MTF1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 34.9833 CTCF_fibroblast of skin of abdomen_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-3680 TargetScan Predicted Conserved microRNA Targets 1.0 0.90397 r5 part of posteroventral cochlear nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.75721 CTCF_GM19240_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null ABC-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.929057 Synaptonemal structure COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.815 ZBTB26 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 30.4548 Ovary BioGPS Human Cell Type and Tissue Gene Expression Profiles 1.0 1.0926 NCI-H1092 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.934532 male reproductive system TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.216126 Acute Myeloid Leukemia_LAML_TCGA-AB-2975-03A-01T-0734-13 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null GSE162688_1_v_2_pink1_mouse RummaGEO Gene Perturbation Signatures -1.0 null PC-9 cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.599 MYCN JASPAR Predicted Human Transcription Factor Targets 2025 1.0 23.442 Cochlear nucleus, subpedunclular granular region Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.40054 H3K9me3_megakaryocyte_mm9_2 ENCODE Histone Modification Site Profiles 1.0 null CHD2_HepG2_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-891b TargetScan Predicted Conserved microRNA Targets 1.0 0.09606 Brain Lower Grade Glioma_LGG_TCGA-S9-A6UA-01A-12R-A33Z-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Lung adenocarcinoma_LUAD_TCGA-49-4490-01A-21R-1858-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null CREB1_H1-hESC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CPD CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.6794 A704 CCLE Cell Line Gene CNV Profiles 1.0 1.44795 BHLHE40_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-G8-6909-01A-11R-2213-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null H3K9me3_CD14-positive monocyte_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null CTCF_fibroblast of lung_hg19_5 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_T-cell acute lymphoblastic leukemia_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-519c-5p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.20993 hsa-miR-548s TargetScan Predicted Nonconserved microRNA Targets 1.0 0.809003 r7 part of the dorsal cochlear nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.08567 Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-Q1-A73Q-01A-21R-A32P-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null GSE153189_1_v_3_interferon gamma_mouse RummaGEO Drug Perturbation Signatures 1.0 null r5 part of ventral lateral lemniscal nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.60936 Kidney renal papillary cell carcinoma_KIRP_TCGA-DW-5560-01A-01R-1592-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null hsa-miR-204 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.880544 EFO21 CCLE Cell Line Gene CNV Profiles -1.0 -2.59443 RAD21 ENCODE Transcription Factor Targets 1.0 null PAX6 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.68869 EW22 DepMap CRISPR Gene Dependency 1.0 2.67375 NCIH1105 CCLE Cell Line Gene Expression Profiles -1.0 -1.49914 CTCF_HeLa-S3_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null Plastid thylakoid COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.797 CTCF_GM12878_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null RAD21_H1-hESC_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null 496100581_TCx_probable Alzheimer's disease_TBI_90-94_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.68815 MAX_H1-hESC_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null RMG-I Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.24576 SMARCAL1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.17038 hsa-miR-568 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.843347 CTCF_GM12873_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_fibroblast of pedal digit skin_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null Lung adenocarcinoma_LUAD_TCGA-69-7980-01A-11R-2187-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Pancreatic adenocarcinoma_PAAD_TCGA-IB-A5SO-01A-11R-A32O-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null r9 part of basomedial reticular formation Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.43232 MDA-MB-134-VI Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.957354 YY1 MotifMap Predicted Transcription Factor Targets 1.0 null NCIH196 CCLE Cell Line Gene CNV Profiles 1.0 2.05826 GSE157904_0_v_1_doxorubicin_mouse RummaGEO Drug Perturbation Signatures 1.0 null MAX_H1-hESC_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-GS-A9TV-01A-11R-A38C-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null GSE247764_5_v_2_nell2_mouse RummaGEO Gene Perturbation Signatures 1.0 null Intermediodorsal nucleus of the thalamus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.8046 hsa-miR-3677-5p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.13535 periventricular stratum of PPaA Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.01775 BHLHE40 ENCODE Transcription Factor Targets 1.0 null intracellular part LOCATE Predicted Protein Localization Annotations 1.0 null GABPA_HepG2_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Brain Lower Grade Glioma_LGG_TCGA-DU-A6S3-01A-12R-A32Q-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null MDAMB134VI CCLE Cell Line Gene CNV Profiles 1.0 1.47669 r4 part of posteroventral cochlear nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.47398 DAN-G Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.934532 hsa-miR-374b TargetScan Predicted Conserved microRNA Targets 1.0 0.17031 CTCF_A549_hg19_9 ENCODE Transcription Factor Binding Site Profiles 1.0 null U178 CCLE Cell Line Gene CNV Profiles -1.0 -1.71923 PU.1_KD_GDS2411_175_mouse_Preleukemic hematopoietic stem cells GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null superficial stratum of r5Tr Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.18497 intermediate stratum of r10BM Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.19226 DorsalRootGanglion BioGPS Human Cell Type and Tissue Gene Expression Profiles 1.0 1.06939 CTCF_BE2C_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null MYC_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-3692 TargetScan Predicted Conserved microRNA Targets 1.0 0.111118 CTCF_bronchial epithelial cell_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null SUPT1 CCLE Cell Line Gene Expression Profiles 1.0 1.76408 CTCF_bronchial epithelial cell_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null H3K27me3_Breast vHMEC Roadmap Epigenomics Histone Modification Site Profiles 1.0 null ETV2::FIGLA JASPAR Predicted Human Transcription Factor Targets 2025 1.0 39.9716 ventrolateral prefrontal cortex_1 yrs_F_12830 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.26478 Skin Cutaneous Melanoma_SKCM_TCGA-EB-A551-01A-21R-A27Q-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null SU-DHL-4 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.36963 hsa-miR-19b TargetScan Predicted Conserved microRNA Targets 1.0 0.111118 Lung adenocarcinoma_LUAD_TCGA-05-4382-01A-01R-1206-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null GSE217541,GSE217543_3_v_2_tet1_human RummaGEO Gene Perturbation Signatures -1.0 null superficial stratum of r4BM Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.24484 mantle zone of r7Co Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.06591 CTCF_keratinocyte_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null MESSA CCLE Cell Line Gene CNV Profiles 1.0 1.79162 H3K9me3_G1E-ER4_mm9_3 ENCODE Histone Modification Site Profiles 1.0 null TBL1XR1 ENCODE Transcription Factor Targets 1.0 null GSE183994_1_v_0_scml2_mouse RummaGEO Gene Perturbation Signatures 1.0 null primary motor-sensory cortex (samples)_9 pcw_M_12833 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -0.895612 ChIP_EZH2_18974828 ESCAPE Omics Signatures of Genes and Proteins for Stem Cells 1.0 null EBC1 CCLE Cell Line Gene CNV Profiles 1.0 1.74531 HCC70 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.00845 AR-19668381-PC3-HUMAN ChEA Transcription Factor Binding Site Profiles 1.0 null Congenital stromal corneal dystrophy DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.471 Tbx6 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 18.6051 Liver hepatocellular carcinoma_LIHC_TCGA-ED-A7PZ-01A-11R-A33R-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null 22RV1 DepMap CRISPR Gene Dependency 1.0 2.72077 periventricular stratum of VTTh Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.62413 Taenia tecta, dorsal part, layer 1 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.13942 BHY Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.66481 RPMI-7951 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.16657 FXR MotifMap Predicted Transcription Factor Targets 1.0 null periventricular stratum of ITTh Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.14857 female reproductive system TISSUES Experimental Tissue Protein Expression Evidence Scores 1.0 0.766457 ACHN Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.982057 periventricular stratum of m1B Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.25463 RAD21_HepG2_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE88819_1_v_8_tug1_mouse RummaGEO Gene Perturbation Signatures -1.0 null NCI-H522 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.06004 superficial stratum of r1BL Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -2.18871 CTCF_fibroblast of pedal digit skin_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CORL95 CCLE Cell Line Gene Expression Profiles -1.0 -2.09745 anterior (rostral) cingulate (medial prefrontal) cortex_10 mos_M_12977 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.75194 888 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.89561 KE97 CCLE Cell Line Gene CNV Profiles 1.0 1.36724 SUM 52PE Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.885383 PRDX6 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.54056 TCF12 ENCODE Transcription Factor Targets 1.0 null CTCF_A549_hg19_6 ENCODE Transcription Factor Binding Site Profiles 1.0 null MAX_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null superficial stratum of PHyB-V Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.10505 HCC1395 DepMap CRISPR Gene Dependency 1.0 2.49389 H3K4me3_megakaryocyte_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null Pancreatic adenocarcinoma_PAAD_TCGA-H6-A45N-11A-12R-A26U-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null RAD21_A549_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Brain Lower Grade Glioma_LGG_TCGA-HT-7695-01A-11R-2256-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null hsa-miR-3664-5p TargetScan Predicted Nonconserved microRNA Targets 1.0 0.880544 CTCF_H1-hESC_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null clone9 TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.664 GSE85880,GSE85881_4_v_2_tretinoin_human RummaGEO Drug Perturbation Signatures -1.0 null EBNA2-21746931-IB4-LCL-HUMAN ChEA Transcription Factor Binding Site Profiles 1.0 null hsa-miR-520c-5p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.2992 hsa-miR-211 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.880544 Nucleus ambiguus, ventral division Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.66507 NB6 DepMap CRISPR Gene Dependency 1.0 4.53481 POU1F1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.74068 CTCF_A549_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null UFD1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.4363 NCI-H1437 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.52904 CTCF_GM12872_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null mRNA_SALL4_19796622 ESCAPE Omics Signatures of Genes and Proteins for Stem Cells 1.0 null Brain Lower Grade Glioma_LGG_TCGA-DB-5276-01A-01R-1470-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null POLR2A_testis_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null superficial stratum of THyB-P Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.0928 HDAC2 ENCODE Transcription Factor Targets 1.0 null whole body TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.050869 GSE241701_2_v_3_daxx_mouse RummaGEO Gene Perturbation Signatures 1.0 null Adrenocortical carcinoma_ACC_TCGA-OR-A5JY-01A-31R-A29S-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null r10 part of basointermediate reticular formation Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 2.26324 Paraflocculus, granular layer Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.40001 superficial stratum of the IG Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 3.02778 posterior (caudal) superior temporal cortex (area 22c)_13 pcw_M_12888 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.33834 hsa-miR-942 TargetScan Predicted Conserved microRNA Targets 1.0 1.26663 EBF1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 41.1529 CTCF_GM12872_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null H3K27ac_testis_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null H3K27me3_bronchial epithelial cell_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE88819_7_v_10_tug1_mouse RummaGEO Gene Perturbation Signatures 1.0 null PRMT3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.05195 YY1 ENCODE Transcription Factor Targets 1.0 null MXI1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 14.7076 NCIH2122 CCLE Cell Line Gene Expression Profiles 1.0 1.60332 RAD21_H1-hESC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Liver hepatocellular carcinoma_LIHC_TCGA-4R-AA8I-01A-11R-A38B-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null H2AFZ_A549_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null Liver hepatocellular carcinoma_LIHC_TCGA-GJ-A6C0-01A-12R-A311-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null hippocampus (hippocampal formation)_21 pcw_F_12365 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -0.879449 PSMC3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.10003 HUH1 CCLE Cell Line Gene Expression Profiles -1.0 -1.6479 H3K27me3_liver_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null embryonic stem no feeder BioGPS Mouse Cell Type and Tissue Gene Expression Profiles -1.0 -1.23875 DU4475 CCLE Cell Line Gene Expression Profiles 1.0 1.93658 CTCF_fibroblast of foreskin _hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null anterior (rostral) cingulate (medial prefrontal) cortex_3 yrs_M_12980 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.18448 TM31 CCLE Cell Line Gene Expression Profiles -1.0 -3.20746 MDA-MB-157 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -2.07724 KMS-28BM Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.50212 CTCF_HepG2_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null COLO678 CCLE Cell Line Gene CNV Profiles -1.0 -2.35079 537 MEL Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.52806 MYC ENCODE Transcription Factor Targets 1.0 null Sperm head COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 1.707 striatum_12 pcw_F_12960 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 0.948842 POLR2A_A549_hg19_5 ENCODE Transcription Factor Binding Site Profiles 1.0 null mRNA_MYBL2_19796622 ESCAPE Omics Signatures of Genes and Proteins for Stem Cells -1.0 null HUPT3 CCLE Cell Line Gene CNV Profiles -1.0 -1.74468 CTCF_epithelial cell of esophagus_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null c2c12 BioGPS Mouse Cell Type and Tissue Gene Expression Profiles -1.0 -0.854089 parabigeminal nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.30865 RAD21_A549_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null AtrioventricularNode BioGPS Human Cell Type and Tissue Gene Expression Profiles 1.0 1.70824 CTCF_MCF-7_hg19_8 ENCODE Transcription Factor Binding Site Profiles 1.0 null Flocculus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.69789 ZNF343 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 53.8089 Nucleus of the solitary tract, commissural part Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.10482 CTCFL JASPAR Predicted Human Transcription Factor Targets 2025 1.0 37.7913 CBX3_K562_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null female reproductive gland TISSUES Experimental Tissue Protein Expression Evidence Scores 1.0 0.766457 Lung squamous cell carcinoma_LUSC_TCGA-85-8070-01A-11R-2247-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Primary somatosensory area, trunk, layer 1 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.27275 SKMEL1 CCLE Cell Line Gene CNV Profiles -1.0 -1.50496 HCFC1 ENCODE Transcription Factor Targets 1.0 null IGR37 CCLE Cell Line Gene CNV Profiles -1.0 -1.33611 Head and Neck squamous cell carcinoma_HNSC_TCGA-KU-A6H8-01A-21R-A34R-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null UOK101 CCLE Cell Line Gene Expression Profiles 1.0 1.70134 CTCF_MCF-7_hg19_9 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_mammary epithelial cell_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Meiotic spindle COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 1.281 CTCF_retinal pigment epithelial cell_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Paraflocculus, molecular layer Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.61295 POR_KO_GDS1678_761_mouse_ILEUM GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null DOV13 DepMap CRISPR Gene Dependency 1.0 5.57535 CTCF_GM12864_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null RAD21_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-4256 TargetScan Predicted Conserved microRNA Targets 1.0 0.714812 hsa-miR-875-3p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.7397 HES5 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 19.5496 CTCF_HepG2_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null NCI-H1373 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.17959 Kidney renal papillary cell carcinoma_KIRP_TCGA-MH-A854-01A-11R-A355-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null nih 3T3 BioGPS Mouse Cell Type and Tissue Gene Expression Profiles -1.0 -1.25098 Meiotic cohesin complex COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 1.733 GSE210655_3_v_2_cisplatin_mouse RummaGEO Drug Perturbation Signatures -1.0 null NCI-H596 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.978816 496100380_FWM_no dementia_no TBI_78_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 5.63447 CTCF_HEK293_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null mTert_OE_GDS1211_256_mouse_Embryonic fibroblasts GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null CTCF_GM12868_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null HPAFII CCLE Cell Line Gene CNV Profiles 1.0 1.77989 SKM1 CCLE Cell Line Gene CNV Profiles -1.0 -1.64639 r9 part of nucleus gracilis Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.25925 hsa-miR-3074-3p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.99187 Sarcoma_SARC_TCGA-SG-A6Z7-01A-12R-A32Q-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null superficial stratum of r10Ve Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.41232 SKNFI CCLE Cell Line Gene CNV Profiles 1.0 1.41452 GABPA_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null POLR2A_H1-hESC_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null mRNA_WHSC2_19796622 ESCAPE Omics Signatures of Genes and Proteins for Stem Cells 1.0 null KP-2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.19913 Sarcoma_SARC_TCGA-DX-A1KW-01A-22R-A24X-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null superficial stratum of r1BI Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -2.85665 H3K9me3_CD34 Cultured Cells Roadmap Epigenomics Histone Modification Site Profiles 1.0 null DMS 53 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.83013 NCI-H2106 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.35303 periventricular stratum of DTTh Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.14249 CTCF_BJ_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Kidney renal papillary cell carcinoma_KIRP_TCGA-SX-A7SM-01A-11R-A355-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Coiled-coil domain-containing glutamate-rich protein family 1 InterPro Predicted Protein Domain Annotations 1.0 null CTCF_GM12874_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CBX3 ENCODE Transcription Factor Targets 1.0 null CTCF_brain microvascular endothelial cell_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null TBX15 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 18.2898 HS 746T Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.79463 CTCF_fibroblast of mammary gland_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null periventricular stratum of r2BM Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.03949 NCIH2171 CCLE Cell Line Gene Expression Profiles -1.0 -1.5075 Cornea plana DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.811 Prelimbic area, layer 2 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 2.01634 Pancreatic adenocarcinoma_PAAD_TCGA-HZ-7923-01A-12R-2156-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Kidney renal papillary cell carcinoma_KIRP_TCGA-SX-A7SN-01A-11R-A355-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null