association	dataset	threshold value	standardized value
59M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.71437
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
SNB19	CCLE Cell Line Gene CNV Profiles	1.0	2.50421
SU-DHL-6	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.22494
PRRX2	JASPAR Predicted Transcription Factor Targets	1.0	null
KYSE450	CCLE Cell Line Gene CNV Profiles	1.0	1.49095
KMS-12-BM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.83976
RBBP5	ENCODE Transcription Factor Targets	1.0	null
COLO 800	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.992194
CTCF_ES-Bruce4_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SMC3	ENCODE Transcription Factor Targets	1.0	null
neuromuscular disease	GWASdb SNP-Disease Associations	1.0	0.588801
all	GWASdb SNP-Phenotype Associations	1.0	0.03031
hypersensitivity reaction type ii disease	GWASdb SNP-Disease Associations	1.0	0.124082
FU97	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1265
BL41	CCLE Cell Line Gene CNV Profiles	-1.0	-1.79136
muscular hypotonia	GWASdb SNP-Phenotype Associations	1.0	0.50086
FTC238	CCLE Cell Line Gene CNV Profiles	-1.0	-2.0662
YY1	JASPAR Predicted Transcription Factor Targets	1.0	null
PK-59	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.840437
zfpm2_19411579_heart_lof_mouse_gpl1261_gds3659	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	1.0	0.153246
HDMYZ	CCLE Cell Line Gene CNV Profiles	-1.0	-2.06662
STAT5A	ChEA Transcription Factor Targets	1.0	null
NCIH146	CCLE Cell Line Gene CNV Profiles	1.0	1.63765
abnormality of muscle physiology	GWASdb SNP-Phenotype Associations	1.0	0.50086
COV413A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.877857
WIDR	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.40514
NCI-N87	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.944866
SNU-601	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.69507
TUHR14TKB	CCLE Cell Line Gene CNV Profiles	1.0	1.41671
POLR2A	ENCODE Transcription Factor Targets	1.0	null
A-673	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.19093
OV7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03208
SUM 1315M02	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.853897
HSC-3	COSMIC Cell Line Gene CNV Profiles	1.0	4.51153
U-2 OS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.57217
NCIH28	CCLE Cell Line Gene CNV Profiles	-1.0	-1.49786
FOXL1	JASPAR Predicted Transcription Factor Targets	1.0	null
UM-UC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.920148
NCI-N417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.37445
NCI-H28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.69507
MDA-MB-330	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.81638
HEP3B217	CCLE Cell Line Gene CNV Profiles	1.0	1.80155
E2A	MotifMap Predicted Transcription Factor Targets	1.0	null
PC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.70576
HCC1143	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.54959
SUPHD1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.82556
STAT3	ChEA Transcription Factor Targets	1.0	null
PK-45H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20505
H3K27me3_SK-N-SH_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EFM-19	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.32658
NCIH510	CCLE Cell Line Gene CNV Profiles	1.0	1.80712
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.14777
CTCF_CH12.LX_mm9_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RBBP5_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
OPM-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1909
H3K4me2_CH12.LX_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
pou4f1_20376082_fetal_liver_lof_mouse_gpl1261_gds4042	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	-1.0	-0.443937
SMC3_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
abnormality of the musculature	GWASdb SNP-Phenotype Associations	1.0	0.272483
t70-white-adipose_female_2w	MoTrPAC Rat Endurance Exercise Training	1.0	2.39075
BEN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.79668
MKN-45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.920148
CAL 27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09426
POLR2A_GM12878_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RT-112	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2576
MYC	ENCODE Transcription Factor Targets	1.0	null
NCI-H358	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1265
neuromuscular junction disease	GWASdb SNP-Disease Associations	1.0	0.588801
MDA-MB-157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.54099
t70-white-adipose_female_8w	MoTrPAC Rat Endurance Exercise Training	1.0	11.3198
H2AFZ_keratinocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SNU886	CCLE Cell Line Gene CNV Profiles	-1.0	-2.0481
A673	CCLE Cell Line Gene CNV Profiles	-1.0	-1.92895
LP-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.944866
H3K27me3_kidney epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PDX1	JASPAR Predicted Transcription Factor Targets	1.0	null
NUGC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.991536
LMSU	CCLE Cell Line Gene CNV Profiles	-1.0	-2.5843
NCI-H146	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.81638
SMC3_MEL cell line_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
t70-white-adipose_consensus	MoTrPAC Rat Endurance Exercise Training	1.0	9.89633
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.69507
PANC 04.03	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.988547
SUM 52PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35711
OVKATE	CCLE Cell Line Gene CNV Profiles	-1.0	-1.5754
CAL27	CCLE Cell Line Gene CNV Profiles	-1.0	-1.63837
GATA2	JASPAR Predicted Transcription Factor Targets	1.0	null
NCI-H2171	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.83976
SW1573	CCLE Cell Line Gene CNV Profiles	-1.0	-1.44347
RAD21_MEL cell line_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
disease of anatomical entity	GWASdb SNP-Disease Associations	1.0	0.026273
NCI-H2373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03208
HS 940.T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35831
SW 837	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.876519
NCIH2405	CCLE Cell Line Gene CNV Profiles	-1.0	-1.51333
RAD21	ENCODE Transcription Factor Targets	1.0	null
NCI-H187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.57217
HS 69ST	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.71437
RAD21_MEL cell line_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PATU8902	CCLE Cell Line Gene CNV Profiles	-1.0	-1.49329
SCC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.32564
PC3	CCLE Cell Line Gene CNV Profiles	1.0	1.45463
HUP-T3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0025
K029AX	CCLE Cell Line Gene CNV Profiles	-1.0	-1.50111
STAT5-23275557-MAMMARY-EPITHELIUM-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
PK59	CCLE Cell Line Gene CNV Profiles	-1.0	-1.31991
STAT3	ENCODE Transcription Factor Targets	1.0	null
G111	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.57064
PA-TU-8902	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.69507
NURR1	MotifMap Predicted Transcription Factor Targets	1.0	null
HSC3	CCLE Cell Line Gene CNV Profiles	1.0	2.05875
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-3.17137
COLO320	CCLE Cell Line Gene CNV Profiles	1.0	1.32779
nfe2l2_00000000_neonate_p3_lung_lof_mouse_gpl1261_gse29632	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	-1.0	-0.022459
PEER	CCLE Cell Line Gene CNV Profiles	1.0	1.80419
U251MG	CCLE Cell Line Gene CNV Profiles	1.0	2.40876
HCC1954	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.937211
NCI-H1693	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.69507
ESC_V6.5_UP_EARLY.V1	MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations	1.0	null
OVCAR-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11438
EFO-27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2576
COLO 320DM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.37445
PK-45P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.832916
pyrazinamide_mus musculus_gpl6246_gse48027	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
HS729	CCLE Cell Line Gene CNV Profiles	1.0	1.71436
EOL1	CCLE Cell Line Gene CNV Profiles	1.0	1.40164
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0025
G61	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05292
BFTC-905	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.923114
disease	GWASdb SNP-Disease Associations	1.0	0.024001
RT11284	CCLE Cell Line Gene CNV Profiles	-1.0	-1.47391
NCI-H2803	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06489
E2F4	ENCODE Transcription Factor Targets	1.0	null
SUDHL6	CCLE Cell Line Gene CNV Profiles	-1.0	-1.93079
SCC-25	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.920148
RAD21_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
autoimmune disease of the nervous system	GWASdb SNP-Disease Associations	1.0	0.588801
HCC366	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17458
CTCF_MEL cell line_mm9_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC2911	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.950589
nervous system disease	GWASdb SNP-Disease Associations	1.0	0.048524
COV413B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.840437
SUM 149PT	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05192
HCC1937	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.78299
immune system disease	GWASdb SNP-Disease Associations	1.0	0.049216
H3K9me1_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
ChIP_STAT3_19079543	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
generalized hypotonia	GWASdb SNP-Phenotype Associations	1.0	0.50086
HCC1500	CCLE Cell Line Gene CNV Profiles	1.0	3.222
HCC366	CCLE Cell Line Gene CNV Profiles	1.0	1.33187
EFM19	CCLE Cell Line Gene CNV Profiles	1.0	1.40238
SQ1	CCLE Cell Line Gene CNV Profiles	1.0	1.45602
SOX4	MotifMap Predicted Transcription Factor Targets	1.0	null
CTCF_MEL cell line_mm9_6	ENCODE Transcription Factor Binding Site Profiles	1.0	null
IPC-298	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.920148
HCC1493	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.46856
ETS2	MotifMap Predicted Transcription Factor Targets	1.0	null
NCI-H2722	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.83976
KYSE-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.25481
G361	CCLE Cell Line Gene CNV Profiles	1.0	1.33043
myasthenia gravis	GWASdb SNP-Disease Associations	1.0	0.588801
TT	CCLE Cell Line Gene CNV Profiles	1.0	1.38857
PK45H	CCLE Cell Line Gene CNV Profiles	-1.0	-1.74042
VCAP	CCLE Cell Line Gene CNV Profiles	1.0	1.9893
MDA-MB-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.872613
DAOY	CCLE Cell Line Gene CNV Profiles	-1.0	-1.61822
SKLU1	CCLE Cell Line Gene CNV Profiles	1.0	1.46341
DETROIT562	CCLE Cell Line Gene CNV Profiles	1.0	1.91212
HCC1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23802
NCI-H1792	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.65146
t70-white-adipose_female_4w	MoTrPAC Rat Endurance Exercise Training	1.0	4.30474
RPMI8402	CCLE Cell Line Gene CNV Profiles	1.0	1.88494
CAOV3	CCLE Cell Line Gene CNV Profiles	1.0	1.39251
KMS-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32257
537 MEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.991536
STAT3-19079543-MESC-mouse	ChEA Transcription Factor Binding Site Profiles	1.0	null
GA-10	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25645
OVKATE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.15598
NR3C1	JASPAR Predicted Transcription Factor Targets	1.0	null
NCI-H2135	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10818
NCI-H510A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.22564
MYC_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
UACC62	CCLE Cell Line Gene CNV Profiles	-1.0	-1.32847
CAPAN-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.25481
H2AFZ_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
YH13	CCLE Cell Line Gene CNV Profiles	-1.0	-1.42937
U266B1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.22494
BT-549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.3644
HCC2279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.59503
KYSE-450	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.39165
A172	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.877857
LN-229	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03208
HUG1N	CCLE Cell Line Gene CNV Profiles	-1.0	-3.18946
HCC1419	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.876519
UMUC3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.35415
CTCF	ENCODE Transcription Factor Targets	1.0	null
DETROIT 562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.81638
KU812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05292
U266B1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.0605
NCIH1435	CCLE Cell Line Gene CNV Profiles	1.0	1.92747
REC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.877165
PE01	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1265
E2F4_MCF 10A_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
neuropathy	GWASdb SNP-Disease Associations	1.0	0.349434
abnormal muscle tone	GWASdb SNP-Phenotype Associations	1.0	0.50086
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
MS751	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.83976
BEN	CCLE Cell Line Gene CNV Profiles	1.0	1.45533
phenotypic abnormality	GWASdb SNP-Phenotype Associations	1.0	0.604478
NCI-H1435	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0025
HOP-62	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.853897
STAT3_MCF 10A_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CAKI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.40514
KLE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.872613
NCIH1339	CCLE Cell Line Gene CNV Profiles	1.0	1.61007
hypersensitivity reaction disease	GWASdb SNP-Disease Associations	1.0	0.109778
NUGC-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.69507
GATA3	JASPAR Predicted Transcription Factor Targets	1.0	null