association	dataset	threshold value	standardized value
CCNYL1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.61697
BHLHA15	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.8879
inner CP in rostral cingulate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.89839
NCIH650	CCLE Cell Line Gene CNV Profiles	1.0	2.24616
POU6F2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.18139
lymphoma cell	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
GSE193351_1_v_0_ruxolitinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
5-8F cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.691
ZFP92	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.23625
PK-59	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07436
GSE162892_4_v_5_isox_human	RummaGEO Drug Perturbation Signatures	-1.0	null
intracellular organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.654741
Acute Myeloid Leukemia_LAML_TCGA-AB-2832-03A-01T-0736-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
KDM5A	ENCODE Transcription Factor Targets	1.0	null
PARD6A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.18556
PPHLN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.81853
dorsal subdivision of VLC	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.872015
external female genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.650966
Type IV pilus	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.756
NKAIN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.47414
VZ in septal region	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.859796
GSE193351_1_v_9_ruxolitinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
DAOY	CCLE Cell Line Gene CNV Profiles	-1.0	-1.85166
angiomyoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.853631
ATAD2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.38839
thoracic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.138572
hsa-miR-1206	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
CBLC	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.72465
GSE224294_3_v_2_ngly1_human	RummaGEO Gene Perturbation Signatures	1.0	null
sebaceous adenoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.733406
endocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.600479
PMC12048643-44318_2025_409_MOESM3_ESM.xlsx-regulonTargets-GATA3_GATA3	Rummagene Transcription Factor Associations 2026	1.0	null
overnutrition	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.134076
posterior (caudal) superior temporal cortex (area 22c)_4 mos_M_12296	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.993424
OCIMY5	DepMap CRISPR Gene Dependency	1.0	6.03105
dorsolateral prefrontal cortex_13 pcw_M_12820	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.00015
cell part	GO Cellular Component Annotations 2015	1.0	null
GSE193351_1_v_3_ruxolitinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
CDK5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.96296
skin	GTEx Tissue Gene Expression Profiles	1.0	2.18987
intracellular organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.662072
Organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.117
muscle benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.453716
YMB-1-E	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23342
NKX2-6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.12769
CDX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.0504
IALM	CCLE Cell Line Gene CNV Profiles	1.0	2.19052
GSE231829_0_v_1_stat3_human	RummaGEO Gene Perturbation Signatures	1.0	null
GATA4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.0431
METTL14	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.84721
MEF2A_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cerebellum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.539396
vertebrate muscular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.683511
podoplanin	GeneRIF Biological Term Annotations	1.0	null
TWF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.50391
LPAR3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.17642
SUM52PE	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.617611
layer III of caudal entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.16538
CRIM1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.53797
kidney cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.067652
LMX1A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.2989
basal cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.35594
SEC23B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.34472
ZDHHC24	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.43499
MMS22L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.25164
mineral metabolism disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.120356
lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.057015
ZNF226	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.35431
periaqueductal gray substance, dorsolateral portion	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.949187
KMS28BM	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34214
CD177	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.56563
Hematopoietic system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
sweat gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.64256
KASUMI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.43964
ichthyosis vulgaris	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.401945
ZNF677	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.46827
hippocampus (hippocampal formation)_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.04708
CDKN2A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.61137
FOXL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.7829
MSC	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.18108
muscle tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.067316
CNOT3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.25986
cerebellar cortex_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.65426
H4C2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.58293
muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.408592
Liver hepatocellular carcinoma_LIHC_TCGA-DD-A39Z-11A-21R-A213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HOXA10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.2671
localized scleroderma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.278654
BICR 31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2822
CHCHD3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.77288
NUGC-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.43879
histiocytoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.336876
NOTO	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.1163
BHLHE23	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.35739
Acute Myeloid Leukemia_LAML_TCGA-AB-2849-03A-01T-0734-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CHMP4B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.85829
LS1034	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.50299
muscular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.75495
core of nucleus accumbens	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.898135
reproductive organ benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.498467
Cul4B-RING E3 ubiquitin ligase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.241
motor neuron atrophy	GWASdb SNP-Phenotype Associations	1.0	0.467264
LMTK3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.63914
HOXB9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.7397
arrector pili muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.57945
SUM1315MO2	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.574435
single-organism process	GO Biological Process Annotations 2015	1.0	null
PABPC5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.71883
TUBA1A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.40287
SEKI	DepMap CRISPR Gene Dependency	1.0	3.51988
Hair follicle neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.267
SKLU1	CCLE Cell Line Gene CNV Profiles	1.0	1.53197
helper	GeneRIF Biological Term Annotations	1.0	null
HCC461	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10716
NDUFA1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.40347
UBE2D1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.72376
CTCF_fibroblast of skin of abdomen_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NSMCE4A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.28146
increasing	GeneRIF Biological Term Annotations	1.0	null
PSN1	DepMap CRISPR Gene Dependency	1.0	2.05124
male reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.070832
HPAC	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.982808
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-A6JE-01A-11R-A31N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
supports	GeneRIF Biological Term Annotations	1.0	null
anchoring junction	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.093348
skeletal system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.473092
FAM8A1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.87953
fibrous histiocytoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.313552
neuron projection	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.070936
squamous cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.766351
H3K27ac_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CN-5363-01A-01R-1436-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NOA1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.25159
musculoskeletal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.059468
stele	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.137879
B3GALT6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.87603
HMGB1P1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.3059
KP4	CCLE Cell Line Gene CNV Profiles	1.0	1.45449
cheek	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.17757
antheridium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.587629
gonadal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.294053
SCLC-21H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20587
molecular_function	GO Molecular Function Annotations 2015	1.0	null
eccrine sweat gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.41537
MEF2B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.016
uterine endometrium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.927621
Squamous cell neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.009
hypocotyl	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.229299
GSE176144_0_v_1_zfc3h1_human	RummaGEO Gene Perturbation Signatures	1.0	null
DMWD	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.50404
GSE193351_4_v_3_ruxolitinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
RPL41	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.36019
ZNF417	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.94846
cell junction	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.060248
RNASET2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.35287
binding	GO Molecular Function Annotations 2015	1.0	null
sensory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.040187
PA-TU-8902	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.911283
HLA-C	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.97213
female reproductive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.341126
GSE175787_4_v_2_rhoc_human	RummaGEO Gene Perturbation Signatures	1.0	null
MAGED1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.22136
hematologic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.044993
inverted follicular keratosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.62381
OACM5-1	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.36169
fungal infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.09854
METTL13	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.44323
abnormality of nervous system physiology	GWASdb SNP-Phenotype Associations	1.0	0.050341
PMC6275272-FEB4-8-1977-s006.docx-1-Supplementary_Table_S2_Upregulated_genes_under_MYC_knockdown_in_AMU-ML2_cells_1_MYC	Rummagene Transcription Factor Associations 2026	1.0	null
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-JW-A5VL-01A-11R-A28H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CCNYL2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.34759
TSC1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.27181
GSE219195_0_v_5_rbm12_human	RummaGEO Gene Perturbation Signatures	1.0	null
vestibular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.095971
NCIH196	CCLE Cell Line Gene CNV Profiles	-1.0	-2.48168
unlike	GeneRIF Biological Term Annotations	1.0	null
NCI-H1355	COSMIC Cell Line Gene Mutation Profiles	1.0	null
orbital frontal cortex_8 yrs_M_12841	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.903539
E2F3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.9941
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-5187-01A-01R-1426-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
keratin filament	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.684207
amyotrophic lateral sclerosis	GWASdb SNP-Phenotype Associations	1.0	0.467264
Liver hepatocellular carcinoma_LIHC_TCGA-DD-A73C-01A-12R-A33J-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
G111	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.58487
phagocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.073001
CACO-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.876039
CTCF_fibroblast of dermis_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
pigmented basal cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.10594
hsa-miR-3605-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.4186
BMP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.44319
H3K9ac_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
CRIP3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.19662
CLDN4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.27842
striatum_16 pcw_M_12879	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.14125
microtubule cytoskeleton	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.255834
smooth muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.838672
PRDX1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.04936
hsa-miR-595	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
TMEM115	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.61758
YRDC	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.33436
RAB6C	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.3418
anterior (rostral) cingulate (medial prefrontal) cortex_15 yrs_M_12299	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.73304
DMS 53	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10716
Lung squamous cell carcinoma_LUSC_TCGA-NC-A5HQ-01A-11R-A26W-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
disease of metabolism	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.047687
SRXN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.17285
SPATA13	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.39348
ventrolateral prefrontal cortex_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.00932
intermediate filament	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.929833
knee	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.223419
pharynx	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.079029
gonorrhea	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.276158
496100598_PCx_possible Alzheimer's disease_no TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.61555
connective tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.056311
aggregation	GeneRIF Biological Term Annotations	1.0	null
ZNF761	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.22225
Kidney renal clear cell carcinoma_KIRC_TCGA-CZ-4863-11A-01R-1503-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE152441,GSE152442_6_v_4_folic acid_human	RummaGEO Drug Perturbation Signatures	-1.0	null
eyelid	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.666809
non-membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.675499
ML-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07705
SPIB	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.47442
used	GeneRIF Biological Term Annotations	1.0	null
Uterine Carcinosarcoma_UCS_TCGA-N8-A4PM-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
parasitic infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.076224
sweat gland cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.9769
gingival disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.136257
subcutaneous tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.725685
cellular_component	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.761797
peripheral t-cell lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.134745
juvenile	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.53267
FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.0962
PMC10709143-41556_2023_1271_MOESM9_ESM.xls-Up_in_PAX7-Target_name_PAX7	Rummagene Transcription Factor Associations 2026	1.0	null
medioventral part of putamen	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.824662
SK-N-FI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.891549
TMEM185A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.60615
Autoimmune disease of musculoskeletal system	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.07
acquired metabolic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.073689
Liver hepatocellular carcinoma_LIHC_TCGA-CC-A8HT-01A-11R-A36F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
FEV	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.11824
cerebellar cortex_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.83809
IZ in granular insular cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.09955
type	GeneRIF Biological Term Annotations	1.0	null
FOXO6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.0728
cyst	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.95093
ENTPD4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.85437
Congenital chylothorax	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.073
cowden disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.187415
microparticles	GeneRIF Biological Term Annotations	1.0	null
hsa-miR-4459	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
erythroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.181438
response to stress	GO Biological Process Annotations 2015	1.0	null
organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.648721
all	GWASdb SNP-Phenotype Associations	1.0	0.029655
Lung squamous cell carcinoma_LUSC_TCGA-77-8139-01A-11R-2247-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.3505
cell part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
Skin Cutaneous Melanoma_SKCM_TCGA-EB-A4OZ-01A-12R-A266-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCI-H920	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.63732
8305C	DepMap CRISPR Gene Dependency	1.0	2.37739
YMB1	CCLE Cell Line Gene CNV Profiles	1.0	1.52827
KOPN-8	COSMIC Cell Line Gene Mutation Profiles	1.0	null
striatum_12 pcw_F_13060	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.981302
SMIM12	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.11463
RPL35A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.65455
CP in caudal subicular cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.64297
natural killer cell mediated cytotoxicity	GO Biological Process Annotations 2025	1.0	null
caudal (posterior) extramural migratory stream	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.3442
nipple	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.702308
syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.066449
SNU-387	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.995822
scalp	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	2.5223
EZH2	ENCODE Transcription Factor Targets	1.0	null
RTN4R	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.55911
POLR2M	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.90446
carney complex	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.195183
ZNF558	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	98.1954
MZ in lateral temporal-occipital cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.915275
motor neuron disease	GWASdb SNP-Disease Associations	1.0	0.548003
BRCC3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.79091
upper (rostral) rhombic lip	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.21943
bone	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.221989
nerve	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.302838
HCC70	DepMap CRISPR Gene Dependency	1.0	2.41359
hair follicle bulge	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.77857
Acute Myeloid Leukemia_LAML_TCGA-AB-2911-03A-01T-0734-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HOXD12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.1356
SNAPC4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.60247
MM1S	DepMap CRISPR Gene Dependency	1.0	2.0591
Liver hepatocellular carcinoma_LIHC_TCGA-DD-A1EB-01A-11R-A131-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SH3BP4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.26681
UMUC9	DepMap CRISPR Gene Dependency	1.0	2.76752
primary motor cortex (area M1, area 4)_4 mos_M_12296	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.866015
PMC7592539-12885_2020_7456_MOESM4_ESM.xlsx-Sup_TableS3_LMS_del_genes_conf-12q13_11_TP63	Rummagene Transcription Factor Associations 2026	1.0	null
H2AFZ_fibroblast of dermis_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
stem	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.405935
Psoriasis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.235
CHST1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.62905
inferior colliculus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.59773
SAMD14	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.22437
iris	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.508242
hippocampus (hippocampal formation)_13 pcw_F_12834	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.850363
NCI-H1435	COSMIC Cell Line Gene Mutation Profiles	1.0	null
FOXN2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.89058
dermoid cyst	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.341639
integumentary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.20396
MHHCALL4	CCLE Cell Line Gene CNV Profiles	-1.0	-1.48351
MMP17	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.1942
posterior (caudal) superior temporal cortex (area 22c)_10 mos_M_12977	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.42677
NCIH1703	CCLE Cell Line Gene CNV Profiles	1.0	1.63898
skin cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.62023
Acute Myeloid Leukemia_LAML_TCGA-AB-2842-03A-01T-0734-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
capable	GeneRIF Biological Term Annotations	1.0	null
ORMDL3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.99664
hair disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.32803
GSE227698_5_v_3_g0s2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
NONO	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.79081
ZBED4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.86544
IZ in posterior parahippocampal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	2.07894
cell periphery	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
EHMT2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.88258
DHRS7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.60279
GOLGA4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.72574
ERF::HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.9913
NCI-H650	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.21384
scapula	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.371994
KLM1	CCLE Cell Line Gene CNV Profiles	1.0	1.50446
ELL2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.33284
erythrocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.187265
RBPJ	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.73445
CFP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.25066
Lung squamous cell carcinoma_LUSC_TCGA-21-A5DI-01A-31R-A26W-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
membrane part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
H3K4me3_keratinocyte_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
DPM2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.65991
fascicle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.891374
Molluscum contagiosum	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.144
ZNF415	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.93936
GSE70935_3_v_5_cyfip1_human	RummaGEO Gene Perturbation Signatures	1.0	null
H3K27me3_skeletal muscle myoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
FOSL1::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.522
VZ in subgenual cingulate neocortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.38552
itam	GeneRIF Biological Term Annotations	1.0	null
PMC8709578-elife-69843-supp2.xlsx-HSF1_KO_2_Ctr-Gene_Name_HSF1	Rummagene Transcription Factor Associations 2026	1.0	null
cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.03662
NAA16	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.73448
Lichen nitidus	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.24
CEP170	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.99639
musculoskeletal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.590558
COR-L88	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23239
antibodydependent	GeneRIF Biological Term Annotations	1.0	null
female reproductive organ benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.580439
GATA2	ENCODE Transcription Factor Targets	1.0	null
glycogen granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.174635
viscus	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Pilus tip	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.899
orbital frontal cortex_12 pcw_F_13060	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.04486
STAT1::STAT2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.0823
SK-MEL-31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1657
NTERA-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.72351
KCNK15	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.97217
FOSL2::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.6674
POLR2A	ENCODE Transcription Factor Targets	1.0	null
amygdaloid complex_15 yrs_M_12299	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.02635
SNU-1040	COSMIC Cell Line Gene Mutation Profiles	1.0	null
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.24602
striatum_3 yrs_F_12836	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-2.71093
PATU8902	CCLE Cell Line Gene CNV Profiles	1.0	1.62203
H3K4me3_fibroblast of skin of abdomen_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
GSE150072,GSE169209_6_v_9_qser1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
lymphoid tissue	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
membrane	LOCATE Predicted Protein Localization Annotations	1.0	null
Brain - Cerebellar Hemisphere	GTEx Tissue Gene Expression Profiles 2023	1.0	5.76504
CAMA1	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.678828
NCIH2073	CCLE Cell Line Gene CNV Profiles	-1.0	-2.13083
BTBD6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.70752
GSE193351_4_v_9_ruxolitinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
BATF_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Myeloid cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.096
FOS_MCF 10A_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
DMS-53	COSMIC Cell Line Gene CNV Profiles	1.0	2.10992
TIMM44	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.20869
cell	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
pilar	GeneRIF Biological Term Annotations	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-2Y-A9H3-01A-11R-A38B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
DCTD	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.89637
Lymphoma cell	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
NDUFS8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.41643
metencephalon	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.535438
hsa-miR-1207-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
plexiform neurofibroma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.31464
dermis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.44682
TEPSIN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.89934
hair follicle neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.77993
DNASE1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.93324
Primary immunodeficiency disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.172
dysgerminoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.291539
Bladder Urothelial Carcinoma_BLCA_TCGA-KQ-A41R-01A-21R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
FOSB::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.0703
skin benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.61039
Disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.233
ZNF354A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	96.9909
PODXL2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.22438
tail of caudate	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.930439
GSE201309_5_v_0_matrine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
epidermal cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.6945
SFXN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.99654
eyelid carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.179239
nervous system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.050442
neurofibroma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.392629
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.860955
RAX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8284
mononuclear phagocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.080354
BCL9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.11524
skin sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.03367
myoepithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.320956
NUDCD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.88885
TMEM121B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.46877
HOXC6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.1613
inflammatory cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.348889
MYH14	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.44772
SIRT5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.73302
NCI-H196	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.79141
496100616_FWM_no dementia_TBI_84_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	6.18441
amygdaloid complex_8 yrs_M_12841	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.95566
FOXH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.9361
GSE224311_3_v_1_chaetocin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
SORD	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.86667
MST1R	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.13356
TXNDC17	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.01372
NCIH929	CCLE Cell Line Gene CNV Profiles	-1.0	-1.52769
anterior (rostral) cingulate (medial prefrontal) cortex_21 pcw_M_12886	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.1065
T84	COSMIC Cell Line Gene CNV Profiles	1.0	2.10992
SG in rostral perirhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.827015
LTBP4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.28221
RH30	CCLE Cell Line Gene CNV Profiles	1.0	1.36565
Liver hepatocellular carcinoma_LIHC_TCGA-DD-A3A6-01A-11R-A22L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
intracellular non-membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.675499
Lung squamous cell carcinoma_LUSC_TCGA-39-5034-01A-01R-1443-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
shoot	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.415434
rheumatic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.117435
innate immune response	GO Biological Process Annotations 2015	1.0	null
KCI-MOH1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1082
monocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.081599
membrane	GO Cellular Component Annotations 2015	1.0	null
PMC10709143-41556_2023_1271_MOESM10_ESM.xls-Up_hPSC_PAX7-Target_name_PAX7	Rummagene Transcription Factor Associations 2026	1.0	null
ELMO3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.15141
SNU-407	COSMIC Cell Line Gene Mutation Profiles	1.0	null
sezary's disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.267977
external male genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.598067
blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.355198
PCNA-p21 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.095
Head and Neck squamous cell carcinoma_HNSC_TCGA-CN-5374-01A-01R-1436-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
uterus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.74834
CTCF_HepG2_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SELENOW	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.80613
posterior (caudal) superior temporal cortex (area 22c)_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.837486
A-427	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.50299
HCC38	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.934485
CEBPG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.9078
ZKSCAN1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.087
GSE94849_7_v_0_pinometostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
ZBTB26	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.6398
NCI-H2171	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0738
GSE247084,GSE247087_0_v_1_cdyl_human	RummaGEO Gene Perturbation Signatures	1.0	null
seedling	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.129243
CORL88	CCLE Cell Line Gene CNV Profiles	1.0	1.389
P3H4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.79585
MEWO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.36714
DUXA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.9114
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-VS-A8EH-01A-11R-A36F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Adrenocortical carcinoma_ACC_TCGA-OR-A5LM-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.7105
cell projection	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.368536
RNK-16 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.314
nucleus	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.185777
EZH2_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
adult	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.294223
cytoskeletal part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.793771
skin squamous cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.570718
ZNF783	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.46874
Rectum adenocarcinoma_READ_TCGA-AG-3591-01A-01R-1736-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Spondyloarthropathy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.222
CTCF_skin fibroblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PMC10361959-41419_2023_5985_MOESM1_ESM.pdf-1319-FOXJ2_FOXJ2	Rummagene Transcription Factor Associations 2026	1.0	null
scabies	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.407545
PMC7371429-elife-53600-supp2.xlsx-annotated_MEIS1_in_B13ko-M1-Gene_Name_MEIS1	Rummagene Transcription Factor Associations 2026	1.0	null
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.41491
MORCPR	DepMap CRISPR Gene Dependency	1.0	2.7308
ETV5::DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.4832
melanocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.808134
inferolateral temporal cortex (area TEv, area 20)_13 pcw_F_12834	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.01179
BICR31	CCLE Cell Line Gene CNV Profiles	-1.0	-1.49796
brooke-spiegler syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.65288
defense response	GO Biological Process Annotations 2015	1.0	null
abnormal neuron morphology	GWASdb SNP-Phenotype Associations	1.0	0.467264
follicular mucinosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.831508
MDAMB361	DepMap CRISPR Gene Dependency	1.0	2.94094
GRIK5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.50535
PIP5K1C	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.68956
lymph node	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.346298
GATA2	JASPAR Predicted Transcription Factor Targets	1.0	null
hidradenoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.32454
DNMT3B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.80589
CFPAC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.90052
mammary myoepithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.670878
SOX10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.26238
OLFML2A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.90726
autosomal dominant disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.424014
iris smooth muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.508242
symplast	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.838269
CPHXL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.57806
NUB1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.7888
SP in caudal midinferior temporal cortex (area TF)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.23828
exocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.10402
stratum oriens of caudal CA1	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.05534
telogen effluvium	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.829869
elastic fiber	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.222083
manner	GeneRIF Biological Term Annotations	1.0	null
SEPTIN3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.9302
GSE48812_3_v_5_sulforaphane_human	RummaGEO Drug Perturbation Signatures	1.0	null
Rectum adenocarcinoma_READ_TCGA-EI-6883-01A-31R-1928-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ZFP90	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.5192
adenosquamous carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.550134
organism form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.17003
LEFTY1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.61054
outer SZ in midlateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.76817
BTBD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.7711
STAT1-20625510-HELA-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
posterior (caudal) superior temporal cortex (area 22c)_13 pcw_M_12888	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.36614
embryo	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057414
ZNF528	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.8003
fibrosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.134154
GSE231745_1_v_0_venetoclax_human	RummaGEO Drug Perturbation Signatures	1.0	null
MSRB1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.16029
lateral subdivision of BNST	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.52815
RAB11B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.40808
phenotypic abnormality	GWASdb SNP-Phenotype Associations	1.0	0.02969
BRD4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.55349
OVKATE	CCLE Cell Line Gene CNV Profiles	-1.0	-1.35755
cellulitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.635921
integumentary system benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.61039
FOXP4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.5951
central nervous system disease	GWASdb SNP-Disease Associations	1.0	0.084473
GSE70935_2_v_0_cyfip1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
NMB	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.95767
groin	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.72322
TMED10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.77397
CTCF_GM12864_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
C1orf50	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.07171
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-C5-A2LZ-01A-11R-A213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
autosomal genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.406798
hemangioma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.396725
H2AFZ_keratinocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
identical protein binding	GO Molecular Function Annotations 2015	1.0	null
GSE152441,GSE152442_6_v_5_folic acid_human	RummaGEO Drug Perturbation Signatures	1.0	null
renal carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.102671
U-698-M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.891549
benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.3952
hsa-miR-4302	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
LRRC59	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.5471
spleen	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
TMEM94	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.05046
H3K4me3_fibroblast of dermis_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
IZ in posteror frontal cortex (motor cortex)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.14527
dermatofibrosarcoma protuberans	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.499614
leiomyosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.894589
CTCF-20526341-ESCS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
HDGFL1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.39132
Lung squamous cell carcinoma_LUSC_TCGA-22-5492-01A-01R-1635-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HNF1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.0628
STAT1	ChEA Transcription Factor Targets	1.0	null
THO complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.02
ACTR2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.32837
PMC12518476-10067_2025_7574_MOESM9_ESM.xlsx-Sheet2-RNAseq_DEGs_of_KD_AR	Rummagene Transcription Factor Associations 2026	1.0	null
PMC12616242-can-24-3452_supplementary_table_s2_suppst2.xlsx-Up_bins-Up_bins_gaining_H3K27me3_in_hpMSC-EWSR1_FLI1_FLI1	Rummagene Transcription Factor Associations 2026	1.0	null
uterine fibroid	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.617486
TACSTD2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.77875
Hair shaft	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.672
TRAF2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.22333
LS123	CCLE Cell Line Gene CNV Profiles	1.0	1.40955
protein dimerization activity	GO Molecular Function Annotations 2015	1.0	null
germ cell cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.085716
immune system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.043675
germ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.584022
NUDHL1	CCLE Cell Line Gene CNV Profiles	1.0	1.38114
ZNF410	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.2531
eccrine acrospiroma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.4465
cytoskeleton	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.760887
hidradenitis suppurativa	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.795821
subparafascicular nucleus of thalamus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.54692
hsa-miR-3616-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
anterior (rostral) cingulate (medial prefrontal) cortex_23 yrs_M_12300	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.840885
hippocampus (hippocampal formation)_23 yrs_M_12300	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.14125
Papillary renal cell carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.71
IZ in medial temporal-occipital cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.64555
cell part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.750904
PSMC3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.10003
BGN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.8952
leaf lamina	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.126699
GSE193351_4_v_0_ruxolitinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Kidney renal papillary cell carcinoma_KIRP_TCGA-GL-7966-01A-11R-2204-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
breast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.483206
basal cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.20645
regulated	GeneRIF Biological Term Annotations	1.0	null
Acute Myeloid Leukemia_LAML_TCGA-AB-3005-03A-01T-0736-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
leiomyoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.73914
periodontal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.111285
DIFI	DepMap CRISPR Gene Dependency	1.0	4.44281
ZNF24	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	50.2686
COPS4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.15546
nkp65expressing	GeneRIF Biological Term Annotations	1.0	null
WDR82	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.56877
eccrine sweat gland neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.49921
mediodorsal nucleus of thalamus_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.919211
GSE140965_1_v_4_mybpc3_human	RummaGEO Gene Perturbation Signatures	1.0	null
hsa-miR-3686	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
retroperitoneal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.766351
cytokines	GeneRIF Biological Term Annotations	1.0	null
RIMOC1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.30658
ZNF665	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.58943
Skin Cutaneous Melanoma_SKCM_TCGA-EB-A3XC-01A-11R-A239-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ARMT1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.66715
HOXC4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.5436
disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.20613
hsa-miR-2392	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
TGW	COSMIC Cell Line Gene Mutation Profiles	1.0	null
inner CP in subgenual (subcallosal) cingulate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.84318
SACS	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.94904
SUDHL6	CCLE Cell Line Gene CNV Profiles	-1.0	-1.76197
NCI-H2373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.24416
TMEM221	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.37568
kimura disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.553239
nape	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.40328
GTF2I	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.04458
H3K9me3_HeLa-S3_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-EB-A299-01A-21R-A18U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CDC73	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.44935
induces	GeneRIF Biological Term Annotations	1.0	null
GSE150895,GSE150896_0_v_1_enzalutamide_human	RummaGEO Drug Perturbation Signatures	1.0	null
ZNF529	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.3817
GSE152441,GSE152442_7_v_2_folic acid_human	RummaGEO Drug Perturbation Signatures	1.0	null
CL-40	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.95238
POLD4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.35854
Proteasome storage granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.599
Head and Neck squamous cell carcinoma_HNSC_TCGA-CR-7385-01A-11R-2016-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
inferolateral temporal cortex (area TEv, area 20)_13 yrs_F_12831	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.311
Liver hepatocellular carcinoma_LIHC_TCGA-DD-A4NE-01A-11R-A27V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SNU81	DepMap CRISPR Gene Dependency	1.0	8.3067
HNF4G	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.2986
Skin Cutaneous Melanoma_SKCM_TCGA-FS-A4FC-06A-11R-A24X-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Immune system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Perturb_12227_KD_TARBP2_SRP197041	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.40468
UQCC1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.49338
Liver hepatocellular carcinoma_LIHC_TCGA-DD-A114-11A-12R-A131-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
FOXP3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.4861
NFATC4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.362
colonic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.102912
ATP2B1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.50634
SLVL	DepMap CRISPR Gene Dependency	1.0	4.00412
Liver hepatocellular carcinoma_LIHC_TCGA-EP-A12J-11A-11R-A131-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
FOXK2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.0411
GATA1::TAL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.998
Kidney renal clear cell carcinoma_KIRC_TCGA-A3-3346-01A-01R-1766-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MACROH2A2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.47862
ZNF562	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.44809
E2F1	JASPAR Predicted Transcription Factor Targets	1.0	null
hidradenitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.759824
JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.4562
cellular_component	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
sex differentiation disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.431894
DCTN4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.77771
desmosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.280716
H3K9me3_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
PMC9437808-mmc3.xlsx-IPA_Upstream_regulators-IPA_Upstream_regulator_analysis_Up_regulated_genes_following_LPS_treatment_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
atrophy/degeneration affecting the central nervous system	GWASdb SNP-Phenotype Associations	1.0	0.467264
CLK3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.1645
PARP8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.61415
GSE195559_8_v_1_notch1_human	RummaGEO Gene Perturbation Signatures	1.0	null
FOXH1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.37438
MAPK7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.4306
Corneocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.75
TRIM32	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.23718
SUPT6H	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.68747
CWC15	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.61678
GATA6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.082
nervous system disease	GWASdb SNP-Disease Associations	1.0	0.046665
muscle cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.648138
CLDN6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.18135
disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.750864
FOXL1	JASPAR Predicted Transcription Factor Targets	1.0	null
alpha-beta T cell receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.675
496100423_PCx_no dementia_TBI_95-99_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.75408
CENPC	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.15437
Kidney Chromophobe_KICH_TCGA-KL-8323-01A-21R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
connective tissue cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.173057
kidney	GTEx Tissue Gene Expression Profiles	-1.0	-1.01057
KIAA0319L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.87175
COX20	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.64307
lateral hypothalamic area, anterior part	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.824217
cutis laxa	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.324094
FLCN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.52863
POGK	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.17246
villus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.190165
embryonic structure	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.294581
HSF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.7983
KCTD19	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.10601
OUMS-23	COSMIC Cell Line Gene Mutation Profiles	1.0	null
FOSL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8468
GTF2A1L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.25113
psoriasis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.143873
extracellular matrix	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.269701
stimulating	GeneRIF Biological Term Annotations	1.0	null
GSE195559_0_v_9_notch1_human	RummaGEO Gene Perturbation Signatures	1.0	null
endocrine system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.072557
Histiocytic lymphoma cell	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
NCC021	COSMIC Cell Line Gene Mutation Profiles	1.0	null
musculoskeletal system benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.410909
H3K79me2_fibroblast of dermis_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
retroperitoneal leiomyosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.05387
primary somatosensory cortex (area S1, areas 3,1,2)_4 mos_M_12296	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.886103
MDAMB436	CCLE Cell Line Gene CNV Profiles	1.0	1.38804
metastasisreview	GeneRIF Biological Term Annotations	1.0	null
inner ear	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.083475
plant reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.151642
C-type lectin-like	InterPro Predicted Protein Domain Annotations	1.0	null
GSE184892_7_v_1_trehalose_human	RummaGEO Drug Perturbation Signatures	1.0	null
lymphoid tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.344449
SNU16	CCLE Cell Line Gene CNV Profiles	-1.0	-1.70483
PCDHB5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.55891
muir-torre syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.737865
PPP2R3C	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.88784
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-FA-A7Q1-01A-11R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
leaf epidermis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.1449
IZ in lateral temporal-occipital cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.75516
pre-malignant neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.091453
gingival overgrowth	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.167452
sweat gland neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.432
ZNF217_MCF-7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MAP2K2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.16679
leukocyte mediated cytotoxicity	GO Biological Process Annotations 2015	1.0	null
PMC9996951-40659_2023_417_MOESM3_ESM.xlsx-Osteo_vs_MSC_Array2_hypo_er_txt-Upstream_NAME_MSC	Rummagene Transcription Factor Associations 2026	1.0	null
ARMC8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.77317
lower epidermis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.654618
GSE140997_10_v_1_nsun6_human	RummaGEO Gene Perturbation Signatures	-1.0	null
NCI-H146	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.83581
SLC35F2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.6209
A172	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10576
CAPAN1	DepMap CRISPR Gene Dependency	1.0	3.39874
PCDHB3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.01543
orbital frontal cortex_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.27139
SLC36A4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.46821
neurohypophysis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.04005
GSE162892_4_v_0_isox_human	RummaGEO Drug Perturbation Signatures	1.0	null
MDA-MB-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17249
Head and Neck squamous cell carcinoma_HNSC_TCGA-CN-A6V1-01A-12R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
vitiligo	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.257005
SNU-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14238
GSE181003_3_v_2_selinexor_human	RummaGEO Drug Perturbation Signatures	-1.0	null
phloem	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.186359
syringoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.03746
monitor	GeneRIF Biological Term Annotations	1.0	null
peripheral nervous system neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.11453
cell	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.750904
PLCXD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.25405
SPART	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.84878
OPLAH	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.65888
viral infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.053596
BARHL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.1003
UBE2R2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.36596
breast disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.140471
NOMO1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.35034
Head and Neck squamous cell carcinoma_HNSC_TCGA-WA-A7GZ-01A-11R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RPS20	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.51368
cholesteatoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.163523
Bladder Urothelial Carcinoma_BLCA_TCGA-GU-A763-01A-11R-A32O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE162892_3_v_1_isox_human	RummaGEO Drug Perturbation Signatures	-1.0	null
inner CP in midlateral extrastriate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.26521
496100600_FWM_possible Alzheimer's disease_no TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.42974
GATA3	ENCODE Transcription Factor Targets	1.0	null
molluscum contagiosum	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.816745
PPP1R16B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.00698
RPRD2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.93819
seborrheic keratosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.17292
SG in midlateral extrastriate cortex (area 19)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.872015
PHOX2B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.7385
LMSU	CCLE Cell Line Gene CNV Profiles	1.0	2.18786
PSME3IP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.97219
PA-TU-8988S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.934485
RTL5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.49487
IZ in posterosuperior (dorsal) parietal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.03838
pilomatrixoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.77993
MSLN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.63673
CHML	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.37986
ADAMTS15	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.6806
LY2	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.00713
procambium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.137879
HOP-62	COSMIC Cell Line Gene Mutation Profiles	1.0	null
NCI-H358	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00397
Liver hepatocellular carcinoma_LIHC_TCGA-CC-A9FS-01A-11R-A37K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
stratum granulosum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.214388
langerhans cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.33744
female pudendum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.658678
GATA6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.4188
metaphloem	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.181505
hypervitaminosis a	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.496939
HSDL2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.34264
mediodorsal nucleus of thalamus_4 mos_M_12296	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.915275
HCC1599	CCLE Cell Line Gene CNV Profiles	-1.0	-1.5751
STAT1-20625510-HELA-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
natural killer cell mediated immunity	GO Biological Process Annotations 2023	1.0	null
HCC1419	DepMap CRISPR Gene Dependency	1.0	3.4008
cellular_component	GO Cellular Component Annotations 2015	1.0	null
hsa-miR-150	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.13535
trunk	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.663149
plasma membrane	GO Cellular Component Annotations 2015	1.0	null
Cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.147
DCXR	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.48923
APMAP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.248
NCOR-22424771-293T-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
scrotum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.913507
hyperandrogenism	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.226607
protozoan form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.223177
CP in temporal polar cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-2.30823
H3K27ac_fibroblast of dermis_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
adult stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.106441
SLX1A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.80359
496100633_TCx_no dementia_TBI_84_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.69552
THP-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.54802
PMC6400843-Table_5.xls-C_FOXM1_Correlated_genes-Symbol_FOXM1	Rummagene Transcription Factor Associations 2026	1.0	null
EBC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.04532
SUPV3L1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.24693
platelet	GeneRIF Biological Term Annotations	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-P3-A6T0-01A-12R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Pancreatic adenocarcinoma_PAAD_TCGA-HZ-7289-01A-11R-2156-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
integral component of membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
female reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.721577
vascular bundle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.12879
ZNF184	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.21935
SCAMP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.18779
hidrocystoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.793771
protein homodimerization activity	GO Molecular Function Annotations 2025	1.0	null
immune system process	GO Biological Process Annotations 2015	1.0	null
TPM1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.62728
mediodorsal nucleus of thalamus_16 pcw_M_12837	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.2313
TCF21	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.5346
folliculitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.36741
GATA3-22897851-JUKARTE6-1-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Clear cell hidradenoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.13
PUSL1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.40921
H3K4me1_Fetal Lung	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
amygdaloid complex_16 pcw_M_12837	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.841728
excretory gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.733089
tumorinduced	GeneRIF Biological Term Annotations	1.0	null
limb	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.61578
blood cancer cell	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
depression	GWASdb SNP-Phenotype Associations	1.0	0.345642
rectum	HPA Tissue Protein Expression Profiles	1.0	0.793834
chr12_9873436_C_T_b38	GTEx eQTL 2025	1.0	1.52034
C-type lectin	InterPro Predicted Protein Domain Annotations	1.0	null
Disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.323
proteolysis	GeneRIF Biological Term Annotations	1.0	null
BID	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.18601
parasitic ectoparasitic infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.445052
vascular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.289582
TIGD3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.15069
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4986-01A-01R-1334-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Viscus	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
HCC60	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.75022
YMB-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23342
cell-cell junction	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.067842
calcinosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.496939
ZZZ3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.78927
outer SZ in ventrolateral prefrontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.858765
NPIPB13	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.81265
TFAP2C	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.477
dorsolateral prefrontal cortex_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.0151
Acanthoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.201
SK-OV-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.36714
GATA2_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cd161	GeneRIF Biological Term Annotations	1.0	null
Pilomatrixoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.27
HOXC10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.7362
VZ in midlateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-2.18866
PMC8444148-NIHMS1529754-supplement-1529754_Tab_S2.xlsx-downregulated_in_ATF4OE-RNA-seq_of_C3_ATF4_OE_and_C3_neurons_ATF4	Rummagene Transcription Factor Associations 2026	1.0	null
MOLP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.4339
PSME1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.86704
marrow cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.095397
ZNF766	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.43293
TP53	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.37498
keratosis follicularis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.77207
SW579	CCLE Cell Line Gene CNV Profiles	1.0	2.75444
malignant acrospiroma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.70998
GSE217776,GSE217829_2_v_6_sgf29_human	RummaGEO Gene Perturbation Signatures	-1.0	null
SYCP3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.50365
ALDH18A1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.70625
496100486_PCx_no dementia_no TBI_86_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.22174
CLIC1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.67258
Bladder Urothelial Carcinoma_BLCA_TCGA-MV-A51V-01A-11R-A26T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ELK1::HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.375
CHTOP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.24802
GSE152441,GSE152442_1_v_2_folic acid_human	RummaGEO Drug Perturbation Signatures	1.0	null
HDLM2	CCLE Cell Line Gene CNV Profiles	1.0	1.58619
foot	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.094062
Bladder Urothelial Carcinoma_BLCA_TCGA-FD-A3SS-01A-12R-A22U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ventral medial nucleus of thalamus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.11478
antigenspecific	GeneRIF Biological Term Annotations	1.0	null
mediodorsal nucleus of thalamus_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.72959
SLC35A4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.08087
oculocutaneous albinism	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.163938
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-7414-01A-11R-2081-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
UBFD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.79006
GSE156708_1_v_0_fbxo11_human	RummaGEO Gene Perturbation Signatures	-1.0	null
DDAH1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.34827
Toe	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.971
IA-LM	COSMIC Cell Line Gene CNV Profiles	1.0	2.10992
Hypopharynx	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.673
Intestine	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
CCDC78	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.64034
cardiovascular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.230382
Lymphoid tissue	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
PL4	COSMIC Cell Line Gene CNV Profiles	1.0	2.10992
STX16	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.0023
hiatus hernia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.208579
COLO824	DepMap CRISPR Gene Dependency	1.0	4.89272
LGR4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.36066
chronic gonococcal salpingitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.988535
VGF	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.67957
adenoid	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.446422
SAP18	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.6787
viscus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.050936
adrenal gland	GTEx Tissue Gene Expression Profiles	-1.0	-1.01057
pilar sheath acanthoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.8839
hair follicle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	2.13896
CTCF_GM12873_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-TQ-A7RH-01A-12R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC5263239-mmc2.xls-ML2_-_MLL-AF6-Spreading_targets_gene_names_38_unique_KMT2A	Rummagene Transcription Factor Associations 2026	1.0	null
lymphoid follicle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.233446
HOXD11	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.9719
NCI-H727	COSMIC Cell Line Gene Mutation Profiles	1.0	null
MYCL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.95495
abnormality of nervous system morphology	GWASdb SNP-Phenotype Associations	1.0	0.063387
PL4	DepMap CRISPR Gene Dependency	1.0	7.37839
SNU1076	CCLE Cell Line Gene CNV Profiles	1.0	1.35508
IER5L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.73072
IKZF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.23779
MESP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.01087
NCI-H810	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.3471
SLC30A1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.85873
infiltrative basal cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.937044
PMC8724844-bt-30-1-98-supple2.xlsx-GO_BP-TFAP4_TFAP4	Rummagene Transcription Factor Associations 2026	1.0	null
VZ in ventromedial extrastriate cortex (VP)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.18862
Lung adenocarcinoma_LUAD_TCGA-86-A4D0-01A-11R-A24H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PAX9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.17143
Liver hepatocellular carcinoma_LIHC_TCGA-ES-A2HT-11A-11R-A180-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
IZ in superolateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.892817
Type I pilus	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.609
fasciitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.176215
blood	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.65905
CYP2A13	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.7242
merocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.41537
posterior (caudal) superior temporal cortex (area 22c)_8 yrs_M_12841	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.972962
Prostate adenocarcinoma_PRAD_TCGA-EJ-7788-01A-11R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
integumentary system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.62023
SOX18	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.3914
squamous epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.659085
KPNA2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.94249
T47D	CCLE Cell Line Gene CNV Profiles	-1.0	-3.18948
MFSD5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.34197
layer VI of caudal entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.43896
PLPBP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.89867
Liver hepatocellular carcinoma_LIHC_TCGA-G3-AAV7-01A-11R-A38B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CAKI2	DepMap CRISPR Gene Dependency	1.0	8.8927
GADD45G	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.57051
epidermal appendage tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.45441
fungus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.219083
NR3C2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.24884
sebaceous gland neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.662784
secretion	GeneRIF Biological Term Annotations	1.0	null
lateral intermediate part of entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.63908
cell property	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.623446
SLC25A17	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.12559
FOXF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.2896
ATG9B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.60037
NTERA2CLD1	DepMap CRISPR Gene Dependency	1.0	6.44841
small intestine	HPA Tissue Protein Expression Profiles	1.0	1.50179
inner ear vestibulum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.186632
CGTHW1	CCLE Cell Line Gene CNV Profiles	1.0	2.75069
CTCF_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
abnormal emotion/affect behavior	GWASdb SNP-Phenotype Associations	1.0	0.248998
NFKBIL1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.8751
GSE264621_1_v_6_secretin_human	RummaGEO Drug Perturbation Signatures	1.0	null
KP4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.71689
GSE201309_4_v_2_matrine_human	RummaGEO Drug Perturbation Signatures	1.0	null
ZR751	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.619557
Cul4-RING E3 ubiquitin ligase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.315
ETV2::DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.2984
regio orbitalis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.749579
SYDE1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.18305
arteriovenous malformation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.284013
FIZ1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.941
nerve compression syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.158434
FBXL18	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.84608
FOXC1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.0911
S100A6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.74397
Central conducting lymphatic anomaly	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.01
olfactory bulb	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	2.14912
APOE	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.82522
root nodule	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.30613
lipoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.535409
seborrheic dermatitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.630813
GSE193351_1_v_2_ruxolitinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
PMC8571097-41588_2021_941_MOESM3_ESM.xlsx-Supplementary_Table_2-Supplementary_Table_2_List_of_KMT2A_fusion_oncoprotein_target_genes_in_each_sample_KMT2A	Rummagene Transcription Factor Associations 2026	1.0	null
RAF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.17238
GSE125862_2_v_1_dexamethasone_human	RummaGEO Drug Perturbation Signatures	-1.0	null
OE21	COSMIC Cell Line Gene Mutation Profiles	1.0	null
hypersensitivity reaction type ii disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.061942
FDXACB1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.32837
PRSS53	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.94571
periaqueductal gray substance, ventral portion	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.05874
LIN54	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.47384
H3K4me1_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
hypotrichosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.20656
PMC6400843-Table_5.xls-C_FOXM1_Correlated_genes-Ensembl_ID_FOXM1	Rummagene Transcription Factor Associations 2026	1.0	null
acanthoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.68906
SU-DHL-5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13639
CBARP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.84944
RBPJ	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.7344
H2AFZ_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
biological_process	GO Biological Process Annotations 2015	1.0	null
POU5F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.509
LAD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.90139
plasma membrane	LOCATE Predicted Protein Localization Annotations	1.0	null
NCIH146	CCLE Cell Line Gene CNV Profiles	1.0	1.48737
Kidney Chromophobe_KICH_TCGA-KO-8403-11A-01R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
gynecomastia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.391141
GSE195559_6_v_1_notch1_human	RummaGEO Gene Perturbation Signatures	1.0	null
hematopoietic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.266069
lateral orbital frontal cortex (area 12/47)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-2.15401
Kidney renal clear cell carcinoma_KIRC_TCGA-CZ-4865-11A-01R-1503-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
LTA4H	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.0555
HOXB2::ELK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.5408
ZBTB33	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.66627
TADA2A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.68617
VZ in midlateral extrastriate cortex (area 19)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.21378
MDST8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.89049
FARAGE	DepMap CRISPR Gene Dependency	1.0	2.40813
dermis tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.18755
fibroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.221061
SGTA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.36451
NEURL1B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.66833
EPB41L4B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.97741
GSE218060_2_v_4_decitabine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
MDA-MB-157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.78523
MBNL3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.91583
Head and Neck squamous cell carcinoma_HNSC_TCGA-KU-A66T-01A-11R-A30B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
EZH2_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-Q1-A6DW-01A-11R-A32P-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
TRMU	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.45181
HT-144	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-DR-A0ZM-01A-12R-A10U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
keratinocytes	GeneRIF Biological Term Annotations	1.0	null
NOTCH2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.191
Brain - Hippocampus	GTEx Tissue Gene Expression Profiles 2023	1.0	4.22404
496100391_FWM_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	8.04073
iris sphincter muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.576415
EEF2K	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.69715
NCI-H1373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.90052
GH2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.61544
hematopoietic system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-DU-A7TB-01A-11R-A33Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cell type benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.23126
HCC2185	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.0532
PACSIN3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.76371
NUGC2	CCLE Cell Line Gene CNV Profiles	1.0	1.9318
Adrenocortical carcinoma_ACC_TCGA-OR-A5LD-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
vascular tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.120998
CTCF_GM06990_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PNPLA6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.48006
sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.099034
hair shaft	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.56135
trophozoite	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.413151
myeloid progenitor cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.094306
skin disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.06816
GSE140997_4_v_5_nsun6_human	RummaGEO Gene Perturbation Signatures	1.0	null
Integumentary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.207
primary auditory cortex (core)_8 yrs_M_12841	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.912605
COLO 699	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.828452
ZNF729	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.93301
laterodorsal part of putamen	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.12837
hsa-miR-4778-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
stratum basale	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.23807
RAB6A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.93003
posterior (caudal) superior temporal cortex (area 22c)_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.23093
PMC10061014-Table7.XLSX-C_vs_L-Table_S7a_Predicted_upstream_regulators_of_genes_showing_cd-ASE_depending_on_LPS_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
DMAC2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.10289
neurodegenerative disease	GWASdb SNP-Disease Associations	1.0	0.242385
CTCF_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PMC9437808-mmc5.xlsx-Upstream_regulators-IPA_Upstream_regulator_analysis_genes_that_were_downregulated_in_the_cf-mRNA_of_AZD_treated_group_at_2-hour_post_LPS_time_point_were_used_as_inputs_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
mania	GWASdb SNP-Phenotype Associations	1.0	0.427593
PMC4686057-pone.0145107.s001.xlsx-PAA-CAA-Unnamed_0_TSHZ1	Rummagene Transcription Factor Associations 2026	1.0	null
mononuclear cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.094485
IFT25	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.16903
Viral infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.008
PL-21	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.30494
HCC1599	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.09534
ZNF582	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.16346
MEWO	CCLE Cell Line Gene CNV Profiles	-1.0	-1.749
sebaceous gland disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.390769
regio parietalis capitis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.606514
SKM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.17841
UQCC3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.77524
HCC515	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.889713
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
H3K27me3_Caco-2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RPA4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.75851
organ system benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.16563
nodular hidradenoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.05807
PMC8709578-elife-69843-supp2.xlsx-MIX_E2_1h-Nearest_Ensembl_MIXL1	Rummagene Transcription Factor Associations 2026	1.0	null
DUT	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.52515
NFKBIZ	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.55685
cuneate nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.828562
disease	GWASdb SNP-Disease Associations	1.0	0.026361
spermatozoid	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.637594
ZNF580	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.47541
dorsolateral prefrontal cortex_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.00932
HCN2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.92884
Lung adenocarcinoma_LUAD_TCGA-05-4389-01A-01R-1206-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC7371429-elife-53600-supp2.xlsx-annotated_MEIS1_in_B13ko-M1-Nearest_Ensembl_MEIS1	Rummagene Transcription Factor Associations 2026	1.0	null
lateral subdivision of area 9	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.95583
kacldependent	GeneRIF Biological Term Annotations	1.0	null
mesenchyme	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.369373
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
MLST8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.88516
alimentary canal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052614
Keratohyalin granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.935
Head and Neck squamous cell carcinoma_HNSC_TCGA-P3-A6T6-01A-11R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-ER-A19A-06A-21R-A18U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hsa-miR-3647-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
utricle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.303919
hematopoietic system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.459145
Perturb_8649_KO_TBX5_SRP287180	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	11.3347
DKC1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.59476
whole plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.05413
whole body	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
nerve sheath	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.360409
SP in midlateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.913074
NCI-H2198	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.934485
PMC7481169-277_2020_4194_MOESM9_ESM.xlsx-RUNX1_R174L-RUNX1_R174L_mutant_RUNX1	Rummagene Transcription Factor Associations 2026	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-WY-A858-01A-11R-A36H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
calcium metabolism disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.157765
salpingitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.471089
GSE118077_7_v_2_sprr5_human	RummaGEO Gene Perturbation Signatures	1.0	null
PBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8015
Brain Lower Grade Glioma_LGG_TCGA-DU-5854-01A-11R-1708-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE201309_4_v_6_matrine_human	RummaGEO Drug Perturbation Signatures	1.0	null
PIGA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.78843
CDK18	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.39105
127399	DepMap CRISPR Gene Dependency	1.0	2.00759
ADAMTS8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.02277
CNOT2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.06211
HUH-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.27853
GSE208350_0_v_1_fgfr1_human	RummaGEO Gene Perturbation Signatures	1.0	null
OLIG2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.5011
teratoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.112861
UM-UC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.92367
proteinaceous extracellular matrix	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.24713
Spleen	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
layer III of rostral entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.839046
plant embryo	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.22797
THUMPD2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.46398
middle ear disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.066861
chr12_9943487_G_C_b38	GTEx eQTL 2025	1.0	2.1383
retroparafascicular area of thalamus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.19312
protein homodimerization activity	GO Molecular Function Annotations 2023	1.0	null
P63-26484246-CHIP-SEQ-KERATINOCYTES-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
NCI-H1623	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04492
posteroventral (inferior) parietal cortex_16 pcw_M_12287	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.63209
ECE2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.66715
MPP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.80937
express	GeneRIF Biological Term Annotations	1.0	null
GSE200099_3_v_1_honokiol_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-85-A4JB-01A-51R-A262-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
mood disorder	GWASdb SNP-Disease Associations	1.0	0.268304
ELMOD2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.50092
MDAMB436	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.36945
D423MG	DepMap CRISPR Gene Dependency	1.0	2.3524
GSE195514_0_v_1_stk25_human	RummaGEO Gene Perturbation Signatures	-1.0	null
ZFX_KD_GSE43021_130_human_NOMO1	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
striatum_37 yrs_M_12303	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.61573
ABCD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.34957
TXNDC15	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.56768
HUH1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.60629
H1-1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.1114
U266B1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.43964
GRB7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.63242
photosensitive trichothiodystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.65288
brain stem	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.492963
Scleral staphyloma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.241
ARID3B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.11085
Skin Cutaneous Melanoma_SKCM_TCGA-EB-A3XD-01A-22R-A239-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
proliferation	GeneRIF Biological Term Annotations	1.0	null
HCC38	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.55416
Lung adenocarcinoma_LUAD_TCGA-55-5899-01A-11R-1628-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
primary auditory cortex (core)_15 yrs_M_12299	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.16514
GSE140965_2_v_4_mybpc3_human	RummaGEO Gene Perturbation Signatures	1.0	null
parasolitary nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.08715
HCC1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.55139
Liver hepatocellular carcinoma_LIHC_TCGA-DD-A4ND-01A-11R-A266-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PAX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.171
HCC1954	CCLE Cell Line Gene CNV Profiles	-1.0	-1.9269
JHH-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.995822
PALM	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.15885
496100497_FWM_no dementia_TBI_95-99_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.81404
autosomal recessive disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.080051
PMC9288051-13046_2022_2428_MOESM12_ESM.xlsx-HL-60-genes_bound_by_LYL1_at_its_promoter_regions_in_AML_cell_line_HL-60_LYL1	Rummagene Transcription Factor Associations 2026	1.0	null
genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.348246
NCI-H929	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.40014
spondylolysis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.685091
496100475_TCx_no dementia_no TBI_86_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.76507
Autoimmune disease of skin and connective tissue	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.173
JHUEM1	DepMap CRISPR Gene Dependency	1.0	2.38791
AZIN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.0888
PXMP4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.14397
COR-L47	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.32976
DUX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.0404
NPRL2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.40521
MRFAP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.94586
SF3B1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.66844
FOXC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.6117
leiomyomatosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.867549
FASLG	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.10088
Pheochromocytoma and Paraganglioma_PCPG_TCGA-WB-A81G-01A-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.176
KP1N	DepMap CRISPR Gene Dependency	1.0	2.15897
TM9SF4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.8779
bone disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.046825
TOR4A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.69423
ZNF534	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.77624
HSF2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.38398
SU-DHL-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.892504
nucleus of diagonal band	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.0076
CTCF_GM12872_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
THP1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.00846
amygdaloid complex_3 yrs_F_12836	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.56088
intracellular membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.267139
KDM5A_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
sebaceous gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.20867
Gastrointestinal tract	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
Acute Myeloid Leukemia_LAML_TCGA-AB-2956-03A-01T-0740-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
TCEAL6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.03628
19658189-TableS4	GeneSigDB Published Gene Signatures	1.0	null
area postrema	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.899614
CD164L2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.04168
P53-21459846-SAOS-2-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
GSE116930,GSE116935_1_v_6_hes7_human	RummaGEO Gene Perturbation Signatures	-1.0	null
POU1F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.5839
tinea manuum	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.22995
CDH3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.755
FOXK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.8381
H3K4me2_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-A6JY-01A-11R-A31N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
TCTA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.85352
antiapoptotic	GeneRIF Biological Term Annotations	1.0	null
GSE152441,GSE152442_6_v_2_folic acid_human	RummaGEO Drug Perturbation Signatures	1.0	null
primary somatosensory cortex (area S1, areas 3,1,2)_30 yrs_F_12290	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.83923
histiocytic lymphoma cell	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
SLAIN2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.69929
C8orf82	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.35718
sense organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.24676
OV7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.24416
cutaneous fibrous histiocytoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.07152
spindle cell lipoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.541217
H3K4me1_fibroblast of dermis_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
EBC1	CCLE Cell Line Gene CNV Profiles	1.0	1.43835
DMS53	CCLE Cell Line Gene CNV Profiles	1.0	1.59461
cell part	LOCATE Predicted Protein Localization Annotations	1.0	null
pilus	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.07765
SH10TC	CCLE Cell Line Gene CNV Profiles	1.0	1.81406
SCLC21H	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36419
SU-DHL-6	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.43964
MMAB	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.23527
intrinsic component of membrane	GO Cellular Component Annotations 2015	1.0	null
ventrolateral prefrontal cortex_15 yrs_M_12299	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.59759
hindbrain	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.515317
primary visual cortex (striate cortex, area V1/17)_13 pcw_F_12834	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.927379
collagen disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.091622
BARX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.8209
TM7SF2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.76846
STX3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.20183
plateletderived	GeneRIF Biological Term Annotations	1.0	null
BRMS1L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.71298
GLB1L3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.00366
Viscus	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
PMAIP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.90098
ciliary body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.376119
PMC9288051-13046_2022_2428_MOESM5_ESM.xlsx-Super_enhancers_in_T-ALL1-CLOSEST_GENE_KMT2A	Rummagene Transcription Factor Associations 2026	1.0	null
GNPNAT1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.40489
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-6938-11A-01R-1915-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
polyneuropathy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.157765
EI24	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.66064
ARID5A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.77137
nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042428
Lung squamous cell carcinoma_LUSC_TCGA-66-2789-01A-01R-0980-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
blood vessel	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.274045
GCT	DepMap CRISPR Gene Dependency	1.0	4.52746
intermediate filament cytoskeleton	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.929363
Alimentary canal	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
ZNF431	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.41224
ventrolateral prefrontal cortex_3 yrs_F_12836	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-2.69397
LSM14A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.63862
macrophage	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.084403
hsa-miR-3689d	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
VPS26C	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.44212
PHOX2B-30127528-KELLY-HUMAN-BRAINNEUROBLASTOMA	ChEA Transcription Factor Targets 2022	1.0	null
TGFBRAP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.75663
DBF4B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.52203
LS-411N	COSMIC Cell Line Gene Mutation Profiles	1.0	null
intestinal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.058828
lynch syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.245221
MDAMB157	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.04253
GSE227698_5_v_0_g0s2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
gastrointestinal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.052884
PPIF	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.06839
CYB5A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.66717
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-4845-01A-01R-1277-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.42045
primary motor cortex (area M1, area 4)_12 pcw_F_12960	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.03984
IZ in inferolateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.27708
RHOXF2B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.10149
KLM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.911283
C1orf35	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.33945
BAT3 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.964
hippocampus (hippocampal formation)_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.04442
inner SZ in ventromedial extrastriate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.06826
smooth muscle tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.856087
H3K4me3_keratinocyte_hg19_3	ENCODE Histone Modification Site Profiles	1.0	null
Blood cancer cell	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.03956
chronic salpingitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.766759
skin pilomatrix carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.22085
sporozoan form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.32753
clear cell basal cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.901156
TMEM249	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.9946
leg	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.450271
layer IIIu of area 35r	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.23055
skin carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.34548
organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.804846
FLI1::DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.8777
monocyte-derived dendritic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.857
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-EA-A6QX-01A-12R-A33Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RSC1A1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.971
ZNF696	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.339
FOXJ1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.33465
hsa-miR-4485	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
erythroid cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.181438
choroid	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.293151
subcutis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.643669
morphological abnormality of the central nervous system	GWASdb SNP-Phenotype Associations	1.0	0.07068
bipolar disorder	GWASdb SNP-Disease Associations	1.0	0.500989
DROSHA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.90776
DSTN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.60181
melanoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.414276
T84	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21971
HOXB13	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.29954
implicated	GeneRIF Biological Term Annotations	1.0	null
leukocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05274
WDR20	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.11898
DGKQ	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.57589
PMC8709578-elife-69843-supp2.xlsx-HSF1_KO_2_Ctr-Nearest_Ensembl_HSF1	Rummagene Transcription Factor Associations 2026	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-43-6143-01A-11R-1820-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
integument	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.64006
DARS2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.59513
PATU8988T	DepMap CRISPR Gene Dependency	1.0	7.32027
ZNF217	ENCODE Transcription Factor Targets	1.0	null
kacl	GeneRIF Biological Term Annotations	1.0	null
outer plexiform zone in extrastriate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.32459
medial portion of STH	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.15373
GSE162892_4_v_2_isox_human	RummaGEO Drug Perturbation Signatures	-1.0	null
SKMEL19	DepMap CRISPR Gene Dependency	1.0	3.10332
COGN278	DepMap CRISPR Gene Dependency	1.0	2.00645
EPDR1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.09955
hsa-miR-496	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
bclxl	GeneRIF Biological Term Annotations	1.0	null
GSE223609,GSE223610_0_v_1_kdm6a_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE212330_1_v_0_azacitidine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Morpheaform basal cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.341
NOM1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.42354
MGMT	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.00767
PMC6987220-41467_2020_14312_MOESM5_ESM.xlsx-P53_Spheres-9_names_TP53	Rummagene Transcription Factor Associations 2026	1.0	null
CTCF_A549_hg19_7	ENCODE Transcription Factor Binding Site Profiles	1.0	null
anterior (rostral) cingulate (medial prefrontal) cortex_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.949788
PHLDB2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.47625
giant axon	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.285507
Liver hepatocellular carcinoma_LIHC_TCGA-G3-A3CH-01A-11R-A22L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
rostral (anterior) extramural migratory stream	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.07611
natural killer cell mediated immunity	GO Biological Process Annotations 2025	1.0	null
leiomyoma cutis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.62336
posterior (caudal) superior temporal cortex (area 22c)_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.857039
INPP5E	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.35159
female reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.11088
epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.10977
FOS_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MKNK1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.0734
GATA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.5843
NKRF	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.93395
response to stimulus	GO Biological Process Annotations 2015	1.0	null
HOP-62	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.15501
MDAMB157	CCLE Cell Line Gene CNV Profiles	-1.0	-1.56113
RASL11B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.06532
stratum lacunosum-moleculare of caudal CA1	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.07573
skin stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.253578
496100484_FWM_no dementia_no TBI_86_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	6.86783
TNFRSF18	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.14957
KMS-28BM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.17898
GJC3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.98627
trichorhinophalangeal syndrome type i	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.210925
Macrolide transmembrane transporter complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.746
TUBB6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.23973
CLRC complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.265
normoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.181438
midbrain reticular formation	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.867165
GSE152441,GSE152442_0_v_4_folic acid_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE227698_2_v_1_g0s2_human	RummaGEO Gene Perturbation Signatures	1.0	null
hair	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.30298
SEMG1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.05634
Kidney renal papillary cell carcinoma_KIRP_TCGA-P4-A5E8-01A-11R-A28H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
urinary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.043898
Sarcoma_SARC_TCGA-DX-A7EI-01A-11R-A33J-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
mammary gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.09657
internal female genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.56603
JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.2512
ZNF211	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.0063
Kidney renal papillary cell carcinoma_KIRP_TCGA-B9-4617-01A-01R-1193-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC8709578-elife-69843-supp2.xlsx-MIX_Ctr-Gene_Name_MIXL1	Rummagene Transcription Factor Associations 2026	1.0	null
DACH2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.10298
bone structure disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.135436
Head and Neck squamous cell carcinoma_HNSC_TCGA-UF-A7JT-01A-11R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RERF-LC-KJ	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.982808
CTCF_K562_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MED8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.54906
SG in ventrolateral prefrontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.24146
NDUFB4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.48778
TAF2-19829295-ESCS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
PMC9288051-13046_2022_2428_MOESM5_ESM.xlsx-Super_enhancers_in_T-ALL1-OVERLAP_GENES_KMT2A	Rummagene Transcription Factor Associations 2026	1.0	null
SIGLEC10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.65879
eccrine sweat gland cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	2.16132
lymphocyte mediated immunity	GO Biological Process Annotations 2015	1.0	null
hindlimb	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.490229
MAVER1	DepMap CRISPR Gene Dependency	1.0	3.02268
actinic keratosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.535022
HCC202	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.36343
immune system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.043158
C-type lectin fold	InterPro Predicted Protein Domain Annotations	1.0	null
JDP2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.4077
cd3	GeneRIF Biological Term Annotations	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4981-01A-01R-1334-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
deep layers of olfactory entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	3.34509
primary auditory cortex (core)_13 yrs_F_12831	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.36135
FOXP1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.0388
lymphoepithelioma-like carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.706351
SKMEL31	CCLE Cell Line Gene CNV Profiles	1.0	1.76084
BICR 78	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.890698
Liver hepatocellular carcinoma_LIHC_TCGA-RG-A7D4-01A-12R-A33R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HOXD10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.3449
CTCF	ENCODE Transcription Factor Targets	1.0	null
FOXO4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.8618
cytoplasm	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.301797
NO10	DepMap CRISPR Gene Dependency	1.0	4.62009
SNU1076	DepMap CRISPR Gene Dependency	1.0	4.36019
ZIC4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.77284
primary auditory cortex (core)_25 pcw_F_12948	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-2.01626
SZ in posterior parahippocampal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.12357
NCI-H1299	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.889713
inflamed seborrheic keratosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.27911
Head and Neck squamous cell carcinoma_HNSC_TCGA-CR-7368-01A-11R-2132-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
vesiculobullous skin disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.283297
Catalytic step 2 spliceosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.896
muscular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.065866
OVCA 432	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.982808
keratinocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.42993
NCIH1993	DepMap CRISPR Gene Dependency	1.0	4.22012
RPUSD3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.10643
FOXP2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.0052
protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.596855
bacterial infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.043601
PMC12126244-jci-135-184115-s239.xlsx-Table_3_Suppl_Fig_16-Genes_down-regulated_in_SOX9_low_tumors_744_genes_SOX9	Rummagene Transcription Factor Associations 2026	1.0	null
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-EA-A3HR-01A-11R-A213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Pheochromocytoma and Paraganglioma_PCPG_TCGA-WB-A820-01A-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
plant form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.631527
BATF_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
primary visual cortex (striate cortex, area V1/17)_3 yrs_F_12836	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.28562
urogenital system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.687592
cerebellar cortex_13 yrs_F_12831	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.04646
membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.267139
STAT3_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BCL2L13	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.17591
Autoimmune disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.175
HSF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.464
GSE152441,GSE152442_7_v_5_folic acid_human	RummaGEO Drug Perturbation Signatures	1.0	null
cytoplasmic part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.040562
GSE152441,GSE152442_1_v_5_folic acid_human	RummaGEO Drug Perturbation Signatures	1.0	null
orbital frontal cortex_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.93814
LMF2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.26779
cutaneous leiomyosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.08076
MKN-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.828452
TEAD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.4751
DNAJC13	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.20519
papillary renal cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.575383
TUBA1C	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.10137
infundibulum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.13014
goldenhar syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.610838
PGD	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.98568
NKX2-5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.0882
MSI1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.12571
interpositus (intermediate) nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.942174
posterior (caudal) superior temporal cortex (area 22c)_23 yrs_M_12300	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.46185
blast cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.087837
BACH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.5069
tooth disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.072829
natural killer cell mediated cytotoxicity	GO Biological Process Annotations 2015	1.0	null
ZC3H13	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.78506
Adrenocortical carcinoma_ACC_TCGA-PK-A5H8-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCI-H23	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.982808
stratum spinosum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.468048
receptors	GeneRIF Biological Term Annotations	1.0	null
fiber	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.22415
epidermolysis bullosa	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.293334
YD38	DepMap CRISPR Gene Dependency	1.0	5.93318
HOXC9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.1815
hsa-miR-938	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
MEF2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.6732
SRY	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.3214
PMC8046804-41467_2021_22478_MOESM11_ESM.xlsx-Del_AA-TCGA-Unnamed_42_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
natural killer cell mediated immunity	GO Biological Process Annotations 2015	1.0	null
dermatophytosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.371477
CTCF_fibroblast of skin of abdomen_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KOSC2	DepMap CRISPR Gene Dependency	1.0	3.98843
LOUCY	CCLE Cell Line Gene CNV Profiles	-1.0	-1.45236
ZNF284	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.96833
erythrocytic stage	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.586026
HEXIM1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.78658
CPXM1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.04797
primary bacterial infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.044198
peripheral portion of GPi	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.76921
plasma membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
OVKATE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.36714
disease by infectious agent	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.062877
hsa-miR-4257	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
THOC2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.11415
GSE140997_4_v_3_nsun6_human	RummaGEO Gene Perturbation Signatures	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-FS-A1ZB-06A-12R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
duodenum	HPA Tissue Protein Expression Profiles	1.0	0.793834
C16orf54	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.05009
SOHLH1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.77081
Ekl	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.536
PDPN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.21778
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-EK-A2RO-01A-11R-A18M-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
amyotrophic lateral sclerosis	GWASdb SNP-Disease Associations	1.0	0.548003
DBNDD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.78191
neuron part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.046794
NK-92 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.929
MOSPD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.08974
TRPS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.6589
toe	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.236332
ATF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.4587
ARAP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.14169
C10	DepMap CRISPR Gene Dependency	1.0	4.37468
UMUC7	DepMap CRISPR Gene Dependency	1.0	6.95997
ovary	GTEx Tissue Gene Expression Profiles	-1.0	-1.01057
ICC3	DepMap CRISPR Gene Dependency	1.0	6.95455
CTCF_K562_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
natural killer cell mediated cytotoxicity	GO Biological Process Annotations 2023	1.0	null
EFO21	CCLE Cell Line Gene CNV Profiles	-1.0	-2.27698
NEK4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.85331
acute salpingitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.785165
FU97	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1657
Mesothelioma_MESO_TCGA-MQ-A4LJ-01A-11R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
AMMECR1L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.8697
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-C5-A901-01A-11R-A37O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
scleroderma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.123685
nutrition disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.074148
LCLC-97TM1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.951519
BACH1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.79532
NFIL3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.7733
urinary system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.056196
IMR-32	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.835313
Bladder Urothelial Carcinoma_BLCA_TCGA-FD-A3SL-01A-21R-A22U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
adenoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.182957
GSE201309_1_v_6_matrine_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE152441,GSE152442_0_v_2_folic acid_human	RummaGEO Drug Perturbation Signatures	1.0	null
Lung adenocarcinoma_LUAD_TCGA-50-5931-01A-11R-1755-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-DU-A5TS-01A-11R-A28M-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ISG20	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.61431
type iii intermediate filament	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.40714
syringocystadenoma papilliferum	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.68136
myoepithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.711319
CAMA1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.38874
GEN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.54516
Head and Neck squamous cell carcinoma_HNSC_TCGA-P3-A5QF-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
germ layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.327164
YIPF3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.08829
TEX261	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.38809
Liver hepatocellular carcinoma_LIHC_TCGA-DD-A4NR-01A-11R-A311-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ZHX1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.27212
peripheral nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.241196
Immune system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.25
disease of mental health	GWASdb SNP-Disease Associations	1.0	0.040274
membrane part	GO Cellular Component Annotations 2015	1.0	null
IZ in posteroinferior (ventral) parietal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.62241
NCI-H2196	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.039
membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.159074
FAM136A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.19352
brain	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.271604
HT1197	DepMap CRISPR Gene Dependency	1.0	2.04235
FOXA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.9644
spindle cell hemangioma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.881882
PSMD10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.66364
Head and Neck squamous cell carcinoma_HNSC_TCGA-CN-A49C-01A-11R-A24H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
DU4475	DepMap CRISPR Gene Dependency	1.0	2.24263
keratosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.59742
CYLD	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.0096
Bladder Urothelial Carcinoma_BLCA_TCGA-S5-AA26-01A-11R-A38B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
root	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.21846
RL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.892504
fruit body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.282837
HCC1954	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.62712
integral component of membrane	GO Cellular Component Annotations 2015	1.0	null
GSE162892_4_v_0_sox9_human	RummaGEO Gene Perturbation Signatures	1.0	null
mature t-cell and nk-cell lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.129072
neck	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061886
medial ganglionic eminence_8 pcw_M_13058	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.01179
Bladder Urothelial Carcinoma_BLCA_TCGA-2F-A9KO-01A-11R-A38B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCI-H1793	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0034
MEF2A	ENCODE Transcription Factor Targets	1.0	null
ring stage	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.624254
tcell	GeneRIF Biological Term Annotations	1.0	null
CCDC61	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.90336
496100415_PCx_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.0412
SNU-182	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.934485
POLI	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.35047
PLEKHA8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.23718
plumule	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.23176
ORC2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.38681
hsa-miR-4635	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
CIAO1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.87359
gametangium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.572018
JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.8331
vagina	GTEx Tissue Gene Expression Profiles	1.0	1.19867
carpal tunnel syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.169571
SLC5A3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.68375
SLC29A3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.52274
smooth muscle cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.894589
sebocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.814815
nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.578016
NR2F2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.88045
SBDS	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.86424
primary auditory cortex (core)_3 yrs_F_12836	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.06775
forelimb	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.584022
extracellular matrix part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.320077
leaf	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.233731
UBE2F	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.62849
GSE120612_6_v_3_etoposide_human	RummaGEO Drug Perturbation Signatures	1.0	null
RPS6KB1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.21915
intrinsic component of membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
SIK3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.52137
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
posterior (caudal) superior temporal cortex (area 22c)_24 pcw_M_12288	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.31319
NFIC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.9807
urethral disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.103332
RPL13	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.19015
Prostate adenocarcinoma_PRAD_TCGA-XQ-A8TA-01A-11R-A36G-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PSMD3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.77599
GSE243199_1_v_0_paclitaxel_human	RummaGEO Drug Perturbation Signatures	1.0	null
disease of anatomical entity	GWASdb SNP-Disease Associations	1.0	0.025928
extracellular region part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.174087
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-4713-01A-01R-1277-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
FOS::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.4999
LMO4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.7774
HCC33	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.968198
sweat gland disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.576161
hypophysis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.566428
BLUE1	DepMap CRISPR Gene Dependency	1.0	2.06332
dorsal cochlear nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	2.20577
RNASEH2A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.11713
ZNF781	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.87941
ZNF317	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.63995
retroperitoneal sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.820847
connective tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.632335
PCDHB10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.2615
FOS	ENCODE Transcription Factor Targets	1.0	null
epidermis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.68404
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-FU-A3TQ-01A-11R-A22U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
IZ in caudal perirhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.1944
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-VS-A8EL-01A-11R-A37O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HOXC12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.1409
hippocampus (hippocampal formation)_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.98681
ZNF766	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.5376
GON7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.74069
mediodorsal nucleus of thalamus_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.05013
spindle cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.191097
Kidney Chromophobe_KICH_TCGA-KL-8346-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCI-H650	COSMIC Cell Line Gene CNV Profiles	1.0	2.10992
Brain Lower Grade Glioma_LGG_TCGA-HT-7467-01A-11R-2027-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
abnormality of the nervous system	GWASdb SNP-Phenotype Associations	1.0	0.055379
Pheochromocytoma and Paraganglioma_PCPG_TCGA-QR-A6H2-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
DYNLL2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.49745
Natural killer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.414
primary motor cortex (area M1, area 4)_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.09854
ACBD4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.13581
Xeroderma pigmentosum	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.325
ZNF367	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.55612
primary visual cortex (striate cortex, area V1/17)_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.68148
hippocampus (hippocampal formation)_13 yrs_F_12831	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.44294
bizarre leiomyoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.55291
PMC8709578-elife-69843-supp2.xlsx-MIX_Ctr-Nearest_Ensembl_MIXL1	Rummagene Transcription Factor Associations 2026	1.0	null
NCI-H1693	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.995822
CDX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.5929
TCF21	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.81716
primary auditory cortex (core)_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.15699
NFKB1-27076634-BEAS2B-HUMAN-LUNG-INFLAMMATION	ChEA Transcription Factor Targets 2022	1.0	null
RINT1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.98587
epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.307528
animal	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
PMC4858740-ncomms11473-s2.xls-HAdV-D9_Cr1b_Library_2-Hit_name_CENPX	Rummagene Transcription Factor Associations 2026	1.0	null
TERF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.59294
Erythema elevatum diutinum	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.064
hematopoietic stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.088649
TRIM68	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.29201
NCI-H2461	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.89049
Kidney renal clear cell carcinoma_KIRC_TCGA-CJ-4912-01A-01R-1426-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ABHD8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.90799
clec2	GeneRIF Biological Term Annotations	1.0	null
amygdaloid complex_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.36681
macromolecular complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.554318
hsa-miR-573	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
spindle cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.1554
ZNF277	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.36372
ZNF569	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.59402
H3K4me3_fibroblast of skin of abdomen_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
GSE224311_3_v_4_chaetocin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
ZFP36L2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.55757
follicular dendritic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.345928
thigh	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.466111
ZNF493	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.25557
primary somatosensory cortex (area S1, areas 3,1,2)_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.43196
Bladder Urothelial Carcinoma_BLCA_TCGA-GC-A3BM-01A-11R-A22U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CHAGO-K-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GSE217776,GSE217829_1_v_6_sgf29_human	RummaGEO Gene Perturbation Signatures	1.0	null
plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.01112
orbital frontal cortex_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.873923
columnar cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.388158
GNAO1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.49127
myoepithelioma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.337242
axon	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.118403
FAM43A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.37774
Kidney Chromophobe_KICH_TCGA-KL-8334-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
T-47D	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.27937
alopecia universalis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.452208
Sebum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.505
dermatitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.330295
TMCO6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.46299
protein binding	GO Molecular Function Annotations 2015	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-LG-A6GG-01A-11R-A311-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ELK1::HOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.1306
PRKDC	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.54676
Malaria	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.6
FOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.1924
paravermis of cerebellum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.877055
NCI-H1703	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.75022
companion cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.628697
head	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.24119
HBMEC cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.582
apocrine sweat gland neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.61128
RAB17	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.99804
GPR143	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.07136
lateral nucleus of pulvinar	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.980682
peripheral nerve sheath neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.303781
Cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.093
ABRA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.22944
GDM1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.91093
behavioral abnormality	GWASdb SNP-Phenotype Associations	1.0	0.082572
PA1	DepMap CRISPR Gene Dependency	1.0	2.11634
496100614_PCx_no dementia_TBI_84_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.25199
medial septal nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.0379
primary motor cortex (area M1, area 4)_3 yrs_F_12836	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.968233
HCC4017	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.19924
mixed cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.339073
CTCF_GM12892_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
alopecia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.12825
primary auditory cortex (core)_13 pcw_M_12888	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.95353
SCLC-22H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.30595
hippocampus (hippocampal formation)_16 pcw_M_12879	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.20976
anterior (rostral) cingulate (medial prefrontal) cortex_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.56722
GSE120612_7_v_3_etoposide_human	RummaGEO Drug Perturbation Signatures	1.0	null
496100634_HIP_no dementia_TBI_84_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.54247
Liver hepatocellular carcinoma_LIHC_TCGA-G3-A7M9-01A-23R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hair follicle outer root sheath	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.80615
carbohydrate binding	GO Molecular Function Annotations 2015	1.0	null
inferolateral temporal cortex (area TEv, area 20)_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.21872
POU3F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.7842
MHC protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.81
angiosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.313189
non-hodgkin lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.067411
body wall	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.81379
Liver hepatocellular carcinoma_LIHC_TCGA-CC-A8HS-01A-11R-A36F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-AK-3451-01A-02R-1188-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RPRD1A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.72365
LS1034	CCLE Cell Line Gene CNV Profiles	1.0	2.00098
MEIS2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.4595
ear	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.074344
myiasis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.720058
G121	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00397
SSTR1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.54769
KASUMI6	CCLE Cell Line Gene CNV Profiles	-1.0	-1.52462
BEX3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.00846
ATF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.1716
NYNRIN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.26161
MVB12A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.38688
germ cell and embryonal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.096067
fallopian tube disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.471089
hsa-miR-4763-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
stomach disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.061558
ventrolateral prefrontal cortex_4 mos_M_12296	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.95526
hypertrophy of breast	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.373698
netherton syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.739894
496100665_PCx_probable Alzheimer's disease_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.39787
urethritis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.205254
ADAR	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.61852
CLDN34	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.16156
spiradenoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.2909
OVMANA	DepMap CRISPR Gene Dependency	1.0	2.08224
hsa-miR-194	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
bowel dysfunction	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.196779
ROS cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.62
polymorphic layer of rostral subiculum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.85803
immune response	GO Biological Process Annotations 2015	1.0	null
mesoderm	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.317679
SOX21	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.8826
skin atrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.781069
Prostate adenocarcinoma_PRAD_TCGA-KK-A7AQ-01A-11R-A33R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
LP-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
ES8	DepMap CRISPR Gene Dependency	1.0	5.71302
C11orf58	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.12955
hypertrichosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.917611
squamous cell neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.68906
Phellem	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.737
FOXG1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.7655
HSF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	47.2021
H3K9ac_fibroblast of dermis_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
BOK	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.95923
constipation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.201962
HCC2279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.64232
reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.712959
Epidermal lamellar body	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.032
POLR2A_A549_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
follicular stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.738442
496100455_FWM_dementia_TBI_86_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.00195
multiform (lateral) division of MD	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.16142
USP14	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.94783
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-EK-A2RK-01A-11R-A18M-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
fallopian tube	GTEx Tissue Gene Expression Profiles	-1.0	-1.01057
primary auditory cortex (core)_21 pcw_F_12365	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.22684
MEF2D	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.1073
C8orf76	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.32861
ZFP28	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.79605
NCI-H2170	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04492
SNU-81	COSMIC Cell Line Gene Mutation Profiles	1.0	null
SNU-475	COSMIC Cell Line Gene Mutation Profiles	1.0	null
TCF7L2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.3763
PRPF40A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.1541
NKX1-1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.24709
ZR7530	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.39704
KINGS-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
C16orf87	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.01454
OV-17R	COSMIC Cell Line Gene Mutation Profiles	1.0	null
PMC5557398-13045_2017_515_MOESM1_ESM.xlsx-S8-DUX4_SpecDMCs-Unnamed_3_DUX4	Rummagene Transcription Factor Associations 2026	1.0	null
PCNX2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.5468
intracellular	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.669425
GATA3_MCF-7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H630	COSMIC Cell Line Gene Mutation Profiles	1.0	null
TMEM191C	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.71508
TSR2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.62746
mite infestation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.386308
monogenic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.394118
cellular_component	LOCATE Predicted Protein Localization Annotations	1.0	null
PBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.0
MDA-MB-330	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.830923
TBX15	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.91655
FOSL1::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.9869
Small intestine	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
FOXS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.3369
GSE155972_0_v_1_setdb1_human	RummaGEO Gene Perturbation Signatures	1.0	null
SH2D2A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.14153
GSE162892_3_v_5_isox_human	RummaGEO Drug Perturbation Signatures	-1.0	null
HMGXB3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.70038
cerebellar cortex_10 mos_M_12977	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.34218
myopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.068096
HSPB9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.53726
PMC10758738-BLOODA_ADV-2023-010385-mmc2.xlsx-SuppTable_S6_Classifier_params-HOXA_KMT2A_classifier_KMT2A	Rummagene Transcription Factor Associations 2026	1.0	null
AMDHD2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.10944
LYSMD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.50086
cystic teratoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.313552
seminal vesicle	HPA Tissue Protein Expression Profiles	1.0	0.793834
CAMLG	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.83653
MEF2C	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	54.2168
renal cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.106069
PMC10916124-12864_2024_10174_MOESM1_ESM.xlsx-Supplementary_Table_6-The_downstream_genes_targeted_by_FLI1_The_ligand_vs_receptor_pairs_genes_FLI1	Rummagene Transcription Factor Associations 2026	1.0	null
ghost	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.485156
STAT3	ENCODE Transcription Factor Targets	1.0	null
H3K4me3_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
protophloem	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.176425
central nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.251934
inner SZ in midlateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.38009
Mesothelioma_MESO_TCGA-MQ-A4LP-01A-11R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
caudal portion of VFC (area 44)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-2.37094
Disease by infectious agent	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.039
PMC4330252-gni-12-181-s004.pdf-124-GZF1_GZF1	Rummagene Transcription Factor Associations 2026	1.0	null
Skin disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.198
membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
CAMA-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14238
INMT	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.27823
TC71	CCLE Cell Line Gene CNV Profiles	-1.0	-1.38083
ZNF652	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.629
pseudoxanthoma elasticum	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.23353
Kidney renal clear cell carcinoma_KIRC_TCGA-B8-4621-01A-01R-1503-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ZNF8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.8301
FOXA1-27270436-LNCAP-HUMAN-PROSTATE-CARCINOMA	ChEA Transcription Factor Targets 2022	1.0	null
NCIH23	CCLE Cell Line Gene CNV Profiles	1.0	1.6151
NFYC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.9291
auditory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.048371
A4/FUK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.835313
Lung adenocarcinoma_LUAD_TCGA-55-6969-01A-11R-1949-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
bipolar affective disorder	GWASdb SNP-Phenotype Associations	1.0	0.427593
GSE201309_5_v_8_matrine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
eye	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.10926
ZNF35	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.0999
cutaneous mycosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.333218
OTULIN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.99736
TMEM151B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.61916
primary somatosensory cortex (area S1, areas 3,1,2)_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.904417
MCF10F	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.11209
cognitive disorder	GWASdb SNP-Disease Associations	1.0	0.086433
UBA3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.51266
cutaneous t cell lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.139753
ALDH1B1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.99777
RBM15B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.40349
ZNF383	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.74839
Brain Lower Grade Glioma_LGG_TCGA-S9-A7QY-01A-11R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CALHM2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.23165
CLTA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.63012
skin	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	2.00545
GSE224294_4_v_2_ngly1_human	RummaGEO Gene Perturbation Signatures	1.0	null
protein homodimerization activity	GO Molecular Function Annotations 2015	1.0	null
NAGA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.99686
ZNF175	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.30722
leukocyte mediated immunity	GO Biological Process Annotations 2015	1.0	null
seed	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.219485
BATF	ENCODE Transcription Factor Targets	1.0	null
NKX6-1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.2954
reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.258417
pedunculo(pontine) tegmental  nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.952087
COLO-320-HSR	COSMIC Cell Line Gene Mutation Profiles	1.0	null
malignant syringoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	2.3959
Lung squamous cell carcinoma_LUSC_TCGA-63-A5MT-01A-21R-A26W-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HBL-100	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.86148
CCDC115	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.26906
Bladder Urothelial Carcinoma_BLCA_TCGA-K4-A4AB-01B-12R-A28M-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE212330_1_v_3_azacitidine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE193351_4_v_2_ruxolitinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
DDX6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.30875
MDAMB453	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.758685
layer I of piriform cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.13343
sialoglycoprotein	GeneRIF Biological Term Annotations	1.0	null
spindle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.444085
GSE227698_2_v_4_g0s2_human	RummaGEO Gene Perturbation Signatures	1.0	null
SYNGR1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.86415
vestibular labyrinth	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.093326
NDUFA4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.5554
CCNE2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.04909
hypersensitivity reaction disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.053978
ZBED6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.72652
Whole body	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
OLIG3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.6524
Kidney renal clear cell carcinoma_KIRC_TCGA-B4-5832-01A-11R-1672-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SCAMP4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.85093
pseudosarcomatous fibromatosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.460506
POLR2A_H54_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Arthritis	DisGeNET Gene-Disease Associations	1.0	null
CES2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.87037
gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.800626
EFM-192A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.86148
HPDL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.68763
ONECUT1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.3289
TGDS	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.04026
ZR751	CCLE Cell Line Gene CNV Profiles	1.0	1.76753
Skin Cutaneous Melanoma_SKCM_TCGA-EB-A4XL-01A-11R-A27Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
collagen trimer	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.241356
mouth disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.060079
CNPY2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.19823
STAT3	JASPAR Predicted Transcription Factor Targets	1.0	null
FOXA3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.1053
GNAQ	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.4069
TTLL3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.64014
MAGT1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.67604
SSNA1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.18739
RNF225	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.48202
sweat	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.41215
cell killing	GO Biological Process Annotations 2015	1.0	null
MINK1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.61536
YAPC	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.90052
mouth	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05612
hair follicle bulge stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.535833
pityriasis rubra pilaris	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.801974
T47D	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	2.40471
GSE181003_1_v_0_selinexor_human	RummaGEO Drug Perturbation Signatures	1.0	null
abnormal motor neuron morphology	GWASdb SNP-Phenotype Associations	1.0	0.467264
TC-71	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14238
PMC11982601-IMM-175-84-s005.xlsx-Fig5D_LPS-Innate_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
CEP192	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.13306
MM253	DepMap CRISPR Gene Dependency	1.0	2.91577
hair follicle inner root sheath	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.30928
choroid plexus of the fourth ventricle	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.06655
immune effector process	GO Biological Process Annotations 2015	1.0	null
thorax	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.588031
carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.04083
ATXN2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.30338
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4161-01A-02R-1325-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
FOS	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.0537
NCI-H2073	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.96207
IDH-wildtype glioblastoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.042
MZ in caudal perirhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.845679
hematopoietic cell	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
gingival hypertrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.60147
GSE162892_4_v_2_sox9_human	RummaGEO Gene Perturbation Signatures	-1.0	null
PHF14	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.09595
NCI-H1581	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.837971
THAP3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.7665
GSE152441,GSE152442_0_v_5_folic acid_human	RummaGEO Drug Perturbation Signatures	1.0	null
primary visual cortex (striate cortex, area V1/17)_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.929337
Head and Neck squamous cell carcinoma_HNSC_TCGA-CN-4739-01A-02R-1514-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
U266B1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.77834
Pilar sheath acanthoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.366
keratoacanthoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.681495
CTAGE4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.61345
IZ in ventrolateral prefrontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.14467
PPARG	JASPAR Predicted Transcription Factor Targets	1.0	null
anterior (rostral) cingulate (medial prefrontal) cortex_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.16514
uterine benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.615529
Perturb_9446_KO_STK25_SRP356933	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-20.0
AGAP4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.53959
EID3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.82615
intracellular part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.698663
SPI1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.12206
ZBTB32	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.8228
MARK2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.4655
LACTB	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.99515
TMEM126A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.91048