association dataset threshold value standardized value MDA-MB-415 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.46294 retroparafascicular area of thalamus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.32214 functions GeneRIF Biological Term Annotations 1.0 null alimentary canal TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.060206 similar GeneRIF Biological Term Annotations 1.0 null Perturb_818_KO_BCL7A/BCL7B/BCL7C_SRP345839 PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 -20.0 GSE223893_2_v_10_setd2_human RummaGEO Gene Perturbation Signatures 1.0 null PRDM1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 52.0024 GSE135030_11_v_7_fludarabine_human RummaGEO Drug Perturbation Signatures -1.0 null IX, left, paravermis Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.908775 membrane part COMPARTMENTS Text-mining Protein Localization Evidence Scores 1.0 0.044328 CTCF_GM12872_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_HepG2_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null sw-480 cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.258917 colorectal cell line TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.067516 GSE169152_3_v_1_ibrutinib_human RummaGEO Drug Perturbation Signatures 1.0 null GSE145639_1_v_2_adar_human RummaGEO Gene Perturbation Signatures -1.0 null CTCFL_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_WI38_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null ZNF143_GM12878_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null T24_URINARY_TRACT CCLE Cell Line Proteomics 1.0 3.49258 ID-31-PA82_10uM NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles 1.0 0.247007 ZNF143_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null SP in midinferior temporal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.33978 preoptic region, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 2.21714 malignancies GeneRIF Biological Term Annotations 1.0 null GSE147876,GSE147877_2_v_10_enzalutamide_human RummaGEO Drug Perturbation Signatures -1.0 null bcell GeneRIF Biological Term Annotations 1.0 null GSE130956_2_v_1_icaritin_human RummaGEO Drug Perturbation Signatures 1.0 null Gonadal disease DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.88 PMC11769652-EHF2-12-250-s001.xlsx-Sheet1-ZEB1_ZEB1 Rummagene Transcription Factor Associations 2026 1.0 null CTCF_HepG2_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null bone cancer cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.073644 CTCF_MCF-7_hg19_7 ENCODE Transcription Factor Binding Site Profiles 1.0 null Gonocyte TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.303 Multiple myeloma DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.364 CTCF_pancreas_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_fibroblast of foreskin _hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null SPI1 ENCODE Transcription Factor Targets 1.0 null RCM-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.34543 interpositus (intermediate) nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.40008 HESX1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 14.8203 Hodgkin's lymphoma DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.446 cll/sll DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.778613 Synovial sarcoma DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.519 skeletal system TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.056546 NR2F2_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Brain Lower Grade Glioma_LGG_TCGA-P5-A733-01A-11R-A32Q-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null olfactory tubercle, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.45091 HCC1143 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.79027 SCABER CCLE Cell Line Gene CNV Profiles 1.0 1.73486 ZBTB33_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null plasma membrane part COMPARTMENTS Text-mining Protein Localization Evidence Scores 1.0 0.048212 abducens nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 2.05797 NUGC4 CCLE Cell Line Gene CNV Profiles 1.0 1.40185 Pheochromocytoma and Paraganglioma_PCPG_TCGA-SP-A6QF-01A-12R-A35L-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null CTCF_WI38_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Lung adenocarcinoma_LUAD_TCGA-69-7974-01A-11R-2187-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null GLIS3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 34.0894 SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE CCLE Cell Line Proteomics 1.0 3.80427 SCC-15 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.01505 gonocyte TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 1.00981 periaqueductal gray substance, ventral portion Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.08611 PAX5_GM12878_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_GM12869_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_GM12866_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null colon TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.083089 V Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.95607 CTCF_HepG2_hg19_5 ENCODE Transcription Factor Binding Site Profiles 1.0 null Pheochromocytoma and Paraganglioma_PCPG_TCGA-SR-A6MU-01A-11R-A35L-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null carcinoma DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.059721 EBF1_GM12878_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null KARPAS-1106P Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.84662 496100505_TCx_possible Alzheimer's disease_no TBI_90-94_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.03863 SPI1_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE206516,GSE206518_1_v_7_ptdss2_human RummaGEO Gene Perturbation Signatures -1.0 null receptor complex COMPARTMENTS Text-mining Protein Localization Evidence Scores 1.0 0.059841 testis TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 1.29489 CTCF_spleen_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null HCC193 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.72855 GSE183041_1_v_0_cisplatin_human RummaGEO Drug Perturbation Signatures 1.0 null Lymphoma DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.342 GLIS1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 36.6401 endocrine gland TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.603697 COV318 CCLE Cell Line Gene CNV Profiles -1.0 -2.00498 ELF1_HCT116_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null OSC-20 COSMIC Cell Line Gene Mutation Profiles 1.0 null IRF2 JASPAR Predicted Transcription Factor Targets 1.0 null C32TG Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.25245 Brain Lower Grade Glioma_LGG_TCGA-VM-A8CA-01A-11R-A36H-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null GSE149035_3_v_5_hepacam_human RummaGEO Gene Perturbation Signatures -1.0 null IRF4 ENCODE Transcription Factor Targets 1.0 null icSARS CoV_30Hour_None_GSE37827 GEO Signatures of Differentially Expressed Genes for Viral Infections -1.0 -1.48588 lateral hypothalamic area, anterior region, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.18049 Edinger-Westphal nucleus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.847894 intracellular part COMPARTMENTS Text-mining Protein Localization Evidence Scores 1.0 0.040657 Acute Myeloid Leukemia_LAML_TCGA-AB-2963-03A-01T-0734-13 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null IZ in caudal perirhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.24524 intracellular organelle COMPARTMENTS Text-mining Protein Localization Evidence Scores 1.0 0.044679 CTCF_A549_hg19_5 ENCODE Transcription Factor Binding Site Profiles 1.0 null ZNF85 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 22.7568 nutrition disease DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.063151 Spermatogonium TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.232 496100516_FWM_probable Alzheimer's disease_TBI_89_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.24557 VZ in caudal midinferior temporal cortex (area TF) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.886113 Sarcoma_SARC_TCGA-QQ-A5VC-01A-31R-A32Q-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null superior colliculus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.67963 midline nuclear complex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.80406 CTCF_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null VI, right, paravermis Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.967393 GSE74251_2_v_3_decitabine_human RummaGEO Drug Perturbation Signatures 1.0 null GSE142210_11_v_7_panobinostat_human RummaGEO Drug Perturbation Signatures 1.0 null CTCF_mammary epithelial cell_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null RMUG-S Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.03127 leukemia DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.074515 Malignant Neoplasm DisGeNET Gene-Disease Associations 1.0 null COLO 800 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.73135 H2AFZ_T-cell acute lymphoblastic leukemia_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null inferior occipital gyrus, right, superior bank of gyrus Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.73832 NR2F2 ENCODE Transcription Factor Targets 1.0 null Pheochromocytoma and Paraganglioma_PCPG_TCGA-QR-A70W-01A-12R-A35K-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null epithelium TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.054447 NCI-H1838 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.842467 GSE148657_2_v_1_cd44_human RummaGEO Gene Perturbation Signatures -1.0 null Intestinal cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.278 BEN CCLE Cell Line Gene CNV Profiles 1.0 1.45614 Perturb_2127_KO_SUMO2_SRP299611 PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 -20.0 USF1_HepG2_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null Brain Lower Grade Glioma_LGG_TCGA-VM-A8CD-01A-11R-A36H-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Brain Lower Grade Glioma_LGG_TCGA-DU-5870-02A-12R-A36H-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null mitral valve disease DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.363347 bone TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.064538 intestine TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.072864 PMC7021759-41467_2020_14682_MOESM10_ESM.xlsx-upregulated_genes-Table_S7_Upregulated_genes_in_SKNMM_and_U2OS_cells_with_MYCN_induction_MYCN Rummagene Transcription Factor Associations 2026 1.0 null GSE210101,GSE210114_0_v_3_urod_human RummaGEO Gene Perturbation Signatures -1.0 null progesterone-receptor negative breast cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.329 Thymic medulla TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.709 Kidney Chromophobe_KICH_TCGA-KO-8408-01A-11R-2315-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null RUNX2 JASPAR Predicted Transcription Factor Targets 1.0 null T-47D Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.842467 TYK-NU TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.394 CTCF_HCT116_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null IV Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.908807 Perturb_817_KO_BCL7A/BCL7B/BCL7C_SRP345839 PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 -20.0 Testicular cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.468 S0-EE-XMWH_10uM NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles 1.0 0.266806 layer VI of caudal entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.24926 SW 1573 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.47156 TCC-PAN2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.1881 lymphoblastic leukemia DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.101367 animal TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.482428 heart disease DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.071927 Malignant ovarian surface epithelial-stromal neoplasm DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.239 GSE223893_11_v_10_setd2_human RummaGEO Gene Perturbation Signatures 1.0 null KU1919_URINARY_TRACT CCLE Cell Line Proteomics 1.0 2.55233 disease of anatomical entity DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.041381 CTCF_GM12867_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE125014_1_v_3_enzalutamide_human RummaGEO Drug Perturbation Signatures -1.0 null Skin Cutaneous Melanoma_SKCM_TCGA-EE-A29T-06A-11R-A18T-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null PK-59 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.03127 Lung squamous cell carcinoma_LUSC_TCGA-18-3406-01A-01R-0980-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Pheochromocytoma and Paraganglioma_PCPG_TCGA-SP-A6QI-01A-12R-A35L-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Carcinogenesis DisGeNET Gene-Phenotype Associations 1.0 null DMS 273 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.901403 caudal subdivision of medial nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.882516 male reproductive system TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 1.00327 Ovarian Neoplasm DisGeNET Gene-Disease Associations 1.0 null GSE153443_1_v_3_decitabine_human RummaGEO Drug Perturbation Signatures 1.0 null Internal male genital organ TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 2.104 CTCF_lung_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null nucleus LOCATE Predicted Protein Localization Annotations 1.0 null autoimmune thrombocytopenic purpura DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.435275 subthalamic nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.15181 T24 CCLE Cell Line Gene CNV Profiles -1.0 -1.61222 CTCF_HL-60_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_MCF-7_hg19_6 ENCODE Transcription Factor Binding Site Profiles 1.0 null spinal cord TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.056704 Plant cell line TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.271 Brain Lower Grade Glioma_LGG_TCGA-IK-8125-01A-11R-2256-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null GSE216988,GSE216989_0_v_1_decitabine_human RummaGEO Drug Perturbation Signatures 1.0 null Disease DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.745 cervix uteri GTEx Tissue Gene Expression Profiles 1.0 0.824289 GSE138863_2_v_1_disulfiram_human RummaGEO Drug Perturbation Signatures 1.0 null CTCF_MCF-7_hg19_8 ENCODE Transcription Factor Binding Site Profiles 1.0 null EBC-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.889548 Liver cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.021 mantle cell lymphoma DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.266203 JHOS2 CCLE Cell Line Gene CNV Profiles 1.0 2.20946 autoimmune disease of blood DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.325187 nucleus accumbens, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.02522 496100643_TCx_no dementia_no TBI_90-94_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 4.68948 GSE240439_1_v_2_decitabine_human RummaGEO Drug Perturbation Signatures 1.0 null Pancreatic adenocarcinoma_PAAD_TCGA-H6-A45N-11A-12R-A26U-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null female reproductive gland TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.876129 fibroblastoma cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.2723 lymphomas GeneRIF Biological Term Annotations 1.0 null GABPA_HeLa-S3_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null NCIH82 CCLE Cell Line Gene CNV Profiles -1.0 -2.3514 Golgi cisterna membrane COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.946 Brain Lower Grade Glioma_LGG_TCGA-RY-A847-01A-11R-A36H-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null JHOS-4 COSMIC Cell Line Gene CNV Profiles -1.0 -5.12655 Brain Lower Grade Glioma_LGG_TCGA-FG-A87Q-01A-11R-A36H-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null MAFF JASPAR Predicted Human Transcription Factor Targets 2025 1.0 20.7078 496100570_HIP_no dementia_no TBI_78_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 3.48617 496100544_PCx_no dementia_no TBI_78_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.82662 CTCF_choroid plexus epithelial cell_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null NIH:OVCAR-3 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 2.41968 GSE175787_5_v_2_rhoc_human RummaGEO Gene Perturbation Signatures -1.0 null MZ in dorsomedial frontal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.5787 MYC_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null Lung squamous cell carcinoma_LUSC_TCGA-66-2777-01A-01R-1201-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null immune system cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.48893 Prostate adenocarcinoma_PRAD_TCGA-CH-5766-01A-11R-1580-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null thorax TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.236921 medial parabrachial nucleus, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.33938 teratoma DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.217352 PMC5352183-oncotarget-08-624-s006.xlsx-Table_S10-27_TP53-MSN_genes_concurrent_in_at_least_five_different_cancer_types_TP53 Rummagene Transcription Factor Associations 2026 1.0 null OVCAR-4 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.84487 496100369_PCx_no dementia_TBI_95-99_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 3.32835 Skin Cutaneous Melanoma_SKCM_TCGA-DA-A3F5-06A-11R-A20F-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null 496100384_HIP_no dementia_TBI_78_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 3.68966 NB1 COSMIC Cell Line Gene Mutation Profiles 1.0 null MOLM-16 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.17267 GSE161864,GSE161866_0_v_2_ror2_human RummaGEO Gene Perturbation Signatures 1.0 null frontal pole, left, inferior aspect Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.52868 CTCF_epithelial cell of proximal tubule_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-4493 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.880544 frontal pole, right, inferior aspect Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -2.37714 fibroblast cell line TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.074554 MKN-45 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.94859 SKNAS CCLE Cell Line Gene CNV Profiles -1.0 -2.20312 MDA-MB-436 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.1331 hsa-miR-3133 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.20993 CTCF_H1-hESC_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null Kidney renal papillary cell carcinoma_KIRP_TCGA-J7-8537-01A-11R-2404-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null SZ in subgenual cingulate cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.953448 Lung adenocarcinoma_LUAD_TCGA-50-5946-01A-11R-1755-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null GSE148657_3_v_0_cd44_human RummaGEO Gene Perturbation Signatures -1.0 null HEC-1-B cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.694 CTCF_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_BE2C_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null Brain Lower Grade Glioma_LGG_TCGA-DU-5872-01A-11R-1708-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null CTCF_K562_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null cell part LOCATE Predicted Protein Localization Annotations 1.0 null GSE238116_1_v_0_egr1_human RummaGEO Gene Perturbation Signatures 1.0 null GSE130956_0_v_3_icaritin_human RummaGEO Drug Perturbation Signatures -1.0 null seedling TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.065095 thymocyte TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.295297 hsa-miR-586 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.13535 GSE210101,GSE210114_5_v_10_urod_human RummaGEO Gene Perturbation Signatures 1.0 null MAX ENCODE Transcription Factor Targets 1.0 null Prostate adenocarcinoma_PRAD_TCGA-XQ-A8TA-01A-11R-A36G-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null substantia nigra, reticular part Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.936184 Head and Neck squamous cell carcinoma_HNSC_TCGA-CN-6023-01A-11R-1686-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null GSE161800_0_v_1_cisplatin_human RummaGEO Drug Perturbation Signatures 1.0 null HCC827 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.856637 b82 TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.588 MALME-3M cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.901 CTCF_endothelial cell of umbilical vein_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null lateral hypothalamic area, anterior region, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.32047 peripheral blood lymphocyte TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.344449 SNU-16 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.94859 intracellular membrane-bounded organelle GO Cellular Component Annotations 2025 1.0 null G121 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.1219 Bone marrow cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.34 496100554_FWM_no dementia_no TBI_78_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.96921 GSE147876,GSE147877_2_v_1_enzalutamide_human RummaGEO Drug Perturbation Signatures -1.0 null CTCF_HCT116_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_endothelial cell of umbilical vein_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null BRD4_01_119 KnockTF Gene Expression Profiles with Transcription Factor Perturbations 1.0 1.215 Skin Cutaneous Melanoma_SKCM_TCGA-BF-A3DM-01A-11R-A20F-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null gametocyte TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.179086 CTCF_A549_hg19_6 ENCODE Transcription Factor Binding Site Profiles 1.0 null Skin Cutaneous Melanoma_SKCM_TCGA-D3-A5GR-06A-11R-A27Q-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null present GeneRIF Biological Term Annotations 1.0 null hsa-miR-513a-3p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.07142 Ovarian epithelial cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.885 Acute Myeloid Leukemia_LAML_TCGA-AB-2900-03A-01T-0735-13 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Diffuse large B-cell lymphoma DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.057 NCIH2030 CCLE Cell Line Gene CNV Profiles 1.0 1.64789 tissues, cell types and enzyme sources TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.477367 VIIIA, left, paravermis Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.83595 Lung squamous cell carcinoma_LUSC_TCGA-63-A5MB-01A-11R-A26W-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null NCIH28 CCLE Cell Line Gene CNV Profiles 1.0 1.40105 CTCF_GM19240_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Bladder Urothelial Carcinoma_BLCA_TCGA-ZF-AA4T-01A-11R-A38B-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null CTCF_GM12872_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null Head and Neck squamous cell carcinoma_HNSC_TCGA-UF-A7JA-01A-12R-A34R-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null CTCF_GM12872_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null lung cancer cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.058979 lymphoid cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.312957 CTCF_GM12891_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null KOPN-8 COSMIC Cell Line Gene Mutation Profiles 1.0 null among GeneRIF Biological Term Annotations 1.0 null Brain Lower Grade Glioma_LGG_TCGA-CS-6290-01A-11R-1708-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null CTCF_A549_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE193258,GSE193259_2_v_8_osimertinib_human RummaGEO Drug Perturbation Signatures 1.0 null Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-6937-01A-11R-2016-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null JC-06-ED36_10uM NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles 1.0 0.282225 ZNF417 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 31.3964 medial preoptic nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.34396 Hypertrophic cardiomyopathy 13 DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.375 cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.596792 A549 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.841721 GSE235701,GSE261434_0_v_1_enasidenib_human RummaGEO Drug Perturbation Signatures 1.0 null Primary spermatocyte TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.207 Head and Neck squamous cell carcinoma_HNSC_TCGA-UF-A71A-01A-22R-A34R-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Bladder Urothelial Carcinoma_BLCA_TCGA-DK-A3IN-01A-11R-A20F-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null organelle LOCATE Predicted Protein Localization Annotations 1.0 null ME-180 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.946146 intracellular organelle LOCATE Predicted Protein Localization Annotations 1.0 null CBX3_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null inner SZ in posterior parahippocampal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.894864 POLR2G_02_130 KnockTF Gene Expression Profiles with Transcription Factor Perturbations -1.0 -0.59068 Pheochromocytoma and Paraganglioma_PCPG_TCGA-SR-A6MS-01A-11R-A35L-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null SF268 CCLE Cell Line Gene CNV Profiles -1.0 -1.45462 nervous system cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.044805 Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-EK-A2IR-01A-11R-A180-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null KMRC1 CCLE Cell Line Gene CNV Profiles 1.0 1.5015 pyramidal cells of rostral CA4 Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.897991 iron deficiency anemia DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.273308 ZD-18-MI26_10uM NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles 1.0 0.30801 DOR 13 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.826765 adenocarcinoma cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.05922 rostral part of entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.28302 Disease of cellular proliferation DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.888 rectal cell line TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.065343 CTCF_fibroblast of mammary gland_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Respiratory system cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.499 Lower respiratory tract disease DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.403 GSE133516_5_v_3_kat7_human RummaGEO Gene Perturbation Signatures -1.0 null CTCF_GM12868_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Musculoskeletal system cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.18 inferior occipital gyrus, right, inferior bank of gyrus Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.65922 NCIH727 CCLE Cell Line Gene CNV Profiles -1.0 -1.8646 Intraciliary transport particle COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.661 MHC protein complex COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.893 Ovary epithelium cell line TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.898 CTCF_GM12874_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null AA-11-RO46_10uM NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles 1.0 0.207039 CTCF_A549_hg19_7 ENCODE Transcription Factor Binding Site Profiles 1.0 null medioventral part of putamen Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.5565 NCI-H1651 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.964845 hypoglossal nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.991522 Testis TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 2.341 ONCODG1 CCLE Cell Line Gene CNV Profiles 1.0 2.08363 CBX3 ENCODE Transcription Factor Targets 1.0 null non-Hodgkin lymphoma DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.178 Ovarian cyst fluid TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.685 rectal cancer cell line TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.065734 Lung adenocarcinoma_LUAD_TCGA-78-8640-01A-11R-2403-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null GSE181003_1_v_0_selinexor_human RummaGEO Drug Perturbation Signatures 1.0 null ISTMES1 CCLE Cell Line Gene CNV Profiles -1.0 -1.45783 spermatocyte TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.543359 cellular_component COMPARTMENTS Text-mining Protein Localization Evidence Scores 1.0 0.041617 CTCF_GM19239_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null bed nucleus of stria terminalis, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.877063 Rectum adenocarcinoma_READ_TCGA-EI-6513-01A-21R-1736-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null PMC5055179-CAM4-5-2522-s008.xlsx-S1-Supplementary_Table_S1_Properties_of_genes_upregulated_by_MBD-TET1-CDwt_TET1 Rummagene Transcription Factor Associations 2026 1.0 null U-2 OS Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.08231 Prostate adenocarcinoma_PRAD_TCGA-V1-A8WW-01A-11R-A37L-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Cystadenocarcinoma DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.285 GSE242367_1_v_0_dpp9_human RummaGEO Gene Perturbation Signatures -1.0 null Cell type cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.742 Pancreatic adenocarcinoma_PAAD_TCGA-F2-A44H-01A-11R-A26U-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null GSE151612_0_v_8_pracinostat_human RummaGEO Drug Perturbation Signatures 1.0 null gastrointestinal tract TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.065214 Survivin complex COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 1.155 496100439_PCx_no dementia_no TBI_95-99_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.5655 GSE172494_3_v_1_nicotinamide_human RummaGEO Drug Perturbation Signatures -1.0 null intracellular membrane-bounded organelle LOCATE Predicted Protein Localization Annotations 1.0 null Brain Lower Grade Glioma_LGG_TCGA-VM-A8CB-01A-11R-A36H-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null epithelial cell line TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.052276 HCC38 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.22471 Lung squamous cell carcinoma_LUSC_TCGA-46-3768-01A-01R-0980-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null lung adenocarcinoma cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.416957 GSE153871_1_v_3_cytarabine_human RummaGEO Drug Perturbation Signatures 1.0 null musculoskeletal system cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.042876 GSE238116_3_v_2_egr1_human RummaGEO Gene Perturbation Signatures -1.0 null Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-JW-A5VL-01A-11R-A28H-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Oviduct TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.366 POLR2AphosphoS5_H1-hESC_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE142588_2_v_1_cinobufagin_human RummaGEO Drug Perturbation Signatures -1.0 null Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-7424-01A-11R-2081-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null SPI1_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null mononuclear cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.07137 CTCF_T-cell acute lymphoblastic leukemia_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null SG in caudal entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 2.35348 Malignant adenoma DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.28 CTCFL_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Germ cell cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.316 ZNF76 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 27.8328 Macrolide transmembrane transporter complex COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.582 female reproductive system TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.77774 muscular system TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.059368 RUNX3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 23.2664 Skin Cutaneous Melanoma_SKCM_TCGA-D3-A2JO-06A-11R-A18S-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null lung TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.054538 Lung squamous cell carcinoma_LUSC_TCGA-22-0940-01A-01R-0692-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Hypogonadotropic hypogonadism 14 with or without anosmia DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.212 CTCF_SK-N-SH_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null PBX3_GM12878_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null Brain Lower Grade Glioma_LGG_TCGA-P5-A730-01A-11R-A32Q-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null GSE147876,GSE147877_2_v_5_enzalutamide_human RummaGEO Drug Perturbation Signatures -1.0 null central nervous system TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.051522 CTCF_fibroblast of mammary gland_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_A549_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null Rootlet TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.781 BICR6 CCLE Cell Line Gene CNV Profiles -1.0 -1.51869 BC3C CCLE Cell Line Gene CNV Profiles -1.0 -1.63545 Lung squamous cell carcinoma_LUSC_TCGA-21-1083-01A-01R-0692-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Bladder Urothelial Carcinoma_BLCA_TCGA-FD-A5BS-01A-21R-A26T-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null central nervous system lymphoma DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.674713 GSE147366_3_v_2_med13_human RummaGEO Gene Perturbation Signatures -1.0 null CTCF_astrocyte of the spinal cord_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_HeLa-S3_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_GM19238_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Lung squamous cell carcinoma_LUSC_TCGA-34-5236-01A-21R-1820-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null GSE125014_6_v_4_enzalutamide_human RummaGEO Drug Perturbation Signatures -1.0 null USF1 ENCODE Transcription Factor Targets 1.0 null Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-7429-01A-11R-2132-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null CTCF_WERI-Rb-1_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE193258,GSE193259_5_v_1_osimertinib_human RummaGEO Drug Perturbation Signatures 1.0 null CTCF_GM12864_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE138863_3_v_1_disulfiram_human RummaGEO Drug Perturbation Signatures 1.0 null Myeloid neoplasm DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.306 HCC1569 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.13583 CTCF_fibroblast of the aortic adventitia_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null OV7 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.826765 bone marrow cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.176485 PMC7921413-41467_2021_21650_MOESM5_ESM.xlsx-002_DE-CD34_Blasts_AP1_low_JUN Rummagene Transcription Factor Associations 2026 1.0 null ventral medial nucleus of thalamus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.957013 CTCF_MCF-7_hg19_9 ENCODE Transcription Factor Binding Site Profiles 1.0 null ZR751 CCLE Cell Line Gene CNV Profiles -1.0 -1.67875 raphe obscurus nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.05804 lowgrade GeneRIF Biological Term Annotations 1.0 null GSE206516,GSE206518_6_v_4_ptdss2_human RummaGEO Gene Perturbation Signatures -1.0 null intracellular membrane-bounded organelle COMPARTMENTS Text-mining Protein Localization Evidence Scores 1.0 0.190175 hodgkin's lymphoma DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.791311 EFM-192A Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.34454 CTCF_A549_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null 59m TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.629 Plantlet TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.967 DMS454 CCLE Cell Line Gene CNV Profiles -1.0 -1.35166 CTCF_GM12866_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE226770_1_v_0_atrx_human RummaGEO Gene Perturbation Signatures 1.0 null CTCF_MCF-7_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_HEK293_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null SW1573 CCLE Cell Line Gene CNV Profiles -1.0 -1.33164 CTCF_K562_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-A6JM-01A-11R-A31N-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null cingulate gyrus, retrosplenial part, right, superior bank of gyrus Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.98876 Central nervous system germinoma DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.137 CTCF_ECC-1_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Autosome COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 1.027 t-lymphocyte TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.11634 Ovary epithelium TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.507 thoracic cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.204263 496100314_HIP_no dementia_TBI_90-94_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 4.89003 Skin Cutaneous Melanoma_SKCM_TCGA-D3-A1Q4-06A-11R-A18T-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null b cell receptor complex COMPARTMENTS Text-mining Protein Localization Evidence Scores 1.0 0.441708 acquired metabolic disease DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.048073 VIIB Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.879685 SG in temporal polar cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.73593 Head and Neck squamous cell carcinoma_HNSC_TCGA-HD-A634-01A-11R-A28V-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null brain TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.051567 CTCF_GM10248_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_GM12873_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_GM12865_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null Ovarian surface epithelium TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.401 PANC 02.03 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.17267 superficial layers of olfactory entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.56522 SG in dorsomedial parietal cortex (area 7m) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.89625 rectum TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.117019 CTCF_HepG2_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_H1-hESC_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null SPI1_GM12878_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null Lung adenocarcinoma_LUAD_TCGA-69-8255-01A-11R-2287-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null GSE206516,GSE206518_3_v_7_ptdss2_human RummaGEO Gene Perturbation Signatures 1.0 null Thymic stromal cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.695 GSE145639_1_v_6_adar_human RummaGEO Gene Perturbation Signatures -1.0 null Acute Myeloid Leukemia_LAML_TCGA-AB-2985-03A-01T-0734-13 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null PMC11063202-41420_2024_1940_MOESM2_ESM.xlsx-THP1-EP300_KOvsNontarget-gene_name_GLI2 Rummagene Transcription Factor Associations 2026 1.0 null GSE168797_2_v_0_cannabidiol_human RummaGEO Drug Perturbation Signatures 1.0 null Uterine Carcinosarcoma_UCS_TCGA-QN-A5NN-01A-11R-A28V-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null CTCF_bronchial epithelial cell_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null BCPAP CCLE Cell Line Gene CNV Profiles -1.0 -1.5472 GSE125014_1_v_4_enzalutamide_human RummaGEO Drug Perturbation Signatures -1.0 null hematopoietic system disease DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.049145 Lung adenocarcinoma_LUAD_TCGA-38-4631-01A-01R-1755-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Ovarian cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.868 BD-11-DV28_10uM NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles 1.0 0.231706 MAFA JASPAR Predicted Human Transcription Factor Targets 2025 1.0 29.2651 Lung squamous cell carcinoma_LUSC_TCGA-66-2768-01A-01R-0851-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null OPM-2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.17267 UM-UC-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.841721 HCC38 CCLE Cell Line Gene CNV Profiles 1.0 2.59966 CTCF_fibroblast of the aortic adventitia_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null NCI-H1975 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.841721 Kidney renal papillary cell carcinoma_KIRP_TCGA-BQ-5891-01A-11R-1592-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Gastrointestinal system disease DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.319 nucleus accumbens, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.876916 POU2F2_GM12878_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_BE2C_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null PBX1 ChEA Transcription Factor Targets 1.0 null NCIH146 CCLE Cell Line Gene CNV Profiles -1.0 -2.09164 Ovary cancer cell line TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.386 E2F7 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 27.8863 all GeneRIF Biological Term Annotations 1.0 null GSE206516,GSE206518_2_v_7_ptdss2_human RummaGEO Gene Perturbation Signatures -1.0 null layer III of rostral entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.995272 Seminoma DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.591 CTCF_GM06990_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null inferior olive, medial nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -2.3014 tested GeneRIF Biological Term Annotations 1.0 null Lung squamous cell carcinoma_LUSC_TCGA-56-8307-01A-11R-2296-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Hematologic cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.488 OCUM-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.26623 RPS20 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.51368 Reproductive system disease DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.81 Lung cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.509 Skin Cutaneous Melanoma_SKCM_TCGA-ER-A19T-01A-11R-A18T-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null GSE151612_4_v_8_pracinostat_human RummaGEO Drug Perturbation Signatures 1.0 null medial parabrachial nucleus,right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.30511 follicular thyroid carcinoma DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.200331 HCC1187 CCLE Cell Line Gene CNV Profiles -1.0 -1.34689 Male reproductive system disease DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.276 NCIH1648 CCLE Cell Line Gene CNV Profiles -1.0 -1.71531 Acute Myeloid Leukemia_LAML_TCGA-AB-2924-03A-01T-0740-13 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null spermatogonium TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.215341 Pheochromocytoma and Paraganglioma_PCPG_TCGA-RW-A680-01A-11R-A35K-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null gland TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.565232 macromolecular complex COMPARTMENTS Text-mining Protein Localization Evidence Scores 1.0 0.041835 Thymic medullary epithelial cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.805 membrane-bounded organelle COMPARTMENTS Text-mining Protein Localization Evidence Scores 1.0 0.190175 Brain Lower Grade Glioma_LGG_TCGA-DU-7019-01A-11R-2027-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null subcuneiform nucleus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.881405 MCM8-MCM9 complex COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 1.304 EFNB2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.38046 Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-7406-01A-11R-2081-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null NCI-H292 cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.664 624 MEL Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.68817 MAF JASPAR Predicted Human Transcription Factor Targets 2025 1.0 29.2702 CTCF_HCT116_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE210662_2_v_1_znf165_human RummaGEO Gene Perturbation Signatures 1.0 null Lung squamous cell carcinoma_LUSC_TCGA-37-5819-01A-01R-1635-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null trochlear nucleus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.54867 cochlear nuclei, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.885129 RARG JASPAR Predicted Human Transcription Factor Targets 2025 1.0 23.7757 SNAI1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 22.9895 CTCF_A549_hg19_9 ENCODE Transcription Factor Binding Site Profiles 1.0 null Prostate cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.078 central nervous system cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.048666 non-small cell lung cancer cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.067886 polymorphic layer of rostral subiculum Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.825277 CTCF_K562_hg19_5 ENCODE Transcription Factor Binding Site Profiles 1.0 null KP-2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.25484 leaf TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.067521 colonic adenocarcinoma cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.415053 SKHEP1_LIVER CCLE Cell Line Proteomics 1.0 6.59203 GSE134896_0_v_7_progesterone_human RummaGEO Drug Perturbation Signatures -1.0 null outer SZ in ventrolateral prefrontal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.963974 Carcinoma Of Lung DisGeNET Gene-Disease Associations 1.0 null Liver carcinoma DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.019 inner SZ in midlateral temporal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.3525 germ cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.711729 BT20 CCLE Cell Line Gene CNV Profiles 1.0 1.68845 rostral subdivision of medial nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.955328 MAX_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null AM-38 COSMIC Cell Line Gene Mutation Profiles 1.0 null lateral parabrachial nucleus, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.35804 Head and Neck squamous cell carcinoma_HNSC_TCGA-CN-6022-01A-21R-1686-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null SCRT1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 28.0857 IV, right, paravermis Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.06318 CTCF_GM12878_hg19_5 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_IMR-90_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null NCI-H1299 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.915653 FOSL2 ENCODE Transcription Factor Targets 1.0 null ZNF136 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 18.5926 COLO 794 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.888051 whole body TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.483986 hematopoietic system TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.252919 CTCF_H1-hESC_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null nucleus GO Cellular Component Annotations 2025 1.0 null Edinger-Westphal nucleus (accessory oculomotor nucleus) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.57257 germ cell cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.198064 semen TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.189015 Pheochromocytoma and Paraganglioma_PCPG_TCGA-WB-A81K-01A-11R-A35L-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Uterine cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.228 Brain Lower Grade Glioma_LGG_TCGA-HT-7483-01A-11R-2027-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null oculomotor nuclear complex, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 2.10589 periventricular nucleus, preoptic portion Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.84278 496100584_HIP_probable Alzheimer's disease_no TBI_95-99_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.55008 stratum pyramidale of caudal CA2 Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.13825 nucleus COMPARTMENTS Text-mining Protein Localization Evidence Scores 1.0 0.287352 Skin Cutaneous Melanoma_SKCM_TCGA-D3-A3C3-06A-12R-A18S-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Lung squamous cell carcinoma_LUSC_TCGA-66-2766-01A-01R-0851-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null connective tissue TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.05883 16455954-TableS1 GeneSigDB Published Gene Signatures 1.0 null OVCA-5 cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.821 angular gyrus, right, inferior bank of gyrus Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.853326 disease DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.517649 karpas707 HPA Cell Line Gene Expression Profiles 1.0 0.885729 fibroblast TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.089145 frontal pole, left, medial aspect Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.33956 AKAP9 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.11739 EWSR1_02_167 KnockTF Gene Expression Profiles with Transcription Factor Perturbations -1.0 -0.59309 ZBTB33 ENCODE Transcription Factor Targets 1.0 null USF1_A549_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null oncogenesis GeneRIF Biological Term Annotations 1.0 null sarcoma cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.092586 TMEM88B_KD_GPL10558_471_human_cardiovascular progenitors cells differentiated from hES cells GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null CTCF_B cell_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null SPIB JASPAR Predicted Human Transcription Factor Targets 2025 1.0 46.5423 Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4985-01A-01R-1334-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null superior colliculus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.84245 CTCF_fibroblast of lung_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null large GeneRIF Biological Term Annotations 1.0 null skeletal muscle cancer cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.090246 KE39 CCLE Cell Line Gene CNV Profiles 1.0 1.3512 Breast cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.597 posterior hypothalamic area, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.14259 496100392_HIP_dementia_TBI_90-94_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.42317 u26684 HPA Cell Line Gene Expression Profiles 1.0 1.08345 TRPS1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 29.8373 hodgkin's lymphoma, mixed cellularity DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 1.08747 pre-t-lymphocyte TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.292436 protooncogene GeneRIF Biological Term Annotations 1.0 null fibrosarcoma cell line TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.295297 Head and Neck squamous cell carcinoma_HNSC_TCGA-IQ-A61H-01A-11R-A30B-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null DD-75-HY40_10uM NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles 1.0 0.486294 MYC ENCODE Transcription Factor Targets 1.0 null Liver hepatocellular carcinoma_LIHC_TCGA-ED-A7PZ-01A-11R-A33R-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null RERF-LC-KJ Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.842467 Lung adenocarcinoma_LUAD_TCGA-53-7624-01A-11R-2066-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null lymphoma DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.571107 NCIH1781 CCLE Cell Line Gene CNV Profiles 1.0 1.38814 Epithelial Ovarian Cancer DisGeNET Gene-Disease Associations 1.0 null GSE145990_1_v_0_ibrutinib_human RummaGEO Drug Perturbation Signatures -1.0 null HUH7 CCLE Cell Line Gene CNV Profiles -1.0 -2.59447 metastasis GeneRIF Biological Term Annotations 1.0 null LOU-NH91 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.03907 Brain Lower Grade Glioma_LGG_TCGA-TM-A7C4-01A-11R-A32Q-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null agranular insular cortex (area Iag) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.02754 medial portion of STH Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.970556 GSE147366_1_v_4_med13_human RummaGEO Gene Perturbation Signatures -1.0 null colorectal cancer cell line TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.068023 brain GTEx Tissue Gene Expression Profiles 1.0 1.28613 GSE74251_0_v_3_decitabine_human RummaGEO Drug Perturbation Signatures 1.0 null IZ in primary somatosensory cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.915689 Organ system cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.879 chronic lymphocytic leukemia DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.134514 Pancreatic adenocarcinoma_PAAD_TCGA-H6-8124-11A-01R-2404-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null GSE239844_7_v_0_crizotinib_human RummaGEO Drug Perturbation Signatures -1.0 null EFO21 CCLE Cell Line Gene CNV Profiles 1.0 1.35407 CTCF_A549_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null VI, right, lateral hemisphere Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.06143 GSE210101,GSE210114_8_v_10_urod_human RummaGEO Gene Perturbation Signatures 1.0 null MAX_K562_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null SW 403 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.55425 Mesothelioma_MESO_TCGA-MQ-A4LJ-01A-11R-A34F-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-FF-8041-01A-11R-2213-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null SCRT2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 21.2034 magnocellular (medial) division of MD Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.48779 Ovarian surface epithelial cell line TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.966 hsa-miR-4768-5p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.55165 thymus TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.263669 ZNF180_02_177 KnockTF Gene Expression Profiles with Transcription Factor Perturbations -1.0 -0.61616 Reproductive organ cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.845 SW 780 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.871845 CTCF_fibroblast of foreskin _hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_GM12878_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_GM12875_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null NCI-H596 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.01426 CTCF_HeLa-S3_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null VIIIA, right, lateral hemisphere Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.55423 Lung squamous cell carcinoma_LUSC_TCGA-46-3765-01A-01R-0980-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null hypocotyl TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.06622 outer CP in ventrolateral prefrontal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.975576 PBX1-22567123-OVCAR3-HUMAN ChEA Transcription Factor Binding Site Profiles 1.0 null inferior olive, dorsal nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.08611 anterior hypothalamic area, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.18763 NUGC2 CCLE Cell Line Gene CNV Profiles 1.0 1.85301 Lymphatic system disease DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.337 Lung squamous cell carcinoma_LUSC_TCGA-22-4613-01A-01R-1443-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null CTCF_GM12871_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null Melanoma DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.593 rosette TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.598469 Breast disease DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.603 Thymic cortex TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.726 VZ in caudal entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.902779 CTCF_fibroblast of pedal digit skin_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null preoptic region, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 2.15345 HCC1143 CCLE Cell Line Gene CNV Profiles 1.0 1.82689 Lung squamous cell carcinoma_LUSC_TCGA-56-7223-01A-11R-2045-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null colonic adenocarcinoma cell line TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.078648 LN-229 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.826765 peripheral blood mononuclear cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.139545 ELF1_HepG2_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null Ovary epithelial cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.618 CTCF_MCF-7_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null deep layers of rostral entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.06328 496100446_TCx_no dementia_no TBI_95-99_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.1451 sarcoma cell line TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.096356 lateral orbital frontal cortex (area 12/47) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.61375 Xcp TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.553 subgenual (subcallosal) division of MFC (area 25) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.90622 E2F6 ENCODE Transcription Factor Targets 1.0 null CTCF_skeletal muscle myoblast_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_GM10266_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-DS-A1OC-01A-11R-A14Y-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null overexpression GeneRIF Biological Term Annotations 1.0 null pituitary GTEx Tissue Gene Expression Profiles 1.0 1.49012 A549_LUNG CCLE Cell Line Proteomics 1.0 3.61377 GSE169152_3_v_7_ibrutinib_human RummaGEO Drug Perturbation Signatures 1.0 null head of caudate nucleus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.857281 CTCF_MCF-7_hg19_5 ENCODE Transcription Factor Binding Site Profiles 1.0 null OVCA 420 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.856637 Sarcoma DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.033 PMC11192681-11033_2024_9703_MOESM1_ESM.xlsx-common_ZFPs-C2H2-ZNF_genes_commonly_appearing_as_DEGs_WT_vs_SETDB1_KO_cells_in_HAP1_and_293T_cells_SETDB1 Rummagene Transcription Factor Associations 2026 1.0 null 496100672_FWM_no dementia_no TBI_90-94_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 3.43654 Thoracic cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.596 Adrenocortical carcinoma_ACC_TCGA-OR-A5K5-01A-11R-A29S-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null RAD21 ENCODE Transcription Factor Targets 1.0 null CTCF_endothelial cell of umbilical vein_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null midbrain reticular formation, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.1471 SG in primary auditory cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.837631 diffuse GeneRIF Biological Term Annotations 1.0 null GSE125014_6_v_3_enzalutamide_human RummaGEO Drug Perturbation Signatures -1.0 null GSE206516,GSE206518_6_v_7_ptdss2_human RummaGEO Gene Perturbation Signatures -1.0 null E2F4 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 15.4493 Uterine disease DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.209 GSE175787_5_v_6_rhoc_human RummaGEO Gene Perturbation Signatures -1.0 null MZ in posterior parahippocampal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.15066 medial mammillary nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.836289 IOSE cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.507 PMC11061611-cd-23-0857_table_s4_suppst4.xlsx-Epithelial_F1-pEpi11_FU1_shared_B_ASCL1_ASCL1 Rummagene Transcription Factor Associations 2026 1.0 null corpus callosum Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.47955 Skin Cutaneous Melanoma_SKCM_TCGA-EE-A2MC-06A-12R-A18S-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null WM1799_SKIN CCLE Cell Line Proteomics 1.0 2.99755 FOXA1 JASPAR Predicted Transcription Factor Targets 1.0 null Lung adenocarcinoma_LUAD_TCGA-05-4424-01A-22R-1858-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null paraventricular nucleus of the hypothalamus, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.929855 VZ in orbital frontal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.841251 X, left, lateral hemisphere Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.83336 Skin Cutaneous Melanoma_SKCM_TCGA-EE-A3AG-06A-31R-A18S-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null GSE206516,GSE206518_2_v_4_ptdss2_human RummaGEO Gene Perturbation Signatures -1.0 null Adenocarcinoma DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.33 TBXT JASPAR Predicted Human Transcription Factor Targets 2025 1.0 35.4851 Cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.886 Intraciliary transport particle B COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.787 Seminoma DisGeNET Gene-Disease Associations 1.0 null E2F1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 21.6605 CTCF_LNCaP clone FGC_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE133516_0_v_3_kat7_human RummaGEO Gene Perturbation Signatures -1.0 null Brain Lower Grade Glioma_LGG_TCGA-HT-8015-01B-11R-A28M-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null X, left, paravermis Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.34333 A204_SOFT_TISSUE CCLE Cell Line Proteomics 1.0 4.21498 ELF1 ENCODE Transcription Factor Targets 1.0 null Hodgkin's lymphoma, mixed cellularity DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.627 12687021-Table2 GeneSigDB Published Gene Signatures 1.0 null Transfer cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.618 CTCF_skin fibroblast_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null STAT1::STAT2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 91.4306 colorectal adenocarcinoma cell line TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.072565 GSE242367_1_v_0_sorafenib_human RummaGEO Drug Perturbation Signatures -1.0 null MG-63 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.18894 LMSU CCLE Cell Line Gene CNV Profiles 1.0 1.41915 Pheochromocytoma and Paraganglioma_PCPG_TCGA-SR-A6MR-01A-11R-A35L-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null thyroid carcinoma DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.096911 lateral parabrachial nucleus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.67047 PK-8 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.47328 CTCF_GM12868_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null MAX_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null efo21 TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.576 ct96 TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.969 superior parietal lobule, right, inferior bank of gyrus Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.16308 Carcinoma DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.687 Lung adenocarcinoma_LUAD_TCGA-44-7660-01A-11R-2066-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null myeloma DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.189859 GSS CCLE Cell Line Gene CNV Profiles -1.0 -1.40287 Immune system disease DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.179 Serous cystadenocarcinoma DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.304 adenocarcinoma cell line TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.055321 abducens nucleus, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.55749 Pancreatic adenocarcinoma_PAAD_TCGA-IB-AAUT-01A-11R-A37L-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null CTCF_GM06990_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_GM12865_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null RFX7 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 15.6895 Intestinal disease DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.218 ELF1_HepG2_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null male reproductive gland TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 1.07706 CTCF_HeLa-S3_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null RRP9 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.32243 highest GeneRIF Biological Term Annotations 1.0 null REH CCLE Cell Line Gene CNV Profiles 1.0 1.77513 Hematopoietic system disease DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.416 Myoblastoma DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.309 viscus TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.054165 KP-3 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.841721 Gastrointestinal system cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.415 nutritional deficiency disease DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.072402 GSE181003_3_v_2_selinexor_human RummaGEO Drug Perturbation Signatures -1.0 null lymphoid tissue TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.334498 NCI-H1435 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.03127 Lymphatic system cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.341 CTCF_SK-N-SH_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null RBM34_02_141 KnockTF Gene Expression Profiles with Transcription Factor Perturbations -1.0 -0.66183 GABPA ENCODE Transcription Factor Targets 1.0 null CP in midlateral temporal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.42375 primary spermatocyte TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.939636 inferior colliculus, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.10891 GSE224599_0_v_1_tfcp2_human RummaGEO Gene Perturbation Signatures 1.0 null subparafascicular nucleus of thalamus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.958155 TMEM88_KD_GSE43805_682_human_hES cells differentiated along the cardiac lineage GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null Pheochromocytoma and Paraganglioma_PCPG_TCGA-QR-A6GY-01A-11R-A35K-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null TE14_OESOPHAGUS CCLE Cell Line Proteomics 1.0 2.07941 CAPAN1 CCLE Cell Line Gene CNV Profiles -1.0 -1.42227 lymphoma GeneRIF Biological Term Annotations 1.0 null Lung carcinoma DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.168 Malignant cystadenoma DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.285 Female reproductive system disease DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.811 reuniens nucleus (medioventral nucleus) of thalamus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.835234 Prostate adenocarcinoma_PRAD_TCGA-J9-A52B-01A-11R-A26U-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null gray zone lymphoma DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 1.29789 Bladder Urothelial Carcinoma_BLCA_TCGA-H4-A2HQ-01A-11R-A180-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null ZNF14 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.33804 SKES1 CCLE Cell Line Gene CNV Profiles 1.0 1.58706 Carcinoma, Ovarian Epithelial DisGeNET Gene-Disease Associations 1.0 null blood TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.222699 HES6 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 20.1416 Perturb_2126_KO_SUMO1_SRP299611 PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 -20.0 GSE169152_3_v_2_ibrutinib_human RummaGEO Drug Perturbation Signatures 1.0 null RXRA ENCODE Transcription Factor Targets 1.0 null Gray zone lymphoma DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.563 lateral habenular nucleus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.94963 carcinoma cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.058881 Esophagus - Gastroesophageal Junction GTEx Tissue Gene Expression Profiles 2023 1.0 7.19721 germinoma DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.657234 Kidney renal clear cell carcinoma_KIRC_TCGA-CJ-6027-01A-11R-1672-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null multiple myeloma DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.286519 CTCF_NB4_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null BHT101 CCLE Cell Line Gene CNV Profiles 1.0 1.55036 cartilage TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.080531 seed TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.062621 UACC-812 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 2.24428 superior rostral gyrus, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.0468 Sarcoma_SARC_TCGA-SI-A71Q-01A-12R-A33J-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Lung squamous cell carcinoma_LUSC_TCGA-O2-A52N-01A-11R-A26W-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null VIIIB Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.00252 VZ in thalamic region Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.1089 PANC 05.04 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.871114 Squamous cell carcinoma DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.243 GSE210101,GSE210114_11_v_10_urod_human RummaGEO Gene Perturbation Signatures 1.0 null CTCF_medulloblastoma_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Skin Cutaneous Melanoma_SKCM_TCGA-DA-A1I8-06A-11R-A18T-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null MZ in temporal polar cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.999718 immunoglobulin complex COMPARTMENTS Text-mining Protein Localization Evidence Scores 1.0 0.311851 CTCF_GM12873_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null HSF1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 17.7889 ZR-75-30 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.826765 colorectal cancer cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.067035 496100312_HIP_possible Alzheimer's disease_no TBI_90-94_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 3.33548 RAD21_H1-hESC_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null OVCAR4_OVARY CCLE Cell Line Proteomics 1.0 2.20771 protein complex COMPARTMENTS Text-mining Protein Localization Evidence Scores 1.0 0.042146 Brain Lower Grade Glioma_LGG_TCGA-HW-7490-01A-11R-2027-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null DMS 454 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.915653 Oc cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.276 anemia DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.071064 hmc1 HPA Cell Line Gene Expression Profiles 1.0 0.954333 CTCF_H1-hESC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null choroid plexus of the lateral ventricle Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.03375 CTCF_GM20000_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null zona incerta Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.72338 cerebral white matter TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.358919 Lung non-small cell carcinoma DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.162 yolk sac TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.25259 Lung squamous cell carcinoma_LUSC_TCGA-56-8305-01A-11R-2296-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null EBF1 ENCODE Transcription Factor Targets 1.0 null f2 TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.503 FOSL2_HepG2_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Female reproductive organ cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.853 Lung squamous cell carcinoma_LUSC_TCGA-60-2726-01A-01R-0851-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null spermatocytoma DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 1.31537 fibrosarcoma DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.200656 OVCA 429 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.978315 inner CP in subgenual (subcallosal) cingulate cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.958424 Crus I, right, paravermis Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.864098 CTCF_HGPS cell_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null urogenital system TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.635976 Hepatobiliary system cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.045 Bladder Urothelial Carcinoma_BLCA_TCGA-GU-A42P-01A-11R-A23W-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null HCC1428 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.07523 CTCF_keratinocyte_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_brain microvascular endothelial cell_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE116810_5_v_1_selinexor_human RummaGEO Drug Perturbation Signatures -1.0 null 496100320_PCx_no dementia_TBI_79_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.87535 plant TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.053932 GSE223893_1_v_9_setd2_human RummaGEO Gene Perturbation Signatures -1.0 null ZNF24 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 187.63 GSE193258,GSE193259_2_v_1_osimertinib_human RummaGEO Drug Perturbation Signatures 1.0 null Breast Carcinoma DisGeNET Gene-Disease Associations 1.0 null A172_CENTRAL_NERVOUS_SYSTEM CCLE Cell Line Proteomics 1.0 5.35887 GSE226770_1_v_6_atrx_human RummaGEO Gene Perturbation Signatures 1.0 null IX Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.876082 Head and Neck squamous cell carcinoma_HNSC_TCGA-UF-A7JD-01A-11R-A34R-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Large intestine cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.28 ZNF75A JASPAR Predicted Human Transcription Factor Targets 2025 1.0 31.7986 cardiovascular system disease DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.047711 Brain Lower Grade Glioma_LGG_TCGA-S9-A6U0-01A-12R-A32Q-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null 496100349_HIP_no dementia_no TBI_78_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.6172 Bladder Urothelial Carcinoma_BLCA_TCGA-GD-A3OS-01A-12R-A220-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null hsa-miR-4279 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.20993 SP1 ENCODE Transcription Factor Targets 1.0 null fibrosarcoma cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.273696 Synovium cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.519 GSE135030_8_v_10_fludarabine_human RummaGEO Drug Perturbation Signatures 1.0 null Megasporocyte nucleus COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.79 IX, right, paravermis Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.881019 Crus II, right, lateral hemisphere Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.913717 CTCF_HeLa-S3_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null HT-55 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.94859 occipital pole, left, lateral aspect Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.16885 CTCF_epithelial cell of proximal tubule_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null HCC1359 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.62005 DTD2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.61969 GSE153871_1_v_2_cytarabine_human RummaGEO Drug Perturbation Signatures -1.0 null ZNF135 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 54.4283 PMC11063202-41420_2024_1940_MOESM2_ESM.xlsx-THP1-EP300_KOvsNontarget-gene_id_GLI2 Rummagene Transcription Factor Associations 2026 1.0 null HL60 CCLE Cell Line Gene CNV Profiles -1.0 -1.57482 CTCF_MCF-7_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null SHOX JASPAR Predicted Human Transcription Factor Targets 2025 1.0 13.656 NCIH810 CCLE Cell Line Gene CNV Profiles -1.0 -1.92896 496100508_PCx_possible Alzheimer's disease_no TBI_90-94_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 3.55179 CTCF_kidney epithelial cell_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null POU2F2 ENCODE Transcription Factor Targets 1.0 null SW1271 CCLE Cell Line Gene CNV Profiles 1.0 1.53244 GSE172016_2_v_0_paclitaxel_human RummaGEO Drug Perturbation Signatures -1.0 null external granular (germinal) layer of lower rhombic lip Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.896336 GSE116810_5_v_0_selinexor_human RummaGEO Drug Perturbation Signatures -1.0 null VIIIB, left, lateral hemisphere Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.969341 496100294_HIP_possible Alzheimer's disease_TBI_90-94_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.06631 Skin Cutaneous Melanoma_SKCM_TCGA-D3-A1Q6-06A-11R-A18T-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null oculomotor nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 2.07322 organ system cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.500379 Respiratory system disease DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.384 496100476_TCx_no dementia_TBI_88_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.54787 stratum lacunosum-moleculare of caudal CA1 Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.14302 HCFC1_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null OCI-M1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.24243 RDES CCLE Cell Line Gene CNV Profiles -1.0 -3.21049 CTCF_SK-N-SH_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null PBX3 ENCODE Transcription Factor Targets 1.0 null CTCF_astrocyte of the cerebellum_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null Protein phosphatase 4 complex COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 2.06 SUDHL10 CCLE Cell Line Gene CNV Profiles 1.0 2.01675 MDA-MB-453 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.17981 internal segment of globus pallidus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.29906 Immune system cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.341 Hodgkin lymphoma cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.349 SUM 1315M02 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.934376 GSE193157_0_v_1_chloroquine_human RummaGEO Drug Perturbation Signatures -1.0 null EA-18-FP00_10uM NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles 1.0 0.290048 superior frontal gyrus, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.45334 CTCF_endothelial cell of umbilical vein_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null PAX5 ENCODE Transcription Factor Targets 1.0 null Pheochromocytoma and Paraganglioma_PCPG_TCGA-S7-A7X0-01A-12R-A35L-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Nervous system cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.016 CTCF_fibroblast of pedal digit skin_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_GM12873_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null Nematocyst COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.826 SP in midlateral temporal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.80871 Adenofibroma DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.003 GSE169205_0_v_6_sirt5_human RummaGEO Gene Perturbation Signatures 1.0 null NCI-N417 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.32174 CTCF_GM12864_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null Ovary adenocarcinoma cell line TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.226 medial subdivision of central nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.17802 CTCF_GM12871_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Lung squamous cell carcinoma_LUSC_TCGA-22-4599-01A-01R-1443-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null internal male genital organ TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 1.06559 HUH-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.841721 trochlear nucleus, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.61187 CTCF_GM12878_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null oculomotor nuclear complex, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 2.19529 intestinal cell line TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.059241 Male reproductive gland TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 2.123 MYC_K562_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null MAZ ENCODE Transcription Factor Targets 1.0 null skeletal muscle cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.088134 peripheral blood TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.090179 NIHOVCAR3 CCLE Cell Line Gene CNV Profiles 1.0 2.36424 GSE214931_1_v_5_temozolomide_human RummaGEO Drug Perturbation Signatures 1.0 null nonhodgkin GeneRIF Biological Term Annotations 1.0 null EOMES_OE_GDS5077_65_human_RUES2 GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null GSE147366_1_v_2_med13_human RummaGEO Gene Perturbation Signatures -1.0 null PSMG3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.2836 Pheochromocytoma and Paraganglioma_PCPG_TCGA-RT-A6Y9-01A-12R-A35K-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null COLO 741 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.915653 Hodgkin's lymphoma, nodular sclerosis DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.332 cell part COMPARTMENTS Text-mining Protein Localization Evidence Scores 1.0 0.041322 Pheochromocytoma and Paraganglioma_PCPG_TCGA-SR-A6MX-05A-11R-A35L-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null large intestine TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.085623 b-cell lymphoma DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.08068 CTCF_fibroblast of gingiva_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Bone marrow disease DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.335 CTCF_keratinocyte_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null Tumor Cell Invasion DisGeNET Gene-Phenotype Associations 1.0 null GSE171837_0_v_1_bortezomib_human RummaGEO Drug Perturbation Signatures -1.0 null NR1D2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 62.1581 OVCAR-3 cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.064 hsa-miR-665 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.965816 abducens nucleus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.45275 MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE CCLE Cell Line Proteomics 1.0 5.40248 Bladder Urothelial Carcinoma_BLCA_TCGA-G2-A2EJ-01A-11R-A180-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null plumule TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.066717 Thymic medullary epithelium TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.802 ncih1650 TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.866 Ovarian carcinoma DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.218 CTCF_keratinocyte_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null H3K9me3_Neurosphere Cultured Cells Ganglionic Eminence Derived Roadmap Epigenomics Histone Modification Site Profiles 1.0 null thyroid cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.080328 Primary Malignant Neoplasm Of Lung DisGeNET Gene-Disease Associations 1.0 null parolfactory gyri, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.925622 CTCF_fibroblast of upper leg skin_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null mitral valve insufficiency DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.52343 trigger GeneRIF Biological Term Annotations 1.0 null Ovarian disease DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.841 GSE153871_5_v_2_cytarabine_human RummaGEO Drug Perturbation Signatures -1.0 null HSF4 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 16.0344 MZ in posteror frontal cortex (motor cortex) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.06082 ZNF768 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 74.046 skeletal muscle TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.066568 CTCF_CD14-positive monocyte_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE74251_2_v_1_decitabine_human RummaGEO Drug Perturbation Signatures 1.0 null organelle COMPARTMENTS Text-mining Protein Localization Evidence Scores 1.0 0.046274 ELF1_GM12878_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null NCI-H2073 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.11254 RBM28 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.13269 medial habenular nucleus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.27823 trunk TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.214202 MS751 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 2.04808 Bladder Urothelial Carcinoma_BLCA_TCGA-E5-A4TZ-01A-11R-A31N-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null ZNF184 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 22.3121 cell type cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.193285 PMC8567280-EMBR-22-e53014-s008.xlsx-PC3_TIP5_bound_promoter-Unnamed_4_BAZ2A Rummagene Transcription Factor Associations 2026 1.0 null CTCF_GM12878_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null 496100447_HIP_no dementia_TBI_95-99_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.0663 EB2 COSMIC Cell Line Gene Mutation Profiles 1.0 null hsa-miR-3120-3p TargetScan Predicted Nonconserved microRNA Targets 1.0 0.843347 CTCF_osteoblast_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null bronchogenic carcinoma cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.062938 NCIH1944 CCLE Cell Line Gene CNV Profiles -1.0 -1.76093 GSE168797_2_v_5_cannabidiol_human RummaGEO Drug Perturbation Signatures 1.0 null EFM-192B Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.46397 leukocyte TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.245491 Connective tissue cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.216 intracellular part LOCATE Predicted Protein Localization Annotations 1.0 null Oviduct epithelium TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.504 PMC9894241-pnas.2211429119.sd05.xlsx-G8_REST-Dataset_S6_Differentially_expressed_genes_in_G1-G8_REST Rummagene Transcription Factor Associations 2026 1.0 null hodgkin's lymphoma, nodular sclerosis DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.910199 CTCF_GM12892_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Kidney renal papillary cell carcinoma_KIRP_TCGA-P4-A5E8-01A-11R-A28H-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Hepatocellular carcinoma DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.022 t cell receptor complex COMPARTMENTS Text-mining Protein Localization Evidence Scores 1.0 0.392388 GSE220629_0_v_1_foxp3_human RummaGEO Gene Perturbation Signatures -1.0 null PMC11061611-cd-23-0857_table_s4_suppst4.xlsx-Epithelial_B-pEpi13_B_shared_FU1_ASCL1_ASCL1 Rummagene Transcription Factor Associations 2026 1.0 null microcytic anemia DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.235268 lymphocyte TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.314409 ELF1_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF ENCODE Transcription Factor Targets 1.0 null CTCF_H54_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null plant embryo TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.065095 HCFC1 ENCODE Transcription Factor Targets 1.0 null NOS-1 COSMIC Cell Line Gene Mutation Profiles 1.0 null HUPT4 CCLE Cell Line Gene CNV Profiles 1.0 1.61825 GSE193258,GSE193259_5_v_8_osimertinib_human RummaGEO Drug Perturbation Signatures 1.0 null PMC10273062-JCMM-27-1708-s001.xlsx-Sheet_1-BRCA_AND_UCEC_NOT_CESC_NOT_UCS_NR4A2 Rummagene Transcription Factor Associations 2026 1.0 null Brain Lower Grade Glioma_LGG_TCGA-CS-5395-01A-01R-1470-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null squamous cell carcinoma DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.321181 PMC5352183-oncotarget-08-624-s009.xlsx-Table_S20-1_indicates_that_the_gene_is_both_a_TP53-MW_and_a_TP53-MSN_gene_in_the_correponding_cancer_and_0_indicates_not_TP53 Rummagene Transcription Factor Associations 2026 1.0 null Polar nucleus COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.791 GSE133516_5_v_2_kat7_human RummaGEO Gene Perturbation Signatures 1.0 null rectal cancer cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.381003 Leukocyte disease DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.194 vertebrate muscular system TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.060416 Colorectal cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.281 CTCFL ENCODE Transcription Factor Targets 1.0 null Lung squamous cell carcinoma_LUSC_TCGA-21-1077-01A-01R-0692-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null cingulate gyrus, retrosplenial part, right, inferior bank of gyrus Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.39813 immune system disease DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.051465 Liver hepatocellular carcinoma_LIHC_TCGA-RC-A6M6-01A-11R-A32O-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null MYC_MCF-7_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null BHLHE40 ENCODE Transcription Factor Targets 1.0 null RORC JASPAR Predicted Human Transcription Factor Targets 2025 1.0 17.8055 frontal pole, right, medial aspect Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -2.12142 central nucleus of inferior colliculus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 3.34509 connective tissue cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.043556 colonic cancer cell line TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.062019 KLE Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.946146 PAX5_GM12878_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null ZNF143 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 37.0516 CTCF_GM12870_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_BJ_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null RAD21_H1-hESC_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null Kidney renal clear cell carcinoma_KIRC_TCGA-CZ-4860-01A-01R-1305-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null ELF3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 37.5249 Disease of anatomical entity DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.731 Spermatocytoma DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.829 IRF4_GM12878_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_GM12870_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null respiratory system TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.054111 non-hodgkin lymphoma DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.067303 colonic cell line TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.060932 GSE171837_0_v_3_bortezomib_human RummaGEO Drug Perturbation Signatures -1.0 null GSE193258,GSE193259_9_v_8_osimertinib_human RummaGEO Drug Perturbation Signatures 1.0 null L-428 cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.099 head TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.050758 Allantoic fluid TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.727 Gonad TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 2.3 HUT78 CCLE Cell Line Gene CNV Profiles -1.0 -1.80972 SNU475 CCLE Cell Line Gene CNV Profiles 1.0 1.45614 PMC10550934-41467_2023_41927_MOESM4_ESM.xlsx-degenes_beatAML_CEBPA-WT-gene_symbol_CEBPA Rummagene Transcription Factor Associations 2026 1.0 null reproductive system TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.719113 Lung disease DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.431 GSE172146_2_v_0_mettl1_human RummaGEO Gene Perturbation Signatures 1.0 null CTCF_GM12865_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null Uterine Carcinosarcoma_UCS_TCGA-N9-A4PZ-01A-22R-A28V-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null SG in rostral entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.55957 CTCF_LNCaP clone FGC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_brain microvascular endothelial cell_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Skin Cutaneous Melanoma_SKCM_TCGA-GF-A3OT-06A-23R-A239-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null INTS6/SAGE1/DDX26B/CT45, C-terminal InterPro Predicted Protein Domain Annotations 1.0 null GSE235701,GSE261434_2_v_3_enasidenib_human RummaGEO Drug Perturbation Signatures -1.0 null Large B-cell lymphoma DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.038 breast cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.204593 GSE169205_0_v_1_sirt5_human RummaGEO Gene Perturbation Signatures 1.0 null nervous system TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.051034 Endocrine system disease DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.757 Lung adenocarcinoma_LUAD_TCGA-44-5643-01A-01R-1628-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null hypersensitivity reaction type ii disease DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.082602 CTCF_HCT116_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_HepG2_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null HEPG2_LIVER CCLE Cell Line Proteomics 1.0 2.85783 heart valve disease DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.165217 CTCF_GM13977_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null GATA6 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 30.1954 Leukemia DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.132 hsa-miR-4668-5p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.99187 disease of cellular proliferation DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.590948 OVCAR433 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.63466 CTCF_foreskin fibroblast_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Pancreatic adenocarcinoma_PAAD_TCGA-3E-AAAY-01A-11R-A38C-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null GSE153871_0_v_2_cytarabine_human RummaGEO Drug Perturbation Signatures -1.0 null Ovarian surface epithelial cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.032 Z chromosome COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.736 ventricular (matrix) zone of pons Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.16745 colorectal adenocarcinoma cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.390421 KMM-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.13583 Kidney renal papillary cell carcinoma_KIRP_TCGA-A4-7915-01A-11R-2204-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Endodermal sinus tumor DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.158 SG in medial temporal-occipital cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.27642 carcinoma cell line TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.052829 YD-49-HM53_10uM NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles 1.0 0.209639 MHC class I protein complex COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.991 GSE148262,GSE150691_3_v_2_hdlbp_human RummaGEO Gene Perturbation Signatures 1.0 null IZ in midlateral temporal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.826925 ZNF143 ENCODE Transcription Factor Targets 1.0 null H2AFZ ENCODE Transcription Factor Targets 1.0 null epithelioma cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.058525 CAL120 CCLE Cell Line Gene CNV Profiles -1.0 -1.37052 disease of metabolism DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.04126 Primary endosperm nucleus COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 1.442 GSE193258,GSE193259_9_v_1_osimertinib_human RummaGEO Drug Perturbation Signatures 1.0 null hodgkin GeneRIF Biological Term Annotations 1.0 null egg TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.099608 hematologic cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.493503 hsa-miR-4455 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.843347 Male reproductive organ cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.254 TBX19 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 26.1151 germ cell and embryonal cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.062075 BHLHE40_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_GM13976_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null seen GeneRIF Biological Term Annotations 1.0 null EHF JASPAR Predicted Human Transcription Factor Targets 2025 1.0 37.256 JJN-3 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.842467 Ovarian clear cell adenocarcinoma DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.044 CTCF_MCF-7_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null LCLC-97TM1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.866548 colorectum TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.086825 Intine COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.781 Lung squamous cell carcinoma_LUSC_TCGA-NC-A5HK-01A-11R-A26W-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null HCC1599 CCLE Cell Line Gene CNV Profiles 1.0 1.93509 Neoplasm Metastasis DisGeNET Gene-Phenotype Associations 1.0 null CTCF_K562_hg19_6 ENCODE Transcription Factor Binding Site Profiles 1.0 null adult TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.298883 locus ceruleus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.999266 lateral intermediate part of entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.13875 endocrine gland cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.04757 VIIIB, right, paravermis Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.26489 CTCF_HEK293_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null cellular_component LOCATE Predicted Protein Localization Annotations 1.0 null Golgi cis cisterna COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.802 seminoma DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.721673 GSE116492,GSE116495_3_v_2_stag2_human RummaGEO Gene Perturbation Signatures 1.0 null Testicular disease DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.443 central portion of GPi Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.1072 E2F3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 34.3447 GSE142210_4_v_7_panobinostat_human RummaGEO Drug Perturbation Signatures 1.0 null CBX3_K562_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null Lung squamous cell carcinoma_LUSC_TCGA-52-7811-01A-11R-2125-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null dorsomedial hypothalamic nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.03086 Lung adenocarcinoma_LUAD_TCGA-67-3771-01A-01R-0946-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null CTCF_GM12878_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null HCC89 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.12325 H2AFZ_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null USF1_SK-N-SH_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE206516,GSE206518_1_v_4_ptdss2_human RummaGEO Gene Perturbation Signatures -1.0 null superior occipital gyrus, right, inferior bank of gyrus Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.80707 Acute Myeloid Leukemia_LAML_TCGA-AB-2811-03B-01T-0760-13 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null RCM-1 COSMIC Cell Line Gene Mutation Profiles 1.0 null CTCF_GM12867_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE168797_1_v_0_cannabidiol_human RummaGEO Drug Perturbation Signatures 1.0 null membrane-bounded organelle LOCATE Predicted Protein Localization Annotations 1.0 null Uterine Carcinosarcoma_UCS_TCGA-N5-A4RA-01A-11R-A28V-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null COLO 201 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.01426 MX-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.02189 SP1_GM12878_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null HPAC Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.842467 CTCF_fibroblast of dermis_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null organism form TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.051043 GSE201309_5_v_3_matrine_human RummaGEO Drug Perturbation Signatures 1.0 null B-cell lymphoma DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.1 Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-G8-6909-01A-11R-2213-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null E2F6_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null Hepatobiliary disease DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.0 NR1D1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 25.9961 Brain Lower Grade Glioma_LGG_TCGA-HT-A74J-01A-12R-A32Q-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null CTCF_A549_hg19_8 ENCODE Transcription Factor Binding Site Profiles 1.0 null epithelial cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.058286 IZ in lateral temporal-occipital cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.66509 RXRA_HepG2_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null primary thrombocytopenia DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.420266 CTCF_fibroblast of villous mesenchyme_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null Endocrine gland cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.241 CTCF_GM12874_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null epithelial GeneRIF Biological Term Annotations 1.0 null 496100546_TCx_no dementia_no TBI_78_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.06944 EB1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.9851 hypersensitivity reaction disease DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.068015 Epithelial ovarian cancer cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.363 HCC2279 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.26533 CTCF_K562_hg19_7 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE214931_3_v_0_temozolomide_human RummaGEO Drug Perturbation Signatures -1.0 null GSE223893_1_v_10_setd2_human RummaGEO Gene Perturbation Signatures -1.0 null Thoracic disease DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.602 F36P CCLE Cell Line Gene CNV Profiles -1.0 -1.49354 U937 CCLE Cell Line Gene CNV Profiles 1.0 3.2803 MAZ_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null 496100450_HIP_no dementia_no TBI_95-99_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 5.43744 ESS-1 COSMIC Cell Line Gene Mutation Profiles 1.0 null GABPA JASPAR Predicted Human Transcription Factor Targets 2025 1.0 26.3366 Acute Myeloid Leukemia_LAML_TCGA-AB-2842-03A-01T-0734-13 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null ht-1080 cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.320227 GSE169205_3_v_6_sirt5_human RummaGEO Gene Perturbation Signatures 1.0 null Prostate disease DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.076 A172 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.57506 colonic cancer cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.094575 u266b1 TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.571 IZ in dorsomedial frontal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.48499 Skin Cutaneous Melanoma_SKCM_TCGA-EE-A20H-06A-11R-A18S-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null LMSU_STOMACH CCLE Cell Line Proteomics 1.0 3.12041 Brain Lower Grade Glioma_LGG_TCGA-CS-5394-01A-01R-1470-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null CTCF_WERI-Rb-1_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null integument TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.053225 E2F2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 22.057 Brain Lower Grade Glioma_LGG_TCGA-HT-7476-01A-11R-2027-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null SNAI3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 38.6881 outer CP in dorsomedial frontal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -2.59633 CTCF_GM12864_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null TP63 JASPAR Predicted Transcription Factor Targets 1.0 null COPS4 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.15546 layer IIIa of caudal entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.53545 COLO783 CCLE Cell Line Gene CNV Profiles -1.0 -1.33399 shoot TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.060504 gastrointestinal cancer cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.087164 whole plant TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.053948 hematopoietic cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.310421 Pheochromocytoma and Paraganglioma_PCPG_TCGA-QR-A70M-01A-11R-A35K-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null cochlear nuclei Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.18237 496100523_HIP_possible Alzheimer's disease_no TBI_90-94_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 4.52326 gonad TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 1.26352 Hodgkin lymphoma cell line TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.794 ELF1_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null cancers GeneRIF Biological Term Annotations 1.0 null plant form TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.061168 8505C_THYROID CCLE Cell Line Proteomics 1.0 6.37432 GATA4 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 28.4373