association dataset threshold value standardized value stable GeneRIF Biological Term Annotations 1.0 null IZ in superolateral temporal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.912946 Head and Neck squamous cell carcinoma_HNSC_TCGA-CQ-A4CE-01A-11R-A266-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null G130 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.859708 Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-MY-A5BF-11A-11R-A26T-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null nucleus subputaminalis Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.846583 hsa-miR-4307 TargetScan Predicted Conserved microRNA Targets 1.0 0.181316 Sarcoma_SARC_TCGA-3B-A9HJ-01A-11R-A38C-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null hsa-miR-4731-5p TargetScan Predicted Nonconserved microRNA Targets 1.0 0.809003 Adrenocortical carcinoma_ACC_TCGA-OR-A5KT-01A-11R-A29S-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null mature GeneRIF Biological Term Annotations 1.0 null Brain Lower Grade Glioma_LGG_TCGA-CS-4938-01B-11R-1896-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null hsa-miR-4735-5p TargetScan Predicted Nonconserved microRNA Targets 1.0 0.921135 inferior colliculus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.66989 layer IIIu of area 35r Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.14875 cellular_component GO Cellular Component Annotations 2015 1.0 null hsa-miR-3941 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.809003 lateral subdivision of BNST Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.43939 layer III of caudal entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.61358 Prostate adenocarcinoma_PRAD_TCGA-G9-6496-11A-01R-1789-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null MZ in dorsomedial extrastriate cortex (V2) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.920584 NR2F1 JASPAR Predicted Transcription Factor Targets 1.0 null Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-7238-11A-01R-2016-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null GATA3_T47D_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Skin Cutaneous Melanoma_SKCM_TCGA-D3-A1Q5-06A-11R-A18T-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null hsa-miR-302c TargetScan Predicted Nonconserved microRNA Targets 1.0 1.13535 Lung squamous cell carcinoma_LUSC_TCGA-18-3421-01A-01R-0980-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Bladder Urothelial Carcinoma_BLCA_TCGA-G2-A2EC-01A-11R-A180-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null layer VI of caudal entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.08814 FOXA1_T47D_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null hematologic cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.954943 COLO 678 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -2.89749 MAFA MotifMap Predicted Transcription Factor Targets 1.0 null H3K9me3_A549_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null Lung adenocarcinoma_LUAD_TCGA-97-8175-01A-11R-2287-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null NUGC-4 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.844337 cytoplasm GO Cellular Component Annotations 2015 1.0 null FOS_MCF 10A_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null lateral orbital frontal cortex (area 12/47) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -2.7896 H4K5ac_IMR90 Roadmap Epigenomics Histone Modification Site Profiles 1.0 null glucose metabolism disease GWASdb SNP-Disease Associations 1.0 0.233244 Head and Neck squamous cell carcinoma_HNSC_TCGA-DQ-7596-01A-11R-2232-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Acute Myeloid Leukemia_LAML_TCGA-AB-2916-03A-01T-0734-13 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null CEBPB_HeLa-S3_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null SG in ventrolateral prefrontal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 3.34509 ACHN CCLE Cell Line Gene CNV Profiles 1.0 2.03157 TT COSMIC Cell Line Gene Mutation Profiles 1.0 null MDAMB436 CCLE Cell Line Gene CNV Profiles -1.0 -1.3595 NCIH838 CCLE Cell Line Gene CNV Profiles 1.0 2.12197 VZ in hypothalamic portion Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.02886 outer CP in subgenual (subcallosal) cingulate cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.894569 b-lymphocyte TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.527928 hsa-miR-628-5p TargetScan Predicted Conserved microRNA Targets 1.0 0.598666 HGC-27 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.14828 Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-HM-A6W2-06A-22R-A33Z-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null hsa-miR-4254 TargetScan Predicted Conserved microRNA Targets 1.0 0.248923 Pheochromocytoma and Paraganglioma_PCPG_TCGA-W2-A7UY-01A-11R-A35L-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null intracellular part GO Cellular Component Annotations 2015 1.0 null Adrenocortical carcinoma_ACC_TCGA-OR-A5LN-01A-11R-A29S-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Lung adenocarcinoma_LUAD_TCGA-44-4112-01A-01R-1107-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null HLE COSMIC Cell Line Gene Mutation Profiles 1.0 null SP1 ENCODE Transcription Factor Targets 1.0 null KDM5A ENCODE Transcription Factor Targets 1.0 null HCC202 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.984093 HARA CCLE Cell Line Gene CNV Profiles 1.0 1.41108 EZH2_H1-hESC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Prostate adenocarcinoma_PRAD_TCGA-J9-A52E-01A-11R-A26U-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null MYC_MCF 10A_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Bladder Urothelial Carcinoma_BLCA_TCGA-ZF-A9R7-01A-11R-A38B-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Brain Lower Grade Glioma_LGG_TCGA-S9-A6U0-01A-12R-A32Q-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null SKM-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.76283 TCF12 ENCODE Transcription Factor Targets 1.0 null NCI-H2135 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.925788 Pancreatic adenocarcinoma_PAAD_TCGA-H6-A45N-01A-11R-A26U-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null SP in ventrolateral prefrontal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.07171 lymph node TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.265038 hsa-miR-200b TargetScan Predicted Nonconserved microRNA Targets 1.0 0.965816 Lung adenocarcinoma_LUAD_TCGA-55-7815-01A-11R-2170-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null compared GeneRIF Biological Term Annotations 1.0 null HS-SULTAN Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.13328 Acute Myeloid Leukemia_LAML_TCGA-AB-2986-03A-01T-0734-13 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null marker GeneRIF Biological Term Annotations 1.0 null COLO-783 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.48241 P3HR1 CCLE Cell Line Gene CNV Profiles 1.0 1.49367 hsa-miR-3920 TargetScan Predicted Conserved microRNA Targets 1.0 0.034317 hsa-miR-3591-3p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.20993 Kidney renal papillary cell carcinoma_KIRP_TCGA-DW-7838-01A-11R-2139-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Brain Lower Grade Glioma_LGG_TCGA-DB-A64X-01A-11R-A29R-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null feature GeneRIF Biological Term Annotations 1.0 null Skin Cutaneous Melanoma_SKCM_TCGA-EE-A20I-06A-11R-A18U-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Bladder Urothelial Carcinoma_BLCA_TCGA-BT-A20U-11A-11R-A14Y-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Skin Cutaneous Melanoma_SKCM_TCGA-ER-A19N-06A-11R-A18S-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Lung adenocarcinoma_LUAD_TCGA-95-7944-01A-11R-2187-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null lymphoid cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.220378 EZH2_mammary epithelial cell_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Prostate adenocarcinoma_PRAD_TCGA-G9-6378-01A-11R-1789-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null CAPAN2 CCLE Cell Line Gene CNV Profiles -1.0 -1.35325 disease DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.340539 UACC257 CCLE Cell Line Gene CNV Profiles -1.0 -1.38187 H3K4me1_Muscle Satellite Cultured Cells Roadmap Epigenomics Histone Modification Site Profiles 1.0 null Lung adenocarcinoma_LUAD_TCGA-44-2662-01A-01R-0946-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null hsa-miR-429 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.880544 hsa-miR-4294 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.809003 NFIC JASPAR Predicted Transcription Factor Targets 1.0 null NCIH2126 CCLE Cell Line Gene CNV Profiles 1.0 1.33284 NCI-H596 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.08156 first GeneRIF Biological Term Annotations 1.0 null complement GeneRIF Biological Term Annotations 1.0 null Mesothelioma_MESO_TCGA-MQ-A4LM-01A-11R-A34F-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null HUH-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.48241 hsa-miR-377 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.965816 hsa-miR-636 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.99187 hsa-miR-4639-5p TargetScan Predicted Nonconserved microRNA Targets 1.0 0.809003 CEBPB_IMR-90_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null lymphoma DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.114713 NCI-H820 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.06138 JHH-7 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.985635 Bladder Urothelial Carcinoma_BLCA_TCGA-FD-A43U-01A-11R-A23W-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null dorsal raphe nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.846711 SP in rostral cingulate cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.864373 H2AFZ_osteoblast_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Uterine Carcinosarcoma_UCS_TCGA-N5-A4RM-01A-11R-A28V-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null NFE2_GM12878_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null disease GWASdb SNP-Disease Associations 1.0 0.031838 H3K27me3_cardiac mesoderm_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null burden GeneRIF Biological Term Annotations 1.0 null Brain Lower Grade Glioma_LGG_TCGA-FG-7637-01A-11R-2090-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null neoplasms GeneRIF Biological Term Annotations 1.0 null MDA-MB-361 COSMIC Cell Line Gene CNV Profiles 1.0 4.51153 upper (rostral) rhombic lip Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.82081 RCM-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.851678 Pancreatic adenocarcinoma_PAAD_TCGA-Q3-A5QY-01A-12R-A32O-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null EFM-192C Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.983292 polysensory temporal cortex (area 22p) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.995786 H2AFZ_B cell_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-4721 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.07142 HCC1493 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.903877 NCI-H1437 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.48241 SUM 52PE Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.29389 IZ in posteroinferior (ventral) parietal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.61259 marginal zone b-cell lymphoma DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.590558 G122 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.08233 Brain Lower Grade Glioma_LGG_TCGA-DB-A4X9-01A-11R-A26U-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-5431-01A-01R-1514-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null hsa-miR-4653-5p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.99187 hsa-miR-586 TargetScan Predicted Conserved microRNA Targets 1.0 0.541706 abnormality of the endocrine system GWASdb SNP-Phenotype Associations 1.0 0.06806 multiform (lateral) division of MD Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.94255 hsa-miR-3612 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.7397 corpus callosum Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.954417 Skin Cutaneous Melanoma_SKCM_TCGA-EB-A5VV-06A-11R-A32P-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null TP63-23658742-EP156T-HUMAN ChEA Transcription Factor Binding Site Profiles 1.0 null abnormality of the nervous system GWASdb SNP-Phenotype Associations 1.0 0.046439 Lung squamous cell carcinoma_LUSC_TCGA-92-8064-01A-11R-2247-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null outer plexiform zone in extrastriate cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.85826 Pheochromocytoma and Paraganglioma_PCPG_TCGA-QR-A70Q-01A-13R-A35K-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Lung squamous cell carcinoma_LUSC_TCGA-98-8022-01A-11R-2247-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null NCI-H1975 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.908387 Kidney renal papillary cell carcinoma_KIRP_TCGA-UZ-A9PM-01A-21R-A38C-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null abnormality of carbohydrate metabolism/homeostasis GWASdb SNP-Phenotype Associations 1.0 0.163586 olfactory tubercle Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.999094 IZ in caudal perirhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.43667 Lung adenocarcinoma_LUAD_TCGA-44-A4SS-01A-11R-A24X-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Bladder Urothelial Carcinoma_BLCA_TCGA-GV-A3QG-01A-11R-A220-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null YY1 MotifMap Predicted Transcription Factor Targets 1.0 null hsa-miR-4436b-5p TargetScan Predicted Conserved microRNA Targets 1.0 0.436802 NCI-H2170 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.859708 CTCF_retinal pigment epithelial cell_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null JHOS-2 COSMIC Cell Line Gene Mutation Profiles 1.0 null Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-6955-01A-11R-2016-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null U87MG CCLE Cell Line Gene CNV Profiles -1.0 -1.73724 EJM Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.03323 Head and Neck squamous cell carcinoma_HNSC_TCGA-P3-A6T4-01A-11R-A34R-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null HUPT4 CCLE Cell Line Gene CNV Profiles 1.0 1.86978 minimal GeneRIF Biological Term Annotations 1.0 null HCC2935 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.832731 U178 CCLE Cell Line Gene CNV Profiles -1.0 -1.7443 GATA3 ENCODE Transcription Factor Targets 1.0 null MDA-MB-330 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.17738 HCC1263 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.36424 hsa-miR-766 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.809003 Lung adenocarcinoma_LUAD_TCGA-55-6982-01A-11R-1949-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null diseasespecific GeneRIF Biological Term Annotations 1.0 null Acute Myeloid Leukemia_LAML_TCGA-AB-2959-03A-01T-0734-13 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null NCI-H889 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.64516 olfactory bulb Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.39276 ML-2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.74544 leukemia cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.826523 Lung adenocarcinoma_LUAD_TCGA-86-8672-01A-21R-2403-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null H2AFZ_endothelial cell of umbilical vein_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null FOS_MCF 10A_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-3167 TargetScan Predicted Conserved microRNA Targets 1.0 0.766596 Brain Lower Grade Glioma_LGG_TCGA-VM-A8CF-01A-11R-A36H-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null hsa-miR-4691-3p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.07142 GATA1 ChEA Transcription Factor Targets 1.0 null blood TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null hsa-miR-539 TargetScan Predicted Conserved microRNA Targets 1.0 0.632343 ventral tegmental area Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.14593 HCC60 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.826384 HINFP JASPAR Predicted Transcription Factor Targets 1.0 null acquired metabolic disease GWASdb SNP-Disease Associations 1.0 0.129336 SK-N-FI Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.28791 hsa-miR-3652 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.40969 MDAMB361 CCLE Cell Line Gene CNV Profiles 1.0 2.77656 provided GeneRIF Biological Term Annotations 1.0 null animal TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.053477 hsa-miR-4293 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.880544 Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-C5-A7UI-01A-11R-A36F-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null hsa-miR-3619-3p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.2992 Skin Cutaneous Melanoma_SKCM_TCGA-DA-A1I0-06A-11R-A20F-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Head and Neck squamous cell carcinoma_HNSC_TCGA-UF-A718-01A-22R-A34R-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null chronic lymphocytic leukemia cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 1.60216 outer CP in ventrolateral prefrontal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.923233 HCC1954 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.03839 stage GeneRIF Biological Term Annotations 1.0 null E2A MotifMap Predicted Transcription Factor Targets 1.0 null Lung adenocarcinoma_LUAD_TCGA-91-8499-01A-11R-2403-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Lung adenocarcinoma_LUAD_TCGA-78-7152-01A-11R-2039-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null H2AFZ_GM12878_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null VMRCLCP CCLE Cell Line Gene CNV Profiles -1.0 -1.49909 hsa-miR-4695-3p TargetScan Predicted Conserved microRNA Targets 1.0 1.45615 clinical GeneRIF Biological Term Annotations 1.0 null hsa-miR-3161 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.7397 Mesothelioma_MESO_TCGA-MQ-A6BR-01A-11R-A34F-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null hsa-miR-876-5p TargetScan Predicted Conserved microRNA Targets 1.0 0.766596 STAT1 ChEA Transcription Factor Targets 1.0 null SP in caudal hippocampal proper Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.10612 Lung squamous cell carcinoma_LUSC_TCGA-77-A5GB-01B-11R-A27Q-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null MONOMAC6 CCLE Cell Line Gene CNV Profiles -1.0 -2.0044 hsa-miR-548u TargetScan Predicted Nonconserved microRNA Targets 1.0 1.99187 CEBPB_A549_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null NCI-H1092 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.03323 FOSL2_A549_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null FOS_MCF 10A_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null tissues, cell types and enzyme sources TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null H3K4me1_mammary epithelial cell_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null hsa-miR-580 TargetScan Predicted Conserved microRNA Targets 1.0 0.127531 hsa-miR-129-5p TargetScan Predicted Conserved microRNA Targets 1.0 0.283838 SKMEL28 CCLE Cell Line Gene CNV Profiles -1.0 -1.6447 cytoplasm COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.098109 Lung adenocarcinoma_LUAD_TCGA-55-6981-01A-11R-1949-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null hsa-miR-1254 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.809003 hsa-miR-4749-3p TargetScan Predicted Conserved microRNA Targets 1.0 0.32519 hsa-miR-520d-3p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.07142 abnormality of nervous system physiology GWASdb SNP-Phenotype Associations 1.0 0.066582 hsa-miR-323-3p TargetScan Predicted Conserved microRNA Targets 1.0 0.088999 hsa-miR-520c-3p TargetScan Predicted Nonconserved microRNA Targets 1.0 0.965816 Prostate adenocarcinoma_PRAD_TCGA-J4-A67M-01A-11R-A30B-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null hsa-miR-3611 TargetScan Predicted Conserved microRNA Targets 1.0 0.17031 Prostate adenocarcinoma_PRAD_TCGA-HC-7817-01B-11R-A29R-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null lymphoid tissue TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.309697 cuneate nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.59337 Lung adenocarcinoma_LUAD_TCGA-86-7953-01A-11R-2187-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Lung adenocarcinoma_LUAD_TCGA-50-5051-01A-21R-1858-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null hsa-miR-3140-3p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.20993 MDA-MB-415 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.984441 U-2 OS Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.14828 hsa-miR-342-3p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.99187 mantle cell lymphoma DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.300173 Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-G8-6324-01A-11R-2213-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null dorsal motor nucleus of the vagus (vagal nucleus) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.922684 Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-7438-01A-21R-2132-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null prognostic GeneRIF Biological Term Annotations 1.0 null Lung adenocarcinoma_LUAD_TCGA-55-7910-01A-11R-2170-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Brain Lower Grade Glioma_LGG_TCGA-HT-A74H-01A-11R-A32Q-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null hsa-miR-769-3p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.13535 Pheochromocytoma and Paraganglioma_PCPG_TCGA-QT-A5XJ-01A-11R-A35K-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null hsa-miR-4430 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.2992 hsa-miR-2052 TargetScan Predicted Conserved microRNA Targets 1.0 0.103424 MDA-MB-436 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.45988 behavioral abnormality GWASdb SNP-Phenotype Associations 1.0 0.11917 hsa-miR-514b-3p TargetScan Predicted Nonconserved microRNA Targets 1.0 0.843347 gland TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.051665 POLR2G_02_09 KnockTF Gene Expression Profiles with Transcription Factor Perturbations 1.0 4.04439 Brain Lower Grade Glioma_LGG_TCGA-VV-A86M-01A-11R-A36H-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null IZ in primary somatosensory cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.02117 hsa-miR-5096 TargetScan Predicted Conserved microRNA Targets 1.0 0.053794 SP in caudal midinferior temporal cortex (area TF) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.69047 hsa-miR-4424 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.13535 Acute Myeloid Leukemia_LAML_TCGA-AB-2971-03A-01T-0734-13 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null hsa-miR-1827 TargetScan Predicted Conserved microRNA Targets 1.0 0.127531 hsa-miR-302d TargetScan Predicted Nonconserved microRNA Targets 1.0 1.13535 hsa-miR-372 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.921135 FOS ENCODE Transcription Factor Targets 1.0 null AP-1 MotifMap Predicted Transcription Factor Targets 1.0 null hsa-miR-4802-5p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.40969 Pheochromocytoma and Paraganglioma_PCPG_TCGA-TT-A6YK-01A-11R-A35L-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null H2AFZ_A549_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-3116 TargetScan Predicted Conserved microRNA Targets 1.0 0.226173 EBC1 CCLE Cell Line Gene CNV Profiles 1.0 1.9776 choroid plexus of the fourth ventricle Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.972044 Lung squamous cell carcinoma_LUSC_TCGA-56-8624-01A-11R-2403-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null whole body TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null hsa-miR-200c TargetScan Predicted Nonconserved microRNA Targets 1.0 0.965816 cognitive disorder GWASdb SNP-Disease Associations 1.0 0.12555 KM12 COSMIC Cell Line Gene Mutation Profiles 1.0 null PK1 CCLE Cell Line Gene CNV Profiles -1.0 -1.42643 Prostate adenocarcinoma_PRAD_TCGA-YL-A8HK-01A-11R-A36G-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null SG in primary auditory cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.59832 FOSL2 ENCODE Transcription Factor Targets 1.0 null VMRC-LCD Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.90284 hsa-miR-4306 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.7397 Prostate adenocarcinoma_PRAD_TCGA-KK-A7B2-01A-12R-A32O-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null hsa-miR-4753-3p TargetScan Predicted Conserved microRNA Targets 1.0 0.248923 cd38 GeneRIF Biological Term Annotations 1.0 null Lung adenocarcinoma_LUAD_TCGA-55-6980-01A-11R-1949-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null all GWASdb SNP-Phenotype Associations 1.0 0.032883 EBC-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.34799 polymorphic layer of caudal subiculum Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.00519 ABL1_druginhibition_77_GSE24493 GEO Signatures of Differentially Expressed Genes for Kinase Perturbations 1.0 1.27729 Brain Lower Grade Glioma_LGG_TCGA-P5-A5EX-01A-12R-A28M-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null tissues, cell types and enzyme sources TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.053139 Type 1 diabetes mellitus_T lymphocyte_GSE10586 GEO Signatures of Differentially Expressed Genes for Diseases 1.0 1.48736 VZ in subcallosal region Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.26341 Pancreatic adenocarcinoma_PAAD_TCGA-3A-A9I5-01A-11R-A38C-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null MEF2A JASPAR Predicted Transcription Factor Targets 1.0 null Lung adenocarcinoma_LUAD_TCGA-95-7562-01A-11R-2241-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null KMS-28PE Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.81182 level GeneRIF Biological Term Annotations 1.0 null CP in midlateral temporal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.2578 interpeduncular nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.15075 GATA3 JASPAR Predicted Transcription Factor Targets 1.0 null hsa-miR-4254 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.809003 SNU-387 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.45988 Head and Neck squamous cell carcinoma_HNSC_TCGA-CN-4736-01A-01R-1436-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null inner CP in subgenual (subcallosal) cingulate cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.964236 immune system cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.950352 POU2F2 JASPAR Predicted Transcription Factor Targets 1.0 null H3K9me3_T-cell acute lymphoblastic leukemia_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null Bladder Urothelial Carcinoma_BLCA_TCGA-BT-A20N-11A-11R-A14Y-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null medial portion of STH Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.75471 H2AFZ_myotube_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Prostate adenocarcinoma_PRAD_TCGA-G9-6384-01A-11R-1789-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null H3K4me1_A549_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null Acute Myeloid Leukemia_LAML_TCGA-AB-2976-03A-01T-0734-13 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Kidney Chromophobe_KICH_TCGA-KN-8432-11A-01R-2315-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null layer V of area 35c Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.844175 Brain Lower Grade Glioma_LGG_TCGA-CS-4944-01A-01R-1470-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null outer CP in caudal perirhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.1111 OVCAR-4 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.934127 rapid GeneRIF Biological Term Annotations 1.0 null H3K4me1_Mesenchymal Stem Cell Derived Adipocyte Cultured Cells Roadmap Epigenomics Histone Modification Site Profiles 1.0 null DMS 53 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.84675 CEBPB_A549_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null hematopoietic cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.249329 MKN-45 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.70057 diabetes mellitus GWASdb SNP-Phenotype Associations 1.0 0.253792 hsa-miR-4436b-3p TargetScan Predicted Conserved microRNA Targets 1.0 0.145356 valproic acid_homo sapiens_gpl570_gse14973 GEO Signatures of Differentially Expressed Genes for Small Molecules -1.0 null hsa-miR-638 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.965816 JHOS4 CCLE Cell Line Gene CNV Profiles -1.0 -1.43832 hsa-miR-3158-3p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.0155 kidney disease GWASdb SNP-Disease Associations 1.0 0.947208 KLF2_02_29 KnockTF Gene Expression Profiles with Transcription Factor Perturbations -1.0 -0.63743 NCI-H187 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.985635 pineal body Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.14896 type 2 diabetes mellitus GWASdb SNP-Disease Associations 1.0 0.5171 caudal presubiculum (postsubiculum) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.946832 Rectum adenocarcinoma_READ_TCGA-AF-5654-01A-01R-1660-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Acute Myeloid Leukemia_LAML_TCGA-AB-2840-03A-01T-0734-13 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null CL-40 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.41106 H3K4me3_A549_hg19_2 ENCODE Histone Modification Site Profiles 1.0 null Bladder Urothelial Carcinoma_BLCA_TCGA-GC-A6I3-01A-11R-A31N-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null facilitate GeneRIF Biological Term Annotations 1.0 null Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-DR-A0ZM-01A-12R-A10U-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null abnormality of the genitourinary system GWASdb SNP-Phenotype Associations 1.0 0.067984 Kidney renal papillary cell carcinoma_KIRP_TCGA-BQ-5890-01A-11R-1592-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null H2AFZ_mammary epithelial cell_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Mesothelioma_MESO_TCGA-SC-A6LM-01A-11R-A34F-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null stratum lacunosum-moleculare of caudal CA1 Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.58012 Bladder Urothelial Carcinoma_BLCA_TCGA-FD-A62S-01A-11R-A30C-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null ACHN Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.844337 Sarcoma_SARC_TCGA-DX-A1KW-01A-22R-A24X-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null hsa-miR-218 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.55165 HCC1428 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.82764 FOXC1 JASPAR Predicted Transcription Factor Targets 1.0 null Bladder Urothelial Carcinoma_BLCA_TCGA-BT-A42F-01A-11R-A23W-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null lymphoid leukemia DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.222136 SZ in subgenual cingulate cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.97854 outer SZ in caudal midinferior temporal cortex (area TF) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.9672 Brain Lower Grade Glioma_LGG_TCGA-DU-A6S2-01A-21R-A32Q-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null hsa-miR-520a-3p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.0155 proteincoding GeneRIF Biological Term Annotations 1.0 null Kidney Chromophobe_KICH_TCGA-KL-8342-01A-11R-2315-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null dorsal cochlear nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.72441 SKNFI CCLE Cell Line Gene CNV Profiles 1.0 1.51253 CAPAN-2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.36424 HUPT3 CCLE Cell Line Gene CNV Profiles -1.0 -1.77496 TCF12_A549_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-2116 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.921135 hsa-miR-1257 TargetScan Predicted Conserved microRNA Targets 1.0 1.26663 Pheochromocytoma and Paraganglioma_PCPG_TCGA-QT-A7U0-01A-11R-A35K-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null NFYA JASPAR Predicted Transcription Factor Targets 1.0 null H3K18ac_IMR90 Roadmap Epigenomics Histone Modification Site Profiles 1.0 null cell part LOCATE Predicted Protein Localization Annotations 1.0 null MYC_MCF 10A_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null H3K4me2_A549_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-5973-01A-11R-1686-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null plasma membrane LOCATE Predicted Protein Localization Annotations 1.0 null OCI-LY-10 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.13032 SW 403 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.08233 HCC515 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.28444 techniques GeneRIF Biological Term Annotations 1.0 null EFM-19 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.85035 blood TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.252261 SZ in caudal cingulate cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.93472 Neuro D MotifMap Predicted Transcription Factor Targets 1.0 null SK-MEL-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.47174 Pancreatic adenocarcinoma_PAAD_TCGA-FB-A4P5-01A-11R-A26U-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null KMM-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.914926 intercalated nucleus of medulla Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.11684 Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-G8-6907-01A-11R-2213-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Bladder Urothelial Carcinoma_BLCA_TCGA-KQ-A41N-01A-11R-A33J-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Prostate adenocarcinoma_PRAD_TCGA-CH-5754-01A-11R-1580-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Bladder Urothelial Carcinoma_BLCA_TCGA-DK-A3IU-01A-11R-A20F-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null whole body TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.053478 GATA3_T47D_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-4635 TargetScan Predicted Conserved microRNA Targets 1.0 0.159923 HN Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.08233 HDAC6 ENCODE Transcription Factor Targets 1.0 null SPI1_GM12891_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null MIA PACA-2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.909164 gigantocellular reticular nuclei Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.47331 hsa-miR-377 TargetScan Predicted Conserved microRNA Targets 1.0 0.075559 CEBPB_A549_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null FOSL2_A549_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Adrenocortical carcinoma_ACC_TCGA-OR-A5J1-01A-11R-A29S-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Pheochromocytoma and Paraganglioma_PCPG_TCGA-QR-A6GT-01A-11R-A35K-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null diagnosis GeneRIF Biological Term Annotations 1.0 null certolizumab pegol_homo sapiens_gpl570_gse33585 GEO Signatures of Differentially Expressed Genes for Small Molecules -1.0 null Lung squamous cell carcinoma_LUSC_TCGA-77-8008-01A-21R-2187-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Bladder Urothelial Carcinoma_BLCA_TCGA-BT-A20J-01A-11R-A14Y-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null hsa-miR-2113 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.0155 reticulotegmental nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.882142 lymphocytic GeneRIF Biological Term Annotations 1.0 null HCC1428 CCLE Cell Line Gene CNV Profiles 1.0 1.76986 hsa-miR-4267 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.13535 parasolitary nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.61931 MEL-HO Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.850717 hsa-miR-302e TargetScan Predicted Nonconserved microRNA Targets 1.0 1.2992 Kidney renal papillary cell carcinoma_KIRP_TCGA-J7-8537-01A-11R-2404-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null HDAC6_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-3116 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.921135 H2AFZ_fibroblast of dermis_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Lung squamous cell carcinoma_LUSC_TCGA-39-5035-01A-01R-1443-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null EFM-192A Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.25082 MDA-MB-361 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 2.09481 abnormality of metabolism/homeostasis GWASdb SNP-Phenotype Associations 1.0 0.043083 Skin Cutaneous Melanoma_SKCM_TCGA-D3-A2JC-06A-11R-A18T-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null KMS28BM CCLE Cell Line Gene CNV Profiles -1.0 -2.18025 H3K27ac_osteoblast_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null carbohydrate metabolism disease GWASdb SNP-Disease Associations 1.0 0.233244 Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4988-01A-01R-1334-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null IZ in caudal midinferior temporal cortex (area TF) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.06651 A704 CCLE Cell Line Gene CNV Profiles 1.0 1.55405 used GeneRIF Biological Term Annotations 1.0 null CEBPB_MCF-7_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null intracellular COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.098109 H2AFZ_T-cell acute lymphoblastic leukemia_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CAKI-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.851678 C3A Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.842465 hsa-miR-513a-3p TargetScan Predicted Conserved microRNA Targets 1.0 0.015875 hsa-miR-3124-3p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.40969 Skin Cutaneous Melanoma_SKCM_TCGA-ER-A2NH-06A-11R-A18S-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Bladder Urothelial Carcinoma_BLCA_TCGA-FD-A5BT-01A-11R-A26T-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null muscle GTEx Tissue Gene Expression Profiles 1.0 0.891001 TP63 ChEA Transcription Factor Targets 1.0 null Head and Neck squamous cell carcinoma_HNSC_TCGA-UF-A7JJ-01A-11R-A34R-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null hsa-miR-1254 TargetScan Predicted Conserved microRNA Targets 1.0 0.205675 cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.551686 H3K9ac_fibroblast of dermis_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null reliable GeneRIF Biological Term Annotations 1.0 null RMG-I Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.13328 EFM-192B Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.14828 hsa-miR-4728-3p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.0155 Skin Cutaneous Melanoma_SKCM_TCGA-EE-A29P-06A-11R-A18T-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null SKM1 CCLE Cell Line Gene CNV Profiles -1.0 -1.65794 hsa-miR-4662a-3p TargetScan Predicted Nonconserved microRNA Targets 1.0 0.880544 H2AFZ_astrocyte_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null major depressive disorder GWASdb SNP-Disease Associations 1.0 0.877396 type ii diabetes mellitus GWASdb SNP-Phenotype Associations 1.0 0.441094 EZH2_keratinocyte_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null SKLU1 CCLE Cell Line Gene CNV Profiles 1.0 1.66868 KP-2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.33503 hsa-miR-4477a TargetScan Predicted Conserved microRNA Targets 1.0 0.082179 periaqueductal gray substance, dorsolateral portion Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.868138 H3K4me1_A549_hg19_2 ENCODE Histone Modification Site Profiles 1.0 null rostral (anterior) extramural migratory stream Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.964984 hsa-miR-4683 TargetScan Predicted Conserved microRNA Targets 1.0 0.059817 Kidney renal papillary cell carcinoma_KIRP_TCGA-BQ-7056-01A-11R-1965-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null HS746T CCLE Cell Line Gene CNV Profiles -1.0 -1.96159 facial nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.1226 Brain Lower Grade Glioma_LGG_TCGA-S9-A6TU-01A-12R-A32Q-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Kidney renal papillary cell carcinoma_KIRP_TCGA-MH-A55Z-01A-11R-A26U-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null hsa-miR-802 TargetScan Predicted Conserved microRNA Targets 1.0 0.17031 hsa-miR-4644 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.55165 Lung adenocarcinoma_LUAD_TCGA-49-4514-01A-21R-1858-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null 18974375-TableS5a GeneSigDB Published Gene Signatures 1.0 null blood GeneRIF Biological Term Annotations 1.0 null hsa-miR-133b TargetScan Predicted Nonconserved microRNA Targets 1.0 1.20993 leukocyte TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.082147 tool GeneRIF Biological Term Annotations 1.0 null H2BK120ac_H1 Roadmap Epigenomics Histone Modification Site Profiles 1.0 null Pheochromocytoma and Paraganglioma_PCPG_TCGA-QT-A5XL-01A-11R-A35K-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Rectum adenocarcinoma_READ_TCGA-EI-6511-01A-11R-1736-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null PPARG JASPAR Predicted Transcription Factor Targets 1.0 null HT-115 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.13032 EZH2_myotube_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-450b-3p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.07142 KDM5B_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-4729 TargetScan Predicted Conserved microRNA Targets 1.0 0.092495 inherent GeneRIF Biological Term Annotations 1.0 null Kidney renal papillary cell carcinoma_KIRP_TCGA-BQ-7061-11A-01R-1965-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null IZ in ventrolateral prefrontal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.25174 hsa-miR-4446-5p TargetScan Predicted Conserved microRNA Targets 1.0 0.226173 STAT1-20625510-HELA-HUMAN ChEA Transcription Factor Binding Site Profiles 1.0 null CAL-120 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.05188 888 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.18194 SK-MES-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.909164 LOVO Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.13328 IZ in lateral temporal-occipital cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.48165 disease of mental health GWASdb SNP-Disease Associations 1.0 0.051124 IZ in primary auditory cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.873106 PANC0327 CCLE Cell Line Gene CNV Profiles -1.0 -1.35882 QGP1 CCLE Cell Line Gene CNV Profiles -1.0 -1.70745 FOXA1_T47D_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null SOX10 MotifMap Predicted Transcription Factor Targets 1.0 null lateral intermediate part of entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.03888 H3K4me2_A549_hg19_2 ENCODE Histone Modification Site Profiles 1.0 null hsa-miR-185 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.55165 GATA1-19941826-K562-human ChEA Transcription Factor Binding Site Profiles 1.0 null Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-7406-11A-01R-2081-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null G96 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.985635 Lung squamous cell carcinoma_LUSC_TCGA-85-A50Z-01A-21R-A262-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null hematopoietic system TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.242983 clone GeneRIF Biological Term Annotations 1.0 null Pheochromocytoma and Paraganglioma_PCPG_TCGA-WB-A80O-01A-11R-A35L-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null mood disorder GWASdb SNP-Disease Associations 1.0 0.3484 HMY-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.908387 UACC-257 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.45988 ventricular (matrix) zone of pons Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.38776 Lung adenocarcinoma_LUAD_TCGA-55-6968-01A-11R-1949-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null hsa-miR-4652-3p TargetScan Predicted Conserved microRNA Targets 1.0 0.32519 Acute Myeloid Leukemia_LAML_TCGA-AB-2985-03A-01T-0734-13 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null STAT3 JASPAR Predicted Transcription Factor Targets 1.0 null cellular_component LOCATE Predicted Protein Localization Annotations 1.0 null SP in caudal cingulate cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.84495 HCC33 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.41691 Bladder Urothelial Carcinoma_BLCA_TCGA-GC-A3BM-11A-11R-A22U-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null hsa-miR-4427 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.843347 537 MEL Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.81182 hsa-miR-520b TargetScan Predicted Nonconserved microRNA Targets 1.0 0.965816 bcell GeneRIF Biological Term Annotations 1.0 null NFE2 ENCODE Transcription Factor Targets 1.0 null HCC1011 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.08708 Kidney renal papillary cell carcinoma_KIRP_TCGA-A4-A6HP-01A-11R-A31O-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-FU-A3TQ-01A-11R-A22U-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Bladder Urothelial Carcinoma_BLCA_TCGA-DK-A2I2-01A-11R-A180-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null residual GeneRIF Biological Term Annotations 1.0 null HEV_60Day_None_GSE53731 GEO Signatures of Differentially Expressed Genes for Viral Infections 1.0 1.66182 FOS_endothelial cell of umbilical vein_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null tonsil HPA Tissue Gene Expression Profiles 1.0 0.941128 cell part COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.098109 Prostate adenocarcinoma_PRAD_TCGA-G9-6498-01A-12R-A311-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null CP in caudal hippocampus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.00508 intracellular part COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.098109 Lung adenocarcinoma_LUAD_TCGA-91-A4BD-01A-11R-A24H-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null hsa-miR-3921 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.99187 urinary system disease GWASdb SNP-Disease Associations 1.0 0.211779 Bladder Urothelial Carcinoma_BLCA_TCGA-KQ-A41P-01A-12R-A33J-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null HUH1 CCLE Cell Line Gene CNV Profiles 1.0 1.51191 Lung squamous cell carcinoma_LUSC_TCGA-21-5782-01A-01R-1635-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Adrenocortical carcinoma_ACC_TCGA-OR-A5LK-01A-11R-A29S-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null especially GeneRIF Biological Term Annotations 1.0 null JJN-3 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.909164 hsa-miR-3614-5p TargetScan Predicted Conserved microRNA Targets 1.0 1.11641 Kidney Chromophobe_KICH_TCGA-KL-8334-01A-11R-2315-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null BHY CCLE Cell Line Gene CNV Profiles 1.0 2.09827 Head and Neck squamous cell carcinoma_HNSC_TCGA-TN-A7HL-01A-11R-A34R-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-EA-A3QE-01A-21R-A21T-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null BT-483 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.996459 lateral hemisphere of cerebellum Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.37865 NURR1 MotifMap Predicted Transcription Factor Targets 1.0 null SP in caudal perirhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.893781 Kidney renal papillary cell carcinoma_KIRP_TCGA-HE-A5NL-01A-11R-A26U-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null COLO668 CCLE Cell Line Gene CNV Profiles 1.0 1.97037 Skin Cutaneous Melanoma_SKCM_TCGA-EE-A2GC-06A-11R-A18T-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null abnormality of the urinary system GWASdb SNP-Phenotype Associations 1.0 0.834343 H2AFZ_fibroblast of lung_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Bladder Urothelial Carcinoma_BLCA_TCGA-GD-A76B-01A-11R-A32O-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null those GeneRIF Biological Term Annotations 1.0 null PAX3-FKHR-20663909-RHABDOMYOSARCOMA-HUMAN ChEA Transcription Factor Binding Site Profiles 1.0 null hsa-miR-1290 TargetScan Predicted Conserved microRNA Targets 1.0 0.159923 lymphocyte TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.221291 Pancreatic adenocarcinoma_PAAD_TCGA-3E-AAAZ-01A-11R-A38C-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null SK-MEL-28 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -2.3045 JVM3 CCLE Cell Line Gene CNV Profiles 1.0 1.60253 assessment GeneRIF Biological Term Annotations 1.0 null HS 746T Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -2.38948 FOXA2_A549_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null SNU-216 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.832731 Bladder Urothelial Carcinoma_BLCA_TCGA-GU-A764-01A-11R-A352-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Brain Lower Grade Glioma_LGG_TCGA-P5-A737-01A-11R-A32Q-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null oculomotor nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.5095 b-cell lymphoma DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.138752 abnormal glucose homeostasis GWASdb SNP-Phenotype Associations 1.0 0.180253 H3K4me1_fibroblast of dermis_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null NCI-H1944 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.25889 NCI-H522 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.17271 TEF-1 MotifMap Predicted Transcription Factor Targets 1.0 null blood GTEx Tissue Gene Expression Profiles 1.0 1.45859 RT4 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.995287 CTCF ENCODE Transcription Factor Targets 1.0 null OCIMY7 CCLE Cell Line Gene CNV Profiles -1.0 -1.55526 humanspecific GeneRIF Biological Term Annotations 1.0 null diabetes mellitus GWASdb SNP-Disease Associations 1.0 0.274708 Lung adenocarcinoma_LUAD_TCGA-44-6145-01A-11R-1755-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null H3K4me1_osteoblast_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null mental depression GWASdb SNP-Disease Associations 1.0 0.462554 Sarcoma_SARC_TCGA-MB-A8JL-01A-11R-A36F-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null EFO21 CCLE Cell Line Gene CNV Profiles -1.0 -3.20973 Lung squamous cell carcinoma_LUSC_TCGA-60-2712-01A-01R-0851-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Prostate adenocarcinoma_PRAD_TCGA-EJ-A65M-01A-11R-A29R-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null STAT3_MCF 10A_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-194 TargetScan Predicted Conserved microRNA Targets 1.0 0.131849 Lung adenocarcinoma_LUAD_TCGA-64-1676-01A-01R-0946-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null COLO 699 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.914926 pedunculo(pontine) tegmental nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.920327 hsa-miR-4699-3p TargetScan Predicted Nonconserved microRNA Targets 1.0 0.965816 Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-C5-A901-01A-11R-A37O-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Brain Lower Grade Glioma_LGG_TCGA-P5-A5F1-01A-11R-A28M-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Sarcoma_SARC_TCGA-Z4-A9VC-01A-11R-A37L-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Bladder Urothelial Carcinoma_BLCA_TCGA-ZF-AA4R-01A-11R-A38B-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null hsa-miR-186 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.55165 STAT3 ENCODE Transcription Factor Targets 1.0 null inner SZ in caudal midinferior temporal cortex (area TF) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.896672 TCC-PAN2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.851678 hsa-miR-1246 TargetScan Predicted Conserved microRNA Targets 1.0 0.283838 Prostate adenocarcinoma_PRAD_TCGA-HC-7079-01A-11R-1965-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null SG in midlateral extrastriate cortex (area 19) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.11531 hsa-miR-600 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.7397 chronic leukemia DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 1.57824 anterior amygdaloid area Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.01185 binet GeneRIF Biological Term Annotations 1.0 null SPI1 ENCODE Transcription Factor Targets 1.0 null Sarcoma_SARC_TCGA-DX-A8BU-01A-11R-A37L-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null PU.1 MotifMap Predicted Transcription Factor Targets 1.0 null non-hodgkin lymphoma DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.130779 OVMANA Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.996459 Bladder Urothelial Carcinoma_BLCA_TCGA-FD-A5BX-01A-11R-A26T-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null FOXA1 ENCODE Transcription Factor Targets 1.0 null Rectum adenocarcinoma_READ_TCGA-DC-5337-01A-01R-1660-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null MHH-ES-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.13032 Acute Myeloid Leukemia_LAML_TCGA-AB-2843-03A-01T-0736-13 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Prostate adenocarcinoma_PRAD_TCGA-KK-A7AW-01A-11R-A32O-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Brain Lower Grade Glioma_LGG_TCGA-S9-A6WM-01A-12R-A33Z-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Head and Neck squamous cell carcinoma_HNSC_TCGA-D6-6827-01A-11R-1915-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-DR-A0ZL-01A-11R-A10U-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null HUP-T3 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.58681 SPI1_HL-60_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null NCI-H196 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.842465 pituitary GTEx Tissue Gene Expression Profiles -1.0 -1.14239 membrane LOCATE Predicted Protein Localization Annotations 1.0 null chronic lymphocytic leukemia DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 1.58403 hsa-miR-182 TargetScan Predicted Conserved microRNA Targets 1.0 0.32519 stratum pyramidale of caudal CA3 Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.04801 HPAFII CCLE Cell Line Gene CNV Profiles 1.0 2.03208 Sarcoma_SARC_TCGA-DX-A6BE-01A-41R-A32Q-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null hsa-miR-650 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.7397 HCC2998 COSMIC Cell Line Gene Mutation Profiles 1.0 null leukemia DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 1.07698 pontobulbar body Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.890784 KDM5B ENCODE Transcription Factor Targets 1.0 null MDA-MB-157 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.24961 hsa-miR-4443 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.965816 Lung squamous cell carcinoma_LUSC_TCGA-85-A4CL-01A-41R-A26W-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null disease of cellular proliferation DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.546256 hsa-miR-2110 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.965816 Psoriasis vulgaris_Skin tissue_GSE13355 GEO Signatures of Differentially Expressed Genes for Diseases -1.0 -1.50525 Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-C5-A7X3-01A-11R-A352-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null CEBPB_K562_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null Kidney renal papillary cell carcinoma_KIRP_TCGA-AL-3466-01A-02R-1351-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null CALU-3 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.48241 PANC 03.27 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.19919 KM12 CCLE Cell Line Gene CNV Profiles 1.0 1.56441 information GeneRIF Biological Term Annotations 1.0 null EZH2_skeletal muscle myoblast_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-4715-5p TargetScan Predicted Nonconserved microRNA Targets 1.0 0.880544 KE97 CCLE Cell Line Gene CNV Profiles 1.0 1.45734 RT-112 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.74544 hsa-miR-4292 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.07142 Pheochromocytoma and Paraganglioma_PCPG_TCGA-SR-A6MZ-01A-11R-A35L-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null H3K4me1_endothelial cell of umbilical vein_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null hsa-miR-514 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.843347 LASV_FML29_8hr_24069471_GSE41300 GEO Signatures of Differentially Expressed Genes for Viral Infections 1.0 1.90285 Bladder Urothelial Carcinoma_BLCA_TCGA-UY-A78P-01A-12R-A36F-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null VZ in caudal hippocampal proper Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.29035 NCI-H1666 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.850717 Lung adenocarcinoma_LUAD_TCGA-44-3918-01A-01R-1107-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Lung squamous cell carcinoma_LUSC_TCGA-77-A5G1-01A-11R-A27Q-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Lung squamous cell carcinoma_LUSC_TCGA-J1-A4AH-01A-31R-A24H-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Skin Cutaneous Melanoma_SKCM_TCGA-DA-A1HY-06A-11R-A18T-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null tretinoin_homo sapiens_gpl6244_gds4180 GEO Signatures of Differentially Expressed Genes for Small Molecules 1.0 null BHY Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.64516 CEBPB ENCODE Transcription Factor Targets 1.0 null hematopoietic system TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null spleen HPA Tissue Gene Expression Profiles 1.0 1.38989 hsa-miR-4289 TargetScan Predicted Conserved microRNA Targets 1.0 0.997906 KMS-28BM Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.76385 MYC ENCODE Transcription Factor Targets 1.0 null hsa-miR-4677-5p TargetScan Predicted Nonconserved microRNA Targets 1.0 0.880544 FOS_MCF 10A_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null SP1_A549_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null H3K4me2_GM12878_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null HCC1500 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.914926 Acute Myeloid Leukemia_LAML_TCGA-AB-2956-03A-01T-0740-13 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null animal TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null hsa-miR-605 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.20993 KM-12 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 2.53185 H3K4me1_Breast vHMEC Roadmap Epigenomics Histone Modification Site Profiles 1.0 null hsa-miR-620 TargetScan Predicted Conserved microRNA Targets 1.0 0.131849 PAX3 ChEA Transcription Factor Targets 1.0 null hsa-miR-133a TargetScan Predicted Nonconserved microRNA Targets 1.0 1.20993 FOXL1 JASPAR Predicted Transcription Factor Targets 1.0 null LOX-IMVI Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.850717 depression GWASdb SNP-Phenotype Associations 1.0 0.77023 hsa-miR-579 TargetScan Predicted Conserved microRNA Targets 1.0 0.075559 Lung adenocarcinoma_LUAD_TCGA-05-4405-01A-21R-1858-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Lung squamous cell carcinoma_LUSC_TCGA-63-A5MG-01A-12R-A27Q-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null laterodorsal part of putamen Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.01321 chronic GeneRIF Biological Term Annotations 1.0 null Head and Neck squamous cell carcinoma_HNSC_TCGA-HD-8635-11A-01R-2403-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Rectum adenocarcinoma_READ_TCGA-F5-6811-01A-11R-1830-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null SG in rostral perirhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.990242 SPI1_GM12891_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-302a TargetScan Predicted Nonconserved microRNA Targets 1.0 1.13535 Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-7250-11A-01R-2016-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Head and Neck squamous cell carcinoma_HNSC_TCGA-CR-7385-01A-11R-2016-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null CTCF_T-cell acute lymphoblastic leukemia_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null EZH2 ENCODE Transcription Factor Targets 1.0 null Pheochromocytoma and Paraganglioma_PCPG_TCGA-WB-A81F-01A-11R-A35L-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null NCI-H2106 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.52851 NCIH196 CCLE Cell Line Gene CNV Profiles 1.0 2.52579 endocrine gland TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.052313 cell part GO Cellular Component Annotations 2015 1.0 null STAT3_MCF 10A_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null phenotypic abnormality GWASdb SNP-Phenotype Associations 1.0 0.032953 Prostate adenocarcinoma_PRAD_TCGA-J4-A67Q-01A-21R-A30B-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null G44 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.06138 hsa-miR-373 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.965816 connective tissue TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.052191 Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-Q1-A73Q-01A-21R-A32P-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4971-01A-01R-1334-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Liver hepatocellular carcinoma_LIHC_TCGA-FV-A3I0-01A-11R-A22L-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null H2AFZ ENCODE Transcription Factor Targets 1.0 null RCOR1_02_204 KnockTF Gene Expression Profiles with Transcription Factor Perturbations -1.0 -0.70044 ventral medial nucleus of thalamus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.15572 Skin Cutaneous Melanoma_SKCM_TCGA-EE-A3AB-06A-11R-A18S-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null H3K4me3_A549_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null hsa-miR-3064-5p TargetScan Predicted Conserved microRNA Targets 1.0 0.32519 hsa-miR-491-5p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.99187 Skin Cutaneous Melanoma_SKCM_TCGA-EB-A4OZ-01A-12R-A266-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null COLO678 CCLE Cell Line Gene CNV Profiles -1.0 -2.5925 adrenal gland GTEx Tissue Gene Expression Profiles -1.0 -0.959706 KDM5A_H1-hESC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null GTL-16 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.19919 5637 COSMIC Cell Line Gene Mutation Profiles 1.0 null cellular_component COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.098109 YY1 JASPAR Predicted Transcription Factor Targets 1.0 null Brain Lower Grade Glioma_LGG_TCGA-FG-A4MY-01A-11R-A26U-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null germinal center TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.558457 leukemia GeneRIF Biological Term Annotations 1.0 null lymph node HPA Tissue Gene Expression Profiles 1.0 1.32015 Uterine Carcinosarcoma_UCS_TCGA-NA-A4QV-01A-11R-A28V-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null SU-DHL-4 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.28972 SP1_A549_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-342-3p TargetScan Predicted Conserved microRNA Targets 1.0 0.997906 abnormal emotion/affect behavior GWASdb SNP-Phenotype Associations 1.0 0.315219 LBP-1 MotifMap Predicted Transcription Factor Targets 1.0 null Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-EA-A411-01A-11R-A24H-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Pheochromocytoma and Paraganglioma_PCPG_TCGA-P8-A6RX-01A-11R-A35K-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null SKMEL1 CCLE Cell Line Gene CNV Profiles -1.0 -1.49209 disease of metabolism GWASdb SNP-Disease Associations 1.0 0.077167 HCC2911 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.26504 Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-7242-11A-01R-2016-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null disease of anatomical entity GWASdb SNP-Disease Associations 1.0 0.028394 splenic marginal zone lymphoma DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.774523 Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-UC-A7PF-01A-11R-A352-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null HIF-2alpha_DEPLETION_GDS2760_643_human_Hypoxic MCF-7 breast cancer cells GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null MONOMAC1 CCLE Cell Line Gene CNV Profiles -1.0 -2.28072 Liver hepatocellular carcinoma_LIHC_TCGA-G3-A7M6-01A-11R-A33R-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null blood cancer cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.768197 hsa-miR-4328 TargetScan Predicted Conserved microRNA Targets 1.0 0.056784 Bladder Urothelial Carcinoma_BLCA_TCGA-FD-A3SL-01A-21R-A22U-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null UMC-11 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.903877 STAT4 MotifMap Predicted Transcription Factor Targets 1.0 null Pheochromocytoma and Paraganglioma_PCPG_TCGA-QR-A6GW-01A-11R-A35K-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null PRDM1 JASPAR Predicted Transcription Factor Targets 1.0 null hsa-miR-520e TargetScan Predicted Nonconserved microRNA Targets 1.0 1.0155 hsa-miR-4797-5p TargetScan Predicted Nonconserved microRNA Targets 1.0 0.880544 organ system cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.632384 cll GeneRIF Biological Term Annotations 1.0 null Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-6956-11A-01R-2016-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null hsa-miR-302b TargetScan Predicted Nonconserved microRNA Targets 1.0 1.13535 magnocellular (medial) division of MD Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.69406 IZ in medial temporal-occipital cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 2.09029 NCIH1385 CCLE Cell Line Gene CNV Profiles 1.0 1.57889 H3K9ac_GM12878_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null cases GeneRIF Biological Term Annotations 1.0 null Prostate adenocarcinoma_PRAD_TCGA-G9-6379-01A-11R-A31N-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null MKN45 CCLE Cell Line Gene CNV Profiles -1.0 -1.44908 Skin Cutaneous Melanoma_SKCM_TCGA-EE-A17Y-06A-11R-A18T-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null medioventral part of putamen Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.10219 hsa-miR-4793-5p TargetScan Predicted Nonconserved microRNA Targets 1.0 0.809003 MDA-MB-468 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.908387 hsa-miR-642b TargetScan Predicted Nonconserved microRNA Targets 1.0 0.880544 currently GeneRIF Biological Term Annotations 1.0 null Brain Lower Grade Glioma_LGG_TCGA-FG-8191-01A-11R-2256-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null lymphoblastic leukemia DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 1.35028 OUMS-23 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.859708 lateral hypothalamic area, anterior part Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -2.33669 hsa-miR-4448 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.880544 hsa-miR-203 TargetScan Predicted Conserved microRNA Targets 1.0 0.90397 Lung adenocarcinoma_LUAD_TCGA-50-5935-01A-11R-1755-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null hsa-miR-4680-3p TargetScan Predicted Conserved microRNA Targets 1.0 0.257113 cell COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.098109 Brain Lower Grade Glioma_LGG_TCGA-QH-A870-01A-11R-A36H-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null salivary gland GTEx Tissue Gene Expression Profiles 1.0 1.13865 Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-7235-11A-01R-2016-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null hsa-miR-3915 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.07142 SG in frontal polar cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 2.4101 SUPT11 CCLE Cell Line Gene CNV Profiles -1.0 -1.89013 Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-6935-11A-01R-1915-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Lung squamous cell carcinoma_LUSC_TCGA-60-2708-01A-01R-0851-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Lung adenocarcinoma_LUAD_TCGA-05-5423-01A-01R-1628-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null HCC70 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.11441 Lung squamous cell carcinoma_LUSC_TCGA-18-3406-01A-01R-0980-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null MDAMB134VI CCLE Cell Line Gene CNV Profiles 1.0 1.59176 H3K4me3_GM12878_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null monitoring GeneRIF Biological Term Annotations 1.0 null VCAP CCLE Cell Line Gene CNV Profiles -1.0 -1.70333 hsa-miR-4719 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.843347 Lung squamous cell carcinoma_LUSC_TCGA-77-A5G8-01B-11R-A27Q-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null ECC10 CCLE Cell Line Gene CNV Profiles -1.0 -1.65914 Sarcoma_SARC_TCGA-DX-A48N-01A-11R-A30C-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Brain Lower Grade Glioma_LGG_TCGA-HT-A5R5-01A-11R-A28M-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null IGR37 CCLE Cell Line Gene CNV Profiles -1.0 -1.32616 hsa-miR-583 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.2992 GATA2 JASPAR Predicted Transcription Factor Targets 1.0 null STAT3_MCF 10A_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null FOXA2 ENCODE Transcription Factor Targets 1.0 null hsa-miR-4789-3p TargetScan Predicted Conserved microRNA Targets 1.0 0.065994 H2AFZ_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null H2AFZ_CD14-positive monocyte_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Lung squamous cell carcinoma_LUSC_TCGA-66-2771-01A-01R-0980-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null lymphocytic leukemia cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 1.2452 hsa-miR-2276 TargetScan Predicted Conserved microRNA Targets 1.0 0.670641 marrow TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.353712 endogenous depression GWASdb SNP-Disease Associations 1.0 0.877396 COLO 206F Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.57839 Prostate adenocarcinoma_PRAD_TCGA-KK-A8IB-01A-11R-A36G-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null hsa-miR-4433 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.99187 Kidney renal papillary cell carcinoma_KIRP_TCGA-BQ-5885-01A-11R-1592-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Kidney renal clear cell carcinoma_KIRC_TCGA-CJ-4642-01B-01R-1305-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null H3K4me3_GM12865_hg19_2 ENCODE Histone Modification Site Profiles 1.0 null hsa-miR-1270 TargetScan Predicted Conserved microRNA Targets 1.0 0.145356 Acute Myeloid Leukemia_LAML_TCGA-AB-2911-03A-01T-0734-13 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Prostate adenocarcinoma_PRAD_TCGA-J4-A67O-01A-11R-A30B-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null hsa-miR-4715-3p TargetScan Predicted Nonconserved microRNA Targets 1.0 0.843347 EZH2_fibroblast of dermis_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null retroparafascicular area of thalamus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.80061 inconclusive GeneRIF Biological Term Annotations 1.0 null hsa-miR-488 TargetScan Predicted Conserved microRNA Targets 1.0 0.15008