association	dataset	threshold value	standardized value
GSE205070_1_v_6_mertk_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Msgn1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	20.3432
TEKT2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.0393
GSE175787_5_v_9_rhoc_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE188870,GSE188871_4_v_2_kat7_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Prdm14	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	17.1366
CYBA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.03875
FBXL16	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.32099
CIP2A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.32146
BRAT1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.03588
BATF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.7823
GSE126345_9_v_3_hcrt_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GSE88819_1_v_4_tug1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
RHOU	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.91677
FZD9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.04495
PMC7726486-mmc3.xlsx-Sheet1-Table_S2_Differentially_expressed_genes_in_ZFP-VPR-362_samples_ZKSCAN7	Rummagene Transcription Factor Associations 2026	1.0	null
GJC3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.50047
GSE157960_0_v_1_progesterone_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE164521_0_v_1_nitric oxide_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
YIF1A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.98854
SNRPD2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.23911
ZEB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.4459
PMC12048643-44318_2025_409_MOESM3_ESM.xlsx-regulonTargets-NFIC_NFIC	Rummagene Transcription Factor Associations 2026	1.0	null
GSE128634,GSE128636_1_v_0_foxo1_human	RummaGEO Gene Perturbation Signatures	1.0	null
Atf3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	22.8635
PMC6299095-41389_2018_108_MOESM4_ESM.xlsx-T47D-TRPS1_peak-gene_symbol_TRPS1	Rummagene Transcription Factor Associations 2026	1.0	null
SP8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	96.7121
USP47	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.96072
LRIG3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.7169
GSE239844_7_v_2_crizotinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
ZNF449	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	73.9414
SS18L1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.26958
GSE214823,GSE214824_6_v_2_crtc2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
DCAF17	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.2308
GSE194396,GSE194429_1_v_0_atrx_human	RummaGEO Gene Perturbation Signatures	-1.0	null
PMC7498599-41467_2020_18508_MOESM11_ESM.xlsx-GV_RFX-Unnamed_1_RFX1	Rummagene Transcription Factor Associations 2026	1.0	null
KANSL1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.01482
PPP1R3C	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.62631
PMC6137307-mmc2.xlsx-IRF9-IFNa-Table_S1_IRF9-IFNa_Related_to_Figure_1_IRF9	Rummagene Transcription Factor Associations 2026	1.0	null
PAX7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.35953
GSE129241_3_v_0_valproic acid_human	RummaGEO Drug Perturbation Signatures	-1.0	null
PMC8986528-41586_2022_4598_MOESM6_ESM.xlsx-Fig_4f-NOL9_KD_upreg_AR	Rummagene Transcription Factor Associations 2026	1.0	null
GSE81803,GSE81912_4_v_1_fmr1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
496100372_HIP_dementia_no TBI_84_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.59485
B4GALT5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.48793
KLF5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	189.294
H2AC18	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.16366
CLASP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.52639
PARD6B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.76956
GSE239844_1_v_9_crizotinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
EFCAB6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.97653
ZNF343	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	63.201
GSE167886_2_v_0_chd7_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
ABT1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.54274
SIPA1L2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.24389
TTLL13	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.64778
GSE128634,GSE128636_4_v_5_foxo1_human	RummaGEO Gene Perturbation Signatures	1.0	null
DDB2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.50524
GSE191105_2_v_4_nat1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
ELK4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.2959
PELI3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.80943
PMC7439574-13148_2020_914_MOESM2_ESM.xlsx-log2_fold_change_-2-1280_genes_are_more_than_four-fold_downregulated_in_PRDM8-_-_compared_to_control_PRDM8	Rummagene Transcription Factor Associations 2026	1.0	null
NR2F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.7151
496100515_HIP_dementia_TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.16748
KCNC3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.12305
THRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.0989
BSDC1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.99994
ZBTB32	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.5472
SLC23A2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.79878
SLC25A27	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.31025
PMC12661646-dmm-18-052290-TableS5.xlsx-Table_S7_related_to_Fig5D-Fig_5D_-_overlap_between_genes_differentially_expressed_in_presence_absence_of_FOXP2_with_cerebellar_organoid_data_FOXP2	Rummagene Transcription Factor Associations 2026	1.0	null
FAM32A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.06535
NOL7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.30881
MVB12A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.08607
H4C8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.99242
PPP6C	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.91081
GSE128634,GSE128636_1_v_3_foxo1_human	RummaGEO Gene Perturbation Signatures	1.0	null
EGR3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	53.5544
GSE144231_2_v_7_cxcr2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
ZKSCAN3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	58.981
CTNNA1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.30397
GSE149123,GSE149128_1_v_0_cdk7_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
ATP1A2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.01182
TRIM14	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.02818
SP5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	130.187
GSE181517_2_v_1_doxorubicin_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE157383_3_v_2_abemaciclib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Hic1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	16.0588
FOSL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.2815
496100338_HIP_probable Alzheimer's disease_no TBI_79_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.2932
MYL6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.4111
TMEM199	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.68251
PMC8494348-pone.0257161.s002.xlsx-only_OXT_NOT_ext-OXT_ext-Gene_Name_NR4A2	Rummagene Transcription Factor Associations 2026	1.0	null
496100380_FWM_no dementia_no TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	-1.0	-2.11413
Zfp335	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	17.381
9+2 motile cilium	GO Cellular Component Annotations 2025	1.0	null
BATF::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.5731
PMC9380317-13045_2022_1327_MOESM3_ESM.xlsx-Table_S7-Table_S7_Top_500_differentially_modified_gene_bodies_between_MM_and_its_precursors_in_AA_patients_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
RICTOR	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.52878
UCHL1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.58864
GXYLT1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.24012
GSE190316,GSE190324_0_v_9_rbm4_human	RummaGEO Gene Perturbation Signatures	-1.0	null
SLC38A4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.34169
GSE147056_2_v_1_actl6b_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE213588_10_v_2_trametinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
HSFY2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.1606
PEPD	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.52691
KCNK1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.35208
TAF1D	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.3456
KLF6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	87.6004
TP53INP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.50587
GSE217694_3_v_0_pold1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
496100529_HIP_no dementia_no TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.1737
RNF149	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.35795
ARL6IP5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.32219
NKX2-1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.39043
PSMD6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.06064
NOP10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.01264
SNAPC5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.80207
PMC10510228-13287_2023_3481_MOESM7_ESM.xlsx-DEGs-Differentially_expressed_genes_DEGs_in_bone_marrow-derived_MSCs_from_six_human_donors_cultured_at_high_confluency_MSC-HC_versus_low_confluency_MSC-LC_MSC	Rummagene Transcription Factor Associations 2026	1.0	null
GNG14	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.17558
GSE205163,GSE205164_5_v_6_znf808_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE88819_1_v_2_tug1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
ANXA6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.21243
CHD6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.68981
DNPH1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.82461
ZNF519	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.49041
ULK1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.29364
DNTTIP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.16287
BARD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.58214
SPP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.48728
LIG3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.30979
KCNA6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.8834
PMC6932815-ppat.1007634.s015.xlsx-ST5_DGE_ELF1-R8AvIFN48-mock_lfc-ensembl_gene_id_ELF1	Rummagene Transcription Factor Associations 2026	1.0	null
ME2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.84383
GSE186005_1_v_2_klf5_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
LMBR1L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.56367
EZR	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.76977
SLC35D3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.22101
GSE107505_0_v_2_nanog_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
ACER3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.96469
ZNF157	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.10501
NCOR1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.61636
PSMD13	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.51063
ETFDH	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.18966
GSE81803,GSE81912_3_v_5_fmr1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
ODAD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.94135
PSMB8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.7255
GSE88819_7_v_10_tug1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GSE157383_0_v_1_abemaciclib_human	RummaGEO Drug Perturbation Signatures	1.0	null
DMPK	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.48946
SGSM3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.12043
GSE79663_2_v_0_tcf4_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
ZNF75A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.596
LYAR	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.0653
GSE175787_8_v_2_rhoc_human	RummaGEO Gene Perturbation Signatures	-1.0	null
CPHXL2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.63257
PDCL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.42721
IQCB1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.58967
ALG6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.41967
GON4L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.76766
CENPM	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.19225
GP1BA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.30286
Nfatc1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	38.0376
GSE148695,GSE167284_2_v_1_satb2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
MOB3B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.51416
ZNF182	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.81421
GSE175787_11_v_0_rhoc_human	RummaGEO Gene Perturbation Signatures	1.0	null
PMC7498599-41467_2020_18508_MOESM11_ESM.xlsx-GV_RFX-Unnamed_2_RFX1	Rummagene Transcription Factor Associations 2026	1.0	null
GSE189789_0_v_1_oridonin_human	RummaGEO Drug Perturbation Signatures	1.0	null
BMP4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.50565
NMRK1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.02262
NEFL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.72945
UAP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.62178
C1QTNF4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.76628
GSE179868,GSE180330_1_v_0_ddx21_human	RummaGEO Gene Perturbation Signatures	-1.0	null
NAF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.22726
496100465_HIP_possible Alzheimer's disease_TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.21037
CTCFL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.7947
GSE166054_1_v_0_klf1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PMC12661646-dmm-18-052290-TableS6.xlsx-Table_S7_related_to_Fig5D-Fig_5D_-_overlap_between_genes_differentially_expressed_in_presence_absence_of_FOXP2_with_cerebellar_organoid_data_FOXP2	Rummagene Transcription Factor Associations 2026	1.0	null
PMC9124206-41419_2022_4940_MOESM8_ESM.xlsx-DEG_PACA-CA-ID_PTF1A	Rummagene Transcription Factor Associations 2026	1.0	null
FOXH1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.95271
PMC4082627-12864_2014_6197_MOESM8_ESM.xlsx-GATA3_only-Nearest_Ensembl_GATA3	Rummagene Transcription Factor Associations 2026	1.0	null
GSE183271_1_v_0_nicotinamide_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
KPNA6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.46074
PMC11531655-MCO2-5-e754-s001.docx-0-IRF7_Regulon_3_IRF7	Rummagene Transcription Factor Associations 2026	1.0	null
HDAC5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.14119
SLC35B4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.02869
YEATS4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.29855
FEZF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	61.7698
TTLL3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.64014
HSPD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.28655
BARHL1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.78951
Nfat5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	34.4944
C17orf75	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.4274
GSE183271_4_v_3_nicotinamide_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
TNNT2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.66299
CTDSPL2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.93333
GLIS3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.8203
GSE180185_9_v_10_setbp1_human	RummaGEO Gene Perturbation Signatures	1.0	null
SC5D	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.44441
PMC7498599-41467_2020_18508_MOESM11_ESM.xlsx-GV_RFX-Unnamed_3_RFX1	Rummagene Transcription Factor Associations 2026	1.0	null
COPS8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.18368
VPS4A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.02408
HERC2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.32743
NFKB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	50.5135
ZSCAN5A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.55279
DPH2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.94223
STRADB	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.26041
PMC6499311-supp_gr.243345.118_Supplemental_Table_S8.xlsx-S8B_Het1A-HNF4A_2d_5x_open-Nearest_Ensembl_HNF4A	Rummagene Transcription Factor Associations 2026	1.0	null
KLHDC10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.32471
GSE88819_6_v_10_tug1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
MAP7D3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-4.00905
FAM110D	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.96818
GSE163240_2_v_0_enzalutamide_human	RummaGEO Drug Perturbation Signatures	1.0	null
PMC10011543-41419_2023_5707_MOESM4_ESM.xlsx-genes_with_unique_SNP-F5-Pneo-r__CIC-1n_h-r_CIC	Rummagene Transcription Factor Associations 2026	1.0	null
496100367_FWM_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	-1.0	-2.05628
CPXCR1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.26351
HDAC4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.72886
ENTREP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.67309
EGR2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	84.8446
CEP152	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.09932
APH1B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.64756
GNPTAB	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.28507
MSC	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.18108
AP1G2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.01397
CEND1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.17031
ZNF460	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	163.798
OXA1L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.32198
PURA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.28021
PRMT3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.05195
GSE88819_1_v_9_tug1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
KLF15	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	150.427
TFAP2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	245.974
GSE204784,GSE204787_1_v_0_tfcp2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
NYAP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.42474
ARHGAP4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.37029
GSE101239_3_v_2_valproic acid_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
HES6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.6808
PMC12176927-125_2025_6424_MOESM1_ESM.pdf-23-FOXG1_FOXG1	Rummagene Transcription Factor Associations 2026	1.0	null
PITRM1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.46385
MAZ	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	142.862
ZFP69B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.25663
PSEN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.42544
EHMT1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.54125
Jun	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	25.1419
GPR89A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.93161
Nfatc2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	28.9376
LEUTX	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.63518
LAGE3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.66501
SPR	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.30387
LONRF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.31427
OR2B6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.48342
ZNF513	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.56776
SEMA6C	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.64127
SP4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.21974
GSE217405_0_v_1_osimertinib_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
DNASE1L2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.68007
SEC14L2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.14532
FNBP1L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.48369
GSE239844_1_v_10_crizotinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
FZD8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.76082
RFX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.5907
FAM193A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.23189
Ciliated cell_Lung_Human	CellMarker Gene-Cell Type Associations	1.0	null
ZNF454	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	122.437
TXN2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.22632
GSE128634,GSE128636_1_v_5_foxo1_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE119978,GSE180930_6_v_8_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
PCNX1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.34011
TTC9C	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.25972
MEGF10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.9944
CEBPZOS	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.45379
NARS1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.86605
DES	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.26508
RPS28	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.17592
ESR2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.3547
MATN4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.02857
EGR4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	91.6068
DIRAS1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.24263
CDKN3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.33698
RAB11A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.13226
ZNF766	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.43293
SHROOM1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.21614
RPL36AL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.11348
PMC6879454-Data_Sheet_1.xlsx-AA_disease-Unnamed_4_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
GSE130690,GSE130692_1_v_0_sirt6_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
sperm flagellum	GO Cellular Component Annotations 2025	1.0	null
VEZF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.5572
KLF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	84.7571
XKR8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.99473
KLF17	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	128.971
NCAPH	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.42911
SHLD2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.24847
MRGBP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.17353
ZBTB8A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.61313
ASCL3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.20521
PMC6499311-supp_gr.243345.118_Supplemental_Table_S8.xlsx-S8B_Het1A-HNF4A_2d_5x_open-Gene_Name_HNF4A	Rummagene Transcription Factor Associations 2026	1.0	null
PMC8046804-41467_2021_22478_MOESM11_ESM.xlsx-Amp_AA-TCGA-Unnamed_15_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
GSE226355,GSE226357_1_v_0_ybx1_human	RummaGEO Gene Perturbation Signatures	1.0	null
UBE2F	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.62849
GSE214823,GSE214824_6_v_1_crtc2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
IFI16	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.87871
SDE2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.8462
GSE88819_0_v_10_tug1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
S100A14	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.95286
WIPI2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.67623
Brain - Spinal cord (cervical c-1)	GTEx Tissue Gene Expression Profiles 2023	1.0	0.983002
KLF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	122.72
FCHSD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.25725
TRAPPC2L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.12221
EXOC1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.94216
TMEM59	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.12811
RTKN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.11493
ASCL4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.38441
GSE145915_3_v_2_pcm1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
RCBTB1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.58834
HERPUD2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.60822
ZNF148	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	199.84
MRE11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.95178
CBY1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.48143
GSE154074_2_v_0_bleomycin_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
HEY2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.0737
RPUSD2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.26793
PAK1IP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.97385
DNAJC7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.94756
GSE81803,GSE81912_2_v_1_fmr1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE183271_5_v_0_nicotinamide_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE175787_8_v_10_rhoc_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE92457_9_v_10_ethanol_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
GSE112763,GSE112767_2_v_3_dgcr8_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
ZNF227	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.6058
RFC1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.72842
GSE101336_1_v_0_decitabine_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
H2BC9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.00001
GSE214823,GSE214824_0_v_1_crtc2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Stat4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	26.0435
ADAL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.25157
MSL2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.92662
ARHGDIG	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.19068
GSE147056_0_v_1_actl6b_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
NDUFV3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.51854
GSE88819_1_v_8_tug1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
MAFG::NFE2L1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.003
TFAP2C	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	131.625
MINDY2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.05796
MMP24	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.20046
MEIOC	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.54865
GSE239844_6_v_12_crizotinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE226355,GSE226357_2_v_0_ybx1_human	RummaGEO Gene Perturbation Signatures	1.0	null
KLF13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.3624
CYB5B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.49036
MBD3L3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.32987
GSE234289_4_v_2_rfx6_human	RummaGEO Gene Perturbation Signatures	1.0	null
CHCHD4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.48241
EFNB2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.27246
ZNF277	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.19171
NDFIP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.09318
496100480_HIP_no dementia_TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.25506
MCM9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.51506
ARMC1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.19684
GSE102269_1_v_2_clpp_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PPP1R1A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.35151
GSE88819_3_v_10_tug1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
496100539_HIP_probable Alzheimer's disease_TBI_78_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.26477
496100611_FWM_no dementia_no TBI_84_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	-1.0	-2.84886
KLF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	108.006
RFX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	52.0674
GSE223241_2_v_0_cdkn2a_human	RummaGEO Gene Perturbation Signatures	-1.0	null
SMARCC1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-4.07451
GSE107505_3_v_2_nanog_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GSE107505_1_v_2_nanog_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
TEX19	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.45028
CCN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.10128
ANKZF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.40754
GSE205163,GSE205164_5_v_8_znf808_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GTF2IRD2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.00811
MAT1A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.71858
PRSS8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.28828
GSE130437_0_v_1_palbociclib_human	RummaGEO Drug Perturbation Signatures	1.0	null
PMC9859043-elife-78421-supp9.xlsx-LHX8_P-Gene_symbol_LHX8	Rummagene Transcription Factor Associations 2026	1.0	null
CHMP1B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.37458
CSNK1G3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.56305
GSE145915_3_v_4_pcm1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
HEXIM2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.57626
DMAC2L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.28399
MCM3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.3853
PDRG1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.18169
ZBTB4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.35796
ZNF682	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	140.667
496100514_FWM_no dementia_TBI_95-99_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	-1.0	-2.80552
GSE227698_2_v_4_g0s2_human	RummaGEO Gene Perturbation Signatures	1.0	null
496100362_FWM_no dementia_no TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	-1.0	-3.54798
TRAPPC8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.34575
DZIP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.96722
TMEM200A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.52091
CCAR1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.06356
PCDHB8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.23506
GSE126127_0_v_4_prmt1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
SMURF2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.79098
CDCA8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.38089
TFAP2E	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	54.1428
IGHMBP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.92427
PAPSS1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.26413
MRPL9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.19956
496100622_HIP_no dementia_no TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.17922
OSBPL10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.23702
BECN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.26138
RAB8B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.82526
Npas4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	21.1436
HAUS3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.66008
PMC6591464-Table_4.xlsx-Sheet_1-Non-AIRE_regulated_genes_random_set_3_AIRE	Rummagene Transcription Factor Associations 2026	1.0	null
TMEM130	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.54881
QTRT2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.59371
GSE90019,GSE90020_1_v_3_phf8_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GSE175787_5_v_6_rhoc_human	RummaGEO Gene Perturbation Signatures	-1.0	null
ZBED4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	216.655
HLA-A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-4.22705
ZNF735	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.76927
TEX264	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.7827
PMC6167382-41467_2018_6258_MOESM4_ESM.xlsx-TEAD-associated_GSC-Specific_UP-Nearest_Ensembl_GSC	Rummagene Transcription Factor Associations 2026	1.0	null
RFX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.1711
GSE175787_8_v_9_rhoc_human	RummaGEO Gene Perturbation Signatures	-1.0	null
BATF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.4593
GLT8D1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.27001
TMEM222	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.23588
Spi1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	104.877
GSE175787_5_v_2_rhoc_human	RummaGEO Gene Perturbation Signatures	-1.0	null
PMC12048643-44318_2025_409_MOESM3_ESM.xlsx-regulonTargets-SP1_SP1	Rummagene Transcription Factor Associations 2026	1.0	null
YBX3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.80532
DCAKD	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.12397
TRIL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.02684
MXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.5868
FOXI2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.13598
ZNF134	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.51856
GSE182888_0_v_2_jmjd6_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE218580_1_v_4_fentanyl_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
ZNF354C	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.44664
GSE131161_1_v_4_rarres1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
SH3BP4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.26681
KLF16	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	150.088
RAB2B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.46453
PRPF38B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.62085
TBX18	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.80314
PMC9537523-41467_2022_33364_MOESM7_ESM.xlsx-scores_wilcoxon_1_MONTH_ORG-EN1_n_EN1	Rummagene Transcription Factor Associations 2026	1.0	null
MAX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.5418
TFEB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.8384
Prdm15	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	34.637
ZNF549	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	68.8019
FZD3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.13549
PMC12661646-dmm-18-052290-TableS7.xlsx-Table_S7_related_to_Fig5D-Fig_5D_-_overlap_between_genes_differentially_expressed_in_presence_absence_of_FOXP2_with_cerebellar_organoid_data_FOXP2	Rummagene Transcription Factor Associations 2026	1.0	null
ACBD7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.16038
496100355_HIP_no dementia_no TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.25169
GSE175787_4_v_0_rhoc_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE239844_7_v_9_crizotinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
GLIS2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	71.8048
PMC4082627-12864_2014_6197_MOESM8_ESM.xlsx-GATA3_only-Gene_Name_GATA3	Rummagene Transcription Factor Associations 2026	1.0	null
CACNB1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.86941
PXN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.59615
SERINC5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.92682
MMGT1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.44758
PIPOX	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.6798
PPP2CA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.07474
HINFP	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.8407
PLA2G3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.13283
GSE217105_0_v_1_gemcitabine_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
FBL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.02571
GDF3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.19713
ZNF99	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.70835
DAP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.99999
SOX13	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.61207
PHPT1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.79858
GSE164874_5_v_10_prednisolone_human	RummaGEO Drug Perturbation Signatures	1.0	null
TRERF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.49995
RALY	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.34803
EGR1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	104.895
YLPM1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.75253
PALS2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.56303
GSE217405_0_v_1_egfr_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PMC6137307-mmc2.xlsx-STAT2-IFNa-Table_S1_STAT2-IFNa_Related_to_Figures_1_4_STAT2	Rummagene Transcription Factor Associations 2026	1.0	null
MMP3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.3879
ADAM8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.46065
SP9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	121.363
CYP51A1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.26134
ZFP62	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.05531
HYLS1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.30153
WDR48	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.49931
KCTD6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.10613
GSE176555,GSE176556_1_v_0_acriflavine_human	RummaGEO Drug Perturbation Signatures	1.0	null
NALF2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.42505
PLEKHA3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.55012
NAP1L4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.13119
GSE138001_0_v_4_rorb_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
THAP12	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.36241
FABP7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.26211
PGF	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.54374
SLC5A3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.68375
GSE154074_5_v_0_bleomycin_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
GET1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.09568
ATXN7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.01892
NGFR	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.56088
GSE139975_3_v_0_rnf2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
ASPSCR1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.53252
GLIS3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.72783
TFAP2B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	170.52
ANO8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.7162
GYG2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.7082
TIMP3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.66638
Nr5a2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	20.0927
GSE239844_1_v_2_crizotinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE211983_0_v_3_nicotine_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
PDHX	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.06146
PMC7064337-elife-51373-supp1.xlsx-EZH2_targets_shPHF19-List_of_2084_genes_marked_by_EZH2_ChIPseq_after_PHF19_KD_shPHF19_AR	Rummagene Transcription Factor Associations 2026	1.0	null
MEX3B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.35528
PCNP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.17653
GSE213588_10_v_6_trametinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
496100418_TCx_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	-1.0	-2.1447
ZNF761	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.22225
496100445_HIP_no dementia_no TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.13278
TSPAN9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.18793
MAP1LC3C	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.64058
GABBR1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.20798
C9orf72	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.85933
GSE175787_4_v_7_rhoc_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE84922,GSE84924_0_v_1_sall4_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
ATP2C1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.63439
ZMYM6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.32743
496100576_HIP_dementia_TBI_81_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.35432
GSE205163,GSE205164_1_v_8_znf808_human	RummaGEO Gene Perturbation Signatures	-1.0	null
BTN2A1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.36976
GSE247764_1_v_2_nell2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PMC8423434-mmc7.xlsx-SOX2_Primed-Genes_n_3042_SOX2	Rummagene Transcription Factor Associations 2026	1.0	null
PITPNB	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.60473
GSE128333_4_v_5_tcf4_human	RummaGEO Gene Perturbation Signatures	-1.0	null
CUEDC2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.62726
KLF11	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	115.928
GSE174701_1_v_6_maml3_human	RummaGEO Gene Perturbation Signatures	1.0	null
B3GALNT2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.65592
PAN2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.73861
C16orf87	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.01454
ZNF610	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	139.527
TALDO1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.86495
HLA-DQB1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.3436
PWWP2A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.16494
HOXD12::ELK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.9469
CS	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.42579
TRAPPC3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.52696
ASB16	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.58364
FANCM	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.4225
VDAC2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.88372
Pituitary	GTEx Tissue Gene Expression Profiles 2023	1.0	1.57339
ZNF681	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.17998
FLT4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.07304
FECH	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.93793
MTHFD1L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.41006
ZBTB33	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.13208
POLDIP3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.10398
PARP12	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.97788
Prdm4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	28.1406
GSE220813_0_v_1_zfp750_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GSE213588_10_v_4_trametinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
SDHA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.1235
H2BC7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.06465
GSE128634,GSE128636_2_v_0_foxo1_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE240030,GSE252532_0_v_2_atrx_human	RummaGEO Gene Perturbation Signatures	-1.0	null
PCDHB15	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.71108
SLC36A1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.52012
DCTN6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.72191
GSE239844_7_v_10_crizotinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE240027,GSE240030_5_v_4_atrx_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PMC12661646-dmm-18-052290-TableS8.xlsx-Table_S7_related_to_Fig5D-Fig_5D_-_overlap_between_genes_differentially_expressed_in_presence_absence_of_FOXP2_with_cerebellar_organoid_data_FOXP2	Rummagene Transcription Factor Associations 2026	1.0	null
ARHGEF5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.16535
CORO1C	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.09353
PMC11214527-mmc5.xlsx-ADNP-gene_ADNP	Rummagene Transcription Factor Associations 2026	1.0	null
GSE213228_2_v_5_irak2_human	RummaGEO Gene Perturbation Signatures	1.0	null
ZBTB11	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.6848
OGFR	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.36769
GSE193258,GSE193259_9_v_6_osimertinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
FBXO2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.82405
ZDHHC5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.96565
GDAP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.38578
CKAP2L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.13783
496100278_FWM_no dementia_TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	-1.0	-2.75126
ARRDC2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.22154
ZFP57	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.6085
BHLHE22	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.7495
NFKB2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.6992
PMC6934839-41598_2019_56277_MOESM2_ESM.xlsx-ONECUT2_DOWN-Gene_Symbol_ONECUT2	Rummagene Transcription Factor Associations 2026	1.0	null
H1-8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.71125
ORAI1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.36381
STBD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.78429
CDK2AP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.11379
LIMA1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.36997
APP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.63123
B3GNT5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.01131
PMC7889611-41467_2021_21346_MOESM10_ESM.xlsx-High_TSA_score_correlations-Supplementary_Data_6_Genes_with_expression_that_positively_correlate_with_a_high_TSA_score_in_AIRE_and_corneocyte-like_mTECs_AIRE	Rummagene Transcription Factor Associations 2026	1.0	null
DPYSL4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.58378
ZNF213	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	135.7
TMEM140	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.27842
GDF9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.6957
SEH1L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.6626
UGT8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.08347
POMP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.43479
TOMT	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.09514
PLAGL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	53.4897
TSACC	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.2851
SUMF2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.05342
CSTF3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.69405
GSE190316,GSE190324_10_v_9_rbm4_human	RummaGEO Gene Perturbation Signatures	-1.0	null
PHF20L1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.17967
GSE142210_4_v_5_panobinostat_human	RummaGEO Drug Perturbation Signatures	-1.0	null
TIMM10B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.22142
PISD	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.17435
PMC10154349-41418_2023_1142_MOESM6_ESM.xlsx-Sheet1-Supplementary_data_3_Genes_positively_correlated_with_HOXC13-AS_in_skin_granular_cells_correlation_coefficients_cor_0_FDR_0_05_HOXC13	Rummagene Transcription Factor Associations 2026	1.0	null
ZIC5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	92.7089
SPHK2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.77761
BDH1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.98812
ZNF740	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	250.541
DNAJC25	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.11307
GSE175787_13_v_0_rhoc_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE116354,GSE117379_2_v_4_cox2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
BEX3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.07409
Ikzf3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	30.858
GSE180185_7_v_1_setbp1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GNAQ	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.4069
MAPK6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.85575
GSE95685_4_v_3_tcpobop_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
496100474_FWM_possible Alzheimer's disease_TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	-1.0	-3.11882
PABIR1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.11242
TAOK1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.65264
GSE126345_7_v_5_hcrt_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
LIPG	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.33763
GSE191105_2_v_3_nat1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
SMTN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.95441
PMC11462941-CAS-115-2947-s001.pdf-147-THAP9_THAP9	Rummagene Transcription Factor Associations 2026	1.0	null
CRLF3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.12903
GSE157960_0_v_3_progesterone_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
TMEM143	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.05978
PMC9124206-41419_2022_4940_MOESM8_ESM.xlsx-DEG_PACA-CA-geneName_PTF1A	Rummagene Transcription Factor Associations 2026	1.0	null
LDHB	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.77818
VPS16	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.04699
MRPL2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.40652
POM121C	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.56208
GCAT	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.20759
GSE202825_2_v_1_ano1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
PDLIM1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.081
MORN4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.581
EAF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.41302
RWDD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.11247
GSE212299_2_v_1_abi3_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
ZSCAN31	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	62.0183
496100345_FWM_no dementia_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	-1.0	-2.04753
GSE224969,GSE224971_3_v_1_chtop_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GSE142210_4_v_6_panobinostat_human	RummaGEO Drug Perturbation Signatures	-1.0	null
SIRT1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.53468
MPI	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.59322
496100434_HIP_no dementia_TBI_95-99_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.65397
ZBTB14	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	57.4636
ZBTB24	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	70.9686
TMEM44	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.73582
APOBEC2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.5466
PLD6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.06361
GSE119498_0_v_7_setd5_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
USP49	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.81997
PMC12549544-mmc2.xlsx-AA_D1_VS_D7-Name_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
MAP9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.51628
MED8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.61453
BCL7C	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.40929
GSE188870,GSE188871_1_v_3_kat7_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
TERF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.64147
GSE164529_0_v_2_tamoxifen_human	RummaGEO Drug Perturbation Signatures	1.0	null
BNIP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.07189
Elf5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	28.951
PMC4815041-NIHMS715090-supplement-Supplementary_Table_10.xlsx-CCF_DP_clustering-Hugo_Symbol_PITX1	Rummagene Transcription Factor Associations 2026	1.0	null
FOXI3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.33204
PLPP3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.51489
GSE184892_4_v_2_trehalose_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Spleen	GTEx Tissue Gene Expression Profiles 2023	1.0	1.14209
TLNRD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.10291
GSE225656_2_v_1_tsc2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PMC12661646-dmm-18-052290-TableS9.xlsx-Table_S7_related_to_Fig5D-Fig_5D_-_overlap_between_genes_differentially_expressed_in_presence_absence_of_FOXP2_with_cerebellar_organoid_data_FOXP2	Rummagene Transcription Factor Associations 2026	1.0	null
PRAME	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.09836
ZNF669	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.50924
ZSWIM7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.22028
SP3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	106.319
EEF1G	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-7.82121
ZCRB1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.03706
GSE214823,GSE214824_0_v_2_crtc2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PRIM1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.82182
PRPF19	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.28571
ARGLU1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.17048
METTL15	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.64549
GSE145323,GSE145324_1_v_0_rfx3_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
NOA1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.25159
USP12	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.16402
TMEM106A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.18725
EVI5L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.49461
IDH3A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.62017
NHLH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	56.5815
GSE92457_9_v_12_ethanol_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
RAD18	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-4.13446
SYDE1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.31334
EIF5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.12758
PMC6932815-ppat.1007634.s015.xlsx-ST5_DGE_ELF1-R8AvIFN48-mock_lfc-external_gene_name_ELF1	Rummagene Transcription Factor Associations 2026	1.0	null
ANKRD10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.77988
CUX1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.52555
C2CD2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.54619
UBA6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.73404
GSE94814_1_v_0_reck_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PMC8901773-41598_2022_7986_MOESM3_ESM.xls-T_vs_LPS-Gene_symbol_ENSEMBL_ID_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
SCOC	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.30805
COPRS	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.26226
ERCC3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.80505
BLTP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.40252
EIF4E	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.47933
ZNF679	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.16627
CCDC12	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.99633
CLOCK	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.3712
CSRNP3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.1747
GSE240645_1_v_0_u90926_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
SNRPB	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.4589
CDC25A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.3536
RREB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	163.636
Ciliated epithelial cell_Esophagus_Human	CellMarker Gene-Cell Type Associations	1.0	null
ATF3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.94542
ATAD3A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.12627
GOLT1A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.59797
SHQ1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.54716
UBR2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.27516
CRABP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.89782
SDR39U1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.52272
EID1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.37065
TATDN3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.2876
DGKA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.20016