association	dataset	threshold value	standardized value
sensory neuropathy	HPO Gene-Disease Associations	1.0	null
PMC12606276-41698_2025_1121_MOESM1_ESM.pdf-25-JUND_JUND	Rummagene Transcription Factor Associations 2026	1.0	null
Diabetes Mellitus, Type 2	CTD Gene-Disease Associations	1.0	1.09332
PMC2577427__F9	PFOCR Pathway Figure Associations 2024	1.0	null
Peptic Ulcer	DisGeNET Gene-Disease Associations	1.0	null
Nerve Degeneration	CTD Gene-Disease Associations	1.0	2.04528
leber optic atrophy	HPO Gene-Disease Associations	1.0	null
ion transmembrane transporter activity	GO Molecular Function Annotations 2015	1.0	null
PMC7335672__F9	PFOCR Pathway Figure Associations 2024	1.0	null
PMC7899164__F6	PFOCR Pathway Figure Associations 2024	1.0	null
PMC10055287-media-6.xlsx-intersection_genes_up-FOXJ1_FOXJ1	Rummagene Transcription Factor Associations 2026	1.0	null
abnormal respiratory electron transport chain	MPO Gene-Phenotype Associations	1.0	null
PMC2563957__F1	PFOCR Pathway Figure Associations 2024	1.0	null
PMC5429649__F11	PFOCR Pathway Figure Associations 2024	1.0	null
tonsil	HPA Tissue Protein Expression Profiles	-1.0	-1.25316
Low Tension Glaucoma	HuGE Navigator Gene-Phenotype Associations	1.0	null
Apnea	DisGeNET Gene-Phenotype Associations	1.0	null
single	GeneRIF Biological Term Annotations	1.0	null
amaurosis fugax	HPO Gene-Disease Associations	1.0	null
abnormal muscle tone	HPO Gene-Disease Associations	1.0	null
Hyperglycemia	CTD Gene-Disease Associations	1.0	1.71503
Drug-Induced Liver Injury	CTD Gene-Disease Associations	1.0	2.50838
Post Mi	DisGeNET Gene-Phenotype Associations	1.0	null
Childhood Leukemia	DisGeNET Gene-Disease Associations	1.0	null
Acidosis, Lactic	DisGeNET Gene-Phenotype Associations	1.0	null
Dilated Ventricles (Finding)	DisGeNET Gene-Phenotype Associations	1.0	null
greek	GeneRIF Biological Term Annotations	1.0	null
PMC8641993__F1	PFOCR Pathway Figure Associations 2024	1.0	null
Deafness	DisGeNET Gene-Phenotype Associations	1.0	null
abnormality of the immune system	HPO Gene-Disease Associations	1.0	null
Fetal Growth Retardation	CTD Gene-Disease Associations	1.0	1.96774
PMC12756533-mmc1.pdf-5-NR1I2_NR1I2	Rummagene Transcription Factor Associations 2026	1.0	null
Nonsyndromic Deafness	DisGeNET Gene-Disease Associations	1.0	null
abnormality of the genitourinary system	HPO Gene-Disease Associations	1.0	null
Congenital Abnormalities	CTD Gene-Disease Associations	1.0	1.55402
PMC9170821-JCMM-26-3183-s001.xlsx-Neu_DAPI_ERG_VaD_vs_NC-Gene_ERG	Rummagene Transcription Factor Associations 2026	1.0	null
transmembrane transport	GO Biological Process Annotations 2015	1.0	null
OVSAHO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-1.67823
PMC2962793__F1	PFOCR Pathway Figure Associations 2024	1.0	null
PMC8116547__F1	PFOCR Pathway Figure Associations 2024	1.0	null
Neoplasms	CTD Gene-Disease Associations	1.0	1.83753
MKN-74	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-1.07517
PMC8101445-mbc-32-475-s003.xlsx-HEK_Tim22_KD-Gene_names_AR	Rummagene Transcription Factor Associations 2026	1.0	null
PMC3763401__F1	PFOCR Pathway Figure Associations 2024	1.0	null
hsa-miR-186-5p	MiRTarBase microRNA Targets	1.0	null
PMC2915874__F4	PFOCR Pathway Figure Associations 2024	1.0	null
PMC7480058-95058-2020.08.29.20182899-10.xlsx-1ModuleKeyDrivers-Target_gene_symbol_that_KD_acts_upon_AR	Rummagene Transcription Factor Associations 2026	1.0	null
Hyperkinesis	CTD Gene-Disease Associations	1.0	1.08442
HM7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-0.845162
JRA - Juvenile rheumatoid arthritis_Peripheral blood mononuclear cell_GSE7753	GEO Signatures of Differentially Expressed Genes for Diseases	-1.0	-1.42517
abnormality of the cerebral vasculature	HPO Gene-Disease Associations	1.0	null
heterocyclic compound binding	GO Molecular Function Annotations 2015	1.0	null
inorganic cation transmembrane transporter activity	GO Molecular Function Annotations 2015	1.0	null
hypopigmented skin patches	HPO Gene-Disease Associations	1.0	null
PMC7495247__F1	PFOCR Pathway Figure Associations 2024	1.0	null
respiratory chain complex iv	GO Cellular Component Annotations 2015	1.0	null
modulates	GeneRIF Biological Term Annotations	1.0	null
organic cyclic compound metabolic process	GO Biological Process Annotations 2015	1.0	null
LOX-IMVI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-1.1189
Ovarian Diseases	CTD Gene-Disease Associations	1.0	1.06297
PMC9324879__F8	PFOCR Pathway Figure Associations 2024	1.0	null
Adenocarcinoma	DisGeNET Gene-Disease Associations	1.0	null
Liver Failure, Acute	CTD Gene-Disease Associations	1.0	1.40623
aplasia/hypoplasia of the cerebrum	HPO Gene-Disease Associations	1.0	null
NCI-H2081	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	1.0	1.1678
Adenomatous Polyposis Coli	DisGeNET Gene-Disease Associations	1.0	null
purine ribonucleoside triphosphate metabolic process	GO Biological Process Annotations 2015	1.0	null
ectopic calcification	HPO Gene-Disease Associations	1.0	null
amino	GeneRIF Biological Term Annotations	1.0	null
PMC6553502__F2	PFOCR Pathway Figure Associations 2024	1.0	null
localized skin lesion	HPO Gene-Disease Associations	1.0	null
PMC8843787__F1	PFOCR Pathway Figure Associations 2024	1.0	null
PMC7105880__F1	PFOCR Pathway Figure Associations 2024	1.0	null
PMC11925450-elife-96850-supp2.xlsx-DNMT1_KO_vs_DNMT1_L1TD1_dKO_res-geneName_DNMT1	Rummagene Transcription Factor Associations 2026	1.0	null
Motor Neuron Disease	DisGeNET Gene-Disease Associations	1.0	null
cardiac fibrosis	MPO Gene-Phenotype Associations	1.0	null
Mammary Neoplasms, Animal	CTD Gene-Disease Associations	1.0	2.88009
abnormality of coordination	HPO Gene-Disease Associations	1.0	null
ZR-75-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	1.0	1.1678
SNU-423	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-0.889957
PMC9170821-JCMM-26-3183-s001.xlsx-Astro_DAPI_ERG_VaD_vs_NC-Gene_ERG	Rummagene Transcription Factor Associations 2026	1.0	null
PMC3227781__F2	PFOCR Pathway Figure Associations 2024	1.0	null
Cachexia	DisGeNET Gene-Phenotype Associations	1.0	null
Scotoma	DisGeNET Gene-Phenotype Associations	1.0	null
purine nucleoside metabolic process	GO Biological Process Annotations 2015	1.0	null
PMC3651056__F2	PFOCR Pathway Figure Associations 2024	1.0	null
Liver Neoplasms	CTD Gene-Disease Associations	1.0	1.78625
cytb	GeneRIF Biological Term Annotations	1.0	null
rosiglitazone_rattus norvegicus_gpl341_skeletal muscle_gds3850	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
skeletal muscle atrophy	HPO Gene-Disease Associations	1.0	null
Aspirin Sensitivity	DisGeNET Gene-Phenotype Associations	1.0	null
postnatal growth retardation	MGI Mouse Phenotype Associations 2023	1.0	null
abnormality of muscle physiology	HPO Gene-Disease Associations	1.0	null
PMC5869742__F7	PFOCR Pathway Figure Associations 2024	1.0	null
Disease	HuGE Navigator Gene-Phenotype Associations	1.0	null
frameshift	GeneRIF Biological Term Annotations	1.0	null
abnormality of skin adnexa	HPO Gene-Disease Associations	1.0	null
night blindness	HPO Gene-Disease Associations	1.0	null
PMC11166884-mmc4.xlsx-Table_S3-Table_S3_proinflammatory-EC2_comparison_between_WT_and_TG_TCF15	Rummagene Transcription Factor Associations 2026	1.0	null
PMC6643872__F2	PFOCR Pathway Figure Associations 2024	1.0	null
Dyspepsia	HuGE Navigator Gene-Phenotype Associations	1.0	null
PMC6235217__F2	PFOCR Pathway Figure Associations 2024	1.0	null
hearing abnormality	HPO Gene-Disease Associations	1.0	null
PMC10592471-NIHMS1912771-supplement-7.xlsx-D-HEp3-Enh_vs_AA-up_genes-AA_up_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
MDA-MB-330	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	1.0	1.1678
olanzapine_rattus norvegicus_gpl1355_gds2608	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
ethanol_rattus norvegicus_gpl341_gds2107	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Carcinoma, Papillary	DisGeNET Gene-Disease Associations	1.0	null
nucleoside monophosphate metabolic process	GO Biological Process Annotations 2015	1.0	null
Disease Progression	HuGE Navigator Gene-Phenotype Associations	1.0	null
abnormality of the inner ear	HPO Gene-Disease Associations	1.0	null
Hemolytic-Uremic Syndrome	DisGeNET Gene-Disease Associations	1.0	null
Dermatitis	DisGeNET Gene-Disease Associations	1.0	null
glycosyl compound metabolic process	GO Biological Process Annotations 2015	1.0	null
morphological abnormality of the central nervous system	HPO Gene-Disease Associations	1.0	null
Heart Failure	DisGeNET Gene-Disease Associations	1.0	null
estradiol_homo sapiens_gpl570_gse5102	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
PMC6345883-41598_2018_37397_MOESM10_ESM.xlsx-AR_D0_VS_D14__TRANS-Gene_Name_AR	Rummagene Transcription Factor Associations 2026	1.0	null
abnormal heart layer morphology	MPO Gene-Phenotype Associations	1.0	null
line	GeneRIF Biological Term Annotations	1.0	null
deferasirox_homo sapiens_gpl570_gds3558	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
abnormal muscle physiology	MPO Gene-Phenotype Associations	1.0	null
decreased body weight	MPO Gene-Phenotype Associations	1.0	null
PMC4606863__F1	PFOCR Pathway Figure Associations 2024	1.0	null
single-organism metabolic process	GO Biological Process Annotations 2015	1.0	null
Tumor Angiogenesis	DisGeNET Gene-Phenotype Associations	1.0	null
KMS-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	1.0	1.1678
g6709a	GeneRIF Biological Term Annotations	1.0	null
Pain	DisGeNET Gene-Phenotype Associations	1.0	null
vorinostat_homo sapiens_gpl570_gse34880	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Keratoconus	DisGeNET Gene-Disease Associations	1.0	null
methylprednisolone_rattus norvegicus_gpl341_gds972	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
cation binding	GO Molecular Function Annotations 2015	1.0	null
Cardiovascular Morbidity	DisGeNET Gene-Phenotype Associations	1.0	null
Root Resorption	DisGeNET Gene-Disease Associations	1.0	null
migraine	HPO Gene-Disease Associations	1.0	null
cisplatin_homo sapiens_gpl570_gds3910	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
PMC3536591__F2	PFOCR Pathway Figure Associations 2024	1.0	null
PMC7402354__F2	PFOCR Pathway Figure Associations 2024	1.0	null
sevoflurane_homo sapiens_gpl570_gds2772	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
PMC5928575__F2	PFOCR Pathway Figure Associations 2024	1.0	null
decreased nerve conduction velocity	HPO Gene-Disease Associations	1.0	null
abnormality of the musculature	HPO Gene-Disease Associations	1.0	null
codon	GeneRIF Biological Term Annotations	1.0	null
establishment of localization	GO Biological Process Annotations 2015	1.0	null
Hepatomegaly	CTD Gene-Disease Associations	1.0	1.84481
myalgia	HPO Gene-Disease Associations	1.0	null
PMC6599319__F1	PFOCR Pathway Figure Associations 2024	1.0	null
PMC9218776-ADVS-9-2104640-s002.xlsx-SIM_-_Nurr1-Unnamed_1_SIM2	Rummagene Transcription Factor Associations 2026	1.0	null
PMC4292866__F11	PFOCR Pathway Figure Associations 2024	1.0	null
hsa-miR-744-5p	MiRTarBase microRNA Targets	1.0	null
abnormality of higher mental function	HPO Gene-Disease Associations	1.0	null
catalytic activity	GO Molecular Function Annotations 2015	1.0	null
NAMALWA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	1.0	1.1678
QGP-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	1.0	1.1678
Atrophy	CTD Gene-Disease Associations	1.0	1.82989
monovalent inorganic cation transport	GO Biological Process Annotations 2015	1.0	null
PMC12337709-mmc3.xlsx-Wild-type_vs_RAG1_KO_NK_cells-Unnamed_1_RAG1	Rummagene Transcription Factor Associations 2026	1.0	null
abdominal symptom	HPO Gene-Disease Associations	1.0	null
abnormal body size	MPO Gene-Phenotype Associations	1.0	null
Spinal Cord Diseases	CTD Gene-Disease Associations	1.0	1.25651
DOR 13	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-1.49716
colorectal	GeneRIF Biological Term Annotations	1.0	null
ion transport	GO Biological Process Annotations 2015	1.0	null
HCC2688	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	1.0	1.1678
metal ion binding	GO Molecular Function Annotations 2015	1.0	null
abnormality of the gastrointestinal tract	HPO Gene-Disease Associations	1.0	null
transport	GO Biological Process Annotations 2015	1.0	null
respiratory electron transport chain	GO Biological Process Annotations 2015	1.0	null
decreased body weight	HPO Gene-Disease Associations	1.0	null
visual impairment	HPO Gene-Disease Associations	1.0	null
nucleobase-containing compound metabolic process	GO Biological Process Annotations 2015	1.0	null
abnormality of the parathyroid physiology	HPO Gene-Disease Associations	1.0	null
Bronchospasm	DisGeNET Gene-Disease Associations	1.0	null
tetrapyrrole binding	GO Molecular Function Annotations 2015	1.0	null
abnormality of the hypothalamus-pituitary axis	HPO Gene-Disease Associations	1.0	null
PMC8269449__F1	PFOCR Pathway Figure Associations 2024	1.0	null
ethanol_rattus norvegicus_gpl341_gse3311	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
organelle inner membrane	GO Cellular Component Annotations 2015	1.0	null
Hyperalgesia	DisGeNET Gene-Phenotype Associations	1.0	null
Liver Cirrhosis	CTD Gene-Disease Associations	1.0	1.01928
cytochrome-c oxidase activity	GO Molecular Function Annotations 2015	1.0	null
sudden central visual loss	HPO Gene-Disease Associations	1.0	null
Zidovudine	CTD Gene-Chemical Interactions	1.0	null
soft tissue	HPA Tissue Protein Expression Profiles	-1.0	-0.904743
Death In Early Adulthood	DisGeNET Gene-Phenotype Associations	1.0	null
hsa-miR-423-5p	MiRTarBase microRNA Targets	1.0	null
CDC42	Hub Proteins Protein-Protein Interactions	1.0	null
effects	GeneRIF Biological Term Annotations	1.0	null
hypertension	HPO Gene-Disease Associations	1.0	null
abnormality of the vasculature	HPO Gene-Disease Associations	1.0	null
Septicemia	DisGeNET Gene-Disease Associations	1.0	null
constipation; dyspepsia; gastrointestinal diseases; irritable bowel syndrome	GAD Gene-Disease Associations	1.0	null
Acute Lung Injury	CTD Gene-Disease Associations	1.0	1.14989
STAT1_KD_GDS4754_159_human_JURKAT	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
PMC2824707__F1	PFOCR Pathway Figure Associations 2024	1.0	null
Serous carcinoma_Fallopian tube_GSE10971	GEO Signatures of Differentially Expressed Genes for Diseases	1.0	1.50247
cause	GeneRIF Biological Term Annotations	1.0	null
hsa-miR-1301-3p	MiRTarBase microRNA Targets	1.0	null
Isovaleryl-Coa Dehydrogenase Deficiency	DisGeNET Gene-Disease Associations	1.0	null
abnormality of the mitochondrion	HPO Gene-Disease Associations	1.0	null
PMC9675141__F6	PFOCR Pathway Figure Associations 2024	1.0	null
anterior hypopituitarism	HPO Gene-Disease Associations	1.0	null
Cardiomegaly	CTD Gene-Disease Associations	1.0	1.41424
PMC8763889__F2	PFOCR Pathway Figure Associations 2024	1.0	null
fulllength	GeneRIF Biological Term Annotations	1.0	null
cataract	HPO Gene-Disease Associations	1.0	null
Depressive Disorder	CTD Gene-Disease Associations	1.0	1.35213
abnormal total tissue mass	MPO Gene-Phenotype Associations	1.0	null
aortic dilatation	HPO Gene-Disease Associations	1.0	null
Hypopigmented Skin Patch	DisGeNET Gene-Phenotype Associations	1.0	null
KMS-28PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	1.0	1.1678
Hepatoblastoma	DisGeNET Gene-Disease Associations	1.0	null
abnormality of the globe	HPO Gene-Disease Associations	1.0	null
SR-786	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-1.81044
nucleotide	GeneRIF Biological Term Annotations	1.0	null
abnormal immune system physiology	MPO Gene-Phenotype Associations	1.0	null
reduced consciousness/confusion	HPO Gene-Disease Associations	1.0	null
hsa-let-7e-5p	MiRTarBase microRNA Targets	1.0	null
Rheumatoid Arthritis	DisGeNET Gene-Disease Associations	1.0	null
paclitaxel_homo sapiens_gpl570_gse11550	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Congenital Lactic Acidosis	DisGeNET Gene-Disease Associations	1.0	null
PMC8297972__F1	PFOCR Pathway Figure Associations 2024	1.0	null
arthrogryposis multiplex congenita	HPO Gene-Disease Associations	1.0	null
PMC6751615__F5	PFOCR Pathway Figure Associations 2024	1.0	null
abnormal postnatal growth	MPO Gene-Phenotype Associations	1.0	null
PMC4855107__F1	PFOCR Pathway Figure Associations 2024	1.0	null
nephrotic syndrome	HPO Gene-Disease Associations	1.0	null
single-organism cellular process	GO Biological Process Annotations 2015	1.0	null
membrane	GO Cellular Component Annotations 2015	1.0	null
Gnathostomiasis	DisGeNET Gene-Disease Associations	1.0	null
ribonucleoside triphosphate metabolic process	GO Biological Process Annotations 2015	1.0	null
abnormal blood homeostasis	MPO Gene-Phenotype Associations	1.0	null
paclitaxel_homo sapiens_gpl570_gse11552	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
abnormality of urine homeostasis	HPO Gene-Disease Associations	1.0	null
Hyperthyroidism	DisGeNET Gene-Disease Associations	1.0	null
termination	GeneRIF Biological Term Annotations	1.0	null
PMC3865857__F2	PFOCR Pathway Figure Associations 2024	1.0	null
hsa-miR-26a-5p	MiRTarBase microRNA Targets	1.0	null
methylprednisolone_rattus norvegicus_gpl85_gds253	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
PMC4102553__F5	PFOCR Pathway Figure Associations 2024	1.0	null
Diabetes	DisGeNET Gene-Disease Associations	1.0	null
PMC1852551__F4	PFOCR Pathway Figure Associations 2024	1.0	null
PMC3897272__F1	PFOCR Pathway Figure Associations 2024	1.0	null
Necrosis	CTD Gene-Disease Associations	1.0	2.41344
Liver Failure	CTD Gene-Disease Associations	1.0	1.23488
within	GeneRIF Biological Term Annotations	1.0	null
afg3l2	GeneRIF Biological Term Annotations	1.0	null
pulmonary hypertension	HPO Gene-Disease Associations	1.0	null
overexpression	GeneRIF Biological Term Annotations	1.0	null
Cystic Echinocccosis	DisGeNET Gene-Disease Associations	1.0	null
Aspirin Exacerbated Respiratory Disease	DisGeNET Gene-Disease Associations	1.0	null
PMC9576167__F1	PFOCR Pathway Figure Associations 2024	1.0	null
Fetal Death	CTD Gene-Disease Associations	1.0	1.06116
OVCAR-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-1.02983
abnormality of central motor function	HPO Gene-Disease Associations	1.0	null
Cardiomyopathy, Hypertrophic	CTD Gene-Disease Associations	1.0	1.06116
CL-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	1.0	1.1678
Bilateral Cataracts (Disorder)	DisGeNET Gene-Disease Associations	1.0	null
abnormal myocardial fiber physiology	MGI Mouse Phenotype Associations 2023	1.0	null
aminoterminal	GeneRIF Biological Term Annotations	1.0	null
NCI-H2198	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	1.0	1.1678
IM-95M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	1.0	1.1678
abnormal inflammatory response	MPO Gene-Phenotype Associations	1.0	null
mitochondrial membrane part	GO Cellular Component Annotations 2015	1.0	null
Amaurosis	DisGeNET Gene-Phenotype Associations	1.0	null
In situ melanoma of skin_Epidermis_GSE4587	GEO Signatures of Differentially Expressed Genes for Diseases	-1.0	-1.46306
PMC6961462-NIHMS1544104-supplement-Sup_Tab.xlsx-Sup_Table_3_a-Supplementary_Table_3_Genes_Regulated_by_A_MYB_in_Humans_and_Macaques_Bold_genes_with_reduced_expression_in_Group_3_MYB	Rummagene Transcription Factor Associations 2026	1.0	null
PMC9325148__F2	PFOCR Pathway Figure Associations 2024	1.0	null
missense	GeneRIF Biological Term Annotations	1.0	null
Anemia	CTD Gene-Disease Associations	1.0	1.89106
abnormality of the myocardium	HPO Gene-Disease Associations	1.0	null
PMC9515385__F11	PFOCR Pathway Figure Associations 2024	1.0	null
HT-55	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	1.0	1.1678
PMC3008507__F5	PFOCR Pathway Figure Associations 2024	1.0	null
COLO 829	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	1.0	1.1678
transporter activity	GO Molecular Function Annotations 2015	1.0	null
PMC4283519__F1	PFOCR Pathway Figure Associations 2024	1.0	null
PMC6977700-aging-12-102667-s004..xlsx-Stage4-The_identified_749_dysregulated_LmiRM-CTs_in_stage_4_of_MI_6_months_after_MI_using_our_method_MITF	Rummagene Transcription Factor Associations 2026	1.0	null
hsa-miR-99b-3p	MiRTarBase microRNA Targets	1.0	null
incoordination	HPO Gene-Disease Associations	1.0	null
hypertrichosis	HPO Gene-Disease Associations	1.0	null
Rett Syndrome	DisGeNET Gene-Disease Associations	1.0	null
Carcinoma, Ovarian Epithelial	DisGeNET Gene-Disease Associations	1.0	null
hearing loss, bilateral; hearing loss, sensorineural	GAD Gene-Disease Associations	1.0	null
transition metal ion binding	GO Molecular Function Annotations 2015	1.0	null
abnormality of cardiac morphology	HPO Gene-Disease Associations	1.0	null
aplasia/hypoplasia involving the central nervous system	HPO Gene-Disease Associations	1.0	null
molecular_function	GO Molecular Function Annotations 2015	1.0	null
Fascioliasis	DisGeNET Gene-Disease Associations	1.0	null
Infection By Spirocerca	DisGeNET Gene-Phenotype Associations	1.0	null
PMC5917448__F12	PFOCR Pathway Figure Associations 2024	1.0	null
g14804a	GeneRIF Biological Term Annotations	1.0	null
abnormal heart ventricle pressure	MPO Gene-Phenotype Associations	1.0	null
G96	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-0.983029
mammalian phenotype	MPO Gene-Phenotype Associations	1.0	null
PMC9537523-41467_2022_33364_MOESM7_ESM.xlsx-scores_wilcoxon_1_MONTH_ORG-EN2_n_EN2	Rummagene Transcription Factor Associations 2026	1.0	null
Pneumonitis	DisGeNET Gene-Disease Associations	1.0	null
abnormality of the macula	HPO Gene-Disease Associations	1.0	null
Metformin	CTD Gene-Chemical Interactions	1.0	null
Vascular Diseases	CTD Gene-Disease Associations	1.0	1.01814
monovalent inorganic cation transmembrane transporter activity	GO Molecular Function Annotations 2015	1.0	null
retardation	GeneRIF Biological Term Annotations	1.0	null
Diarrhea	CTD Gene-Disease Associations	1.0	1.28119
Neuroinflammation	WikiPathways Pathways 2024	1.0	null
HS 746T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-3.82101
abnormality of the skull	HPO Gene-Disease Associations	1.0	null
Breast Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
Testicular Diseases	CTD Gene-Disease Associations	1.0	1.15324
PMC12629827-mmc8.xlsx-DDR2_KD-symbol_AR	Rummagene Transcription Factor Associations 2026	1.0	null
abnormality of immune system physiology	HPO Gene-Disease Associations	1.0	null
Colon Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
Acute Coronary Syndrome	DisGeNET Gene-Disease Associations	1.0	null
Arteriosclerosis	DisGeNET Gene-Disease Associations	1.0	null
Capillariasis	DisGeNET Gene-Disease Associations	1.0	null
PMC10794925-mmc1.pdf-21-HOXD9_HOXD9	Rummagene Transcription Factor Associations 2026	1.0	null
purine ribonucleoside monophosphate metabolic process	GO Biological Process Annotations 2015	1.0	null
Delayed Puberty	DisGeNET Gene-Phenotype Associations	1.0	null
Abnormal Macular Morphology	DisGeNET Gene-Phenotype Associations	1.0	null
Hyperlipidemias	CTD Gene-Disease Associations	1.0	1.61621
Hypothermia	CTD Gene-Disease Associations	1.0	1.07057
abnormality of brain morphology	HPO Gene-Disease Associations	1.0	null
abnormal myocardial fiber morphology	MGI Mouse Phenotype Associations 2023	1.0	null
conserved	GeneRIF Biological Term Annotations	1.0	null
Addison Disease	DisGeNET Gene-Disease Associations	1.0	null
binding	GO Molecular Function Annotations 2015	1.0	null
oxidative phosphorylation	GO Biological Process Annotations 2015	1.0	null
Hypercholesterolemia	CTD Gene-Disease Associations	1.0	1.49432
Sarcocystosis	DisGeNET Gene-Disease Associations	1.0	null
Tremor	DisGeNET Gene-Phenotype Associations	1.0	null
PMC8044433-mmc4.xlsx-Sheet1-Subacute_LPS_Microglia_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
PMC3191732__F11	PFOCR Pathway Figure Associations 2024	1.0	null
NCI-H1793	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	1.0	1.1678
PMC5997503__F5	PFOCR Pathway Figure Associations 2024	1.0	null
PMC3535427__F1	PFOCR Pathway Figure Associations 2024	1.0	null
PMC3191732__F1	PFOCR Pathway Figure Associations 2024	1.0	null
HS 578T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-2.71104
Forgetful	DisGeNET Gene-Phenotype Associations	1.0	null
mitochondrial inheritance	HPO Gene-Disease Associations	1.0	null
Liver Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
Proteinuria	DisGeNET Gene-Phenotype Associations	1.0	null
KASUMI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	1.0	1.1678
Jet Lag Syndrome	DisGeNET Gene-Disease Associations	1.0	null
5q35 copy number variation	WikiPathways Pathways 2024	1.0	null
thickened skin	HPO Gene-Disease Associations	1.0	null
myopathy	MGI Mouse Phenotype Associations 2023	1.0	null
Dengue Fever	DisGeNET Gene-Disease Associations	1.0	null
PMC6358305__F2	PFOCR Pathway Figure Associations 2024	1.0	null
Bladder Neoplasm	DisGeNET Gene-Disease Associations	1.0	null
1-methyl-4-phenyl-2,3-dihydropyridinium	CTD Gene-Chemical Interactions	1.0	null
Zalcitabine	CTD Gene-Chemical Interactions	1.0	null
abnormality of peripheral nervous system electrophysiology	HPO Gene-Disease Associations	1.0	null
Asthenozoospermia	DisGeNET Gene-Disease Associations	1.0	null
Prostate Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
Hypotension	CTD Gene-Disease Associations	1.0	1.167
Abnormalities, Drug-Induced	CTD Gene-Disease Associations	1.0	1.96625
Mitochondrial Dna Mutation	DisGeNET Gene-Disease Associations	1.0	null
PMC9181267-mmc5.xls-FILTERED_OLD-INFvsYOUNG-INF_LUN-orthofinder_human_gene_names_TOPORS	Rummagene Transcription Factor Associations 2026	1.0	null
vitamin a_rattus norvegicus_gpl85_gds238	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
Memory Disorders	CTD Gene-Disease Associations	1.0	1.87858
Electron Transport Chain(Mus musculus)	WikiPathways Pathways 2014	1.0	null
Electron transport chain OXPHOS system in mitochondria	WikiPathways Pathways 2024	1.0	null
pioglitazone_rattus norvegicus_gpl1355_3 months_gds4019	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Liver Diseases	CTD Gene-Disease Associations	1.0	1.48556
abnormal retinal pigmentation	HPO Gene-Disease Associations	1.0	null
PMC3204848__F13	PFOCR Pathway Figure Associations 2024	1.0	null
PMC8063228__F6	PFOCR Pathway Figure Associations 2024	1.0	null
Guillain-Barre Syndrome	DisGeNET Gene-Disease Associations	1.0	null
PMC10592471-NIHMS1912771-supplement-7.xlsx-D-Enh_vs_AA-all_DE-Aza_atRA_DE_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
LN-18	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-2.30442
Sepsis_Hepatic Tissue_GSE1781	GEO Signatures of Differentially Expressed Genes for Diseases	1.0	1.38829
mitochondrial	GeneRIF Biological Term Annotations	1.0	null
HS 695T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-1.1189
ESTRADIOL VALERATE	DGIdb Drug Targets 2026	1.0	0.784178
Kidney Failure, Chronic	CTD Gene-Disease Associations	1.0	1.28088
Effects of nitric oxide	WikiPathways Pathways 2024	1.0	null
PMC7073720__F4	PFOCR Pathway Figure Associations 2024	1.0	null
abnormality of oral mucosa	HPO Gene-Disease Associations	1.0	null
Impaired Cognition	DisGeNET Gene-Disease Associations	1.0	null
Familial Primary Gastric Lymphoma	DisGeNET Gene-Disease Associations	1.0	null
Genetic Recurrent Myoglobinuria	DisGeNET Gene-Disease Associations	1.0	null
SCC-9	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-1.25232
PMC6275272-FEB4-8-1977-s006.docx-0-Supplementary_Table_S1_Downregulated_genes_under_MYC_knockdown_in_AMU-ML2_cells_1_MYC	Rummagene Transcription Factor Associations 2026	1.0	null
Goiter	DisGeNET Gene-Phenotype Associations	1.0	null
Pneumonia	DisGeNET Gene-Disease Associations	1.0	null
abnormality of the aorta	HPO Gene-Disease Associations	1.0	null
anorexia	HPO Gene-Disease Associations	1.0	null
abnormality of the teeth	HPO Gene-Disease Associations	1.0	null
PMC9913267__F3	PFOCR Pathway Figure Associations 2024	1.0	null
Influenza	DisGeNET Gene-Disease Associations	1.0	null
Glucose Intolerance	CTD Gene-Disease Associations	1.0	1.63294
abnormality of the gingiva	HPO Gene-Disease Associations	1.0	null
abnormality of the genital system	HPO Gene-Disease Associations	1.0	null
Palmoplantar Keratoderma With Deafness	DisGeNET Gene-Disease Associations	1.0	null
PMC5743847__F1	PFOCR Pathway Figure Associations 2024	1.0	null
PMC4008004__F1	PFOCR Pathway Figure Associations 2024	1.0	null
Skin Diseases	CTD Gene-Disease Associations	1.0	1.11809
abnormality of the anterior pituitary	HPO Gene-Disease Associations	1.0	null
abnormal eye morphology	HPO Gene-Disease Associations	1.0	null
PMC10810548-pone.0289518.s002.xlsx-SOM_w_identifiers-target_gene_GRHL3	Rummagene Transcription Factor Associations 2026	1.0	null
PMC4298325__F6	PFOCR Pathway Figure Associations 2024	1.0	null
SNU-719	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-0.936836
smooth muscle	HPA Tissue Protein Expression Profiles	-1.0	-1.25316
Fatty Liver Disease	DisGeNET Gene-Disease Associations	1.0	null
PMC9259482-41385_2022_495_MOESM1_ESM.xlsx-S13_neutrophils_Cluster_0-Supplemental_Table_12_Neutrophil_cluster_0_LPS_vs_LPS_il-1RA_aTNF_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
PMC11161599-41598_2024_63492_MOESM8_ESM.pdf-32-TRDC_S1PR5_POU2AF1_IL32_POU2AF1	Rummagene Transcription Factor Associations 2026	1.0	null
cardiomyopathy	HPO Gene-Disease Associations	1.0	null
PMC7000220-elife-50163-fig3-data1.xlsx-genes_SOM_xls-gene_symbol_GRHL3	Rummagene Transcription Factor Associations 2026	1.0	null
malabsorption	HPO Gene-Disease Associations	1.0	null
abnormality of the ear	HPO Gene-Disease Associations	1.0	null
abnormality of the cardiovascular system	HPO Gene-Disease Associations	1.0	null
abnormality of the upper urinary tract	HPO Gene-Disease Associations	1.0	null
Schizophrenia	DisGeNET Gene-Disease Associations	1.0	null
PMC9590125-40478_2022_1453_MOESM3_ESM.xlsx-NEUN_UNIQUE_DYS_GENES-OLIG2_TLE_vs_TL_log2FoldChange_1_padj_0_1_OLIG2	Rummagene Transcription Factor Associations 2026	1.0	null
purine ribonucleotide metabolic process	GO Biological Process Annotations 2015	1.0	null
abnormality of vision	HPO Gene-Disease Associations	1.0	null
transmembrane transporter activity	GO Molecular Function Annotations 2015	1.0	null
organelle part	GO Cellular Component Annotations 2015	1.0	null
alzheimer disease; ataxia; diabetes mellitus, type 2; disease; obesity; parkinson disease	GAD Gene-Disease Associations	1.0	null
PMC6669704__F1	PFOCR Pathway Figure Associations 2024	1.0	null
protein complex	GO Cellular Component Annotations 2015	1.0	null
abnormality of dental structure	HPO Gene-Disease Associations	1.0	null
Non-Small Cell Lung Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
Barrett Esophagus	DisGeNET Gene-Disease Associations	1.0	null
nd5	GeneRIF Biological Term Annotations	1.0	null
SOX10_KO_GDS3480_257_rat_Schwannoma cell line	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
growth delay	HPO Gene-Disease Associations	1.0	null
abnormality of the posterior segment of the eye	HPO Gene-Disease Associations	1.0	null
SU-DHL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-0.889957
PMC8299478__F1	PFOCR Pathway Figure Associations 2024	1.0	null
one	GeneRIF Biological Term Annotations	1.0	null
TK-10	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	1.0	1.1678
peptide	GeneRIF Biological Term Annotations	1.0	null
abnormality of nervous system physiology	HPO Gene-Disease Associations	1.0	null
Meningioma	DisGeNET Gene-Disease Associations	1.0	null
Sepsis	DisGeNET Gene-Disease Associations	1.0	null
possible	GeneRIF Biological Term Annotations	1.0	null
Mucosa-Associated Lymphoid Tissue Lymphoma	DisGeNET Gene-Disease Associations	1.0	null
abnormality of the cerebrum	HPO Gene-Disease Associations	1.0	null
infertile	GeneRIF Biological Term Annotations	1.0	null
abnormality of eye movement	HPO Gene-Disease Associations	1.0	null
PMC9336541-Table_3.XLSX-C-vs-H6-L_filter_annot-Unnamed_18_HMX1	Rummagene Transcription Factor Associations 2026	1.0	null
PMC5488057__F1	PFOCR Pathway Figure Associations 2024	1.0	null
Pain	CTD Gene-Disease Associations	1.0	1.25338
neurodevelopmental abnormality	HPO Gene-Disease Associations	1.0	null
Protruding Ear	DisGeNET Gene-Phenotype Associations	1.0	null
PMC545204__F3	PFOCR Pathway Figure Associations 2024	1.0	null
PMC8493693__F4	PFOCR Pathway Figure Associations 2024	1.0	null
abnormality of body height	HPO Gene-Disease Associations	1.0	null
molecule	GeneRIF Biological Term Annotations	1.0	null
ABL1_druginhibition_77_GSE24493	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	1.0	1.97439
pulmonary embolism	HPO Gene-Disease Associations	1.0	null
PMC11799530-12276_2024_1380_MOESM1_ESM.xlsx-DEG_KD_PC-Symbol_AR	Rummagene Transcription Factor Associations 2026	1.0	null
PMC6694122-41467_2019_11591_MOESM7_ESM.xlsx-b_GATA2_R361_mutant-cell_DEGs-Gene_GATA2	Rummagene Transcription Factor Associations 2026	1.0	null
abnormality of nervous system morphology	HPO Gene-Disease Associations	1.0	null
confirmed	GeneRIF Biological Term Annotations	1.0	null
Cerebral Cortical Atrophy	DisGeNET Gene-Disease Associations	1.0	null
PMC6781638__F4	PFOCR Pathway Figure Associations 2023	1.0	null
Pulmonary Edema	CTD Gene-Disease Associations	1.0	1.42696
PMC12337709-mmc3.xlsx-Wild-type_vs_RAG1_KO_Myeloid-Unnamed_1_RAG1	Rummagene Transcription Factor Associations 2026	1.0	null
Echinococcosis	DisGeNET Gene-Disease Associations	1.0	null
PMC8283158-mmc2.xlsx-TCF4_Glut-Gene_TCF4	Rummagene Transcription Factor Associations 2026	1.0	null
Drug Hypersensitivity	CTD Gene-Disease Associations	1.0	1.1294
abnormality of the optic disc	HPO Gene-Disease Associations	1.0	null
PMC8978805__F2	PFOCR Pathway Figure Associations 2024	1.0	null
lymphocytes	GeneRIF Biological Term Annotations	1.0	null
PMC10033690__F1	PFOCR Pathway Figure Associations 2024	1.0	null
involuntary movements	HPO Gene-Disease Associations	1.0	null
PMC6329627__F1	PFOCR Pathway Figure Associations 2024	1.0	null
proton transport	GO Biological Process Annotations 2015	1.0	null
endometrium	HPA Tissue Protein Expression Profiles	-1.0	-0.819308
abnormality of the abdominal organs	HPO Gene-Disease Associations	1.0	null
dimer	GeneRIF Biological Term Annotations	1.0	null
Fatigue	DisGeNET Gene-Phenotype Associations	1.0	null
PMC3039968__F2	PFOCR Pathway Figure Associations 2024	1.0	null
gastrointestinal obstruction	HPO Gene-Disease Associations	1.0	null
PMC9207209__F3	PFOCR Pathway Figure Associations 2024	1.0	null
PMC11046918-12967_2024_5211_MOESM4_ESM.xlsx-F_HT1080_FUS-DDIT3_regulated-Table_S2_Regulated_genes_between_scaffold-cultured_and_monolayer-cultured_cells_DDIT3	Rummagene Transcription Factor Associations 2026	1.0	null
Gingival Overgrowth	DisGeNET Gene-Phenotype Associations	1.0	null
Fever	CTD Gene-Disease Associations	1.0	1.24401
Lyme Disease	DisGeNET Gene-Disease Associations	1.0	null
PMC4146420__F1	PFOCR Pathway Figure Associations 2024	1.0	null
PMC7414992__F1	PFOCR Pathway Figure Associations 2024	1.0	null
increased circulating lactate level	MPO Gene-Phenotype Associations	1.0	null
PMC4646736__F2	PFOCR Pathway Figure Associations 2024	1.0	null
abnormality of cerebral artery	HPO Gene-Disease Associations	1.0	null
CI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-1.1189
Erythromelalgia	DisGeNET Gene-Disease Associations	1.0	null
truncated	GeneRIF Biological Term Annotations	1.0	null
Chloramphenicol	CTD Gene-Chemical Interactions	1.0	null
abnormality of the parathyroid gland	HPO Gene-Disease Associations	1.0	null
PMC9287735-mmc8.xlsx-MI_Related_Genes-TNF_MITF	Rummagene Transcription Factor Associations 2026	1.0	null
abnormality of cation homeostasis	HPO Gene-Disease Associations	1.0	null
gingival overgrowth	HPO Gene-Disease Associations	1.0	null
Neoplasm Metastasis	CTD Gene-Disease Associations	1.0	1.18226
alitretinoin_rattus norvegicus_gpl85_lung_gds2385	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
PMC6928094-395_2019_765_MOESM7_ESM.xls-DEGs_AR7_vs_Pre-patterned-List_of_differentially_expressed_genes_in_AR7_vs_Pre-patterned_cells_THRA	Rummagene Transcription Factor Associations 2026	1.0	null
myocardial fiber degeneration	MGI Mouse Phenotype Associations 2023	1.0	null
complete hearing loss; deafness; hearing loss, sensorineural; sensorineural hearing loss	GAD Gene-Disease Associations	1.0	null
abnormal nervous system electrophysiology	HPO Gene-Disease Associations	1.0	null
pancreatitis	HPO Gene-Disease Associations	1.0	null
abnormal urinary electrolyte concentration	HPO Gene-Disease Associations	1.0	null
Nervous System Malformations	CTD Gene-Disease Associations	1.0	1.14781
increased inflammatory response	MPO Gene-Phenotype Associations	1.0	null
estradiol_rattus norvegicus_gpl85_gds2311	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Cataract	DisGeNET Gene-Disease Associations	1.0	null
asthenospermia	GeneRIF Biological Term Annotations	1.0	null
abnormality of the mouth	HPO Gene-Disease Associations	1.0	null
abnormality of the adrenal glands	HPO Gene-Disease Associations	1.0	null
Nerve Degeneration	HuGE Navigator Gene-Phenotype Associations	1.0	null
sudden cardiac death	HPO Gene-Disease Associations	1.0	null
rosiglitazone	CTD Gene-Chemical Interactions	1.0	null
YMB-1-E	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	1.0	1.1678
peripheral neuropathy	HPO Gene-Disease Associations	1.0	null
Constipation	HuGE Navigator Gene-Phenotype Associations	1.0	null
cellular nitrogen compound metabolic process	GO Biological Process Annotations 2015	1.0	null
neoplasm of fatty tissue	HPO Gene-Disease Associations	1.0	null
Malaria	DisGeNET Gene-Disease Associations	1.0	null
Colonic Neoplasms	CTD Gene-Disease Associations	1.0	1.22177
PMC4028977__F1	PFOCR Pathway Figure Associations 2024	1.0	null
PMC5919962__F1	PFOCR Pathway Figure Associations 2024	1.0	null
PMC7526619__F1	PFOCR Pathway Figure Associations 2024	1.0	null
PMC5943908__F6	PFOCR Pathway Figure Associations 2024	1.0	null
protein binding	GO Molecular Function Annotations 2015	1.0	null
Amyloidosis	DisGeNET Gene-Disease Associations	1.0	null
decreased body size	MPO Gene-Phenotype Associations	1.0	null
FGFR3_KD_GDS4454_79_human_RT112	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
Selenium Micronutrient Network(Mus musculus)	WikiPathways Pathways 2014	1.0	null
decreased facial expression	HPO Gene-Disease Associations	1.0	null
HCT-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	1.0	1.1678
cox	GeneRIF Biological Term Annotations	1.0	null
Mammary Neoplasms, Experimental	CTD Gene-Disease Associations	1.0	2.88009
Carcinoma	CTD Gene-Disease Associations	1.0	2.88009
Bleeding Ulcer	DisGeNET Gene-Disease Associations	1.0	null
CAR-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-1.29585
abnormal blood vessel morphology	MGI Mouse Phenotype Associations 2023	1.0	null
abnormal nerve conduction velocity	HPO Gene-Disease Associations	1.0	null
PMC5195898-NIHMS825571-supplement-3.xlsx-Sheet1-H1975_M1_vs_H1975_M1_CIC_reconstitution_Differential_gene_expression_CIC	Rummagene Transcription Factor Associations 2026	1.0	null
Blurred Vision, Ctcae	DisGeNET Gene-Phenotype Associations	1.0	null
mental	GeneRIF Biological Term Annotations	1.0	null
Glomerulopathy Assessment	DisGeNET Gene-Phenotype Associations	1.0	null
PMC6220063__F1	PFOCR Pathway Figure Associations 2024	1.0	null
Anorexia	DisGeNET Gene-Disease Associations	1.0	null
encephalomyopathy	GeneRIF Biological Term Annotations	1.0	null
Pancreatic Neoplasms	CTD Gene-Disease Associations	1.0	1.49356
Feeding Difficulties In Infancy	DisGeNET Gene-Phenotype Associations	1.0	null
hydroquinone_homo sapiens_gpl570_gse31641	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Conventional (Clear Cell) Renal Cell Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
PMC11073972-41375_2024_2232_MOESM2_ESM.xlsx-REL-14_CD7_CD1a-_L-IC_DEG-DEG_L2FC_1_0_FDR_0_05_REL	Rummagene Transcription Factor Associations 2026	1.0	null
points	GeneRIF Biological Term Annotations	1.0	null
nonsense	GeneRIF Biological Term Annotations	1.0	null
PMC4364530__F1	PFOCR Pathway Figure Associations 2024	1.0	null
hsa-miR-92b-3p	MiRTarBase microRNA Targets	1.0	null
PMC9399107-41467_2022_32627_MOESM6_ESM.xlsx-7_B-cell_subsets-gene_name_Bcell_C5_NR4A1_NR4A1	Rummagene Transcription Factor Associations 2026	1.0	null
abnormality of thyroid morphology	HPO Gene-Disease Associations	1.0	null
premature loss of teeth	HPO Gene-Disease Associations	1.0	null
PMC8859258__F2	PFOCR Pathway Figure Associations 2024	1.0	null
abnormality of the metencephalon	HPO Gene-Disease Associations	1.0	null
Ventricular Dysfunction, Left	CTD Gene-Disease Associations	1.0	1.07057
abnormal respiratory system morphology	HPO Gene-Disease Associations	1.0	null
Thyroid Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
generation of precursor metabolites and energy	GO Biological Process Annotations 2015	1.0	null
highly	GeneRIF Biological Term Annotations	1.0	null
optic disc pallor	HPO Gene-Disease Associations	1.0	null
PMC11426526-ppat.1012555.s014.xlsx-DEG_DC_C91-PL_LPS_vs_DC_Jurkat-DEG_MDDC_C91-PL_LPS_vs_MDDC_Jurkat_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
Mercury Poisoning	CTD Gene-Disease Associations	1.0	1.15661
abnormal pyramidal signs	HPO Gene-Disease Associations	1.0	null
electron transport chain	GO Biological Process Annotations 2015	1.0	null
Malformations Of Cortical Development	DisGeNET Gene-Disease Associations	1.0	null
Nausea	CTD Gene-Disease Associations	1.0	1.39785
cellular aromatic compound metabolic process	GO Biological Process Annotations 2015	1.0	null
doxorubicin_homo sapiens_gpl570_gse46493	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
abnormality of calcium homeostasis	HPO Gene-Disease Associations	1.0	null
Skeletal Muscle Atrophy	DisGeNET Gene-Phenotype Associations	1.0	null
Traditional Serrated Adenoma	DisGeNET Gene-Disease Associations	1.0	null
Premature Birth	CTD Gene-Disease Associations	1.0	1.01776
oxidoreductase activity	GO Molecular Function Annotations 2015	1.0	null
Renal Insufficiency	CTD Gene-Disease Associations	1.0	1.55971
HT-1080	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-1.45942
Quercetin and Nf kB AP 1 induced apoptosis	WikiPathways Pathways 2024	1.0	null
Hyperalgesia	CTD Gene-Disease Associations	1.0	1.12323
abnormality of skeletal maturation	HPO Gene-Disease Associations	1.0	null
edema	MPO Gene-Phenotype Associations	1.0	null
Carcinogenesis	DisGeNET Gene-Phenotype Associations	1.0	null
surfeit	GeneRIF Biological Term Annotations	1.0	null
abnormality of the pulmonary artery	HPO Gene-Disease Associations	1.0	null
moderate	GeneRIF Biological Term Annotations	1.0	null
Prenatal Injuries	CTD Gene-Disease Associations	1.0	1.72075
PMC12699144-CTM2-15-e70552-s001.xlsx-T_CD4_c03_ANXA2_FOXP3-Unnamed_0_FOXP3	Rummagene Transcription Factor Associations 2026	1.0	null
cognitive impairment	HPO Gene-Disease Associations	1.0	null
variety	GeneRIF Biological Term Annotations	1.0	null
abnormality of the head	HPO Gene-Disease Associations	1.0	null
changes	GeneRIF Biological Term Annotations	1.0	null
PMC3540890__F1	PFOCR Pathway Figure Associations 2024	1.0	null
PMC10592471-NIHMS1912771-supplement-2.xlsx-NR2F1-Ind-Upregulated_NR2F1	Rummagene Transcription Factor Associations 2026	1.0	null
abnormality of cardiovascular system physiology	HPO Gene-Disease Associations	1.0	null
ME-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	1.0	1.1678
abnormality of the integument	HPO Gene-Disease Associations	1.0	null
Epithelial Ovarian Cancer	DisGeNET Gene-Disease Associations	1.0	null
Aphasia	DisGeNET Gene-Disease Associations	1.0	null
PMC6977700-aging-12-102667-s004..xlsx-Stage1-The_identified_3126_dysregulated_LmiRM-CTs_in_stage_1_of_MI_1_day_of_MI_using_our_method_MITF	Rummagene Transcription Factor Associations 2026	1.0	null
PMC9271868__F2	PFOCR Pathway Figure Associations 2024	1.0	null
ptosis	HPO Gene-Disease Associations	1.0	null
Doxorubicin	CTD Gene-Chemical Interactions	1.0	null
goiter	HPO Gene-Disease Associations	1.0	null
seizures	HPO Gene-Disease Associations	1.0	null
cellular respiration	GO Biological Process Annotations 2015	1.0	null
Short Stature	DisGeNET Gene-Phenotype Associations	1.0	null
Orbital Separation Excessive	DisGeNET Gene-Phenotype Associations	1.0	null
PMC3360095__F1	PFOCR Pathway Figure Associations 2024	1.0	null
elevated pulmonary artery pressure	HPO Gene-Disease Associations	1.0	null
Disturbance Of Consciousness	DisGeNET Gene-Phenotype Associations	1.0	null
COLO 201	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	1.0	1.1678
Cyst	DisGeNET Gene-Disease Associations	1.0	null
organophosphate metabolic process	GO Biological Process Annotations 2015	1.0	null
Anterior Hypopituitarism	DisGeNET Gene-Disease Associations	1.0	null
carrying	GeneRIF Biological Term Annotations	1.0	null
Diabetes Mellitus	DisGeNET Gene-Disease Associations	1.0	null
prostate	GeneRIF Biological Term Annotations	1.0	null
PMC3371315-NIHMS350140-supplement-9.xls-MCF7-T47D-SK-453_Up_MCF7-T47D_x-Supplementary_Table_2_ER-positive_FOXA1_signature_Genes_increased_only_in_MCF7_and_T47D_cells_with_knockdown_of_FOXA1_FOXA1	Rummagene Transcription Factor Associations 2026	1.0	null
Cholestasis	CTD Gene-Disease Associations	1.0	1.18554
epidermal thickening	HPO Gene-Disease Associations	1.0	null
cisplatin_homo sapiens_gpl570_gse15372	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
abnormality of the cerebral ventricles	HPO Gene-Disease Associations	1.0	null
Electron Transport Chain(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
Muscle Weakness	DisGeNET Gene-Phenotype Associations	1.0	null
onset	HPO Gene-Disease Associations	1.0	null
KURAMOCHI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	1.0	1.1678
Malabsorption	DisGeNET Gene-Phenotype Associations	1.0	null
nitrogen compound metabolic process	GO Biological Process Annotations 2015	1.0	null
PMC5866379__F14	PFOCR Pathway Figure Associations 2024	1.0	null
Nitric Oxide	CTD Gene-Chemical Interactions	1.0	null
hsa-miR-193b-3p	MiRTarBase microRNA Targets	1.0	null
PMC3159301__F1	PFOCR Pathway Figure Associations 2024	1.0	null
coxi	GeneRIF Biological Term Annotations	1.0	null
hsa-miR-149-5p	MiRTarBase microRNA Targets	1.0	null
Inflammation	CTD Gene-Disease Associations	1.0	2.16048
Pulmonary Embolism	DisGeNET Gene-Disease Associations	1.0	null
integral component of membrane	GO Cellular Component Annotations 2015	1.0	null
NCI-H1437	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	1.0	1.1678
cellular_component	GO Cellular Component Annotations 2015	1.0	null
abnormality of skin pigmentation	HPO Gene-Disease Associations	1.0	null
visual field defect	HPO Gene-Disease Associations	1.0	null
Aneuploidy	HuGE Navigator Gene-Phenotype Associations	1.0	null
causing	GeneRIF Biological Term Annotations	1.0	null
Autism	DisGeNET Gene-Disease Associations	1.0	null
Primary Sjögren'S Syndrome	DisGeNET Gene-Disease Associations	1.0	null
SNU-668	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	1.0	1.1678
MDA-MB-231	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-1.96253
homoplasmic	GeneRIF Biological Term Annotations	1.0	null
PMC10663741-mmc4.xlsx-markers_table_FE_ELP_stage-gene_NR5A1	Rummagene Transcription Factor Associations 2026	1.0	null
Tuberous Sclerosis	DisGeNET Gene-Disease Associations	1.0	null
abnormality of the lung	HPO Gene-Disease Associations	1.0	null
mild	GeneRIF Biological Term Annotations	1.0	null
Myoglobinuria, Recurrent	DisGeNET Gene-Phenotype Associations	1.0	null
immune system phenotype	MPO Gene-Phenotype Associations	1.0	null
Nephritis	DisGeNET Gene-Disease Associations	1.0	null
promoting	GeneRIF Biological Term Annotations	1.0	null
all	HPO Gene-Disease Associations	1.0	null
Arthritis	DisGeNET Gene-Disease Associations	1.0	null
regulated	GeneRIF Biological Term Annotations	1.0	null
Renal Cell Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
PMC8615223__F1	PFOCR Pathway Figure Associations 2024	1.0	null
atp metabolic process	GO Biological Process Annotations 2015	1.0	null
Cortical Visual Impairment	DisGeNET Gene-Phenotype Associations	1.0	null
pioglitazone_rattus norvegicus_gpl341_liver_gds3850	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
PANC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-0.983029
large central visual field defect	HPO Gene-Disease Associations	1.0	null
heme-copper terminal oxidase activity	GO Molecular Function Annotations 2015	1.0	null
Dyslipidemias	CTD Gene-Disease Associations	1.0	1.21206
homeostasis/metabolism phenotype	MPO Gene-Phenotype Associations	1.0	null
Idiosyncratic drug effect_Hepatic Tissue_GSE2825	GEO Signatures of Differentially Expressed Genes for Diseases	-1.0	-2.39505
Immune Thrombocytopenic Purpura	DisGeNET Gene-Disease Associations	1.0	null
PMC3011108__F1	PFOCR Pathway Figure Associations 2024	1.0	null
purine-containing compound metabolic process	GO Biological Process Annotations 2015	1.0	null
PMC8101445-mbc-32-475-s003.xlsx-HEK_Tim29_KD-Gene_names_AR	Rummagene Transcription Factor Associations 2026	1.0	null
Abnormality Of Retinal Pigmentation	DisGeNET Gene-Phenotype Associations	1.0	null
HCC1576	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-0.983029
PMC7892797__F1	PFOCR Pathway Figure Associations 2024	1.0	null
abnormal blood vessel morphology	MPO Gene-Phenotype Associations	1.0	null
PMC7522985__F1	PFOCR Pathway Figure Associations 2024	1.0	null
Diabetes Mellitus	CTD Gene-Disease Associations	1.0	1.59755
abnormality of ion homeostasis	HPO Gene-Disease Associations	1.0	null
ichthyosis	HPO Gene-Disease Associations	1.0	null
acid	GeneRIF Biological Term Annotations	1.0	null
Polyps	DisGeNET Gene-Phenotype Associations	1.0	null
PMC10172325-41598_2023_34728_MOESM5_ESM.xlsx-KD_Upregulated-Unnamed_7_AR	Rummagene Transcription Factor Associations 2026	1.0	null
Learning Disorders	CTD Gene-Disease Associations	1.0	1.83681
Ophthalmoplegia	DisGeNET Gene-Phenotype Associations	1.0	null
abnormality of metabolism/homeostasis	HPO Gene-Disease Associations	1.0	null
hydrocortisone_homo sapiens_gpl570_normal scar_gds3071	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
PMC3090136__F1	PFOCR Pathway Figure Associations 2024	1.0	null
nucleoside metabolic process	GO Biological Process Annotations 2015	1.0	null
COLO 849	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	1.0	1.1678
cardiac arrest	HPO Gene-Disease Associations	1.0	null
Tachycardia	CTD Gene-Disease Associations	1.0	1.21402
Disease Models, Animal	CTD Gene-Disease Associations	1.0	1.74441
Weight Gain	CTD Gene-Disease Associations	1.0	1.32074
abnormality of forebrain morphology	HPO Gene-Disease Associations	1.0	null
HCC1599	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-1.77749
Acute Chest Syndrome	DisGeNET Gene-Disease Associations	1.0	null
abnormal myocardial fiber morphology	MPO Gene-Phenotype Associations	1.0	null
abnormal fluid regulation	MPO Gene-Phenotype Associations	1.0	null
PMC5359278__F1	PFOCR Pathway Figure Associations 2024	1.0	null
PMC9181267-mmc5.xls-FILTERED_OLD-INFvsYOUNG-INF_LUN-hsapiens_homolog_associated_gene_name_TOPORS	Rummagene Transcription Factor Associations 2026	1.0	null
aluminum lactate	CTD Gene-Chemical Interactions	1.0	null
Ophthalmoparesis	DisGeNET Gene-Phenotype Associations	1.0	null
memory impairment	HPO Gene-Disease Associations	1.0	null
abnormal heart left ventricle morphology	MGI Mouse Phenotype Associations 2023	1.0	null
Variable Expressivity	DisGeNET Gene-Phenotype Associations	1.0	null
Brain Diseases	CTD Gene-Disease Associations	1.0	1.6857
Squamous Cell Carcinoma Of The Head And Neck	DisGeNET Gene-Disease Associations	1.0	null
abnormality of the kidney	HPO Gene-Disease Associations	1.0	null
PMC10803041-elife-86204-supp2.xlsx-scRNA-seq_Snc-KD_in_HT-gene_name_AR	Rummagene Transcription Factor Associations 2026	1.0	null
Optic Atrophy	DisGeNET Gene-Disease Associations	1.0	null
inorganic ion transmembrane transport	GO Biological Process Annotations 2015	1.0	null
hypercalciuria	HPO Gene-Disease Associations	1.0	null
PMC6482252__F2	PFOCR Pathway Figure Associations 2024	1.0	null
abnormality of thyroid physiology	HPO Gene-Disease Associations	1.0	null
autistic behavior	HPO Gene-Disease Associations	1.0	null
Lobar Pneumonia	DisGeNET Gene-Disease Associations	1.0	null
MKN-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-1.33906
congestive heart failure	HPO Gene-Disease Associations	1.0	null
hsa-let-7a-5p	MiRTarBase microRNA Targets	1.0	null
Seizures	CTD Gene-Disease Associations	1.0	1.46858
Spindle Cell Hemangioma	DisGeNET Gene-Disease Associations	1.0	null
deafness	GeneRIF Biological Term Annotations	1.0	null
Diabetes Mellitus, Type 2	HuGE Navigator Gene-Phenotype Associations	1.0	null
neoplasm	HPO Gene-Disease Associations	1.0	null
prostate cancer	GAD Gene-Disease Associations	1.0	null
PMC5599481__F4	PFOCR Pathway Figure Associations 2024	1.0	null
PMC6345883-41598_2018_37397_MOESM10_ESM.xlsx-AR_D0_VS_D7_WO_B29__TRANS-Gene_Name_AR	Rummagene Transcription Factor Associations 2026	1.0	null
Immune System Diseases	CTD Gene-Disease Associations	1.0	1.29688
PMC6422901__F2	PFOCR Pathway Figure Associations 2024	1.0	null
PMC7657662__F5	PFOCR Pathway Figure Associations 2024	1.0	null
abnormality of the systemic arterial tree	HPO Gene-Disease Associations	1.0	null
PMC10679653-mmc2.xlsx-ISL1_KO_Markers_E-Unnamed_0_ISL1	Rummagene Transcription Factor Associations 2026	1.0	null
african	GeneRIF Biological Term Annotations	1.0	null
PMC4588138__F1	PFOCR Pathway Figure Associations 2024	1.0	null
Diverticulosis	DisGeNET Gene-Disease Associations	1.0	null
Cerebral Infarction	CTD Gene-Disease Associations	1.0	1.14302
PMC6657254__F1	PFOCR Pathway Figure Associations 2024	1.0	null
mitochondrial respiratory chain complex iv	GO Cellular Component Annotations 2015	1.0	null
dominated	GeneRIF Biological Term Annotations	1.0	null
emg abnormality	HPO Gene-Disease Associations	1.0	null
cation transport	GO Biological Process Annotations 2015	1.0	null
Craniofacial Abnormalities	CTD Gene-Disease Associations	1.0	1.22884
PMC12824661-BLOOD_BLD-2024-027020-mmc6.xls-Table_S14-HES4_Up_HES4	Rummagene Transcription Factor Associations 2026	1.0	null
mode of inheritance	HPO Gene-Disease Associations	1.0	null
NCI-H1838	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	1.0	1.1678
Kidney Failure	DisGeNET Gene-Disease Associations	1.0	null
canceer	GeneRIF Biological Term Annotations	1.0	null
abnormality of the retina	HPO Gene-Disease Associations	1.0	null
Increased Serum Lactate	DisGeNET Gene-Phenotype Associations	1.0	null
abnormal myocardial fiber physiology	MPO Gene-Phenotype Associations	1.0	null
Multiple Myeloma	DisGeNET Gene-Disease Associations	1.0	null
Neurotoxicity Syndromes	CTD Gene-Disease Associations	1.0	1.4202
PMC10592471-NIHMS1912771-supplement-4.xlsx-D-HEP3_UP_AA_UP-AA_UP_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
Malignant Neoplasm	DisGeNET Gene-Disease Associations	1.0	null
PMC11385078-jciinsight-9-172336-s272.xlsx-1DEseq2_Report_AA_BL_vs_EA_BL-Unnamed_1_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
Insulin Resistance	CTD Gene-Disease Associations	1.0	1.28058
PMC6789187__F2	PFOCR Pathway Figure Associations 2024	1.0	null
men	GeneRIF Biological Term Annotations	1.0	null
percentage	GeneRIF Biological Term Annotations	1.0	null
paclitaxel_homo sapiens_gpl570_gse19136	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
abdominal pain	HPO Gene-Disease Associations	1.0	null
Polyp Of Large Intestine	DisGeNET Gene-Disease Associations	1.0	null
Infection By Trichuris Trichiura	DisGeNET Gene-Disease Associations	1.0	null
Bipolar Disorder	DisGeNET Gene-Disease Associations	1.0	null
abnormal hair quantity	HPO Gene-Disease Associations	1.0	null
PMC9387164-Table_2.XLSX-Sheet1-CLOCK_CLOCK	Rummagene Transcription Factor Associations 2026	1.0	null
blood	GeneRIF Biological Term Annotations	1.0	null
organic cyclic compound binding	GO Molecular Function Annotations 2015	1.0	null
deletion	GeneRIF Biological Term Annotations	1.0	null
Cytochrome c oxidase, subunit I domain	InterPro Predicted Protein Domain Annotations	1.0	null
Ragged-Red Muscle Fibers	DisGeNET Gene-Phenotype Associations	1.0	null
functional abnormality of the gastrointestinal tract	HPO Gene-Disease Associations	1.0	null
trx2	GeneRIF Biological Term Annotations	1.0	null
PMC3232027__F2	PFOCR Pathway Figure Associations 2024	1.0	null
respiratory activity following radiotherapy	GAD Gene-Disease Associations	1.0	null
CDK9_druginhibition_183_GSE48258	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	-1.0	-0.252022
PMC10591418-12711_2023_849_MOESM11_ESM.xls-AA_3W_vs_LS_3W-gene_name_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
purine nucleoside monophosphate metabolic process	GO Biological Process Annotations 2015	1.0	null
GTL-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-1.64335
PMC9319223__F2	PFOCR Pathway Figure Associations 2024	1.0	null
alterations	GeneRIF Biological Term Annotations	1.0	null
Cerebral Palsy	DisGeNET Gene-Disease Associations	1.0	null
abnormality of pancreas physiology	HPO Gene-Disease Associations	1.0	null
neoplasm by anatomical site	HPO Gene-Disease Associations	1.0	null
ventriculomegaly	HPO Gene-Disease Associations	1.0	null
PMC2697682__F1	PFOCR Pathway Figure Associations 2024	1.0	null
hydrogen ion transmembrane transport	GO Biological Process Annotations 2015	1.0	null
abnormality of muscle size	HPO Gene-Disease Associations	1.0	null
substrate-specific transporter activity	GO Molecular Function Annotations 2015	1.0	null
Squamous Cell Carcinoma Of Esophagus	DisGeNET Gene-Disease Associations	1.0	null
abnormality of adipose tissue	HPO Gene-Disease Associations	1.0	null
JJN-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	1.0	1.1678
phosphorus metabolic process	GO Biological Process Annotations 2015	1.0	null
abnormality of the renal tubule	HPO Gene-Disease Associations	1.0	null
Sideroblastic Anemia	DisGeNET Gene-Disease Associations	1.0	null
Mitochondrial complex IV assembly	WikiPathways Pathways 2024	1.0	null
heterocycle metabolic process	GO Biological Process Annotations 2015	1.0	null
abnormal renal morphology	HPO Gene-Disease Associations	1.0	null
abnormality of skeletal physiology	HPO Gene-Disease Associations	1.0	null
PMC7594023__F1	PFOCR Pathway Figure Associations 2024	1.0	null
PMC9259482-41385_2022_495_MOESM1_ESM.xlsx-S14_neutrophils-Supplemental_Table_13_Neutrophil_cluster1_LPS_vs_LPS_il-1RA_aTNF_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
Fatty Liver	CTD Gene-Disease Associations	1.0	2.04371
Respiratory Insufficiency	DisGeNET Gene-Phenotype Associations	1.0	null
aplasia/hypoplasia of the cerebellum	HPO Gene-Disease Associations	1.0	null
Alkalemia	DisGeNET Gene-Disease Associations	1.0	null
abnormality of divalent inorganic cation homeostasis	HPO Gene-Disease Associations	1.0	null
PMC6103261__F1	PFOCR Pathway Figure Associations 2024	1.0	null
PMC9618568-41467_2022_34255_MOESM6_ESM.xlsx-TAL2-Unnamed_0_TAL2	Rummagene Transcription Factor Associations 2026	1.0	null
Bursitis	DisGeNET Gene-Disease Associations	1.0	null
arrhythmia	HPO Gene-Disease Associations	1.0	null
Anorexia	CTD Gene-Disease Associations	1.0	1.36047
patient	GeneRIF Biological Term Annotations	1.0	null
abnormality of globe location	HPO Gene-Disease Associations	1.0	null
Taenia Saginata Infection	DisGeNET Gene-Disease Associations	1.0	null
PMC9181267-mmc3.xls-FILTERED_OLD-INFvsYOUNG-INF_LUN-hsapiens_homolog_associated_gene_name_TOPORS	Rummagene Transcription Factor Associations 2026	1.0	null
Prostatic Diseases	CTD Gene-Disease Associations	1.0	1.04051
syndrome	GeneRIF Biological Term Annotations	1.0	null
abnormality of the pinna	HPO Gene-Disease Associations	1.0	null
Atherothrombosis	DisGeNET Gene-Disease Associations	1.0	null
TRIM33_KD_GDS4071_449_human_HMEC-TR mammary epithelial cell line	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
Abnormal Mitral Valve Physiology	DisGeNET Gene-Phenotype Associations	1.0	null
Lichen Sclerosus Et Atrophicus	DisGeNET Gene-Disease Associations	1.0	null
Infertility, Male	CTD Gene-Disease Associations	1.0	1.5012
Chronic Respiratory Failure	DisGeNET Gene-Disease Associations	1.0	null
hsa-miR-766-3p	MiRTarBase microRNA Targets	1.0	null
spontaneous hematomas	HPO Gene-Disease Associations	1.0	null
Acute Kidney Injury	CTD Gene-Disease Associations	1.0	1.91334
abnormality of central nervous system electrophysiology	HPO Gene-Disease Associations	1.0	null
abnormality of blood and blood-forming tissues	HPO Gene-Disease Associations	1.0	null
abnormality of the anterior segment of the eye	HPO Gene-Disease Associations	1.0	null
PMC3360162__F4	PFOCR Pathway Figure Associations 2024	1.0	null
Cataract	CTD Gene-Disease Associations	1.0	1.17067
region	GeneRIF Biological Term Annotations	1.0	null
corresponding	GeneRIF Biological Term Annotations	1.0	null
single-organism transport	GO Biological Process Annotations 2015	1.0	null
abnormal heart morphology	MGI Mouse Phenotype Associations 2023	1.0	null
PMC6114234__F1	PFOCR Pathway Figure Associations 2024	1.0	null
Weight Loss	CTD Gene-Disease Associations	1.0	2.307
PMC12699144-CTM2-15-e70552-s001.xlsx-T_CD4_c02_FOS-Unnamed_0_FOS	Rummagene Transcription Factor Associations 2026	1.0	null
Nyctalopia	DisGeNET Gene-Disease Associations	1.0	null
mtdna	GeneRIF Biological Term Annotations	1.0	null
studied	GeneRIF Biological Term Annotations	1.0	null
PMC10830421-41589_2023_1452_MOESM5_ESM.xlsx-HEK293T_MAX-Tg_tissues-Unnamed_0_MAX	Rummagene Transcription Factor Associations 2026	1.0	null
Fatigue	CTD Gene-Disease Associations	1.0	1.33938
Delayed Bone Age	DisGeNET Gene-Phenotype Associations	1.0	null
hydrocortisone_homo sapiens_keloid scar_gds3071	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Myocardial Infarction_Myocardial tissue_GSE4105	GEO Signatures of Differentially Expressed Genes for Diseases	-1.0	-1.61138
ovarian cancer	GAD Gene-Disease Associations	1.0	null
PMC4427840__F4	PFOCR Pathway Figure Associations 2024	1.0	null
PMC2666541__F1	PFOCR Pathway Figure Associations 2024	1.0	null
Psychotic Episodes	DisGeNET Gene-Disease Associations	1.0	null
cellular metabolic process	GO Biological Process Annotations 2015	1.0	null
susceptibility	GeneRIF Biological Term Annotations	1.0	null
olanzapine_rattus norvegicus_gds2608	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
mtcyb	GeneRIF Biological Term Annotations	1.0	null
PMC8958338__F10	PFOCR Pathway Figure Associations 2024	1.0	null
Tumor Cell Invasion	DisGeNET Gene-Phenotype Associations	1.0	null
abnormal muscle fiber morphology	MPO Gene-Phenotype Associations	1.0	null
Cytochrome C Oxidase I Deficiency	DisGeNET Gene-Disease Associations	1.0	null
mitochondrial inner membrane	GO Cellular Component Annotations 2015	1.0	null
Hemiparesis	DisGeNET Gene-Phenotype Associations	1.0	null
abnormal glucose homeostasis	HPO Gene-Disease Associations	1.0	null
PMC8709003__F3	PFOCR Pathway Figure Associations 2024	1.0	null
abnormal cardiovascular system morphology	MPO Gene-Phenotype Associations	1.0	null
Heart Block	DisGeNET Gene-Disease Associations	1.0	null
PMC11991920-41556_2025_1639_MOESM3_ESM.xlsx-DEGs_MI_vs_Ctrl_HSCs_padj0_1-gene_MITF	Rummagene Transcription Factor Associations 2026	1.0	null
candesartan_rattus norvegicus_gpl341_gse4206	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
amoxicillin_rattus norvegicus_gpl341_colon_gds1273	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
ion transmembrane transport	GO Biological Process Annotations 2015	1.0	null
Mitochondrial Respiratory Chain Defects	DisGeNET Gene-Phenotype Associations	1.0	null
Hemianopsia	DisGeNET Gene-Disease Associations	1.0	null
PMC9181267-mmc3.xls-FILTERED_OLD-INFvsYOUNG-INF_LUN-orthofinder_human_gene_names_TOPORS	Rummagene Transcription Factor Associations 2026	1.0	null
HMY-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	1.0	1.1678
muscle	GeneRIF Biological Term Annotations	1.0	null
Carcinoma, Basal Cell	DisGeNET Gene-Disease Associations	1.0	null
Cerebral Ischemia	DisGeNET Gene-Disease Associations	1.0	null
Blurred Vision	DisGeNET Gene-Phenotype Associations	1.0	null
abnormal bleeding	HPO Gene-Disease Associations	1.0	null
abnormality of the nephron	HPO Gene-Disease Associations	1.0	null
Muscular Diseases	CTD Gene-Disease Associations	1.0	1.26545
abnormality of movement	HPO Gene-Disease Associations	1.0	null
abnormal cardiac muscle tissue morphology	MPO Gene-Phenotype Associations	1.0	null
abnormal heart ventricle morphology	MPO Gene-Phenotype Associations	1.0	null
Uridine	CTD Gene-Chemical Interactions	1.0	null
PMC4402390__F6	PFOCR Pathway Figure Associations 2024	1.0	null
PMC3047110__F6	PFOCR Pathway Figure Associations 2024	1.0	null
Lung Diseases	CTD Gene-Disease Associations	1.0	1.19607
PMC9456412__F2	PFOCR Pathway Figure Associations 2024	1.0	null
presence	GeneRIF Biological Term Annotations	1.0	null
primary metabolic process	GO Biological Process Annotations 2015	1.0	null
more	GeneRIF Biological Term Annotations	1.0	null
Developmental Regression	DisGeNET Gene-Disease Associations	1.0	null
Steatohepatitis	DisGeNET Gene-Disease Associations	1.0	null
malformation of the heart and great vessels	HPO Gene-Disease Associations	1.0	null
abnormality of the outer ear	HPO Gene-Disease Associations	1.0	null
Nasal Polyps	DisGeNET Gene-Disease Associations	1.0	null
heart inflammation	MGI Mouse Phenotype Associations 2023	1.0	null
abnormality of the intestine	HPO Gene-Disease Associations	1.0	null
Flea Infestation	DisGeNET Gene-Disease Associations	1.0	null
SK-OV-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-1.07517
PMC7999520__F8	PFOCR Pathway Figure Associations 2024	1.0	null
intrinsic component of membrane	GO Cellular Component Annotations 2015	1.0	null
heme binding	GO Molecular Function Annotations 2015	1.0	null
PMC2727910__F1	PFOCR Pathway Figure Associations 2024	1.0	null
PMC3982925__F1	PFOCR Pathway Figure Associations 2024	1.0	null
Epilepsy	DisGeNET Gene-Disease Associations	1.0	null
PMC8263695__F1	PFOCR Pathway Figure Associations 2024	1.0	null
lipomatous tumor	HPO Gene-Disease Associations	1.0	null
PMC7936035__F7	PFOCR Pathway Figure Associations 2024	1.0	null
parkinson's disease	GAD Gene-Disease Associations	1.0	null
PMC6632210__F7	PFOCR Pathway Figure Associations 2024	1.0	null
KPL-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-0.936836
Abdominal Pain	DisGeNET Gene-Phenotype Associations	1.0	null
PMC10792109-NIHMS1929238-supplement-Supplemental_Table_6.xlsx-intersection_genes_up-FOXJ1_FOXJ1	Rummagene Transcription Factor Associations 2026	1.0	null
G28T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-0.845162
Pancreatitis	DisGeNET Gene-Disease Associations	1.0	null
Liver Neoplasms, Experimental	CTD Gene-Disease Associations	1.0	1.69867
Seizures	DisGeNET Gene-Phenotype Associations	1.0	null
estradiol_homo sapiens_gpl570_gds3217	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
growth/size/body phenotype	MPO Gene-Phenotype Associations	1.0	null
Neurocysticercosis	DisGeNET Gene-Disease Associations	1.0	null
intolerance	GeneRIF Biological Term Annotations	1.0	null
amoxicillin_rattus norvegicus_gpl341_distal small intestine_gds1273	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
continua	GeneRIF Biological Term Annotations	1.0	null
nucleotide metabolic process	GO Biological Process Annotations 2015	1.0	null
reduced tendon reflexes	HPO Gene-Disease Associations	1.0	null
organonitrogen compound metabolic process	GO Biological Process Annotations 2015	1.0	null
Rotenone	CTD Gene-Chemical Interactions	1.0	null
abnormality of joint mobility	HPO Gene-Disease Associations	1.0	null
Abnormality Of Mitochondrial Metabolism	DisGeNET Gene-Phenotype Associations	1.0	null
PMC2699853__F1	PFOCR Pathway Figure Associations 2024	1.0	null
Nausea And Vomiting	DisGeNET Gene-Phenotype Associations	1.0	null
Myocardial Infarction	DisGeNET Gene-Disease Associations	1.0	null
PMC5105076__F8	PFOCR Pathway Figure Associations 2024	1.0	null
abnormality of the glomerulus	HPO Gene-Disease Associations	1.0	null
platelets	GeneRIF Biological Term Annotations	1.0	null
CA46	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	1.0	1.1678
Polycystic Ovary Syndrome_Skeletal muscle_GSE6798	GEO Signatures of Differentially Expressed Genes for Diseases	-1.0	-1.52077
PMC3355930__F1	PFOCR Pathway Figure Associations 2024	1.0	null
PMC12586484-41598_2025_22484_MOESM2_ESM.xlsx-Supplementary_Table_1-Supplementary_Table_1_DEGs_in_ATOH8-depleted_EVT_ATOH8	Rummagene Transcription Factor Associations 2026	1.0	null
amoxicillin_rattus norvegicus_gpl341_gse2354	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
Edema	CTD Gene-Disease Associations	1.0	1.95843
Proteinuria	CTD Gene-Disease Associations	1.0	1.30238
Hypertrophy	CTD Gene-Disease Associations	1.0	2.88009
Polyuria	CTD Gene-Disease Associations	1.0	1.19279
mtco1	GeneRIF Biological Term Annotations	1.0	null
Enterobiasis	DisGeNET Gene-Disease Associations	1.0	null
Nicotine addiction_Ganglioneuroblastoma_GSE11208	GEO Signatures of Differentially Expressed Genes for Diseases	1.0	1.36155
Electromyogram Abnormal	DisGeNET Gene-Phenotype Associations	1.0	null
PMC4543607__F1	PFOCR Pathway Figure Associations 2024	1.0	null
hsa-miR-361-5p	MiRTarBase microRNA Targets	1.0	null
Dementia	DisGeNET Gene-Disease Associations	1.0	null
myopathy	MPO Gene-Phenotype Associations	1.0	null
Hypoparathyroidism	DisGeNET Gene-Disease Associations	1.0	null
Left Ventricular Hypertrophy	DisGeNET Gene-Disease Associations	1.0	null
PMC9231311__F4	PFOCR Pathway Figure Associations 2024	1.0	null
Liver Cirrhosis, Experimental	CTD Gene-Disease Associations	1.0	1.48454
hsa-miR-760	MiRTarBase microRNA Targets	1.0	null
abnormality of peripheral nerves	HPO Gene-Disease Associations	1.0	null
carbohydrate derivative metabolic process	GO Biological Process Annotations 2015	1.0	null
abnormal homeostasis	MPO Gene-Phenotype Associations	1.0	null
PMC9181267-mmc3.xls-FILTERED_OLD-INFvsYOUNG-INF_LUN-GSEA_name_TOPORS	Rummagene Transcription Factor Associations 2026	1.0	null
PMC7716495__F3	PFOCR Pathway Figure Associations 2024	1.0	null
hsa-miR-708-5p	MiRTarBase microRNA Targets	1.0	null
exercise	GeneRIF Biological Term Annotations	1.0	null
ribonucleoside monophosphate metabolic process	GO Biological Process Annotations 2015	1.0	null
cognitive ability	GAD Gene-Disease Associations	1.0	null
Thyroid Neoplasm	DisGeNET Gene-Disease Associations	1.0	null
methylprednisolone_rattus norvegicus_gpl85_gds965	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
decreased body weight	MGI Mouse Phenotype Associations 2023	1.0	null
Creatine Phosphokinase Serum Increased	DisGeNET Gene-Phenotype Associations	1.0	null
PMC11399095-44161_2024_532_MOESM7_ESM.xlsx-Sheet1-Supplementary_Table_6_DEG_of_hyperexpanded_clones_in_EAT_vs_AA_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
abnormal axial skeleton morphology	HPO Gene-Disease Associations	1.0	null
Experimental Organism Basal Cell Carcinoma	DisGeNET Gene-Phenotype Associations	1.0	null
cerebral ischemia	HPO Gene-Disease Associations	1.0	null
ribonucleotide metabolic process	GO Biological Process Annotations 2015	1.0	null
PMC12822963-pone.0339296.s005.xlsx-Sheet1-HIF1A_HIF1A	Rummagene Transcription Factor Associations 2026	1.0	null
optic atrophy	HPO Gene-Disease Associations	1.0	null
PMC8882905__F4	PFOCR Pathway Figure Associations 2024	1.0	null
Atherosclerosis	CTD Gene-Disease Associations	1.0	1.87143
Spontaneous Pneumothorax	DisGeNET Gene-Disease Associations	1.0	null
Short Stature, Ctcae	DisGeNET Gene-Phenotype Associations	1.0	null
hypertrophic cardiomyopathy	HPO Gene-Disease Associations	1.0	null
Disulfiram	CTD Gene-Chemical Interactions	1.0	null
SW 1463	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-0.936836
generalized abnormality of skin	HPO Gene-Disease Associations	1.0	null
Nodule	DisGeNET Gene-Phenotype Associations	1.0	null
PMC7543703__F2	PFOCR Pathway Figure Associations 2024	1.0	null
Alcohol poisoning_Pancreas_GSE3311	GEO Signatures of Differentially Expressed Genes for Diseases	1.0	0.850712
abnormality of the retinal pigment epithelium	HPO Gene-Disease Associations	1.0	null
A3/KAW	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-0.845162
carious teeth	HPO Gene-Disease Associations	1.0	null
abnormal oxidative phosphorylation	MPO Gene-Phenotype Associations	1.0	null
Ventricular Preexcitation	DisGeNET Gene-Disease Associations	1.0	null
Hypothyroidism	DisGeNET Gene-Disease Associations	1.0	null
PMC9199543__F3	PFOCR Pathway Figure Associations 2024	1.0	null
methylprednisolone_rattus norvegicus_gpl341_gds964	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
CHAGO-K-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	1.0	1.1678
abnormality of the face	HPO Gene-Disease Associations	1.0	null
cisplatin_homo sapiens_gpl570_gse23553	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Colonic Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
PMC4389579__F1	PFOCR Pathway Figure Associations 2024	1.0	null
PMC9385264-NIHMS1828071-supplement-8.xlsx-AR-gene_symbol_AR	Rummagene Transcription Factor Associations 2026	1.0	null
Copper	CTD Gene-Chemical Interactions	1.0	null
Puromycin Aminonucleoside	CTD Gene-Chemical Interactions	1.0	null
Copper Sulfate	CTD Gene-Chemical Interactions	1.0	null
Poisoning	CTD Gene-Disease Associations	1.0	2.16141
G44	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-0.889957
cerebral cortical atrophy	HPO Gene-Disease Associations	1.0	null
deficiency	GeneRIF Biological Term Annotations	1.0	null
aging	GeneRIF Biological Term Annotations	1.0	null
hsa-miR-615-3p	MiRTarBase microRNA Targets	1.0	null
Toxoplasmosis	DisGeNET Gene-Disease Associations	1.0	null
Degenerative Polyarthritis	DisGeNET Gene-Disease Associations	1.0	null
Pulmonary Arterial Hypertension	DisGeNET Gene-Disease Associations	1.0	null
abnormality of the urinary system physiology	HPO Gene-Disease Associations	1.0	null
PMC8410861-41467_2021_25544_MOESM32_ESM.xlsx-MCR-MCR_cells_-_DGE_iGCA_testis_vs_adult_testis_from_GSE112013_and_GSE124263_NR3C2	Rummagene Transcription Factor Associations 2026	1.0	null
intestinal obstruction	HPO Gene-Disease Associations	1.0	null
reactive	GeneRIF Biological Term Annotations	1.0	null
cisplatin_homo sapiens_gds3910	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Thrombocytopenia	CTD Gene-Disease Associations	1.0	1.03827
abnormality of temperature regulation	HPO Gene-Disease Associations	1.0	null
Renal Insufficiency	DisGeNET Gene-Disease Associations	1.0	null
Glycogen Storage Disease	DisGeNET Gene-Disease Associations	1.0	null
Mask-Like Facies	DisGeNET Gene-Phenotype Associations	1.0	null
Dysarthria	DisGeNET Gene-Disease Associations	1.0	null
Decreased Nerve Conduction Velocity	DisGeNET Gene-Phenotype Associations	1.0	null
Paresthesia	DisGeNET Gene-Phenotype Associations	1.0	null
Hypertension	CTD Gene-Disease Associations	1.0	1.97008
rosiglitazone_rattus norvegicus_gpl341_adipose tissue_gds3850	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Preexcitation Syndrome	DisGeNET Gene-Disease Associations	1.0	null
ERBB2_overexpression_230_GSE14990	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	-1.0	-1.18505
Cadmium	CTD Gene-Chemical Interactions	1.0	null
Esophagitis	DisGeNET Gene-Disease Associations	1.0	null
OV56	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-1.41942
subunit	GeneRIF Biological Term Annotations	1.0	null
Lupus Erythematosus	DisGeNET Gene-Disease Associations	1.0	null
purine ribonucleoside metabolic process	GO Biological Process Annotations 2015	1.0	null
PMC10592471-NIHMS1912771-supplement-4.xlsx-D-HEp3_UP_NR2F1_ind_UP-NR2F1_Ind_UP_NR2F1	Rummagene Transcription Factor Associations 2026	1.0	null
abnormality of adrenal physiology	HPO Gene-Disease Associations	1.0	null
HCC1937	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-0.845162
Mammary Neoplasms	DisGeNET Gene-Phenotype Associations	1.0	null
Colorectal Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
glomerulopathy	HPO Gene-Disease Associations	1.0	null
Abnormal Visual Evoked Potential	DisGeNET Gene-Phenotype Associations	1.0	null
abnormality of the optic nerve	HPO Gene-Disease Associations	1.0	null
olanzapine_rattus norvegicus_gpl1355_gse2547	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
abnormality of the cerebellum	HPO Gene-Disease Associations	1.0	null
comprising	GeneRIF Biological Term Annotations	1.0	null
abnormal body weight	MPO Gene-Phenotype Associations	1.0	null
Stomach Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
Hyperemia	DisGeNET Gene-Disease Associations	1.0	null
organelle membrane	GO Cellular Component Annotations 2015	1.0	null
abnormality of muscle morphology	HPO Gene-Disease Associations	1.0	null
PMC10957658__F1	PFOCR Pathway Figure Associations 2024	1.0	null
Dental Caries	DisGeNET Gene-Disease Associations	1.0	null
Brain Ischemia	CTD Gene-Disease Associations	1.0	1.04501
energy derivation by oxidation of organic compounds	GO Biological Process Annotations 2015	1.0	null
Neurobehavioral Manifestations	CTD Gene-Disease Associations	1.0	1.32132
Static Tremor	DisGeNET Gene-Phenotype Associations	1.0	null
Tumor Progression	DisGeNET Gene-Phenotype Associations	1.0	null
PMC8151284__SF1	PFOCR Pathway Figure Associations 2024	1.0	null
abnormal eye physiology	HPO Gene-Disease Associations	1.0	null
G140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-0.983029
abnormality of the eye	HPO Gene-Disease Associations	1.0	null
abnormalities of the peripheral arteries	HPO Gene-Disease Associations	1.0	null
PMC12699144-CTM2-15-e70552-s001.xlsx-T_CD4_c01_LEF1-Unnamed_0_LEF1	Rummagene Transcription Factor Associations 2026	1.0	null
phosphate-containing compound metabolic process	GO Biological Process Annotations 2015	1.0	null
behavioral abnormality	HPO Gene-Disease Associations	1.0	null
PMC7493015__F3	PFOCR Pathway Figure Associations 2024	1.0	null
Meningioma, Benign, No Icd-O Subtype	DisGeNET Gene-Disease Associations	1.0	null
Group B Streptococcal Infection	DisGeNET Gene-Disease Associations	1.0	null
Hymenolepiasis	DisGeNET Gene-Disease Associations	1.0	null
Neural Tube Defects	CTD Gene-Disease Associations	1.0	1.17563
cation transmembrane transporter activity	GO Molecular Function Annotations 2015	1.0	null
SK-MEL-24	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-0.936836
Dysmorphic Features	DisGeNET Gene-Disease Associations	1.0	null
proteinuria	HPO Gene-Disease Associations	1.0	null
PMC3865857__F1	PFOCR Pathway Figure Associations 2024	1.0	null
Secondary Malignant Neoplasm Of Liver	DisGeNET Gene-Disease Associations	1.0	null
PMC8226943__F2	PFOCR Pathway Figure Associations 2024	1.0	null
abnormal mitochondrial physiology	MPO Gene-Phenotype Associations	1.0	null
PMC11814291-41698_2025_830_MOESM1_ESM.pdf-3-ASCL1_ASCL1	Rummagene Transcription Factor Associations 2026	1.0	null
Synovitis	DisGeNET Gene-Disease Associations	1.0	null
PMC9170821-JCMM-26-3183-s001.xlsx-Oligo_DAPI_ERG_VaDadj_vs_NC-Gene_ERG	Rummagene Transcription Factor Associations 2026	1.0	null
Abdominal Pain	CTD Gene-Disease Associations	1.0	1.3759
purine nucleoside triphosphate metabolic process	GO Biological Process Annotations 2015	1.0	null
diarylpropionitrile	CTD Gene-Chemical Interactions	1.0	null
myocardial fiber degeneration	MPO Gene-Phenotype Associations	1.0	null
Familial Multiple Trichoepitheliomata	DisGeNET Gene-Disease Associations	1.0	null
cellular phenotype	MPO Gene-Phenotype Associations	1.0	null
Pediculus Capitis Infestation	DisGeNET Gene-Disease Associations	1.0	null
cardiovascular system phenotype	MPO Gene-Phenotype Associations	1.0	null
isoflurane_rattus norvegicus_gpl341_control_gds2037	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Gastrointestinal Diseases	HuGE Navigator Gene-Phenotype Associations	1.0	null
single-organism localization	GO Biological Process Annotations 2015	1.0	null
purine nucleotide metabolic process	GO Biological Process Annotations 2015	1.0	null
PMC9266441__F2	PFOCR Pathway Figure Associations 2024	1.0	null
PMC6483058__F4	PFOCR Pathway Figure Associations 2024	1.0	null
Ataxia	HuGE Navigator Gene-Phenotype Associations	1.0	null
residues	GeneRIF Biological Term Annotations	1.0	null
Central Visual Impairment	DisGeNET Gene-Disease Associations	1.0	null
cerebral calcification	HPO Gene-Disease Associations	1.0	null
eeg abnormality	HPO Gene-Disease Associations	1.0	null
Infection By Strongyloides Stercoralis	DisGeNET Gene-Disease Associations	1.0	null
type ii diabetes mellitus	HPO Gene-Disease Associations	1.0	null
Medulary Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
Chorioamnionitis	DisGeNET Gene-Phenotype Associations	1.0	null
Mitochondrial Myopathies	CTD Gene-Disease Associations	1.0	1.17926
PMC8995879-Table_1.xlsx-exome_variants_MAF_0_01-Gencode_34_hugoSymbol_MAF	Rummagene Transcription Factor Associations 2026	1.0	null
PMC4772904__F1	PFOCR Pathway Figure Associations 2024	1.0	null
atrophy/degeneration affecting the cerebrum	HPO Gene-Disease Associations	1.0	null
PMC9001660-41467_2022_29173_MOESM5_ESM.xlsx-Fig_2g_STAT3_DEGs-gene_STAT3	Rummagene Transcription Factor Associations 2026	1.0	null
Ataxia	DisGeNET Gene-Phenotype Associations	1.0	null
PMC7616765-EMS198548-supplement-Data_S2.xlsx-3_DEG_2D_and_3D-D9_Up_in_3D_CENPX	Rummagene Transcription Factor Associations 2026	1.0	null
Chagas Disease	DisGeNET Gene-Disease Associations	1.0	null
vincristine_homo sapiens_gpl570_gse7556	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
Hypercalciuria	DisGeNET Gene-Phenotype Associations	1.0	null
Gastroparesis	DisGeNET Gene-Disease Associations	1.0	null
pioglitazone_rattus norvegicus_gpl341_adipose_gds3850	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Precancerous Conditions	CTD Gene-Disease Associations	1.0	1.50298
PMC12035842-ijmsv22p2139s1.pdf-5-ATF4_ATF4	Rummagene Transcription Factor Associations 2026	1.0	null
Brain Cyst	DisGeNET Gene-Disease Associations	1.0	null
Hepatitis	CTD Gene-Disease Associations	1.0	1.53772
CAL-148	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	1.0	1.1678
Cytochrome c oxidase subunit I	InterPro Predicted Protein Domain Annotations	1.0	null
PMC9393262__F1	PFOCR Pathway Figure Associations 2024	1.0	null
Microcephaly	DisGeNET Gene-Disease Associations	1.0	null
Congestive Heart Failure	DisGeNET Gene-Disease Associations	1.0	null
Hearing Loss	CTD Gene-Disease Associations	1.0	1.05423
Nonalcoholic fatty liver disease	WikiPathways Pathways 2024	1.0	null
pof - premature ovarian failure; primary ovarian insufficiency	GAD Gene-Disease Associations	1.0	null
whereas	GeneRIF Biological Term Annotations	1.0	null
Pneumonia	CTD Gene-Disease Associations	1.0	1.35242
HCC1482	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	1.0	1.1678
PMC7405053__F1	PFOCR Pathway Figure Associations 2024	1.0	null
Prostatic Neoplasms	CTD Gene-Disease Associations	1.0	1.41721
Lung Neoplasms	CTD Gene-Disease Associations	1.0	1.25028
Drug-Related Side Effects and Adverse Reactions	CTD Gene-Disease Associations	1.0	2.11482
Ovarian Fetiform Teratoma	DisGeNET Gene-Disease Associations	1.0	null
microcephaly	HPO Gene-Disease Associations	1.0	null
rosiglitazone_rattus norvegicus_skeletal muscle_gds3850	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
PMC6771146__F4	PFOCR Pathway Figure Associations 2024	1.0	null
Wolff-Parkinson-White Syndrome	DisGeNET Gene-Disease Associations	1.0	null
loss	GeneRIF Biological Term Annotations	1.0	null
organic substance metabolic process	GO Biological Process Annotations 2015	1.0	null
abnormal myocardium layer morphology	MPO Gene-Phenotype Associations	1.0	null
morphological abnormality of the gastrointestinal tract	HPO Gene-Disease Associations	1.0	null
Retinal Vascular Tortuosity	DisGeNET Gene-Phenotype Associations	1.0	null
SQSTM1_OE_GDS2653_651_human_IMR-32 neuroblastoma cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
Small Cell Carcinoma Of Lung	DisGeNET Gene-Disease Associations	1.0	null
LEVODOPA	DGIdb Drug Targets 2026	1.0	1.00823
attention deficit hyperactivity disorder	HPO Gene-Disease Associations	1.0	null
PMC4344206__F1	PFOCR Pathway Figure Associations 2024	1.0	null
thyroiditis	HPO Gene-Disease Associations	1.0	null
Dyspnea	CTD Gene-Disease Associations	1.0	1.22599
abnormal tendon morphology	HPO Gene-Disease Associations	1.0	null
Systemic Inflammatory Response Syndrome	DisGeNET Gene-Disease Associations	1.0	null
Glioma	DisGeNET Gene-Disease Associations	1.0	null
Cardiac Arrest	DisGeNET Gene-Disease Associations	1.0	null
Arthrogryposis	DisGeNET Gene-Disease Associations	1.0	null
PMC6977700-aging-12-102667-s004..xlsx-Stage3-The_identified_641_dysregulated_LmiRM-CTs_in_stage_3_of_MI_1_month_after_MI_using_our_method_MITF	Rummagene Transcription Factor Associations 2026	1.0	null
Eczema	DisGeNET Gene-Disease Associations	1.0	null
Hearing Impairment	DisGeNET Gene-Phenotype Associations	1.0	null
resulting	GeneRIF Biological Term Annotations	1.0	null
Obesity	HuGE Navigator Gene-Phenotype Associations	1.0	null
Sudden Cardiac Death	DisGeNET Gene-Phenotype Associations	1.0	null
respiration	GeneRIF Biological Term Annotations	1.0	null
abnormality of skull size	HPO Gene-Disease Associations	1.0	null
duplicated	GeneRIF Biological Term Annotations	1.0	null
PMC4271336-13041_2014_88_MOESM6_ESM.xlsx-Genes_in_GENE_CARD_MR_or_ID-Gene_Cards_MR_and_ID_genes_NR3C2	Rummagene Transcription Factor Associations 2026	1.0	null
Prenatal Exposure Delayed Effects	CTD Gene-Disease Associations	1.0	2.39521
delayed skeletal maturation	HPO Gene-Disease Associations	1.0	null
abnormality of the urinary system	HPO Gene-Disease Associations	1.0	null
Kidney Diseases	CTD Gene-Disease Associations	1.0	2.15771
NIH:OVCAR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-1.45942
Cardiovascular Diseases	CTD Gene-Disease Associations	1.0	1.9403
troglitazone_rattus norvegicus_gpl341_skeletal muscle_gds3850	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
tremor	HPO Gene-Disease Associations	1.0	null
fusion	GeneRIF Biological Term Annotations	1.0	null
SW 1116	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	1.0	1.1678
cardiac interstitial fibrosis	MGI Mouse Phenotype Associations 2023	1.0	null
BJAB	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	1.0	1.1678
PMC8721009-Table11.XLSX-Table_S11genes_involved_in_the-TP53_TP53	Rummagene Transcription Factor Associations 2026	1.0	null
imatinib_homo sapiens_gpl570_gds4177	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
abnormal circulating lactate level	MPO Gene-Phenotype Associations	1.0	null
HS 852.T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	1.0	1.1678
adrenal insufficiency	HPO Gene-Disease Associations	1.0	null
aerobic respiration	GO Biological Process Annotations 2015	1.0	null
PMC5568615__F2	PFOCR Pathway Figure Associations 2024	1.0	null
PMC9529122-pone.0274785.s002.xlsx-S1_Table-S1A_Table_Differentially_expressed_genes_in_HeyA8_overexpressin_ZNF521_vs_HeyA8_control_cells_ZNF521	Rummagene Transcription Factor Associations 2026	1.0	null
PMC4051344__F1A	PFOCR Pathway Figure Associations 2024	1.0	null
oxidation-reduction process	GO Biological Process Annotations 2015	1.0	null
Muscle Hypotonia	DisGeNET Gene-Phenotype Associations	1.0	null
premature	GeneRIF Biological Term Annotations	1.0	null
Myalgia	DisGeNET Gene-Phenotype Associations	1.0	null
PMC9181267-mmc5.xls-FILTERED_OLD-INFvsYOUNG-INF_LUN-GSEA_name_TOPORS	Rummagene Transcription Factor Associations 2026	1.0	null
Ethidium	CTD Gene-Chemical Interactions	1.0	null
Ischemic Stroke	DisGeNET Gene-Disease Associations	1.0	null
Other Creutzfeldt-Jakob Disease	DisGeNET Gene-Disease Associations	1.0	null
abnormality of the orbital region	HPO Gene-Disease Associations	1.0	null
abnormality of the thyroid gland	HPO Gene-Disease Associations	1.0	null
multiple lipomas	HPO Gene-Disease Associations	1.0	null
PMC9590125-40478_2022_1453_MOESM3_ESM.xlsx-OLIG2_UNIQUE_DYS_GENES-OLIG2_TLE_vs_TL_log2FoldChange_1_padj_0_1_OLIG2	Rummagene Transcription Factor Associations 2026	1.0	null
abnormality of the endocrine system	HPO Gene-Disease Associations	1.0	null
Anxiety	DisGeNET Gene-Disease Associations	1.0	null
PMC9590125-40478_2022_1453_MOESM3_ESM.xlsx-OLIG2_UNIQUE_DYS_GENES-NEUN_TLE_vs_TL_log2FoldChange_1_padj_0_1_OLIG2	Rummagene Transcription Factor Associations 2026	1.0	null
functional abnormality of the inner ear	HPO Gene-Disease Associations	1.0	null
alitretinoin_rattus norvegicus_gpl85_liver   b_gds2385	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
Lip And Oral Cavity Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
Ovarian Neoplasm	DisGeNET Gene-Disease Associations	1.0	null
Intestinal Obstruction	DisGeNET Gene-Disease Associations	1.0	null
NCI-H889	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	1.0	1.1678
levetiracetam_rattus norvegicus_gpl1355_hippocampus_gds1864	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
Depression	DisGeNET Gene-Disease Associations	1.0	null
aminoglycoside	GeneRIF Biological Term Annotations	1.0	null
paresthesia	HPO Gene-Disease Associations	1.0	null
respiratory insufficiency	HPO Gene-Disease Associations	1.0	null
another	GeneRIF Biological Term Annotations	1.0	null
COR-L47	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	1.0	1.1678
chlorambucil_homo sapiens_gpl570_gds2970	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
cellular process	GO Biological Process Annotations 2015	1.0	null
abnormality of the nervous system	HPO Gene-Disease Associations	1.0	null
Ovarian Failure, Premature	DisGeNET Gene-Disease Associations	1.0	null
Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
abnormal heart morphology	MPO Gene-Phenotype Associations	1.0	null
Hemorrhage	CTD Gene-Disease Associations	1.0	1.6857
Alzheimer Disease	DisGeNET Gene-Disease Associations	1.0	null
Helicobacter Pylori (H. Pylori) Infection In Conditions Classified Elsewhere And Of Unspecified Site	DisGeNET Gene-Disease Associations	1.0	null
MECHLORETHAMINE HYDROCHLORIDE	DGIdb Drug Targets 2026	1.0	3.208
biological_process	GO Biological Process Annotations 2015	1.0	null
Carcinoma Of Bladder	DisGeNET Gene-Disease Associations	1.0	null
Deafness	DisGeNET Gene-Disease Associations	1.0	null
Abnormalities, Multiple	CTD Gene-Disease Associations	1.0	1.04201
mask-like facies	HPO Gene-Disease Associations	1.0	null
IGF1R_knockout_151_GSE32936	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	-1.0	-2.17023
Creutzfeldt-Jakob Disease	DisGeNET Gene-Disease Associations	1.0	null
PMC3568185__F1	PFOCR Pathway Figure Associations 2024	1.0	null
nucleoside phosphate metabolic process	GO Biological Process Annotations 2015	1.0	null
Tubulointerstitial Abnormality	DisGeNET Gene-Disease Associations	1.0	null
Hearing Loss, Sensorineural	CTD Gene-Disease Associations	1.0	1.37846
PMC3840259__F9	PFOCR Pathway Figure Associations 2024	1.0	null
PMC8927697__F4	PFOCR Pathway Figure Associations 2024	1.0	null
cytochrome	GeneRIF Biological Term Annotations	1.0	null
phosphorylation	GO Biological Process Annotations 2015	1.0	null
PMC12354803-42003_2025_8643_MOESM2_ESM.xlsx-2w_TP63_positive-Gene_TP63	Rummagene Transcription Factor Associations 2026	1.0	null
hydrogen transport	GO Biological Process Annotations 2015	1.0	null
girl	GeneRIF Biological Term Annotations	1.0	null
inducedhearing	GeneRIF Biological Term Annotations	1.0	null
hydrogen ion transmembrane transporter activity	GO Molecular Function Annotations 2015	1.0	null
cerebral atrophy	HPO Gene-Disease Associations	1.0	null
electron carrier activity	GO Molecular Function Annotations 2015	1.0	null
upper motor neuron dysfunction	HPO Gene-Disease Associations	1.0	null
Chronic Obstructive Airway Disease	DisGeNET Gene-Disease Associations	1.0	null
HEY	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-2.02056
Micronuclei, Chromosome-Defective	CTD Gene-Disease Associations	1.0	1.34314
Mitochondrial Diseases	CTD Gene-Disease Associations	1.0	2.04655
feeding difficulties in infancy	HPO Gene-Disease Associations	1.0	null
PMC5846366__F2	PFOCR Pathway Figure Associations 2024	1.0	null
Adenocarcinoma	CTD Gene-Disease Associations	1.0	1.52791
macromolecular complex	GO Cellular Component Annotations 2015	1.0	null
abnormality of the middle ear	HPO Gene-Disease Associations	1.0	null
PMC13187244-41392_2026_2766_MOESM2_ESM.xlsx-Table_S17-Table_S17_Differentially_expressed_genes_in_OCI-AML3_cells_ZMIZ1_inhibitor_SIH-001_4E_vs_DMSO_RUNX2	Rummagene Transcription Factor Associations 2026	1.0	null
Vascular Calcification	DisGeNET Gene-Phenotype Associations	1.0	null
PMC8065571__F1	PFOCR Pathway Figure Associations 2024	1.0	null
hsa-let-7c-5p	MiRTarBase microRNA Targets	1.0	null
PMC10136831__F1	PFOCR Pathway Figure Associations 2024	1.0	null
postnatal growth retardation	MPO Gene-Phenotype Associations	1.0	null
PMC5133671__F8	PFOCR Pathway Figure Associations 2024	1.0	null
pioglitazone_rattus norvegicus_gpl341_skeletal muscle_gds3850	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
RKO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	1.0	1.1678
Peripheral Nervous System Diseases	CTD Gene-Disease Associations	1.0	1.46462
Hyperplasia	CTD Gene-Disease Associations	1.0	2.07866
Ulcerative Colitis	DisGeNET Gene-Disease Associations	1.0	null
hsa-miR-550a-5p	MiRTarBase microRNA Targets	1.0	null
abnormal heart ventricle pressure	MGI Mouse Phenotype Associations 2023	1.0	null
PMC7901659__F1	PFOCR Pathway Figure Associations 2024	1.0	null
abnormal facial expression	HPO Gene-Disease Associations	1.0	null
OKAJIMA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-2.074
Adenomatous Polyps	DisGeNET Gene-Disease Associations	1.0	null
abnormal postnatal growth/weight/body size	MPO Gene-Phenotype Associations	1.0	null
asthenozoospermic	GeneRIF Biological Term Annotations	1.0	null
cytoplasmic part	GO Cellular Component Annotations 2015	1.0	null
PMC4243732__F1	PFOCR Pathway Figure Associations 2024	1.0	null
hsa-miR-320a	MiRTarBase microRNA Targets	1.0	null
Hypertriglyceridemia	CTD Gene-Disease Associations	1.0	1.19868
abnormality of the lens	HPO Gene-Disease Associations	1.0	null
autism	HPO Gene-Disease Associations	1.0	null
hsa-let-7b-5p	MiRTarBase microRNA Targets	1.0	null
edema	MGI Mouse Phenotype Associations 2023	1.0	null
hypertelorism	HPO Gene-Disease Associations	1.0	null
oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor	GO Molecular Function Annotations 2015	1.0	null
PMC12290113-41598_2025_12350_MOESM1_ESM.pdf-4-GATA6-AS1_GATA6	Rummagene Transcription Factor Associations 2026	1.0	null
Carcinoma, Spindle-Cell	DisGeNET Gene-Disease Associations	1.0	null
pimagedine	CTD Gene-Chemical Interactions	1.0	null
Acute Myeloid Leukemia	DisGeNET Gene-Disease Associations	1.0	null
PMC12337709-mmc3.xlsx-Wild-type_vs_RAG1_KO_spleen-Unnamed_1_RAG1	Rummagene Transcription Factor Associations 2026	1.0	null
Dirofilariasis	DisGeNET Gene-Disease Associations	1.0	null
hearing impairment	HPO Gene-Disease Associations	1.0	null
PMC6977700-aging-12-102667-s006..xlsx-Sheet1-The_identified_941_dysregulated_LmiRM-CTs_in_MI_using_traditional_method_MITF	Rummagene Transcription Factor Associations 2026	1.0	null
Oxygen	CTD Gene-Chemical Interactions	1.0	null
phenotypic abnormality	HPO Gene-Disease Associations	1.0	null
abnormal mitochondrial atp synthesis coupled electron transport	MPO Gene-Phenotype Associations	1.0	null
PMC12816669-41698_2025_1236_MOESM1_ESM.pdf-823-DDIT3_DDIT3	Rummagene Transcription Factor Associations 2026	1.0	null
PMC9093150__F10	PFOCR Pathway Figure Associations 2024	1.0	null
Abnormal Aortic Valve Physiology	DisGeNET Gene-Disease Associations	1.0	null
Sensorineural Hearing Loss, Bilateral	DisGeNET Gene-Disease Associations	1.0	null
nfkappab	GeneRIF Biological Term Annotations	1.0	null
OV-90	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-1.20782
developmental regression	HPO Gene-Disease Associations	1.0	null
subassembly	GeneRIF Biological Term Annotations	1.0	null
levetiracetam_rattus norvegicus_gpl1355_brainstem_gds1864	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
nausea and vomiting	HPO Gene-Disease Associations	1.0	null
Parkinson Disease	HuGE Navigator Gene-Phenotype Associations	1.0	null
bound	GeneRIF Biological Term Annotations	1.0	null
Fever	DisGeNET Gene-Phenotype Associations	1.0	null
PMC8497824-Table_4.xlsx-Stage_4_EOMES_vs_Ctrl-Unnamed_1_EOMES	Rummagene Transcription Factor Associations 2026	1.0	null
Coronary Arteriosclerosis	DisGeNET Gene-Disease Associations	1.0	null
Cerebral Calcification	DisGeNET Gene-Phenotype Associations	1.0	null
Guillain-Barre Syndrome, Familial	DisGeNET Gene-Disease Associations	1.0	null
Atherosclerosis	DisGeNET Gene-Disease Associations	1.0	null
HCC366	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-1.49716
PMC9463773__F2	PFOCR Pathway Figure Associations 2024	1.0	null
Sensorineural Hearing Loss (Disorder)	DisGeNET Gene-Disease Associations	1.0	null
ion binding	GO Molecular Function Annotations 2015	1.0	null
dna	GeneRIF Biological Term Annotations	1.0	null
Bone Resorption	CTD Gene-Disease Associations	1.0	1.04276
Cystic Echinococcosis	DisGeNET Gene-Phenotype Associations	1.0	null
functional respiratory abnormality	HPO Gene-Disease Associations	1.0	null
Coenuriasis	DisGeNET Gene-Disease Associations	1.0	null
encoding	GeneRIF Biological Term Annotations	1.0	null
Alzheimer Disease	CTD Gene-Disease Associations	1.0	1.04314
Hypertrophic Cardiomyopathy	DisGeNET Gene-Disease Associations	1.0	null
Cerebral Ventriculomegaly	DisGeNET Gene-Phenotype Associations	1.0	null
abnormality of the fundus	HPO Gene-Disease Associations	1.0	null
colorectal cancer	GAD Gene-Disease Associations	1.0	null
single-organism process	GO Biological Process Annotations 2015	1.0	null
PMC2918459__F1	PFOCR Pathway Figure Associations 2024	1.0	null
intracellular organelle part	GO Cellular Component Annotations 2015	1.0	null
FU97	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-1.07517
Sleep Apnea	DisGeNET Gene-Disease Associations	1.0	null
cox1	GeneRIF Biological Term Annotations	1.0	null
Effects of Nitric Oxide(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
Cardiomyopathies	CTD Gene-Disease Associations	1.0	2.88009
Embryo Loss	CTD Gene-Disease Associations	1.0	1.14234
PMC11585558-41467_2024_54547_MOESM8_ESM.xlsx-TP53_vs_WT_DEG_FFPE-gene_name_TP53	Rummagene Transcription Factor Associations 2026	1.0	null
hyperthyroidism	HPO Gene-Disease Associations	1.0	null
muscle phenotype	MPO Gene-Phenotype Associations	1.0	null
PMC7921413-41467_2021_21650_MOESM5_ESM.xlsx-002_DE-CD34_Blasts_AP1_high_JUN	Rummagene Transcription Factor Associations 2026	1.0	null
Colitis	DisGeNET Gene-Disease Associations	1.0	null
icytochrome	GeneRIF Biological Term Annotations	1.0	null
Cell Transformation, Neoplastic	CTD Gene-Disease Associations	1.0	1.31
ribose phosphate metabolic process	GO Biological Process Annotations 2015	1.0	null
hallucinations	HPO Gene-Disease Associations	1.0	null
iron ion binding	GO Molecular Function Annotations 2015	1.0	null
congenital contracture	HPO Gene-Disease Associations	1.0	null
epilepsia	GeneRIF Biological Term Annotations	1.0	null
aortic dissection	HPO Gene-Disease Associations	1.0	null
Leukemia	DisGeNET Gene-Disease Associations	1.0	null
abnormality of the respiratory system	HPO Gene-Disease Associations	1.0	null
Clonus	DisGeNET Gene-Phenotype Associations	1.0	null
short stature	HPO Gene-Disease Associations	1.0	null
Ovarian Neoplasms	CTD Gene-Disease Associations	1.0	1.34256
membrane part	GO Cellular Component Annotations 2015	1.0	null
Malabsorption, Ctcae	DisGeNET Gene-Phenotype Associations	1.0	null
NCI-H2196	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	1.0	1.1678
Tetralogy Of Fallot	DisGeNET Gene-Disease Associations	1.0	null
tunisian	GeneRIF Biological Term Annotations	1.0	null
PMC7476772__F2	PFOCR Pathway Figure Associations 2024	1.0	null
Muscle Pain Or Weakness	DisGeNET Gene-Phenotype Associations	1.0	null
PMC12699144-CTM2-15-e70552-s001.xlsx-T_CD8_c03_ZNF683-Unnamed_0_ZNF683	Rummagene Transcription Factor Associations 2026	1.0	null
cation transmembrane transport	GO Biological Process Annotations 2015	1.0	null
Parasitemia	DisGeNET Gene-Disease Associations	1.0	null
cytochrome complex	GO Cellular Component Annotations 2015	1.0	null
short attention span	HPO Gene-Disease Associations	1.0	null
endometrial	GeneRIF Biological Term Annotations	1.0	null
Gastric Ulcer	DisGeNET Gene-Disease Associations	1.0	null
Spontaneous Hematomas	DisGeNET Gene-Disease Associations	1.0	null
Coronary Artery Disease	DisGeNET Gene-Disease Associations	1.0	null
heart inflammation	MPO Gene-Phenotype Associations	1.0	null
Thrombocythemia, Essential	DisGeNET Gene-Disease Associations	1.0	null
Tonic - Clonic Seizures	DisGeNET Gene-Disease Associations	1.0	null
PMC9477170__F3	PFOCR Pathway Figure Associations 2024	1.0	null
abnormality of cell physiology	HPO Gene-Disease Associations	1.0	null
cardiac interstitial fibrosis	MPO Gene-Phenotype Associations	1.0	null
PMC2633299__F11	PFOCR Pathway Figure Associations 2024	1.0	null
abnormality of the pancreas	HPO Gene-Disease Associations	1.0	null
Enzyme Inhibition Disorder	DisGeNET Gene-Phenotype Associations	1.0	null
Paresthesia	CTD Gene-Disease Associations	1.0	1.09366
PMC7774657__F1	PFOCR Pathway Figure Associations 2024	1.0	null
Neoplasms, Experimental	CTD Gene-Disease Associations	1.0	1.46961
PMC8980325__F1	PFOCR Pathway Figure Associations 2024	1.0	null
PMC3928987__F2	PFOCR Pathway Figure Associations 2024	1.0	null
Exanthema	CTD Gene-Disease Associations	1.0	1.2415
abnormality of head or neck	HPO Gene-Disease Associations	1.0	null
abnormal cell physiology	MPO Gene-Phenotype Associations	1.0	null
Headache	DisGeNET Gene-Phenotype Associations	1.0	null
PMC11465086-mmc2.xlsx-Table_ES_1_markers_c0_LPS_Vs_Co-Gene_Expression_Data_1_markers_c0_LPS_Vs_Control_related_to_Figure_5_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
Blood Coagulation Disorders	CTD Gene-Disease Associations	1.0	1.12703
PMC12663032-mmc7.xlsx-Supp_T6-Supplemental_Table_6_Dual_treated_vs_vehicle_treated_MSC_top_DEGs_MSC	Rummagene Transcription Factor Associations 2026	1.0	null
Idiopathic Pulmonary Fibrosis	DisGeNET Gene-Disease Associations	1.0	null
NCI-H1581	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-0.845162
Hurthle Cell Tumor	DisGeNET Gene-Disease Associations	1.0	null
Aplasia/Hypoplasia Of The Cerebellum	DisGeNET Gene-Phenotype Associations	1.0	null
plicamycin_homo sapiens_gpl570_gse25127	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
oxidase	GeneRIF Biological Term Annotations	1.0	null
Infertility, Female	CTD Gene-Disease Associations	1.0	1.04904
PA-TU-8902	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-1.16344
Ovarian Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
Alzheimer's Disease_Entorhinal cortex_GSE5281	GEO Signatures of Differentially Expressed Genes for Diseases	1.0	2.53591
abnormality of mitochondrial metabolism	HPO Gene-Disease Associations	1.0	null
brain atrophy	HPO Gene-Disease Associations	1.0	null
abnormality of the skeletal system	HPO Gene-Disease Associations	1.0	null
abnormality of urine calcium concentration	HPO Gene-Disease Associations	1.0	null
abnormality of the oral cavity	HPO Gene-Disease Associations	1.0	null
Systemic Onset Juvenile Chronic Arthritis	DisGeNET Gene-Disease Associations	1.0	null
inorganic cation transmembrane transport	GO Biological Process Annotations 2015	1.0	null
Neoplasm Invasiveness	CTD Gene-Disease Associations	1.0	1.08442
physically	GeneRIF Biological Term Annotations	1.0	null
Growth Abnormality	DisGeNET Gene-Phenotype Associations	1.0	null
PMC4966762__F1	PFOCR Pathway Figure Associations 2024	1.0	null
oxygen	GeneRIF Biological Term Annotations	1.0	null
abnormality of the pulmonary vasculature	HPO Gene-Disease Associations	1.0	null
Myelodysplastic Syndromes	HuGE Navigator Gene-Phenotype Associations	1.0	null
vascular skin abnormality	HPO Gene-Disease Associations	1.0	null
vitamin c_homo sapiens_gpl570_gse11919	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Adenoma	DisGeNET Gene-Disease Associations	1.0	null
Ventricular Dysfunction	DisGeNET Gene-Phenotype Associations	1.0	null
NCI-H322T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-0.936836
PMC6767532__F1	PFOCR Pathway Figure Associations 2024	1.0	null
Heart Defects, Congenital	CTD Gene-Disease Associations	1.0	1.06734
abnormality of neuronal migration	HPO Gene-Disease Associations	1.0	null
abeta	GeneRIF Biological Term Annotations	1.0	null
Nervous System Diseases	CTD Gene-Disease Associations	1.0	1.62357
variants	GeneRIF Biological Term Annotations	1.0	null
myopathy	HPO Gene-Disease Associations	1.0	null
a7445g	GeneRIF Biological Term Annotations	1.0	null
Stroke	DisGeNET Gene-Phenotype Associations	1.0	null
type i diabetes mellitus	HPO Gene-Disease Associations	1.0	null
weakness due to upper motor neuron dysfunction	HPO Gene-Disease Associations	1.0	null
Glaucoma	DisGeNET Gene-Disease Associations	1.0	null
PANC 02.03	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-0.936836
amoxicillin_rattus norvegicus_gpl341_proximal small intestine_gds1273	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
abnormal muscle morphology	MPO Gene-Phenotype Associations	1.0	null
Adult Meningioma	DisGeNET Gene-Disease Associations	1.0	null
PMC9882185-media-4.xlsx-Neuron_KD-gene_name_AR	Rummagene Transcription Factor Associations 2026	1.0	null
Progressive Sensorineural Hearing Impairment	DisGeNET Gene-Disease Associations	1.0	null
constipation	HPO Gene-Disease Associations	1.0	null
Episodic Vomiting	DisGeNET Gene-Phenotype Associations	1.0	null
pioglitazone_rattus norvegicus_gpl1355_17 months_gds4019	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
cardiomyopathy	MPO Gene-Phenotype Associations	1.0	null
PMC1386115__F3	PFOCR Pathway Figure Associations 2024	1.0	null
interact	GeneRIF Biological Term Annotations	1.0	null
abnormality of peripheral nerve conduction	HPO Gene-Disease Associations	1.0	null
Mucoepidermoid Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
abnormality of vision evoked potentials	HPO Gene-Disease Associations	1.0	null
hypothyroidism	HPO Gene-Disease Associations	1.0	null
localization	GO Biological Process Annotations 2015	1.0	null
arterial stenosis	HPO Gene-Disease Associations	1.0	null
abnormal pattern of respiration	HPO Gene-Disease Associations	1.0	null
feeding difficulties	HPO Gene-Disease Associations	1.0	null
Aortic Aneurysm	DisGeNET Gene-Disease Associations	1.0	null
flexion contracture	HPO Gene-Disease Associations	1.0	null
PMC5946182__F4	PFOCR Pathway Figure Associations 2024	1.0	null
americans	GeneRIF Biological Term Annotations	1.0	null
Melas Syndrome	DisGeNET Gene-Disease Associations	1.0	null
abnormal cardiovascular system physiology	MPO Gene-Phenotype Associations	1.0	null
muscle weakness	HPO Gene-Disease Associations	1.0	null
Asthma	CTD Gene-Disease Associations	1.0	1.30117
abnormality of the ocular region	HPO Gene-Disease Associations	1.0	null
Dwarfism	DisGeNET Gene-Disease Associations	1.0	null
troglitazone_rattus norvegicus_gpl341_liver_gds3850	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
Idiopathic Pulmonary Arterial Hypertension	DisGeNET Gene-Disease Associations	1.0	null
alzheimer's disease	GAD Gene-Disease Associations	1.0	null
cardiomyopathy	MGI Mouse Phenotype Associations 2023	1.0	null
Heart Failure	CTD Gene-Disease Associations	1.0	1.30329
pioglitazone_rattus norvegicus_gpl341_gse21329	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Motor Neuron Disease	CTD Gene-Disease Associations	1.0	1.16733
PMC11551338-pnas.2411189121.sd01.xlsx-PXR-Unnamed_0_NR1I2	Rummagene Transcription Factor Associations 2026	1.0	null
PMC3535180__F1	PFOCR Pathway Figure Associations 2024	1.0	null
Neurologic Manifestations	CTD Gene-Disease Associations	1.0	1.18059
Leigh Disease	DisGeNET Gene-Disease Associations	1.0	null
neurological speech impairment	HPO Gene-Disease Associations	1.0	null
Metaplastic tuft cell(MTC)_Pancreas_Mouse	CellMarker Gene-Cell Type Associations	1.0	null
fragment	GeneRIF Biological Term Annotations	1.0	null
MKN-45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-1.33906
Fetal Growth Retardation	DisGeNET Gene-Phenotype Associations	1.0	null
Dietary Fats	CTD Gene-Chemical Interactions	1.0	null
Stroke	CTD Gene-Disease Associations	1.0	1.2898
PMC10800016-table_s3_20230913_ddad186.xlsx-DUX4-aff_II-Unnamed_1_DUX4	Rummagene Transcription Factor Associations 2026	1.0	null
wide	GeneRIF Biological Term Annotations	1.0	null
abnormality of skin morphology	HPO Gene-Disease Associations	1.0	null
Animal Mammary Neoplasms	DisGeNET Gene-Phenotype Associations	1.0	null
PMC3921548__F1	PFOCR Pathway Figure Associations 2024	1.0	null
Myocardial Infarction	CTD Gene-Disease Associations	1.0	1.45115
Vegetation	DisGeNET Gene-Disease Associations	1.0	null
Vomiting	CTD Gene-Disease Associations	1.0	1.43919
Retinal Telangiectasia	DisGeNET Gene-Disease Associations	1.0	null
Tinnitus	CTD Gene-Disease Associations	1.0	1.02373
Reduced Tendon Reflexes	DisGeNET Gene-Phenotype Associations	1.0	null
metabolic process	GO Biological Process Annotations 2015	1.0	null
Electroencephalogram Abnormal	DisGeNET Gene-Phenotype Associations	1.0	null
HL-60	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	1.0	1.1678
PMC3745317__F1	PFOCR Pathway Figure Associations 2024	1.0	null
hemiplegia/hemiparesis	HPO Gene-Disease Associations	1.0	null
hsa-miR-16-5p	MiRTarBase microRNA Targets	1.0	null
mitochondrial membrane	GO Cellular Component Annotations 2015	1.0	null
LN-229	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-1.07517
abnormal heart left ventricle morphology	MPO Gene-Phenotype Associations	1.0	null
substrate-specific transmembrane transporter activity	GO Molecular Function Annotations 2015	1.0	null
PMC4150779__F7	PFOCR Pathway Figure Associations 2024	1.0	null
partialis	GeneRIF Biological Term Annotations	1.0	null
znf217_22593193_mda_mb_231_gof_human_gpl570_gse35511	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	1.0	0.090007
sensorineural hearing impairment	HPO Gene-Disease Associations	1.0	null
PMC6627635__F3	PFOCR Pathway Figure Associations 2024	1.0	null
PMC8901773-41598_2022_7986_MOESM3_ESM.xls-T_vs_LPS-Gene_symbol_ENSEMBL_ID_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
hypopituitarism	HPO Gene-Disease Associations	1.0	null
Carcinomatosis	DisGeNET Gene-Phenotype Associations	1.0	null
Cytochrome c oxidase, subunit I, copper-binding site	InterPro Predicted Protein Domain Annotations	1.0	null
Breast Neoplasms	CTD Gene-Disease Associations	1.0	1.92801
nucleobase-containing small molecule metabolic process	GO Biological Process Annotations 2015	1.0	null
upregulated	GeneRIF Biological Term Annotations	1.0	null
PMC4512023__F4	PFOCR Pathway Figure Associations 2024	1.0	null
atrophy/degeneration affecting the central nervous system	HPO Gene-Disease Associations	1.0	null
PMC5785435__F2	PFOCR Pathway Figure Associations 2024	1.0	null
Memory Impairment	DisGeNET Gene-Phenotype Associations	1.0	null
known	GeneRIF Biological Term Annotations	1.0	null
headache	HPO Gene-Disease Associations	1.0	null
Irritable Bowel Syndrome	HuGE Navigator Gene-Phenotype Associations	1.0	null
Generalized Hirsutism	DisGeNET Gene-Phenotype Associations	1.0	null
PMC8763135__F3	PFOCR Pathway Figure Associations 2024	1.0	null
DPP3_OE_GDS2653_650_human_IMR-32 neuroblastoma cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
cyclosporine_homo sapiens_gpl570_gse15935	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
PMC11960529-mmc4.xlsx-Ventricular_ZNF711_KOoverCT-gene_ZNF711	Rummagene Transcription Factor Associations 2026	1.0	null
dexamethasone_rattus norvegicus_gpl1355_gds3746	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
Asthma	DisGeNET Gene-Disease Associations	1.0	null
Gastroesophageal Reflux Disease	DisGeNET Gene-Disease Associations	1.0	null
PMC6177612__F3	PFOCR Pathway Figure Associations 2024	1.0	null
biology	GeneRIF Biological Term Annotations	1.0	null
PMC9685611__F2	PFOCR Pathway Figure Associations 2024	1.0	null
PMC3986808__F2	PFOCR Pathway Figure Associations 2024	1.0	null
OVCAR433	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-1.07517
Coronary Heart Disease	DisGeNET Gene-Disease Associations	1.0	null
PMC9170821-JCMM-26-3183-s001.xlsx-Macro_DAPI_ERG_VaD_vs_NC-Gene_ERG	Rummagene Transcription Factor Associations 2026	1.0	null
abnormality of the pituitary gland	HPO Gene-Disease Associations	1.0	null
heteroplasmic	GeneRIF Biological Term Annotations	1.0	null
Endothelial Dysfunction	DisGeNET Gene-Phenotype Associations	1.0	null
Recurrent Urinary Tract Infection	DisGeNET Gene-Disease Associations	1.0	null
Paresis	CTD Gene-Disease Associations	1.0	1.01701
Multiple Lipomata	DisGeNET Gene-Disease Associations	1.0	null
Multiple Sclerosis, Relapsing-Remitting	DisGeNET Gene-Disease Associations	1.0	null
PMC6102400__F1	PFOCR Pathway Figure Associations 2024	1.0	null
primary adrenal insufficiency	HPO Gene-Disease Associations	1.0	null
Dissection Of Aorta	DisGeNET Gene-Disease Associations	1.0	null
Heart Diseases	CTD Gene-Disease Associations	1.0	2.05708
ribonucleoside metabolic process	GO Biological Process Annotations 2015	1.0	null
muscular hypotonia	HPO Gene-Disease Associations	1.0	null
alitretinoin_rattus norvegicus_gpl85_mammary gland_gds2385	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
oxidative phosphorylation	KEGG Pathways	1.0	null
PMC12375500-41388_2025_3449_MOESM1_ESM.xlsx-DBP_down-gene_DBP	Rummagene Transcription Factor Associations 2026	1.0	null
abnormality of carbohydrate metabolism/homeostasis	HPO Gene-Disease Associations	1.0	null
Albuminuria	CTD Gene-Disease Associations	1.0	1.166
PMC10779133__F4	PFOCR Pathway Figure Associations 2024	1.0	null
Constipation	DisGeNET Gene-Phenotype Associations	1.0	null
renal insufficiency	HPO Gene-Disease Associations	1.0	null
KNS-62	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	1.0	1.1678
PMC9590125-40478_2022_1453_MOESM3_ESM.xlsx-PAX6_UNIQUE_DYS_GENES-NEUN_TLE_vs_TL_log2FoldChange_1_padj_0_1_PAX6	Rummagene Transcription Factor Associations 2026	1.0	null
PMC4442271__F1	PFOCR Pathway Figure Associations 2024	1.0	null
PMC12229841-Table2.xlsx-BL_LPS_vs_6mo_LPS-Negative_logFC_up_at_baseline_Postive_logFC_up_after_6mo_of_heavy_drinking_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
PMC4848680__F4	PFOCR Pathway Figure Associations 2024	1.0	null
PMC9170821-JCMM-26-3183-s001.xlsx-Neu_DAPI_ERG_VaDadj_vs_NC-Gene_ERG	Rummagene Transcription Factor Associations 2026	1.0	null
abnormality of body weight	HPO Gene-Disease Associations	1.0	null
Lupus Vulgaris	DisGeNET Gene-Disease Associations	1.0	null
subunits	GeneRIF Biological Term Annotations	1.0	null
abnormal mitochondrial ATP synthesis coupled electron transport	MGI Mouse Phenotype Associations 2023	1.0	null
Carcinoma, Hepatocellular	CTD Gene-Disease Associations	1.0	1.60477
Oligospermia	CTD Gene-Disease Associations	1.0	1.01324
population	GeneRIF Biological Term Annotations	1.0	null
hypoparathyroidism	HPO Gene-Disease Associations	1.0	null
oxidoreductase activity, acting on a heme group of donors	GO Molecular Function Annotations 2015	1.0	null
cell part	GO Cellular Component Annotations 2015	1.0	null
growth abnormality	HPO Gene-Disease Associations	1.0	null
Cerebral Infarction	DisGeNET Gene-Disease Associations	1.0	null
SNCA	Hub Proteins Protein-Protein Interactions	1.0	null
PMC3671288__F1	PFOCR Pathway Figure Associations 2024	1.0	null
abnormality of the liver	HPO Gene-Disease Associations	1.0	null
mitochondrial part	GO Cellular Component Annotations 2015	1.0	null
nucleoside triphosphate metabolic process	GO Biological Process Annotations 2015	1.0	null
HCC4011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-1.41942
subcutaneous hemorrhage	HPO Gene-Disease Associations	1.0	null
PMC8268779__F1	PFOCR Pathway Figure Associations 2024	1.0	null
TC-71	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	1.0	1.1678
Cognition Disorders	CTD Gene-Disease Associations	1.0	1.83753
intracellular part	GO Cellular Component Annotations 2015	1.0	null
KMS-12-PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	1.0	1.1678
Icthyosis	DisGeNET Gene-Disease Associations	1.0	null
hsa-miR-92a-3p	MiRTarBase microRNA Targets	1.0	null
Dystonia	DisGeNET Gene-Phenotype Associations	1.0	null
Slow Decrease In Visual Acuity	DisGeNET Gene-Phenotype Associations	1.0	null
PMC9006795__F1	PFOCR Pathway Figure Associations 2024	1.0	null
hypopigmentation of the skin	HPO Gene-Disease Associations	1.0	null
Quercetin and Nf-kB/ AP-1 induced cell apoptosis(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
hyperactivity	HPO Gene-Disease Associations	1.0	null
abnormal peripheral nervous system morphology	HPO Gene-Disease Associations	1.0	null
abnormality of the abdomen	HPO Gene-Disease Associations	1.0	null
PMC9197867__F2	PFOCR Pathway Figure Associations 2024	1.0	null
hsa-miR-23b-3p	MiRTarBase microRNA Targets	1.0	null
Cytochrome-C Oxidase Deficiency	DisGeNET Gene-Disease Associations	1.0	null
PMC5480600__F3	PFOCR Pathway Figure Associations 2024	1.0	null
decitabine_homo sapiens_gpl570_gse30985	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
hsa-miR-378a-5p	MiRTarBase microRNA Targets	1.0	null
abnormal renal physiology	HPO Gene-Disease Associations	1.0	null
PMC6580171__F4	PFOCR Pathway Figure Associations 2024	1.0	null
decreased total tissue mass	MPO Gene-Phenotype Associations	1.0	null
Cystic Fibrosis	DisGeNET Gene-Disease Associations	1.0	null
nitrogen	GeneRIF Biological Term Annotations	1.0	null
Streptococcal Pneumonia	DisGeNET Gene-Disease Associations	1.0	null
PMC5900450__F2	PFOCR Pathway Figure Associations 2024	1.0	null
PMC8492658__F1	PFOCR Pathway Figure Associations 2024	1.0	null
Unspecified Visual Loss	DisGeNET Gene-Phenotype Associations	1.0	null
PMC5759779__F3	PFOCR Pathway Figure Associations 2024	1.0	null
generation	GeneRIF Biological Term Annotations	1.0	null
BT-483	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	1.0	1.1678
abnormality of connective tissue	HPO Gene-Disease Associations	1.0	null
Attention Deficit Disorder	DisGeNET Gene-Disease Associations	1.0	null
abnormal body composition	MPO Gene-Phenotype Associations	1.0	null
PMC6977700-aging-12-102667-s006..xlsx-Sheet1-The_identified_1173_dysregulated_LmiRM-CTs_in_MI_using_our_method_MITF	Rummagene Transcription Factor Associations 2026	1.0	null
PMC7789003__F1	PFOCR Pathway Figure Associations 2024	1.0	null
abnormality of the hair	HPO Gene-Disease Associations	1.0	null
ovary	HPA Tissue Protein Expression Profiles	-1.0	-1.25316
Ptosis	DisGeNET Gene-Disease Associations	1.0	null
Carcinoma Of Lung	DisGeNET Gene-Disease Associations	1.0	null
Squamous Cell Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
Skin Neoplasms	CTD Gene-Disease Associations	1.0	1.25463
Hallucinations	DisGeNET Gene-Disease Associations	1.0	null
diabetes mellitus	HPO Gene-Disease Associations	1.0	null
abnormality of skeletal morphology	HPO Gene-Disease Associations	1.0	null
abnormal cellular respiration	MPO Gene-Phenotype Associations	1.0	null
Blepharoptosis	DisGeNET Gene-Disease Associations	1.0	null
small molecule metabolic process	GO Biological Process Annotations 2015	1.0	null
alitretinoin_rattus norvegicus_gpl85_gse3952	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Mammary Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
hsa-miR-146b-5p	MiRTarBase microRNA Targets	1.0	null
case	GeneRIF Biological Term Annotations	1.0	null
Anaplasia	DisGeNET Gene-Disease Associations	1.0	null
myelodysplastic	GeneRIF Biological Term Annotations	1.0	null
dysfunction	GeneRIF Biological Term Annotations	1.0	null
apnea	HPO Gene-Disease Associations	1.0	null
report	GeneRIF Biological Term Annotations	1.0	null
Substance Withdrawal Syndrome	CTD Gene-Disease Associations	1.0	1.18816
PMC8698717__F3	PFOCR Pathway Figure Associations 2024	1.0	null
abnormality of hindbrain morphology	HPO Gene-Disease Associations	1.0	null
clinical modifier	HPO Gene-Disease Associations	1.0	null
SCC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles	-1.0	-1.25232
Helicobacter-Associated Gastritis	DisGeNET Gene-Disease Associations	1.0	null
type 2 diabetes	GAD Gene-Disease Associations	1.0	null
screening	GeneRIF Biological Term Annotations	1.0	null
abnormality of the skin	HPO Gene-Disease Associations	1.0	null
Primary Malignant Neoplasm Of Lung	DisGeNET Gene-Disease Associations	1.0	null
PMC6117983__F4	PFOCR Pathway Figure Associations 2024	1.0	null
Thyroiditis	DisGeNET Gene-Disease Associations	1.0	null
Fibrosis	CTD Gene-Disease Associations	1.0	1.72717
brain very small	HPO Gene-Disease Associations	1.0	null
PMC2945562__F8	PFOCR Pathway Figure Associations 2024	1.0	null
abnormal joint morphology	HPO Gene-Disease Associations	1.0	null
Malignant Tumor Of Colon	DisGeNET Gene-Disease Associations	1.0	null
Eclampsia	DisGeNET Gene-Disease Associations	1.0	null
ophthalmoparesis	HPO Gene-Disease Associations	1.0	null
papilledema	HPO Gene-Disease Associations	1.0	null
Hypertrophy	DisGeNET Gene-Phenotype Associations	1.0	null
dexamethasone_rattus norvegicus_gpl85_gse6216	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
increased circulating lactate level	MGI Mouse Phenotype Associations 2023	1.0	null