association	dataset	threshold value	standardized value
GH3 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.238
ovary cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.071885
index	GeneRIF Biological Term Annotations	1.0	null
cytoplasmic vesicle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.536183
Umbilical artery	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.797
DETROIT 562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.24958
act-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.314046
Alzheimer Disease	DisGeNET Gene-Disease Associations	1.0	null
gracile nucleus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.01104
ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.065103
Endodermal sinus tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.468
subgranular zone of rostral dentate gyrus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.00184
hematopoietic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053634
Allantois	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.62
Extravillous cytotrophoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.638
mammary	GeneRIF Biological Term Annotations	1.0	null
oxyphilic adenoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.352291
Carcinoma Of Male Breast	DisGeNET Gene-Disease Associations	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-DU-6407-02B-11R-A36H-07,TCGA-DU-6407-02A-12R-A36H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Polycystic Ovary Syndrome	HuGE Navigator Gene-Phenotype Associations	1.0	null
sp1	GeneRIF Biological Term Annotations	1.0	null
TCF3_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-IQ-A61O-01A-11R-A30B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Urogenital system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
adrenal medulla	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.58043
G96	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.41239
Hyperthyroidism	DisGeNET Gene-Disease Associations	1.0	null
ARNT2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.0839
GSE169152_5_v_6_ibrutinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
skin	HPA Tissue Gene Expression Profiles	1.0	1.06542
G44	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.34333
OCI-M1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.86673
Isolated Somatotropin Deficiency	DisGeNET Gene-Disease Associations	1.0	null
laterorostral part of entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.99421
placenta	HPA Tissue Protein Expression Profiles	1.0	2.04572
pancreatic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.107257
Patu-8988 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.677
urinary system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.282837
GSE128730_3_v_6_neratinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
granulocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.183067
ZNF136	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.8588
H3K27me3_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
csh1	GeneRIF Biological Term Annotations	1.0	null
disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.477909
jar	GeneRIF Biological Term Annotations	1.0	null
Proteinuria	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.324
EBF1	ENCODE Transcription Factor Targets	1.0	null
GSE111247_11_v_4_temozolomide_human	RummaGEO Drug Perturbation Signatures	1.0	null
effector	GeneRIF Biological Term Annotations	1.0	null
placentas	GeneRIF Biological Term Annotations	1.0	null
choriocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.483986
whereas	GeneRIF Biological Term Annotations	1.0	null
parathyroid hormone secreting cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.489447
effect	GeneRIF Biological Term Annotations	1.0	null
layer IIIa of caudal entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.55809
Glycogen cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.808
Placenta disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.189
Te	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.352
Cytotrophoblast cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.503
choriocarcinoma	GeneRIF Biological Term Annotations	1.0	null
Adrenocortical carcinoma_ACC_TCGA-P6-A5OG-01A-22R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Adrenal Hyperplasia	DisGeNET Gene-Disease Associations	1.0	null
EZH2_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
male reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.412771
rostral presubiculum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.0146
organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.285507
uterine fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.297806
Cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.604
PMC10742386-pnas.2311372120.sd05.xlsx-DLX3_EVT-Gene_Symbol_DLX3	Rummagene Transcription Factor Associations 2026	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-J4-A67S-01A-11R-A30B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
sarcoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.327164
GSE195503_3_v_2_progesterone_human	RummaGEO Drug Perturbation Signatures	1.0	null
Genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.197
MDA-MB-435S cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.603
GATA5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.5096
Endocrine system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.72
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A2M5-06A-12R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
G112	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.931285
HS-74 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.472
Skin Cutaneous Melanoma_SKCM_TCGA-D3-A2JD-06A-11R-A18T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
tissues, cell types and enzyme sources	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	1.53602
NEMP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.52002
EFM-192A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.939416
DPRX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.7204
mixed ductal-endocrine carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.05303
bounding membrane of organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.057109
compared	GeneRIF Biological Term Annotations	1.0	null
ileocecum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.221291
breast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.354826
GSE235066_4_v_2_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
Filtration diaphragm	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.713
membrane-bounded vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.4757
reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.912226
Prostate Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
precommissural nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.56784
Persistent fetal circulation syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.246
urogenital system	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.046226
Central nervous system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
mass	GeneRIF Biological Term Annotations	1.0	null
pappapregnancyassociated	GeneRIF Biological Term Annotations	1.0	null
pancreas	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.651777
female reproductive system	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	1.53602
Sex cord-gonadal stromal tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.235
arcuate nucleus of medulla, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.11348
Germ	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.375
inferior rostral gyrus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.1209
Focal segmental glomerulosclerosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.032
NCI-H820	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17527
tissue	GeneRIF Biological Term Annotations	1.0	null
u251mg	HPA Cell Line Gene Expression Profiles	1.0	1.35827
animal	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
central glial substance	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	2.64031
carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.21365
Theca cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.892
GSE106661,GSE106665_0_v_3_arid1a_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE111247_14_v_4_temozolomide_human	RummaGEO Drug Perturbation Signatures	1.0	null
posterior hypothalamic nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.32424
Pancreatic adenocarcinoma_PAAD_TCGA-IB-AAUO-01A-12R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Swine testicular cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.01
Sarcoma_SARC_TCGA-QQ-A5VC-01A-31R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
outer CP in lateral temporal-occipital cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.905475
closely	GeneRIF Biological Term Annotations	1.0	null
female reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.821085
Villous cytotrophoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.217
ap2alpha	GeneRIF Biological Term Annotations	1.0	null
pancreatic alpha cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.350001
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-FA-8693-01A-11R-2404-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
chromaffin cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.47288
primary bacterial infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.053286
brain ventricle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.117214
3M complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.715
extremely	GeneRIF Biological Term Annotations	1.0	null
bewo cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.692902
VZ in lateral temporal-occipital cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.928937
gallbladder carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.258064
SW 780	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.27809
Head and Neck squamous cell carcinoma_HNSC_TCGA-CR-6488-01A-12R-2081-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE118077_1_v_8_sprr5_human	RummaGEO Gene Perturbation Signatures	1.0	null
Pituitary adenoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.516
BCAS2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.27404
ventral medial nucleus of thalamus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.6109
HCC1395	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
RERF-LC-OK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.24958
Kidney Chromophobe_KICH_TCGA-KN-8427-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
S100A13	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.76555
PMC7985179__F2	PFOCR Pathway Figure Associations 2023	1.0	null
shsy5y	GeneRIF Biological Term Annotations	1.0	null
hcgbeta	GeneRIF Biological Term Annotations	1.0	null
DANAZOL	DGIdb Drug Targets 2026	1.0	0.784178
macromolecular complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.040835
NCI-H522	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.4452
neuroepithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.164823
Endocrine organ benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.368
workshop	GeneRIF Biological Term Annotations	1.0	null
FOXC1	JASPAR Predicted Transcription Factor Targets	1.0	null
cos cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.50275
Chorionic villus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.22
Germ cell cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.763
Polycystic Ovary Syndrome	DisGeNET Gene-Disease Associations	1.0	null
motor neuron disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.065995
NCI-H1437	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06811
genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042032
GSE144484_2_v_1_mllt6_human	RummaGEO Gene Perturbation Signatures	-1.0	null
vegf	GeneRIF Biological Term Annotations	1.0	null
STAT3_01_180	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	0.72558
496100508_PCx_possible Alzheimer's disease_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.61244
PMC10742386-pnas.2311372120.sd05.xlsx-GCM1_ST-Gene_Symbol_GCM1	Rummagene Transcription Factor Associations 2026	1.0	null
NFIC	ENCODE Transcription Factor Targets	1.0	null
Epi	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.607
Syncytiotrophoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.589
nuclear part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041517
bacterial infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.051634
Severe pre-eclampsia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.385
vertebrate muscular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.0716
KYSE-510	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.18656
Organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.844
characteristics	GeneRIF Biological Term Annotations	1.0	null
Ovarian cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.46
Taurine dioxygenase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.835
Disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.98
Carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.507
Head	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
respiratory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.043874
Embryonal Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
NTERA-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.862938
pontine raphe nucleus	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.45667
cell projection	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.047762
pgdh	GeneRIF Biological Term Annotations	1.0	null
amyotrophic lateral sclerosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.169812
epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059645
Endoplasmic reticulum tubular network	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.625
will	GeneRIF Biological Term Annotations	1.0	null
cases	GeneRIF Biological Term Annotations	1.0	null
alleles	GeneRIF Biological Term Annotations	1.0	null
squamous epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.10096
Somatotropin Deficiency	DisGeNET Gene-Disease Associations	1.0	null
GSE174701_1_v_6_maml3_human	RummaGEO Gene Perturbation Signatures	-1.0	null
SF172	CCLE Cell Line Gene CNV Profiles	1.0	1.67677
H3K27me3_K562_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NR3C1	ENCODE Transcription Factor Targets	1.0	null
NCI-H187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09293
Infertility	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.659
chorionic cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.483986
granular layer of rostral dentate gyrus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.981564
PMC6802116-41467_2019_12517_MOESM5_ESM.xlsx-Sheet1-D9_8_GNF2-SERPINB5_CENPX	Rummagene Transcription Factor Associations 2026	1.0	null
GCIY	CCLE Cell Line Gene CNV Profiles	1.0	2.59969
nucleus of the diagonal band, left, vertical division	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.913488
Pheochromocytoma	DisGeNET Gene-Disease Associations	1.0	null
Hypertension	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.768
HPAC	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.56082
brain	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.774004
IZ in primary somatosensory cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.15309
medial subdivision of central nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.20444
VZ in caudal subicular cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.39941
MLXIPL	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.7281
HCC461	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.931285
CUX1-19635798-MULTIPLE HUMAN CANCER CELL TYPES-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
meningitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.440538
spinal cord	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.217762
trunk	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.410111
adenoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.742329
germ cell and embryonal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.355604
POLR2AphosphoS5_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
T98G	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.931285
Labyrinthine zone	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.691
Anorexia	DisGeNET Gene-Disease Associations	1.0	null
GSE169152_5_v_0_ibrutinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
H3K4me1_A549_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
FOS_MCF 10A_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
sgs cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.97935
placenta cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.219398
cerebrospinal fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.361901
Amenorrhea	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.325
chromaffin granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.06853
Embryonal carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.088
NCI-H1092	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.24958
Syncytium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.875
INSM1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.375
H3K4me1_astrocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Uterine epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.021
stimulus	GeneRIF Biological Term Annotations	1.0	null
prostate	GTEx Tissue Gene Expression Profiles	1.0	0.977051
Endometrial Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
primitive neuroectodermal tumor cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.225018
NCI-N87	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.56576
Choriocarcinoma	DisGeNET Gene-Disease Associations	1.0	null
EZH2_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
spinal column	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.288158
metabolic	GAD High Level Gene-Disease Associations	1.0	0.293278
medial preoptic nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.34816
planum polare, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.84317
NCIH2170	CCLE Cell Line Gene CNV Profiles	1.0	1.90149
supraoptic nucleus, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.04632
KMS-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.854794
Stomach carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.098
lateral medullary reticular group, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.19363
tail of caudate	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	2.13011
SIX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.4134
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01506
SNU886	CCLE Cell Line Gene CNV Profiles	1.0	1.52729
urinary tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.316224
IZ in midlateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.1381
cytoplasmic vesicle membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.549773
gut	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.230931
adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.279724
mediodorsal nucleus of thalamus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.883496
NCIH1581	CCLE Cell Line Gene CNV Profiles	-1.0	-1.4495
cognitive disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.194865
PMC11408518-41598_2024_73146_MOESM5_ESM.xlsx-Intersection_gene-NCOA1_NCOA1	Rummagene Transcription Factor Associations 2026	1.0	null
Stromal Neoplasm	DisGeNET Gene-Disease Associations	1.0	null
reproduction	GAD High Level Gene-Disease Associations	1.0	0.295739
HCC4017	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06811
thyroid cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.094979
disease of metabolism	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.046665
fibroblast cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.310421
PMC7985179__F2	PFOCR Pathway Figure Associations 2024	1.0	null
Ovarian disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.573
vesicle membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.698663
Congenital Hypogonadotropic Hypogonadism	DisGeNET Gene-Disease Associations	1.0	null
angular gyrus, right, superior bank of gyrus	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.907794
H3K4me1_mammary epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
female reproductive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.362646
NR3C1_A549_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
15280659-Table1	GeneSigDB Published Gene Signatures	1.0	null
HS 936.T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.48017
Decidua	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.85
dichorionic	GeneRIF Biological Term Annotations	1.0	null
lower	GeneRIF Biological Term Annotations	1.0	null
lung	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.228497
isobm	GeneRIF Biological Term Annotations	1.0	null
tauopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.269043
female reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
CTCF_kidney_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Ovarian Failure, Premature	HuGE Navigator Gene-Phenotype Associations	1.0	null
SNU601	CCLE Cell Line Gene CNV Profiles	1.0	2.08589
biliary tract cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.084183
Breast cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.262
Placenta cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.329
GSE202434,GSE202438_10_v_14_talazoparib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
NCI-H446	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.854794
line	GeneRIF Biological Term Annotations	1.0	null
Blastula	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.55
nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.355604
epithelioma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.249653
elevated	GeneRIF Biological Term Annotations	1.0	null
PK59	CCLE Cell Line Gene CNV Profiles	1.0	1.9968
fetal membrane	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.154011
Myometrium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.136
Immature ovarian follicle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.283
PMC8586238-41467_2021_26788_MOESM6_ESM.xlsx-S2A_CDE_genes-S2A_CDE_-_genes_of_the_two_CCD_genes_RUNX2	Rummagene Transcription Factor Associations 2026	1.0	null
Cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.875
ZNF528	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.8003
small intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.325335
thyroid cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.096482
GSE149901_3_v_0_anlotinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
Decidua basalis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.069
urinary bladder squamous cell carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.13678
inner SZ in dorsomedial frontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.21113
Kidney renal papillary cell carcinoma_KIRP_TCGA-G7-A8LC-01A-11R-A36F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC10011543-41419_2023_5707_MOESM4_ESM.xlsx-1434_proliferation_genes-ZNF766_ZNF766	Rummagene Transcription Factor Associations 2026	1.0	null
midbrain raphe nuclei, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.845211
correlates	GeneRIF Biological Term Annotations	1.0	null
Endocrine gland cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.151
Hypophysis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.019
Chorionic plate	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.793
chromosomal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.07087
H9 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.059
Ectoplacental cone	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.524
Malignant Neoplasm	DisGeNET Gene-Disease Associations	1.0	null
presence	GeneRIF Biological Term Annotations	1.0	null
nucleotide	GeneRIF Biological Term Annotations	1.0	null
pattern	GeneRIF Biological Term Annotations	1.0	null
peripheral primitive neuroectodermal tumor cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.225018
gastric mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.405935
cell part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.811193
nih-3t3 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.482038
layer IIIb of caudal entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.09035
organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.561781
CUX1	ChEA Transcription Factor Targets	1.0	null
SP in primary somatosensory cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.927895
HT1376	CCLE Cell Line Gene CNV Profiles	-1.0	-1.40701
Corpus luteum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.794
single	GeneRIF Biological Term Annotations	1.0	null
gastric antrum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.518465
JUND_HCT116_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MDAMB157	CCLE Cell Line Gene CNV Profiles	-1.0	-2.42457
Trophoblastic neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.998
choroid plexus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.19636
cell	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.811193
conceptus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.315498
Stomach cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.556
embryonic fibroblast cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.397222
Thyrotoxicosis In Pregnancy	DisGeNET Gene-Disease Associations	1.0	null
Neoplasm Metastasis	DisGeNET Gene-Phenotype Associations	1.0	null
parasubicular cortex (parasubiculum)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.01046
prepositus hypoglossal nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.873551
TEN	CCLE Cell Line Gene CNV Profiles	-1.0	-1.35545
NCI-H2595	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.853626
urinary bladder cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.167343
ZR-75-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.75116
inner CP in posterosuperior (dorsal) parietal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.970102
Tobacco Use Disorder	HuGE Navigator Gene-Phenotype Associations	1.0	null
TEAD4_01_151	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	1.05228
inherited metabolic disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.049665
free	GeneRIF Biological Term Annotations	1.0	null
NCI-H2126	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.85622
Sertoli cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.997
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
fetus	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	1.53602
GSE146687_2_v_5_eribulin_human	RummaGEO Drug Perturbation Signatures	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4352-01A-01R-1289-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
att-20 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.399492
GSE202744_1_v_0_toyocamycin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
RARB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.2196
molecular layer of rostral subiculum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.23301
MGA::EVX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.1645
GSE168097_1_v_2_epinephrine_human	RummaGEO Drug Perturbation Signatures	1.0	null
Burkitt Lymphoma	DisGeNET Gene-Disease Associations	1.0	null
blastomere	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.18962
PMC8350598-NIHMS1728503-supplement-Table_S3.xlsx-Upregulated_by_SMAD4-Gene_Symbol_SMAD4	Rummagene Transcription Factor Associations 2026	1.0	null
HTR-8/SVneo cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.071
Gastric Adenocarcinoma	DisGeNET Gene-Disease Associations	1.0	null
RARG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.7449
thoracic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.516879
organism form	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	1.53602
cartilage	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.100585
inferior nucleus of pulvinar	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.881112
gonadotropin	GeneRIF Biological Term Annotations	1.0	null
GSE196259_2_v_3_gcm1_human	RummaGEO Gene Perturbation Signatures	1.0	null
intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.35334
NCO2	CCLE Cell Line Gene CNV Profiles	1.0	1.52454
Adrenocortical carcinoma_ACC_TCGA-OR-A5K5-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hypoglossal nucleus, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.86008
Cervix disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.289
pregnancyinduced	GeneRIF Biological Term Annotations	1.0	null
require	GeneRIF Biological Term Annotations	1.0	null
PMC10891378-tau-13-01-91-supplementary.pdf-86-TCF7_TCF7	Rummagene Transcription Factor Associations 2026	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-ER-A2ND-06A-11R-A18T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Pancreatic adenocarcinoma_PAAD_TCGA-IB-7890-01A-12R-2204-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCI-H1623	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.70166
nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.942215
inner CP in caudal perirhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.35678
terminal loop	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.213669
H3K9ac_astrocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
RXRB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	66.9827
Endometriosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.321
vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.34447
GSE169152_5_v_4_ibrutinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Kidney disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.273
Hypogonadotropic hypogonadism	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.006
immune system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.041399
bone	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.090136
mestizo	GeneRIF Biological Term Annotations	1.0	null
hypertension	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.215314
Prostate adenocarcinoma_PRAD_TCGA-XJ-A9DQ-01A-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Choriocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.55
EN	CCLE Cell Line Gene CNV Profiles	-1.0	-1.90832
Teratoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.275
Extraembryonic tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.352
SW 1463	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.81749
against	GeneRIF Biological Term Annotations	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-QU-A6IM-01A-11R-A31N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-S9-A7IX-01A-12R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-4688-01A-01R-1277-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
pituitary gland cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.60249
Benign Prostatic Hyperplasia	DisGeNET Gene-Disease Associations	1.0	null
H3K4me3_HCT116_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
TCF12_ECC-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
JUND	ENCODE Transcription Factor Targets	1.0	null
REST	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	73.9114
TCF12_ECC-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
brain stem	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.872749
Mature ovarian follicle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.754
IZ in posterior parahippocampal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.918084
again	GeneRIF Biological Term Annotations	1.0	null
YMB1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.56158
imprinting	GeneRIF Biological Term Annotations	1.0	null
abortion, habitual; infertility, female	GAD Gene-Disease Associations	1.0	null
HOP-62	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.880844
Trophoblastic Tumor, Placental Site	DisGeNET Gene-Disease Associations	1.0	null
control	GeneRIF Biological Term Annotations	1.0	null
GSE182179_2_v_3_kdsr_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE223893_2_v_10_setd2_human	RummaGEO Gene Perturbation Signatures	1.0	null
leukocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055577
skeletal muscle cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.327164
r95	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.841
inner SZ in medial temporal-occipital cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.849661
H3K4me2_A549_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
infiltrative	GeneRIF Biological Term Annotations	1.0	null
superior parietal lobule, right, inferior bank of gyrus	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.85929
present	GeneRIF Biological Term Annotations	1.0	null
EZH2	ENCODE Transcription Factor Targets	1.0	null
GSE229070,GSE229071_0_v_2_sotorasib_human	RummaGEO Drug Perturbation Signatures	1.0	null
Curli	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.667
Bladder Urothelial Carcinoma_BLCA_TCGA-FD-A62S-01A-11R-A30C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Prolactinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.26
496100383_HIP_no dementia_no TBI_95-99_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.6788
NORETHINDRONE ACETATE	DGIdb Drug Targets 2026	1.0	1.30696
Germinal disc	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.386
M07E	CCLE Cell Line Gene CNV Profiles	1.0	1.37536
esophageal carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.141122
spaced	GeneRIF Biological Term Annotations	1.0	null
reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
enhance	GeneRIF Biological Term Annotations	1.0	null
CTCFL	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.9089
neuroblastoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.07461
NCIH1623	CCLE Cell Line Gene CNV Profiles	1.0	1.60462
endocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.22336
primitive neuroectodermal tumor cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.61941
Amnion epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.646
trophoblast cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.221989
Organism form	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
basophil	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.312232
neural plate	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.170555
Complete Trisomy 18 Syndrome	DisGeNET Gene-Disease Associations	1.0	null
abomasum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.393064
superior occipital gyrus, right, inferior bank of gyrus	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.45601
HEC-1-A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.30105
thyroid cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.105567
cell property	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.074306
RI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.39415
GFI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.3774
clonec6/36	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.56
FOS_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
squamous cell carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.109194
cgb5	GeneRIF Biological Term Annotations	1.0	null
Transitional cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.188
Cartilage-Hair Hypoplasia	DisGeNET Gene-Disease Associations	1.0	null
CREB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.5142
placenta	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Male infertility	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.222
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-C5-A1BN-01B-11R-A14Y-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Thoracic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.261
METHYLENE BLUE ANHYDROUS	DGIdb Drug Targets 2026	1.0	1.47033
Heart Failure	DisGeNET Gene-Disease Associations	1.0	null
lateral hypothalamic area, anterior region, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.87167
Myxoid Cyst	DisGeNET Gene-Disease Associations	1.0	null
trophoblastic neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.227988
Adrenal Cushing'S Syndrome	DisGeNET Gene-Disease Associations	1.0	null
SG in temporal polar cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.53734
polymorphism	GeneRIF Biological Term Annotations	1.0	null
GSE221577_2_v_0_pik3r1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE130396_1_v_6_neratinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
scaber cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.13678
Cardiovascular system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.572
lack	GeneRIF Biological Term Annotations	1.0	null
GSE235701,GSE261434_2_v_1_enasidenib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
U-2932	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.16071
JHOS2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.51135
SUM 52PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.39778
GSE118816_2_v_3_myo1c_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE111247_14_v_13_temozolomide_human	RummaGEO Drug Perturbation Signatures	1.0	null
embryonic structure	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	1.53602
PITX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.4076
animal	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	1.53602
Trophoblast cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.975
SUPT1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.24828
GSE239844_7_v_9_crizotinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
PMC7005888-41598_2020_58845_MOESM2_ESM.xlsx-Insulinoma-INSM1_INSM1	Rummagene Transcription Factor Associations 2026	1.0	null
EEF1G	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-7.82121
20460173-ImmPortCytokines	GeneSigDB Published Gene Signatures	1.0	null
H3K4me1_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
gastric gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.186168
cuneus, right, striate	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.34819
semen	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.153686
Nervous system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
TFAP2A	JASPAR Predicted Transcription Factor Targets	1.0	null
Uterine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.533
ZBTB33_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Amniotic cavity	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.881
Megagametophyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.841
brain	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Glomerulosclerosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.065
OLIG2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.0757
dorsal motor nucleus of the vagus, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.29792
Complete Hydatidiform Mole	DisGeNET Gene-Disease Associations	1.0	null
central nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.364454
Adenoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.3
offspring	GeneRIF Biological Term Annotations	1.0	null
15954879-Table6	GeneSigDB Published Gene Signatures	1.0	null
embryonic fibroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.137042
organic acidemia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.214636
before	GeneRIF Biological Term Annotations	1.0	null
golgi apparatus part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.088411
TCF12	ENCODE Transcription Factor Targets	1.0	null
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.29489
Gestational diabetes	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.19
stratum lucidum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.44181
internal female genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.768197
PMC12304111-41598_2025_13196_MOESM5_ESM.xlsx-Sheet_1-Table_S4_DEGs_Log2FC_1_and_p_adj_0_05_in_pancreatic_cancer_with_high_versus_low_OVOL1_expression_OVOL1	Rummagene Transcription Factor Associations 2026	1.0	null
PMC10742386-pnas.2311372120.sd05.xlsx-DLX3_ST-Gene_Symbol_DLX3	Rummagene Transcription Factor Associations 2026	1.0	null
PANC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.931285
Cytotrophoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.545
ventricular (matrix) zone of pons	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.92505
body	GeneRIF Biological Term Annotations	1.0	null
ZBTB33	ENCODE Transcription Factor Targets	1.0	null
aim	GeneRIF Biological Term Annotations	1.0	null
Epiblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.39
Respiratory system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.033
Pancreatic adenocarcinoma_PAAD_TCGA-HZ-A77O-01A-11R-A33R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ewing's family tumor cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.14755
496100505_TCx_possible Alzheimer's disease_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.30964
upper respiratory tract disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.054427
CCK-81	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GSE217452_2_v_1_docetaxel_human	RummaGEO Drug Perturbation Signatures	1.0	null
Visceral endoderm	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.76
Germ cell and embryonal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.746
stratum pyramidale of caudal CA1	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.871425
HCC1897	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33699
especially	GeneRIF Biological Term Annotations	1.0	null
hemorrhagic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.082707
NCI-H1838	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06921
Decidua parietalis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.743
496100592_FWM_no dementia_no TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.15055
cerebellum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.962039
Disease by infectious agent	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.1
betacleavage	GeneRIF Biological Term Annotations	1.0	null
Reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.982
paraventricular nucleus of the hypothalamus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.997617
TM-4 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.959
embryonic structure	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
pyelonephritis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.175411
YY1	JASPAR Predicted Transcription Factor Targets	1.0	null
Gonadotrophic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.478
dense core granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.704831
transcription	GeneRIF Biological Term Annotations	1.0	null
stomach	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.362646
after	GeneRIF Biological Term Annotations	1.0	null
head	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
YMB-1-E	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.75014
Carcinoma Of Urinary Bladder, Invasive	DisGeNET Gene-Disease Associations	1.0	null
Disease of metabolism	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.037
G-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01506
outer SZ in dorsomedial frontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.53158
barrett's adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.524974
H3K4me2_astrocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
td7	GeneRIF Biological Term Annotations	1.0	null
GSE196259_2_v_0_gcm1_human	RummaGEO Gene Perturbation Signatures	1.0	null
esophagus adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.311014
Embryonal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.073
PMC12822963-pone.0339296.s005.xlsx-Sheet1-HIF1A_HIF1A	Rummagene Transcription Factor Associations 2026	1.0	null
GSE231720,GSE231724_2_v_0_setd2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.29624
Prostate adenocarcinoma_PRAD_TCGA-FC-A66V-01A-21R-A30B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
sk-n-sh cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.188289
Cell surface furrow	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.024
HCC1195	CCLE Cell Line Gene CNV Profiles	-1.0	-2.38666
trophoblasts	GeneRIF Biological Term Annotations	1.0	null
TRRAP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.24293
Pituitary gonadotropin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.603
wnt7b	GeneRIF Biological Term Annotations	1.0	null
ectoderm	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.093855
Congenital Adrenal Hyperplasia	DisGeNET Gene-Disease Associations	1.0	null
Decidual cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.266
organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.891631
Trophoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.664
PMC11528209-cd-23-1212_supplementary_table_s7_suppst7.xlsx-A549_EML4_KD_DEGs-List_of_DEGs_of_EML4-knockdown_vs_control_A549_cells_AR	Rummagene Transcription Factor Associations 2026	1.0	null
opportunistic mycosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.873691
lateral habenular nucleus, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.5041
nucleus	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.174361
RMUGS	CCLE Cell Line Gene CNV Profiles	1.0	1.98535
KCI-MOH1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.87527
Yolk Sac Tumor	DisGeNET Gene-Disease Associations	1.0	null
ribonucleoprotein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.045618
Testicular Germ Cell Tumor	DisGeNET Gene-Disease Associations	1.0	null
Amnion epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.623
pancreatic islet	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.314772
POLR2A	ENCODE Transcription Factor Targets	1.0	null
Rectum adenocarcinoma_READ_TCGA-F5-6861-01A-11R-1928-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
chromosomal part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.04459
UMC-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.70656
Conceptus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.8
prostate gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.558457
TSH producing pituitary tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.331
Congenital disorder of glycosylation type IIa	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.445
Prostate adenocarcinoma_PRAD_TCGA-HC-A8D0-01A-11R-A36G-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
whole body	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Uterine cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.862
cochlear nuclei, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.36946
twins	GeneRIF Biological Term Annotations	1.0	null
Adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.232
Tnf Receptor-Associated Periodic Fever Syndrome (Traps)	DisGeNET Gene-Disease Associations	1.0	null
Adult Yolk Sac Tumor	DisGeNET Gene-Disease Associations	1.0	null
Anterior lobe	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.458
Acute Myeloid Leukemia_LAML_TCGA-AB-2812-03A-01T-0734-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Blastocyst	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.9
VZ in midlateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.32882
LS123	CCLE Cell Line Gene CNV Profiles	1.0	1.82894
villus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.341495
snail	GeneRIF Biological Term Annotations	1.0	null
Brain	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
HGC-27 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.643
antagonists	GeneRIF Biological Term Annotations	1.0	null
pre-eclampsia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.133574
Bladder Urothelial Carcinoma_BLCA_TCGA-FD-A43Y-01A-21R-A26T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RXRG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	68.8891
Junctional zone	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.058
AGS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.50056
Pituitary gland disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.335
okl38	GeneRIF Biological Term Annotations	1.0	null
GSE82032_3_v_2_trametinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
towards	GeneRIF Biological Term Annotations	1.0	null
dementia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.266558
GSE130396_8_v_6_neratinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-60-2708-01A-01R-0851-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
FOS_MCF 10A_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
chorion	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.187531
Female reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
standardization	GeneRIF Biological Term Annotations	1.0	null
sh-sy5y cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.33965
ZSCAN21	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.3675
sp3	GeneRIF Biological Term Annotations	1.0	null
large intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.301039
KARPAS299	CCLE Cell Line Gene CNV Profiles	-1.0	-1.93797
GSE128730_0_v_2_neratinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
granular vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.195681
Thoracic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.258
outer portion of medial ganglionic eminence	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.983641
PMC12019518-ao5c02459_si_002.xlsx-Table_S3-Table_S3_Screening_of_genes_that_are_commonly_upregulated_in_cells_on_stiff_substrate_and_down-regulated_by_KD_of_UBE2A_B_AR	Rummagene Transcription Factor Associations 2026	1.0	null
FOS	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.0515
Pineal Germinoma	DisGeNET Gene-Disease Associations	1.0	null
NR3C1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.106
Rectum adenocarcinoma_READ_TCGA-DC-6155-01A-11R-1660-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hypophysis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.939206
nervous system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Inhibin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.412
anaplastic thyroid cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.227186
urinary bladder	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.158099
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-GR-7351-01A-11R-2213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
corticotropic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.276145
Lung disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.062
Spongiotrophoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.333
H3K27me3_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
gigantocellular reticular nuclei	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.827383
fetus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.89732
PRPF19	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.28571
pc-12 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.1869
Villous trophoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.006
RI1	CCLE Cell Line Gene CNV Profiles	1.0	1.99425
gain	GeneRIF Biological Term Annotations	1.0	null
OV-90	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.64425
cytoplasm	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.906926
medial superior olive	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.00424
pancreas adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.138591
JAR cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.87
PMC11167905-10194_2024_1805_MOESM1_ESM.xlsx-S6-Table_S6_MR_results_of_brain_eQTLs_and_migraine_NR3C2	Rummagene Transcription Factor Associations 2026	1.0	null
antral mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.610138
Kidney Chromophobe_KICH_TCGA-KN-8430-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE210870_0_v_1_snai1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.32325
kidney disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.053358
em3	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.841
ETV5::HOXA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.0487
fibre tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.215534
PMC11442894-41467_2024_52678_MOESM5_ESM.xlsx-all_MSC_vs_iMPC-Unnamed_0_MSC	Rummagene Transcription Factor Associations 2026	1.0	null
intracellular part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.836433
severe pre-eclampsia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.144954
epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054363
hematopoietic system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.04505
Urinary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.506
Gestational choriocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.029
Breast Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
SUM 1315M02	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.880844
Extravillous trophoblast cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.715
SPNS1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.5917
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-G8-6914-01A-11R-2213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
pregnancy	GeneRIF Biological Term Annotations	1.0	null
lateral ventricle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.157965
superior rostral gyrus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.23792
POLR2AphosphoS5_U-87 MG_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cryptococcosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.39433
Gonadal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.709
secretory cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.17713
Activin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.578
OCI-M2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29817
lymphoid tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.238706
MHH-NB-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1936
GSE168097_3_v_2_epinephrine_human	RummaGEO Drug Perturbation Signatures	1.0	null
Kidney renal papillary cell carcinoma_KIRP_TCGA-MH-A856-01A-11R-A355-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
female reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.048099
dorsal motor nucleus of the vagus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.69744
TMD8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.16071
CHO cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.633
ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.906
SKNDZ	CCLE Cell Line Gene CNV Profiles	-1.0	-1.6561
FOS	ENCODE Transcription Factor Targets	1.0	null
mouth disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.065075
NCI-H23	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06921
skeletal muscle cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.12488
MITF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.6769
Diabetes Mellitus	DisGeNET Gene-Disease Associations	1.0	null
corpus callosum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.6047
GSE239844_7_v_0_crizotinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
duodenum	HPA Tissue Gene Expression Profiles	1.0	0.855737
gh4-c1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.61175
Tumor Cell Invasion	DisGeNET Gene-Phenotype Associations	1.0	null
breast	GeneRIF Biological Term Annotations	1.0	null
Mediastinal B-Cell Lymphoma	DisGeNET Gene-Disease Associations	1.0	null
Lower respiratory tract disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.075
choriocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.220081
hematopoietic system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.60249
endocrine organ benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.069571
Adrenal cortex cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.414
cytoplasmic membrane-bounded vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.47231
Vascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.561
TCF21	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.9381
Puberty, Precocious	HuGE Navigator Gene-Phenotype Associations	1.0	null
GSE174701_4_v_8_maml3_human	RummaGEO Gene Perturbation Signatures	1.0	null
Carcinoma, Ovarian Epithelial	DisGeNET Gene-Disease Associations	1.0	null
Adrenocortical carcinoma_ACC_TCGA-OR-A5KV-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-FD-A3B6-01A-21R-A20F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
administration	GeneRIF Biological Term Annotations	1.0	null
AN3 CA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07717
fetus	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Ectopic pregnancy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.817
Small Cell Carcinoma Of Lung	DisGeNET Gene-Disease Associations	1.0	null
Artery disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.642
nuc1	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.539
H3K4me2_mammary epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
REST	ENCODE Transcription Factor Targets	1.0	null
neuroendocrine cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.73678
Chorionic cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.55
Uterine endometrial epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.309
cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.792951
OCI-LY-10	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2479
cardiovascular system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.044096
constitute	GeneRIF Biological Term Annotations	1.0	null
cuneate nucleus, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.893272
Genetic Predisposition to Disease	HuGE Navigator Gene-Phenotype Associations	1.0	null
intracellular	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.82863
NCI-H250	COSMIC Cell Line Gene CNV Profiles	1.0	3.12177
occipito-temporal gyrus, right, inferior bank of gyrus	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.30839
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.940585
Chromosomal duplication syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.156
blood coagulation disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.061236
reproductive system	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.069119
Breast Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
hcgbeta5	GeneRIF Biological Term Annotations	1.0	null
skin	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.341495
vestibular nuclei, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.858742
noncancerous	GeneRIF Biological Term Annotations	1.0	null
Disorder of sexual development	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.157
RL	CCLE Cell Line Gene CNV Profiles	-1.0	-2.05811
investigation	GeneRIF Biological Term Annotations	1.0	null
GSE178714_1_v_7_smad2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
RPMI 8226	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06921
nerve	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.643263
Complete Trisomy 21 Syndrome	DisGeNET Gene-Disease Associations	1.0	null
Ovarian Hyperstimulation Syndrome	DisGeNET Gene-Disease Associations	1.0	null
NCI-H345	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.862938
blood plasma	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.448731
agonists	GeneRIF Biological Term Annotations	1.0	null
male reproductive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.474258
bladder	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.137348
Kidney renal papillary cell carcinoma_KIRP_TCGA-AL-A5DJ-01A-11R-A26U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
portions	GeneRIF Biological Term Annotations	1.0	null
Viral labyrinthitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.155
small intestine	GTEx Tissue Gene Expression Profiles	-1.0	-1.00661
KP-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06811
SNU-719	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00107
gastrointestinal tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.492182
beta	GeneRIF Biological Term Annotations	1.0	null
Sclerocystic Ovaries	DisGeNET Gene-Disease Associations	1.0	null
cv-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.211406
superior colliculus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-2.57111
Dermatofibroma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.641
PMC12436147-41380_2025_3032_MOESM1_ESM.xlsx-ST2-Supplementary_Table2_Blood_pQTLs_that_were_selected_as_genetic_instruments_for_MR_analyses_UKB_NR3C2	Rummagene Transcription Factor Associations 2026	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-GF-A3OT-06A-23R-A239-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
thrombocytopenia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.137967
VZ in hypothalamic portion	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.75121
GSE174701_4_v_3_maml3_human	RummaGEO Gene Perturbation Signatures	1.0	null
NCI-H1651	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.24958
neuron	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.591641
downregulation	GeneRIF Biological Term Annotations	1.0	null
maternal	GeneRIF Biological Term Annotations	1.0	null
tumours	GeneRIF Biological Term Annotations	1.0	null
KARPAS-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.20302
Leukemia	DisGeNET Gene-Disease Associations	1.0	null
GSE149901_2_v_0_anlotinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE79572_0_v_1_pax8_human	RummaGEO Gene Perturbation Signatures	1.0	null
status	GeneRIF Biological Term Annotations	1.0	null
T-47D	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06921
Kidney renal papillary cell carcinoma_KIRP_TCGA-B3-4104-01A-02R-1351-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Plant ovule	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.836
specific	GeneRIF Biological Term Annotations	1.0	null
higher	GeneRIF Biological Term Annotations	1.0	null
Obesity	HuGE Navigator Gene-Phenotype Associations	1.0	null
transport vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.06498
organism form	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
BeWo cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.386
prostate adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.18472
proventriculus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.354455
reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.048529
gastrointestinal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.057173
Prostate adenocarcinoma_PRAD_TCGA-HC-7742-11A-01R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
POLR2AphosphoS5_HCT116_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
15452378-Table2	GeneSigDB Published Gene Signatures	1.0	null
layer III of rostral entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.04182
Cervical mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.843
MZ in temporal polar cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.07791
20460173-ImmPortComprehensiveListofImmune-RelatedGenes	GeneSigDB Published Gene Signatures	1.0	null
ovary	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062838
Pituitary gland benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.514
NCIH2452	CCLE Cell Line Gene CNV Profiles	-1.0	-1.58308
AN3CA	CCLE Cell Line Gene CNV Profiles	1.0	1.5824
gallbladder cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.162306
placenta	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.964199
Reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
PMC9733061-13059_2022_2800_MOESM5_ESM.xlsx-Table_S4-Table_S4_Genes_assigned_to_JUNB_binding_sites_Each_peak_was_assigned_to_the_nearest_TSS_JUNB	Rummagene Transcription Factor Associations 2026	1.0	null
preeclampsia	GeneRIF Biological Term Annotations	1.0	null
low	GeneRIF Biological Term Annotations	1.0	null
Endometrial cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.211
follicle-stimulating hormone complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.398
Dysmenorrhea	DisGeNET Gene-Phenotype Associations	1.0	null
Endometrial spiral artery	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.558
endocrine pancreas	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.516891
humans	GeneRIF Biological Term Annotations	1.0	null
urinary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.048232
artery disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.052169
Abortion, Habitual	HuGE Navigator Gene-Phenotype Associations	1.0	null
Gastrointestinal Carcinoid Tumor	DisGeNET Gene-Disease Associations	1.0	null
Choriocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.33
PAX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.907
Lung cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.043
breast carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.306672
colorectum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.219707
Inherited metabolic disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.015
JEG-3 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.189
Decidual stromal cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.06
KLE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.862938
NCCIT cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.712
uterus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.067184
U87MG	CCLE Cell Line Gene CNV Profiles	-1.0	-1.72603
OSR2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.1668
lateral medullary reticular group, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.967419
placenta	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	1.53602
central part of CEl	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.96438
benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.660404
serum	GeneRIF Biological Term Annotations	1.0	null
Testicular cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.204
TCEAL7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.51415
nucleoplasm	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.199659
paternal	GeneRIF Biological Term Annotations	1.0	null
HCC4011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06921
Thrombophilia	HuGE Navigator Gene-Phenotype Associations	1.0	null
Gynecomastia	DisGeNET Gene-Disease Associations	1.0	null
ventricular (matrix) zone of cerebellum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.43798
fungal infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.817565
digestive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.361901
RMG-I	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2509
lateral ganglionic eminence	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.853265
MZ in superolateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.11282
GSE111247_14_v_6_temozolomide_human	RummaGEO Drug Perturbation Signatures	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-85-A50M-01A-21R-A262-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Hyperandrogenism	DisGeNET Gene-Disease Associations	1.0	null
breast cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.517265
cytotrophoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.813979
MAX_HCT116_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-XJ-A9DI-01A-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Endometrial glandular epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.755
PMC7591516-41467_2020_18955_MOESM6_ESM.xlsx-Overlap_DEGs_MSC_Diff_GCTB-Symbol_MSC	Rummagene Transcription Factor Associations 2026	1.0	null
HCC1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.92457
cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.544318
Granulosa cell tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.32
NCIH2126	CCLE Cell Line Gene CNV Profiles	1.0	3.2803
related	GeneRIF Biological Term Annotations	1.0	null
CHO-K1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.933
Disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.917
Granulosa cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.29
NEUROD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8677
anterior lobe	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.378748
RARA::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	60.3913
Bark	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.633
FOSL2	ENCODE Transcription Factor Targets	1.0	null
metencephalon	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.957722
hi-5 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.71501
Lung squamous cell carcinoma_LUSC_TCGA-68-7757-01B-11R-2296-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lymphoma	DisGeNET Gene-Disease Associations	1.0	null
GSE135400_1_v_0_kdm1b_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Cef cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.193
FOSL2_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Trophoblast stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.161
trans-golgi network	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.874107
Acute Myeloid Leukemia	DisGeNET Gene-Disease Associations	1.0	null
epidermis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.33413
paraventricular nuclei, right of thalamus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	2.26111
Diffuse Large B-Cell Lymphoma	DisGeNET Gene-Disease Associations	1.0	null
esophageal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.139375
NCIH1781	CCLE Cell Line Gene CNV Profiles	-1.0	-1.48349
Dynein axonemal particle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.622
Infertility, Female	HuGE Navigator Gene-Phenotype Associations	1.0	null
neck	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.120742
Male reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.171
Trophoblast stem cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.438
OVCAR-3 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.059
proximal	GeneRIF Biological Term Annotations	1.0	null
adenocarcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.242983
Ciliary neurotrophic factor receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.52
ONS76	CCLE Cell Line Gene CNV Profiles	-1.0	-1.43821
pituitary gland tumor cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.605709
membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.90089
SP in rostral perirhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.876532
inner CP in temporal polar cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.9327
NIHOVCAR3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.40882
differentiating	GeneRIF Biological Term Annotations	1.0	null
NCI-H1573	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35067
TEAD1	JASPAR Predicted Transcription Factor Targets	1.0	null
SW 1417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.20302
choriocarcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.192733
miliary tuberculosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.65565
increasing	GeneRIF Biological Term Annotations	1.0	null
Placenta	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.371
POU2F2_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-EB-A4OZ-01A-12R-A266-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
pheochromocytoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.426109
upregulating	GeneRIF Biological Term Annotations	1.0	null
WIDR	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.940585
Female reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.985
central medullary reticular group, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.92242
H2AFZ_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
skeletal system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.079162
Ovarian hyperstimulation syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.52
NCI-H847	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.927017
HNF4A	JASPAR Predicted Transcription Factor Targets	1.0	null
POLR2A_H54_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
gestational trophoblastic neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.260538
H3K4me1_osteoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
bewo	HPA Cell Line Gene Expression Profiles	1.0	1.69094
EFM192A	CCLE Cell Line Gene CNV Profiles	1.0	1.33976
NCIN87	CCLE Cell Line Gene CNV Profiles	1.0	1.57898
RT4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1034
Rectum adenocarcinoma_READ_TCGA-AH-6644-01A-21R-1830-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
pre-eclampsia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.257
organ system benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.041747
mta3	GeneRIF Biological Term Annotations	1.0	null
disease of mental health	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.048378
mouse	GeneRIF Biological Term Annotations	1.0	null
ovulatory	GeneRIF Biological Term Annotations	1.0	null
496100353_HIP_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.28345
Empty Follicle Syndrome	DisGeNET Gene-Disease Associations	1.0	null
496100523_HIP_possible Alzheimer's disease_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.87448
medial habenular nucleus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.67947
HELLP syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.069
Blastomere	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.215
Ovarian Neoplasm	DisGeNET Gene-Disease Associations	1.0	null
hESC cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.471
carrier	GeneRIF Biological Term Annotations	1.0	null
parathyroid gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.640023
central nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.815233
Anovulation	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.009
Pituitary gonadotropin complex	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
OVSAHO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.999765
Bladder Urothelial Carcinoma_BLCA_TCGA-GD-A3OQ-01A-32R-A220-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
belt	GeneRIF Biological Term Annotations	1.0	null
pheochromocytoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.1829
throat	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.24052
ZNF768	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.8844
TCF3	ENCODE Transcription Factor Targets	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-KQ-A41N-01A-11R-A33J-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Placental insufficiency	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.249
precuneus, right, superior lateral bank of gyrus	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.24151
inner SZ in posterior parahippocampal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.896164
cerebellar nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.239307
ZBTB33_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
neuroepithelioma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.176026
Organ system benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.245
neurodegenerative disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.259477
15656903-SuppTable1	GeneSigDB Published Gene Signatures	1.0	null
Uterine disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.918
pancreatic carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.132204
cytoplasmic vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.46608
MZ in primary auditory cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.14109
combination	GeneRIF Biological Term Annotations	1.0	null
plasma	GeneRIF Biological Term Annotations	1.0	null
Villous syncytiotrophoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.277
secretory granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.55537
jeg3	GeneRIF Biological Term Annotations	1.0	null
pituitary gland tumor cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.444115
Ovarian follicle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.769
amino acid metabolic disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.08495
GSE187006_0_v_2_valproic acid_human	RummaGEO Drug Perturbation Signatures	1.0	null
PMC5691083-41467_2017_859_MOESM6_ESM.xlsx-FOLD_CHANGE_1_5_RELB-Unnamed_1_RELB	Rummagene Transcription Factor Associations 2026	1.0	null
POU2F2	ENCODE Transcription Factor Targets	1.0	null
Respiratory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.12
uterine endometrium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.25858
enterochromaffin-like cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.45374
H2AFZ_mammary epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
agonist	GeneRIF Biological Term Annotations	1.0	null
other	GeneRIF Biological Term Annotations	1.0	null
ahl1	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.568
VZ in thalamic region	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.66041
NCI-H1581	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.49924
Placenta	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
phaeochromocytoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.315729
GSE202434,GSE202438_10_v_5_talazoparib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
tonsillitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.300173
POU6F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.311
germ cell cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.411283
EBF1_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
addition	GeneRIF Biological Term Annotations	1.0	null
CX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.939416
GABPA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.4156
cervicovaginal fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.178092
MAX_ECC-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
genotyped	GeneRIF Biological Term Annotations	1.0	null
chorionic	GeneRIF Biological Term Annotations	1.0	null
HCC1534	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.880844
Adrenal Gland Pheochromocytoma	DisGeNET Gene-Disease Associations	1.0	null
Bladder disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.306
GSE188458_2_v_1_hydrogen peroxide_human	RummaGEO Drug Perturbation Signatures	1.0	null
skeletal muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.084298
Dinoflagellate cingulum	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.041
differ	GeneRIF Biological Term Annotations	1.0	null
ZNF816	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	49.7417
hellp syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.359657
app	GeneRIF Biological Term Annotations	1.0	null
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-EK-A2IP-01A-11R-A180-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Testicular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.122
Endometrial stromal cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.916
rare	GeneRIF Biological Term Annotations	1.0	null
OCI-LY-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.940585
3-methylcrotonyl-coa carboxylase deficiency	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.985164
ventral posterior medial nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.06273
Urinary system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.417
pancreatic ductal adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.145442
diagnosis	GeneRIF Biological Term Annotations	1.0	null
PMC9124206-41419_2022_4940_MOESM8_ESM.xlsx-DEG_PACA-CA-geneName_PTF1A	Rummagene Transcription Factor Associations 2026	1.0	null
whole body	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.010612
Trisomy 18 Syndrome	DisGeNET Gene-Disease Associations	1.0	null
SP in caudal perirhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.01051
allelic	GeneRIF Biological Term Annotations	1.0	null
Seminoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.394
Urinary bladder cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.314
hcg	GeneRIF Biological Term Annotations	1.0	null
Amnion	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.164
blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.534647
demonstrated	GeneRIF Biological Term Annotations	1.0	null
Kidney renal papillary cell carcinoma_KIRP_TCGA-J7-A8I2-01A-12R-A36F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
carcinogenesis	GeneRIF Biological Term Annotations	1.0	null
different	GeneRIF Biological Term Annotations	1.0	null
beta5	GeneRIF Biological Term Annotations	1.0	null
endomembrane system	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.367006
NCCSTCK140	CCLE Cell Line Gene CNV Profiles	1.0	1.77119
GSE218727_2_v_3_zkscan3_human	RummaGEO Gene Perturbation Signatures	-1.0	null
PMC7708794-mmc2.xlsx-DGE_table_Imm-high_vs_Imm-low-TFT_TBXT	Rummagene Transcription Factor Associations 2026	1.0	null
SNU620	CCLE Cell Line Gene CNV Profiles	1.0	1.35606
Functioning pituitary adenoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.303
SBC-3	COSMIC Cell Line Gene Mutation Profiles	1.0	null
HCC827	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.999765
PBX3_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
viscus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.04005
Stomach Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
laminin-11 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.952
VZ in caudal midinferior temporal cortex (area TF)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.29771
496100527_FWM_possible Alzheimer's disease_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.61274
central gray of the pons, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.10809
SW1417	CCLE Cell Line Gene CNV Profiles	1.0	1.37288
thyroid gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.261624
Placental disc	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.872
Inhibin B complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.995
factors	GeneRIF Biological Term Annotations	1.0	null
respiratory system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.217974
SKM1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.45802
MV-4-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.904732
Endometrial gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.029
IZ in subgenual (subcallosal) cingulate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.973342
betasubunit	GeneRIF Biological Term Annotations	1.0	null
urogenital system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
precentral gyrus, right, bank of the central sulcus	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.968819
prepregnancy	GeneRIF Biological Term Annotations	1.0	null
Trophectoderm	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.052
H2AFZ_astrocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
negatively	GeneRIF Biological Term Annotations	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-G9-6385-01A-11R-1789-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4770-01A-01R-1503-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-98-8020-01A-11R-2247-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE210870_0_v_2_snai1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Chorion	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.165
polysensory temporal cortex (area 22p)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.8734
H3K27ac_astrocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Germinoma	DisGeNET Gene-Disease Associations	1.0	null
plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.21673
integument	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.61941
thorax	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.298524
expressional	GeneRIF Biological Term Annotations	1.0	null
leading	GeneRIF Biological Term Annotations	1.0	null
Trophoblast giant cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.352
Gastrointestinal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.417
mexican	GeneRIF Biological Term Annotations	1.0	null
chromatin	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.071674
zygote	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.187443
PMC10742386-pnas.2311372120.sd05.xlsx-GCM1_EVT-Gene_Symbol_GCM1	Rummagene Transcription Factor Associations 2026	1.0	null
gonadotrophic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.309697
PBX3	ENCODE Transcription Factor Targets	1.0	null
neuroblastoma	GeneRIF Biological Term Annotations	1.0	null
Chorion frondosum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.972
extrapulmonary tuberculosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.225917
culture medium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.311145
monochorionic	GeneRIF Biological Term Annotations	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-H9-A6BX-01A-31R-A311-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
germ layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.066658
Fetal membrane	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.993
MAX	ENCODE Transcription Factor Targets	1.0	null
contribute	GeneRIF Biological Term Annotations	1.0	null
Pheochromocytoma and Paraganglioma_PCPG_TCGA-SQ-A6I4-01A-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cell culture	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.564434
Galectin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.312
A172	CCLE Cell Line Gene CNV Profiles	-1.0	-1.65315
protection	GeneRIF Biological Term Annotations	1.0	null
antropyloric mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.595656
kidney	GTEx Tissue Gene Expression Profiles	-1.0	-1.00661
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.6883
Bacterial biofilm matrix	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.665
glial cell projection	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.112972
GSE218727_2_v_1_zkscan3_human	RummaGEO Gene Perturbation Signatures	1.0	null
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.939416
POLR2A_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
IZ in orbital frontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.23696
PMC11611169-pone.0314092.s001.docx-3-PPARG_PPARG	Rummagene Transcription Factor Associations 2026	1.0	null
organism form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.864734
GSE139455_2_v_3_stat3_human	RummaGEO Gene Perturbation Signatures	1.0	null
496100323_FWM_possible Alzheimer's disease_TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.29356
blastula	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.03478
USF2	JASPAR Predicted Transcription Factor Targets	1.0	null
PMC10773028-40364_2023_552_MOESM1_ESM.xlsx-Variants_sheet-TFT_TBXT	Rummagene Transcription Factor Associations 2026	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-CC-A3M9-01A-11R-A213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC7592539-12885_2020_7456_MOESM4_ESM.xlsx-Sup_TableS3_LMS_del_genes_conf-19q13_43_TP63	Rummagene Transcription Factor Associations 2026	1.0	null
GSE193993_0_v_6_sstr2_human	RummaGEO Gene Perturbation Signatures	1.0	null
women	GeneRIF Biological Term Annotations	1.0	null
KARPAS-422	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.62963
meningoencephalitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.235616
SW 403	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.3211
Uterine Carcinosarcoma_UCS_TCGA-N7-A4Y0-01A-12R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Pituitary gland tumor cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.105
NKX2-8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.943
caudal subdivision of medial nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	2.80564
HAND2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.6054
major	GeneRIF Biological Term Annotations	1.0	null
term	GeneRIF Biological Term Annotations	1.0	null
LNCAPCLONEFGC	CCLE Cell Line Gene CNV Profiles	-1.0	-1.84865
YMB-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.75014
MITOMYCIN	DGIdb Drug Targets 2026	1.0	0.560127
vagina	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.133052
inferior occipital gyrus, right, inferior bank of gyrus	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.44241
FOS_MCF 10A_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
connective tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.085567
PMC8569982-41065_2021_205_MOESM1_ESM.xlsx-mono_THP1_a2b_tpm1-gene_GLI2	Rummagene Transcription Factor Associations 2026	1.0	null
NCI-H1650	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.903571
scale	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.344079
salivary gland	GTEx Tissue Gene Expression Profiles	-1.0	-1.00661
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-C5-A7CH-01A-11R-A33Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE223893_11_v_10_setd2_human	RummaGEO Gene Perturbation Signatures	1.0	null
Uterine wall	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.151
Ovary epithelial cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.043
C32TG	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.853626
central nervous system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Kidney cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.001
systemic mycosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.835607
euchromatin	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.245323
absent	GeneRIF Biological Term Annotations	1.0	null
pituitary	GTEx Tissue Gene Expression Profiles	1.0	1.18051
prostasome	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.548517
anterior orbital gyrus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-2.60722
Down syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.19
precentral gyrus, right, bank of the precentral sulcus	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.913484
Activin A complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.39
central medullary reticular group, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.876729
frontal pole, right, inferior aspect	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-2.03999
Embryonic structure	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
placenta	HPA Tissue Gene Expression Profiles	1.0	2.24804
tuberculosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.106647
Hemocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.82
cancer	GAD High Level Gene-Disease Associations	1.0	0.293278
KMS-12-PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.15908
internal female genital organ	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	1.53602
Adrenocortical carcinoma_ACC_TCGA-OR-A5LB-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hindbrain	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.93577
represent	GeneRIF Biological Term Annotations	1.0	null
NCI-H716	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.931285
TEAD-YAP complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.375
GSE195503_1_v_2_progesterone_human	RummaGEO Drug Perturbation Signatures	1.0	null
HUPT3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.67834
planum temporale, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.12155
COLO-818	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.880844
GSE138841_0_v_1_trim6_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Prostate adenocarcinoma_PRAD_TCGA-YL-A8HK-01A-11R-A36G-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Familial male-limited precocious puberty	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.073
DB	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.940585
NFIC_ECC-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Activin AB complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.121
PMC10773028-40364_2023_552_MOESM2_ESM.xlsx-Variants_sheet-TFT_TBXT	Rummagene Transcription Factor Associations 2026	1.0	null
ulcerative stomatitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.908965
THERAPEUTIC CORTICOSTEROID	DGIdb Drug Targets 2026	1.0	0.245056
GOSSYPOL ACETIC ACID	DGIdb Drug Targets 2026	1.0	11.7627
Prostate adenocarcinoma_PRAD_TCGA-EJ-A7NK-01A-12R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Hermaphroditism	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.386
COV362	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.88232
Adenohypophysis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.463
angular gyrus, right, inferior bank of gyrus	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.915637
urinary bladder cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.167343
Female reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.846
frontal operculum, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.978733
EHF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.9001
Hypogonadism	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.117
extracellular region	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.03577
POLR2A_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
supraoptic nucleus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.08912
GSE193402_0_v_3_imatinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
MZ in posterior parahippocampal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.40733
useroriented	GeneRIF Biological Term Annotations	1.0	null
morula	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.190716
Amniocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.957
Acute Myeloid Leukemia_LAML_TCGA-AB-2977-03B-01T-0760-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
nih3t3	GeneRIF Biological Term Annotations	1.0	null
Benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.287
rostral subdivision of paraventricular nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.38223
CP in caudal hippocampus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.29951
cellular_component	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.812111
gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.23539
HNF4G	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.2585
breast cancer	GAD Gene-Disease Associations	1.0	null
Malignant ovarian surface epithelial-stromal neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.103
prostate carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.09479
Bladder Urothelial Carcinoma_BLCA_TCGA-FD-A3B5-01A-11R-A20F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Hydatidiform Mole	DisGeNET Gene-Disease Associations	1.0	null
GSE118548_1_v_3_trametinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE202434,GSE202438_9_v_14_talazoparib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
BAZ2A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.73337
prostate cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.069179
Down Syndrome	DisGeNET Gene-Disease Associations	1.0	null
translation initiation complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.21646
down syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.227297
NCI-H2170	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.70166
HCC193	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.17756
upregulation	GeneRIF Biological Term Annotations	1.0	null
Adrenocortical carcinoma_ACC_TCGA-OR-A5KU-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
internal female genital organ	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
ZNF274	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.105
Mesothelioma_MESO_TCGA-NQ-A57I-01A-11R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
layer IIIu of area 35r	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.02181
Congestive Heart Failure	DisGeNET Gene-Disease Associations	1.0	null
frontal pole, left, medial aspect	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.6005
carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.318635
Gastric adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.198
cell type benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.722077
Chromosomal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.047
Lung adenocarcinoma_LUAD_TCGA-50-5044-01A-21R-1858-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE182179_5_v_3_kdsr_human	RummaGEO Gene Perturbation Signatures	1.0	null
Disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.989
GSE235066_7_v_2_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
THOC2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.11415
pyelitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.174881
N1-S1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.986
olfactory bulb	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.15968
HT-29	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.939416
Bladder Urothelial Carcinoma_BLCA_TCGA-DK-A6AW-01A-11R-A30C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cellular_component	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
loss	GeneRIF Biological Term Annotations	1.0	null
PMC9124206-41419_2022_4940_MOESM8_ESM.xlsx-DEG_PACA-CA-ID_PTF1A	Rummagene Transcription Factor Associations 2026	1.0	null
offsprings	GeneRIF Biological Term Annotations	1.0	null
paraventricular nuclei, left of thalamus, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	2.1382
RT4	CCLE Cell Line Gene CNV Profiles	1.0	1.38061
GSE202434,GSE202438_4_v_14_talazoparib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Cervical cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.277
adrenal gland cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.426109
squamous cell carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.114714
hypoglossal nucleus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.32574
neuroblastoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.280364
fastigial nucleus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.827055
Whole body	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
SP in midinferior temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.64389
AGS	CCLE Cell Line Gene CNV Profiles	1.0	1.75176
betahcg	GeneRIF Biological Term Annotations	1.0	null
12631704-table1	GeneSigDB Published Gene Signatures	1.0	null
Early Pregnancy	DisGeNET Gene-Phenotype Associations	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-G3-A5SJ-01A-11R-A27V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
rectum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.28887
MZ in primary visual cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.18009
PMC8582123-13073_2021_996_MOESM3_ESM.xlsx-AIRE-HIT_AIRE	Rummagene Transcription Factor Associations 2026	1.0	null
TSC1-TSC2 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.514
MZ in rostral entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.81867
Pituitary gland tumor cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.2
kidney	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.244545
JEKO1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.59927
COLO-704	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07717
Malignant Testicular Germ Cell Tumor	DisGeNET Gene-Disease Associations	1.0	null
cuneus, right, peristriate	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.0592
Gestational trophoblastic neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.806
PMC11257892-Table_1.xlsx-S2-Supplementary_Table_S2_All_results_of_the_preliminary_MR_analysis_NR3C2	Rummagene Transcription Factor Associations 2026	1.0	null
Breast disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.258
villous trophoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.604904
Miscarriage	DisGeNET Gene-Disease Associations	1.0	null
blood platelet disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.107754
internal male genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.464174
Ovum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.723
neuroepithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.170555
vascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.046825
OV90	CCLE Cell Line Gene CNV Profiles	1.0	1.43719
muscular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.069428
Placental membrane	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.205
fallopian tube	GTEx Tissue Gene Expression Profiles	-1.0	-1.00661
somatic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.318407
Giant cell tumor cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.641
primary culture	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.422673
alzheimer's disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.270464
PMC10011543-41419_2023_5707_MOESM4_ESM.xlsx-genes_with_unique_SNP-F5-Pneo-r__CIC-1n_h-r_CIC	Rummagene Transcription Factor Associations 2026	1.0	null
neurosecretory vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.364331
peaked	GeneRIF Biological Term Annotations	1.0	null
finding	GeneRIF Biological Term Annotations	1.0	null
Extravillous cytotrophoblast cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.303
inner CP in primary visual cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.07318
Sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.343
arcuate nucleus of medulla, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.21783
snps	GeneRIF Biological Term Annotations	1.0	null
apud cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.445268
Polycystic Ovary Syndrome	CTD Gene-Disease Associations	1.0	2.88009
HCC4006	CCLE Cell Line Gene CNV Profiles	-1.0	-1.35447
H3K4me1_A549_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
Labial palp	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.275
DIDEOXYADENOSINE	DGIdb Drug Targets 2026	1.0	2.35253
Synovial Cyst	DisGeNET Gene-Disease Associations	1.0	null
frontal pole, right, superior aspect	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.926696
Extravillous trophoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.21
medioventral part of putamen	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.64537
928 MEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.56284
embryonic structure	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.83993
Internal female genital organ	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
urinary bladder cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.169154
enteroendocrine cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.463013
MEK INHIBITOR PD-98059	DGIdb Drug Targets 2026	1.0	0.534667
determine	GeneRIF Biological Term Annotations	1.0	null
Leydig cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.421
gh1	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.788
controls	GeneRIF Biological Term Annotations	1.0	null
ELF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.6105
endocrine gland cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.065031
TP63-22573176-HFKS-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
NCI-H1355	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.15828
promoter	GeneRIF Biological Term Annotations	1.0	null
determinant	GeneRIF Biological Term Annotations	1.0	null
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Primitive endoderm	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.271
stomatitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.163729
inner SZ in dorsomedial extrastriate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.990509
Pancreatic adenocarcinoma_PAAD_TCGA-XN-A8T3-01A-11R-A36G-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCIH1339	CCLE Cell Line Gene CNV Profiles	1.0	1.5547
susceptibility	GeneRIF Biological Term Annotations	1.0	null
hormone	GeneRIF Biological Term Annotations	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-K7-AAU7-01A-11R-A38B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-R8-A6MK-01A-11R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
intracellular organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.863068
ets2	GeneRIF Biological Term Annotations	1.0	null
cos-7 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.631931
496100453_HIP_possible Alzheimer's disease_no TBI_88_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.05581
GSE140651,GSE140653_2_v_7_med1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Megasporangium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.837
Placental cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.932
Morula	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.195
PMC7591516-41467_2020_18955_MOESM6_ESM.xlsx-Overlap_DEGs_MSC_Diff_GCTB-Gene_MSC	Rummagene Transcription Factor Associations 2026	1.0	null
PMC3226433-1756-8935-4-20-S1.XLS-Table_S4_Myc_KD_gene_exp_change-Genes_up-regulated_in_Myc_KD_hESC_AR	Rummagene Transcription Factor Associations 2026	1.0	null
CAOV3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33295
lingual gyrus, right, striate	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.09115
NCI-H1930	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09163
mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.494528
MZ in posteror frontal cortex (motor cortex)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.11392
intracellular membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.896257
RXRA::VDR	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.0
vestibular nuclei, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.47945
adenohypophysis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.385143
Cell type benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.23
Stomach disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.538
RECOMBINANT TUMOR NECROSIS FACTOR FAMILY PROTEIN	DGIdb Drug Targets 2026	1.0	1.17627
NCI-H1299	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.17756
chronic meningitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.665563
Macronodular Adrenal Hyperplasia	DisGeNET Gene-Phenotype Associations	1.0	null
sites	GeneRIF Biological Term Annotations	1.0	null
Squamous cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.035
Choriocarcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.169
NCI-H1975	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06811
adrenal gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.3554
syncytiotrophoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.81774
Cortical endoplasmic reticulum	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.639
sporadic breast cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.197099
LCLC-97TM1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10489
Y-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.416
NCI-H441	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.93018
Rectum adenocarcinoma_READ_TCGA-AH-6544-01A-11R-1830-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Gastrointestinal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.367
Prostate adenocarcinoma_PRAD_TCGA-G9-6379-01A-11R-A31N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE134375_0_v_7_stat3_human	RummaGEO Gene Perturbation Signatures	1.0	null
enhancer	GeneRIF Biological Term Annotations	1.0	null
disease by infectious agent	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.301615
Prostate adenocarcinoma_PRAD_TCGA-VN-A88I-01A-11R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
stratum pyramidale of rostral CA2	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-2.289
HS 746T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04207
FOSL2_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-2F-A9KW-01A-11R-A38B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
bone cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.416576
head	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.728975
Placenta accreta	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.367
cytoplasmic part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.959268
Reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.794
MECO complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.776
Cushing Syndrome	DisGeNET Gene-Disease Associations	1.0	null
STAT1	JASPAR Predicted Transcription Factor Targets	1.0	null
TP63	ChEA Transcription Factor Targets	1.0	null
Puberty, Delayed	HuGE Navigator Gene-Phenotype Associations	1.0	null
molecules	GeneRIF Biological Term Annotations	1.0	null
risk	GeneRIF Biological Term Annotations	1.0	null
disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.901978
Pituitary gland cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.098
intracellular organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.231672
urogenital system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.930621
inferior olivary complex, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.43995
fibroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.117091
embryonic cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.388535
male reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.050407
Slit diaphragm	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.714
MCF10DCIS.COM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07717
concentrations	GeneRIF Biological Term Annotations	1.0	null
trophoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.13457
submerged culture	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.413532
Mixed Germ Cell Tumor	DisGeNET Gene-Disease Associations	1.0	null
endoplasmic reticulum	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.279245
gastrointestinal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.047028
Inhibin A complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.589
NCIH2286	CCLE Cell Line Gene CNV Profiles	-1.0	-1.5634
organelle membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.226686
three	GeneRIF Biological Term Annotations	1.0	null
HOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.4704
membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.368536
SLU7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.10788
methylation	GeneRIF Biological Term Annotations	1.0	null
alimentary canal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.534251
REST_Panc1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MOLP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.940585
sarcoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.518465
Prostate adenocarcinoma_PRAD_TCGA-KC-A7F3-01A-21R-A33R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GCIY	COSMIC Cell Line Gene CNV Profiles	1.0	3.12177
wnt5b	GeneRIF Biological Term Annotations	1.0	null
NR3C2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.8398
dorsal motor nucleus of the vagus (vagal nucleus)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.0185
other source	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.563238
SNU878	CCLE Cell Line Gene CNV Profiles	1.0	1.9372
GSE174701_1_v_2_maml3_human	RummaGEO Gene Perturbation Signatures	-1.0	null
secretory granule membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.739614
Brain Lower Grade Glioma_LGG_TCGA-R8-A6ML-01A-11R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
excretory gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.478534
Testicular cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.174
NIH:OVCAR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.81749
polymorphisms	GeneRIF Biological Term Annotations	1.0	null
embryo	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.338177
GSE202434,GSE202438_9_v_5_talazoparib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-CJ-4642-01B-01R-1305-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
neuroectodermal tumor cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.195893
CTCF	ENCODE Transcription Factor Targets	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-UY-A8OC-01A-11R-A36F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
pontine nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.917615
outer SZ in caudal midinferior temporal cortex (area TF)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.47168
raphe nuclei of medulla	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.19297
ovarian	GeneRIF Biological Term Annotations	1.0	null
GSE114284_2_v_3_irf1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Ovarian carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.104
Lung squamous cell carcinoma_LUSC_TCGA-77-8130-01A-11R-2247-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
early	GeneRIF Biological Term Annotations	1.0	null
subarachnoid space	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.351485
germcell	GeneRIF Biological Term Annotations	1.0	null
silencing	GeneRIF Biological Term Annotations	1.0	null
did	GeneRIF Biological Term Annotations	1.0	null
kidney cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.091784
lateral subdivision of BNST	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.32585
neuroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.063458