association	dataset	threshold value	standardized value
disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.455224
Lung squamous cell carcinoma_LUSC_TCGA-43-8118-01A-11R-2403-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Viral infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.299
Lung adenocarcinoma_LUAD_TCGA-49-6742-01A-11R-1858-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CP in caudal hippocampus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.49143
OCUM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.20808
Esophageal cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.912
Lung cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.768
medioventral part of putamen	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.12047
Extramedullary plasmacytoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.084
PMC12619835-41467_2025_66007_MOESM13_ESM.xlsx-Sheet1-Classical_KLF5_peaks_KLF5	Rummagene Transcription Factor Associations 2026	1.0	null
Ovary cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.738
p92	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.789
Cellular myxoid liposarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.442
ZNF682	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	56.3677
RPS20	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.51368
Kidney renal clear cell carcinoma_KIRC_TCGA-CJ-5681-01A-11R-1541-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Nkx2-1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	39.3969
X-linked monogenic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.06
496100387_TCx_no dementia_no TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.22458
outcome	GeneRIF Biological Term Annotations	1.0	null
medial habenular nucleus, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-2.02123
SK-MEL-28 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.011
Helper T-lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.134
Adult T-cell leukemia/lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.4
tumors	GeneRIF Biological Term Annotations	1.0	null
Chronic myeloid leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.624
Stomach carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.452
ME-180	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.925968
Leukocyte disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.583
LAN-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.546
outer SZ in midlateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-3.413
demonstrate	GeneRIF Biological Term Annotations	1.0	null
IgA immunoglobulin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.714
Lung squamous cell carcinoma_LUSC_TCGA-NC-A5HK-01A-11R-A26W-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Meningioma	DisGeNET Gene-Disease Associations	1.0	null
JEKO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00724
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.62387
MIF_DEPLETION_GDS3626_95_human_HEK293 kidney cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
ELK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.1828
Myeloma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.721
Acute lymphoblastic leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.169
CTCF_A549_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
thus	GeneRIF Biological Term Annotations	1.0	null
Ptf1a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	165.204
Sensory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.671
Esophageal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.258
Foxj2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	40.9646
Skin Cutaneous Melanoma_SKCM_TCGA-D3-A2JO-06A-11R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Ovarian surface epithelial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.697
th2	GeneRIF Biological Term Annotations	1.0	null
Esophageal Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
Cell type benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.531
Esophageal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.306
Lung squamous cell carcinoma_LUSC_TCGA-94-8490-01A-11R-2326-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Epithelial ovarian cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.494
Bone cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.617
AP-type membrane coat adaptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.521
Natural killer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.444
members	GeneRIF Biological Term Annotations	1.0	null
immunodominant	GeneRIF Biological Term Annotations	1.0	null
PMC12619835-41467_2025_66007_MOESM8_ESM.xlsx-Classical_KLF5_peaks-Nearest_Ensembl_KLF5	Rummagene Transcription Factor Associations 2026	1.0	null
parolfactory gyri, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.887632
Kidney renal papillary cell carcinoma_KIRP_TCGA-A4-A57E-01A-11R-A26U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
JURKAT cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.598
organelle	LOCATE Curated Protein Localization Annotations	1.0	null
Liver cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.253
PLAGL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	107.47
follow	GeneRIF Biological Term Annotations	1.0	null
Lung adenocarcinoma_LUAD_TCGA-55-1592-01A-01R-0946-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Ar	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	69.4718
CTCF_K562_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
496100601_TCx_possible Alzheimer's disease_no TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.25806
Squamous Cell Carcinoma Of Esophagus	DisGeNET Gene-Disease Associations	1.0	null
Ovary adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.57
strong	GeneRIF Biological Term Annotations	1.0	null
caudal prosubiculum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.887536
Vdr	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	15.897
Dermatofibrosarcoma protuberans	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.063
496100378_TCx_probable Alzheimer's disease_TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.69139
Bladder Urothelial Carcinoma_BLCA_TCGA-2F-A9KP-01A-11R-A38B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Pancreas disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.167
Gamma delta T-lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.817
Lung squamous cell carcinoma_LUSC_TCGA-77-8148-01A-11R-2247-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
VIIB, right, paravermis	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.11678
DMS 273	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.03018
Adenoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.183
Zic2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	57.4006
Salivary gland disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.011
PAX5_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.874
epitopes	GeneRIF Biological Term Annotations	1.0	null
Skin melanoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.033
Breast carcinoma in situ	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.493
responses	GeneRIF Biological Term Annotations	1.0	null
thicker	GeneRIF Biological Term Annotations	1.0	null
Pancreatic carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.798
Ewing sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.756
Lung squamous cell carcinoma_LUSC_TCGA-85-A4JC-01A-11R-A24Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
immunization	GeneRIF Biological Term Annotations	1.0	null
adult stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.321685
ZNF524	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.0511
Urinary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.403
inducing	GeneRIF Biological Term Annotations	1.0	null
hsa-miR-495	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
GBAF complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.548
Ebf4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	28.2855
Spermatogonium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.708
ZKSCAN3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.2524
epithelial	GeneRIF Biological Term Annotations	1.0	null
aberrant	GeneRIF Biological Term Annotations	1.0	null
Hematopoietic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	3.004
posterior hypothalamic area, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.01079
Sox7	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	34.6606
Pheochromocytoma and Paraganglioma_PCPG_TCGA-QR-A700-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Primary cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.818
Lung adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.82
Bach1::Mafk	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	39.7368
molecular	GeneRIF Biological Term Annotations	1.0	null
Peritoneum cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.2
Gonocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.098
Photoreceptor proximal connecting cilium	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.327
Human immunodeficiency virus infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.436
occurring	GeneRIF Biological Term Annotations	1.0	null
Multiple Myeloma	DisGeNET Gene-Disease Associations	1.0	null
laterodorsal subdivision of area 8	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.60203
Childhood Liposarcoma	DisGeNET Gene-Disease Associations	1.0	null
tcell	GeneRIF Biological Term Annotations	1.0	null
ZBTB7B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.7034
monocytederived	GeneRIF Biological Term Annotations	1.0	null
Bone sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.828
ZNF610	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	82.6697
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A2GI-06A-11R-A18T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
496100436_FWM_no dementia_no TBI_95-99_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.47246
Nasopharynx carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.533
Tarsal-Carpal Coalition Syndrome	DisGeNET Gene-Disease Associations	1.0	null
Type V protein secretion system complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.578
Multiple sclerosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.167
17254359-Table1	GeneSigDB Published Gene Signatures	1.0	null
tumorspecific	GeneRIF Biological Term Annotations	1.0	null
Primary immunodeficiency disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.006
KLF11	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	170.239
Melanoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.484
Nde	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.525
SKOV-3 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.387
T-lymphocyte cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.006
strategy	GeneRIF Biological Term Annotations	1.0	null
K-562 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.714
malignant mesothelioma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.482464
Peripheral nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.119
Oropharynx cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.213
Survivin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.83
liposarcoma	GeneRIF Biological Term Annotations	1.0	null
Golgi-associated vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.332
Melanoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.397
Lung adenocarcinoma_LUAD_TCGA-NJ-A55R-01A-11R-A262-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Anogenital venereal wart	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.364
Ocular melanoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.342
COLO 741	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.888571
most	GeneRIF Biological Term Annotations	1.0	null
Acquired immunodeficiency syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.171
Severe combined immunodeficiency	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.305
Chondrosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.729
family	GeneRIF Biological Term Annotations	1.0	null
leads	GeneRIF Biological Term Annotations	1.0	null
CSF1-CSF1R complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.526
support	GeneRIF Biological Term Annotations	1.0	null
MAPK1_knockdown_112_GSE27869	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	-1.0	-1.74237
496100405_TCx_probable Alzheimer's disease_no TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.84149
G44	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00497
Lung adenocarcinoma_LUAD_TCGA-55-A4DF-01A-11R-A24H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Triple-Negative Breast Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
Thymic stromal cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.3
Epithelioid sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.468
boris	GeneRIF Biological Term Annotations	1.0	null
adult	GeneRIF Biological Term Annotations	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-43-7657-01A-31R-2125-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Pleural mesothelioma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.763
Acute lymphoblastic leukemia cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.684
male reproductive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.912653
intracellular organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
thelper	GeneRIF Biological Term Annotations	1.0	null
Thap11	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	41.8349
nucleus	LOCATE Predicted Protein Localization Annotations	1.0	null
seminoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.568775
Gastrointestinal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.565
Immune system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.498
differential	GeneRIF Biological Term Annotations	1.0	null
PMC5352183-oncotarget-08-624-s009.xlsx-Table_S20-1_indicates_that_the_gene_is_both_a_TP53-MW_and_a_TP53-MSN_gene_in_the_correponding_cancer_and_0_indicates_not_TP53	Rummagene Transcription Factor Associations 2026	1.0	null
early	GeneRIF Biological Term Annotations	1.0	null
EFM-192B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.12542
LOU-NH91	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01466
POLR2AphosphoS5_Panc1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Oc cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.131
Fowlpox	DisGeNET Gene-Disease Associations	1.0	null
Mesothelioma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.925
Rectal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.108
TFAP2C	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	196.332
Capillary leak syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.491
Retinal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.13
Peripheral blood stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.383
X, left, paravermis	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	2.51473
CTDK-1 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.632
496100515_HIP_dementia_TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.64115
outer SZ in primary visual cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.868006
Ductal carcinoma in situ	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.483
abnormality	GeneRIF Biological Term Annotations	1.0	null
Childhood Osteosarcoma	DisGeNET Gene-Disease Associations	1.0	null
Non-Small Cell Lung Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
Metastatic Non-Small Cell Lung Cancer	DisGeNET Gene-Disease Associations	1.0	null
Hematopoietic system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.639
Upper respiratory tract disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.466
Beta thalassemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.191
systems	GeneRIF Biological Term Annotations	1.0	null
sarcomas	GeneRIF Biological Term Annotations	1.0	null
Mesenchymal Cell Neoplasm	DisGeNET Gene-Disease Associations	1.0	null
a95	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.296
Cervix disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.043
IV, right, paravermis	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.19723
Follicular lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.024
Trophoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.732
inferior colliculus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-2.015
EGR1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	109.916
Conventional (Clear Cell) Renal Cell Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
whole body	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Testicular cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.825
MAZ	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	289.221
Ppara	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	32.608
oaw28	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.806
Nr1h3::Rxra	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	31.8006
melana	GeneRIF Biological Term Annotations	1.0	null
antigens	GeneRIF Biological Term Annotations	1.0	null
interleukin-7 receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.753
caudal division of IPC (area 39)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-2.15018
ZNF341	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.8284
SUP-T1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.257
outer SZ in ventromedial extrastriate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.23411
than	GeneRIF Biological Term Annotations	1.0	null
E2F6	JASPAR Predicted Transcription Factor Targets	1.0	null
hemangiopericytoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.828229
MSL complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.588
Rhabdomyosarcoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.773
Hoxa11	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	17.9922
ssx2	GeneRIF Biological Term Annotations	1.0	null
Carbohydrate metabolic disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.28
Dermatitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.416
Hepatobiliary system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.305
GSE74251_2_v_1_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
SNU-182	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28675
Malignant fibrous histiocytoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.286
Autosomal dominant disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.209
Leiomyosarcoma Of Uterus	DisGeNET Gene-Disease Associations	1.0	null
Lipoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.073
Lung adenocarcinoma_LUAD_TCGA-44-6778-01A-11R-1858-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Graft-Vs-Host Disease	DisGeNET Gene-Disease Associations	1.0	null
generation	GeneRIF Biological Term Annotations	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-HD-A634-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Burkitt lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.168
showed	GeneRIF Biological Term Annotations	1.0	null
cd4	GeneRIF Biological Term Annotations	1.0	null
Mineral metabolism disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.038
Pancreatic adenocarcinoma_PAAD_TCGA-LB-A7SX-01A-11R-A33R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
syndecan-syntenin-ALIX complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.553
Nrf1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	53.9953
Twist2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	47.7052
first	GeneRIF Biological Term Annotations	1.0	null
melanoma	GeneRIF Biological Term Annotations	1.0	null
CTCF_HGPS cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Colo-205 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.649
ts/a	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.589
Prostate cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.408
DNA repair complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.607
OVCA 420	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.839888
highavidity	GeneRIF Biological Term Annotations	1.0	null
VI, right, paravermis	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.939772
Testicular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.782
okt3 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.14
Fibrosarcoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.075
targeted	GeneRIF Biological Term Annotations	1.0	null
RREB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	821.091
Plant collar	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.983
muscle cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.26514
SUM 1315M02	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.914641
Epidermal cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.932
Ewing's sarcoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.623
ZNF76	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.0487
Squamous cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.779
ZBED4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	170.242
Combined immunodeficiency	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.306
Bacterial infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.816
COVID-19	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.284
ER membrane insertion complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.095
Plasma membrane protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.338
eliciting	GeneRIF Biological Term Annotations	1.0	null
Ovarian carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.03
Plasmacytoid dendritic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.494
Lymphoid tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	3.063
Kidney cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.494
fastigial nucleus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.21556
Crus II, left, paravermis	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.59942
amygdalohippocampal transition zone, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.976477
Crus I, right, lateral hemisphere	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.913258
Myxofibrosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.845
humans	GeneRIF Biological Term Annotations	1.0	null
HCC1187	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.45517
selfantigens	GeneRIF Biological Term Annotations	1.0	null
Thymic epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.201
Uterine Carcinosarcoma_UCS_TCGA-NA-A4QW-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Mismatch repair cancer syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.031
Pneumonia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.02
ZNF454	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	157.989
helper	GeneRIF Biological Term Annotations	1.0	null
Thymic medullary epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.337
stage	GeneRIF Biological Term Annotations	1.0	null
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
mhc	GeneRIF Biological Term Annotations	1.0	null
distinct	GeneRIF Biological Term Annotations	1.0	null
Melanosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.225
Dendritic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.678
Stat4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	71.4615
recognized	GeneRIF Biological Term Annotations	1.0	null
V, left, paravermis	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.888576
cellular_component	LOCATE Curated Protein Localization Annotations	1.0	null
hsa-miR-4476	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.13535
MYC	ENCODE Transcription Factor Targets	1.0	null
CTCF_GM19239_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-Q1-A73P-01A-11R-A32P-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Breast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.207
ae3	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.907
trochlear nucleus, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.14215
GSE212330_1_v_3_azacitidine_human	RummaGEO Drug Perturbation Signatures	1.0	null
KG-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.732
KLF17	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	235.916
ZFP57	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.6311
Neuroblastoma	DisGeNET Gene-Disease Associations	1.0	null
Blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.963
Synovial sarcoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.573
mouth	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054903
Childhood Glioblastoma	DisGeNET Gene-Disease Associations	1.0	null
SUMO activating enzyme complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.321
Tcf21	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	82.8033
Plasma membrane signaling receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.367
CTCF_endothelial cell of umbilical vein_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Thyroid Carcinoma, Sporadic Medullary	DisGeNET Gene-Disease Associations	1.0	null
CTCF_medulloblastoma_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
central gray of the pons, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-2.21395
Organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	3.026
Hmga1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	48.5566
mp9	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.74
feasible	GeneRIF Biological Term Annotations	1.0	null
Clear cell renal cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.139
Bone inflammation disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.219
Monophasic synovial sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.259
Bone marrow cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.913
Chronic lymphocytic leukemia cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.923
Thymic cortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.318
Integrin alphav-beta6 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.878
Plagl1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	25.2233
Uveitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.517
tumorinfiltrating	GeneRIF Biological Term Annotations	1.0	null
B16-F1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.813
Arid5a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	34.4979
Giant Cell Fibroblastoma	DisGeNET Gene-Disease Associations	1.0	null
Splenocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.783
PMC5932236__F4	PFOCR Pathway Figure Associations 2024	1.0	null
MGH-U4 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.938
Lung squamous cell carcinoma_LUSC_TCGA-77-7463-01A-11R-2045-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ROMIDEPSIN	DGIdb Drug Targets 2026	1.0	0.8822
Head and Neck squamous cell carcinoma_HNSC_TCGA-RS-A6TO-01A-32R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
induces	GeneRIF Biological Term Annotations	1.0	null
Mucositis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.03
Osteosarcoma	DisGeNET Gene-Disease Associations	1.0	null
Stomach cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.032
Thymus gland disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.098
Jun	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	46.1113
SNU-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.928318
rostral division of OFCi (area 11)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.26002
PMC7300082-41598_2020_66556_MOESM11_ESM.xlsx-Supplementary_Table_10-ETS2_ETS2	Rummagene Transcription Factor Associations 2026	1.0	null
Autoimmune disease of the nervous system	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.231
cochlear nuclei	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.06091
Thymoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.93
Hi-5 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.503
Contractile vacuole complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.673
Kidney renal papillary cell carcinoma_KIRP_TCGA-B3-4104-01A-02R-1351-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
membrane-bounded organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
Spindle cell sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.227
CTCF_MCF-7_hg19_6	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Serous cystadenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.318
Respiratory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.688
immunologic	GeneRIF Biological Term Annotations	1.0	null
Apoptotic body	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.383
B-lymphoblastoid cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.498
B-16 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.935
downregulation	GeneRIF Biological Term Annotations	1.0	null
THRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	86.5
decitabine	CTD Gene-Chemical Interactions	1.0	null
usefulness	GeneRIF Biological Term Annotations	1.0	null
Hepatitis B	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.704
ldr8	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.872
crosspresentation	GeneRIF Biological Term Annotations	1.0	null
Foxj3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	43.1379
Urinary bladder cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.242
potent	GeneRIF Biological Term Annotations	1.0	null
tetramer	GeneRIF Biological Term Annotations	1.0	null
Germinal center	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.324
Autoimmune disease of endocrine system	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.11
malignancy	GeneRIF Biological Term Annotations	1.0	null
cellular_component	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
GSE212330_1_v_0_azacitidine_human	RummaGEO Drug Perturbation Signatures	1.0	null
histotype	GeneRIF Biological Term Annotations	1.0	null
metastatic	GeneRIF Biological Term Annotations	1.0	null
diffusely	GeneRIF Biological Term Annotations	1.0	null
Thyroid cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.336
HCC1428	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.873512
spermatogonium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.779401
paraventricular nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.21915
Extracellular membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.096
Retrotransposon nucleocapsid	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.947
496100479_FWM_no dementia_TBI_89_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.87835
Adenoid Cystic Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
VZ in midlateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.971838
leiomyosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.48893
KG-1A cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.707
CTCF_GM10266_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Lung adenocarcinoma_LUAD_TCGA-62-8399-01A-21R-2326-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SCHNEIDER-2 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.512
carcinomas	GeneRIF Biological Term Annotations	1.0	null
Acute myeloid leukemia cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.533
MPT synthase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.568
colo857	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.521
Lung adenocarcinoma_LUAD_TCGA-75-5147-01A-01R-1628-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ZNF460	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	215.3
MAFA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.9178
Medulary Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
B-cell lymphoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.8
Prostate adenocarcinoma_PRAD_TCGA-HC-7738-01A-11R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Nr5a1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	28.9566
Childhood Myelodysplastic Syndrome	DisGeNET Gene-Disease Associations	1.0	null
JURKAT E-6.1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.049
Ewings Sarcoma	DisGeNET Gene-Disease Associations	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-E1-A7YY-01A-11R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Bone marrow-derived dendritic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.279
Transport vesicle membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.529
Stage Iii Cutaneous Melanoma Ajcc V6	DisGeNET Gene-Disease Associations	1.0	null
subgranular zone of rostral dentate gyrus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.74949
Replisome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.456
VEZF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	138.526
IRF4_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SREBF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	78.7877
synergy	GeneRIF Biological Term Annotations	1.0	null
Phosphatidylinositol phosphate phosphatase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.985
a2	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.6
BV173 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.792
subset	GeneRIF Biological Term Annotations	1.0	null
lateral habenular nucleus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.26603
outer CP in medial temporal-occipital cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.0091
magea1	GeneRIF Biological Term Annotations	1.0	null
value	GeneRIF Biological Term Annotations	1.0	null
Uterine Carcinosarcoma_UCS_TCGA-N6-A4VD-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
meningioma	GeneRIF Biological Term Annotations	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-FD-A3B6-01A-21R-A20F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Malignant ovarian surface epithelial-stromal neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.037
Male reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.454
other	GeneRIF Biological Term Annotations	1.0	null
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1653
neck	GeneRIF Biological Term Annotations	1.0	null
EKC/KEOPS complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.385
Bone cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.813
Pancreatic ductal adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.473
respectively	GeneRIF Biological Term Annotations	1.0	null
Adult Synovial Sarcoma	DisGeNET Gene-Disease Associations	1.0	null
Autoimmune disease of musculoskeletal system	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.585
PMC11769652-EHF2-12-250-s001.xlsx-Sheet1-ZEB1_ZEB1	Rummagene Transcription Factor Associations 2026	1.0	null
factors	GeneRIF Biological Term Annotations	1.0	null
Cystadenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.299
Sarcoma_SARC_TCGA-DX-A8BK-01A-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.491
Skin cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.48
spontaneous	GeneRIF Biological Term Annotations	1.0	null
M/G1 phase-specific MADS box-forkhead transcription factor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.819
MDA-MB-453	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.96024
Ovary epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.185
induction	GeneRIF Biological Term Annotations	1.0	null
59m	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.806
epithelioid	GeneRIF Biological Term Annotations	1.0	null
IX, left, paravermis	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.11009
proportion	GeneRIF Biological Term Annotations	1.0	null
CTCF	ENCODE Transcription Factor Targets	1.0	null
Mesenchymal cell neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.374
immunohistostaining	GeneRIF Biological Term Annotations	1.0	null
exhibit	GeneRIF Biological Term Annotations	1.0	null
lateral nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.940827
HES7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.0546
used	GeneRIF Biological Term Annotations	1.0	null
MYCN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.1019
SP in orbital frontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.28367
immunocytochemistry	GeneRIF Biological Term Annotations	1.0	null
Organ system benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.493
interleukin-27 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.218
Heart disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.097
SW837	COSMIC Cell Line Gene CNV Profiles	1.0	3.12177
NALM-6 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.384
testicular	GeneRIF Biological Term Annotations	1.0	null
Gastroesophageal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.449
AU565	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.09495
Gli1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	32.5863
contrast	GeneRIF Biological Term Annotations	1.0	null
Autoimmune disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.932
effectors	GeneRIF Biological Term Annotations	1.0	null
Uveal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.782
Pancreatic adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.702
endocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.393442
Tendon	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.044
CTCF_GM20000_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Histone mutated tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.096
Thyroid gland disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.541
Nervous system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.414
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-FF-8043-01A-11R-2213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
derived	GeneRIF Biological Term Annotations	1.0	null
system	GeneRIF Biological Term Annotations	1.0	null
NCI-H1435	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00724
Malignant Tumor Of Cervix	DisGeNET Gene-Disease Associations	1.0	null
Synovial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.483
Somatotrophinoma, Familial	DisGeNET Gene-Disease Associations	1.0	null
Foxo1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	16.3061
SP in entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.918986
Myeloid leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.133
Skin Cutaneous Melanoma_SKCM_TCGA-ER-A19G-06A-11R-A18U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
powerful	GeneRIF Biological Term Annotations	1.0	null
VIIIA, right, lateral hemisphere	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	2.13645
connective tissue cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.615529
Leukocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	3.025
Leukemic stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.884
class	GeneRIF Biological Term Annotations	1.0	null
Atoh1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	56.559
Olig2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	52.5476
Capillary disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.454
Integral component of endoplasmic reticulum membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.918
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055409
Lymphopenia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.556
Lung non-squamous non-small cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.449
TFAP2A	JASPAR Predicted Transcription Factor Targets	1.0	null
Thyroid Neoplasm	DisGeNET Gene-Disease Associations	1.0	null
Thymus cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.101
Skin carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.814
Rfx6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	32.4621
Glioblastoma	DisGeNET Gene-Disease Associations	1.0	null
cellular	GeneRIF Biological Term Annotations	1.0	null
VZ in ventromedial extrastriate cortex (VP)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.72714
Golgi-associated vesicle membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.477
Myelodysplastic syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.929
external granular (germinal) layer of upper rhombic lip	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.928283
Myxoid liposarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.64
Malignant astrocytoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.175
Breast carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.871
Small cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.181
Advanced Sarcoma	DisGeNET Gene-Disease Associations	1.0	null
Nr5a2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	37.9096
classi	GeneRIF Biological Term Annotations	1.0	null
highlevel	GeneRIF Biological Term Annotations	1.0	null
presence	GeneRIF Biological Term Annotations	1.0	null
ZNF707	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	128.983
496100484_FWM_no dementia_no TBI_86_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.97076
Sox1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	36.1024
induce	GeneRIF Biological Term Annotations	1.0	null
blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.0511
Stat5a::Stat5b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	44.1087
Systemic lupus erythematosus	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.007
Edinger-Westphal nucleus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.64521
Hnf1a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	39.0424
NS-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.71
Synovium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.152
prostatic	GeneRIF Biological Term Annotations	1.0	null
germ	GeneRIF Biological Term Annotations	1.0	null
CD40 receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.791
indusium griseum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.6208
Cervical cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.045
gamma-delta T cell receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.646
inner SZ in posterior parahippocampal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.905026
olfactory tubercle	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.83093
integument	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
CTCF_MCF-7_hg19_7	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Lymphoid leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.283
detectable	GeneRIF Biological Term Annotations	1.0	null
Coated vesicle membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.49
Plant cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.125
KLF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	255.968
Atf3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	22.3019
Bladder disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.227
Extracellular exosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.995
without	GeneRIF Biological Term Annotations	1.0	null
Cholangiocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.703
ETS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.2014
Pleural disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.45
Urothelial Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
nyeso1specific	GeneRIF Biological Term Annotations	1.0	null
Primary Cholangiocarcinoma Of Intrahepatic Biliary Tract	DisGeNET Gene-Disease Associations	1.0	null
cingulate gyrus, retrosplenial part, right, inferior bank of gyrus	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.968893
tlr4	GeneRIF Biological Term Annotations	1.0	null
trans-Golgi network transport vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.626
Stomach disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.024
Synovial sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	3.169
T2 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.021
KLF5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	390.449
Nkx3-2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	33.1684
Small Cell Carcinoma Of Lung	DisGeNET Gene-Disease Associations	1.0	null
against	GeneRIF Biological Term Annotations	1.0	null
responded	GeneRIF Biological Term Annotations	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-43-3394-01A-01R-0980-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
antinyeso1	GeneRIF Biological Term Annotations	1.0	null
Vitiligo	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.824
Stat6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	26.0945
Syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.503
round	GeneRIF Biological Term Annotations	1.0	null
coordinated	GeneRIF Biological Term Annotations	1.0	null
MDAMB157	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	2.40326
organelle part	LOCATE Curated Protein Localization Annotations	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-DD-A1EL-01A-11R-A155-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Hepatocellular carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.205
Anaplastic large cell lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.079
naturally	GeneRIF Biological Term Annotations	1.0	null
parasolitary nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.27788
HCC1359	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49614
Lymphoid cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	3.082
Mantle cell lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.475
NCI-H740 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.042
central gray of the pons, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.00738
detected	GeneRIF Biological Term Annotations	1.0	null
reciprocal	GeneRIF Biological Term Annotations	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-G9-6363-01A-21R-1789-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
DECITABINE	DGIdb Drug Targets 2026	1.0	0.735167
COLO 800	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.72934
mp6	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.917
U-266 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.399
Primary spermatocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.378
Skin Cutaneous Melanoma_SKCM_TCGA-ER-A19F-06A-11R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	3.155
gage	GeneRIF Biological Term Annotations	1.0	null
clathrin-coated vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.403
Hematopoietic cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.027
formation	GeneRIF Biological Term Annotations	1.0	null
Sickle cell disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.051
Carcinosarcoma	DisGeNET Gene-Disease Associations	1.0	null
496100366_TCx_no dementia_no TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.53524
Rarg	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	96.8917
RASDEGAFUSP ALFA	DGIdb Drug Targets 2026	1.0	5.88133
complexes	GeneRIF Biological Term Annotations	1.0	null
Liver sinusoidal endothelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.084
Malignant Peripheral Nerve Sheath Tumor	DisGeNET Gene-Disease Associations	1.0	null
Arid3b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	20.9129
mpp89	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.776
Chondrosarcoma	DisGeNET Gene-Disease Associations	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-D3-A51K-06A-11R-A266-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Blast cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.69
clathrin-coated endocytic vesicle membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.273
ZBTB7C	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	87.8761
COLO 201	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.987853
indicative	GeneRIF Biological Term Annotations	1.0	null
Metastatic Melanoma	DisGeNET Gene-Disease Associations	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-KC-A7F5-01A-11R-A33R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
basolateral nucleus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.02514
differently	GeneRIF Biological Term Annotations	1.0	null
Cataract	DisGeNET Gene-Disease Associations	1.0	null
trans-Golgi network transport vesicle membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.644
marker	GeneRIF Biological Term Annotations	1.0	null
proportions	GeneRIF Biological Term Annotations	1.0	null
Infratentorial cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.371
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.11074
zona incerta, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.978889
VIIIA, left, paravermis	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.61085
Clathrin coat of trans-Golgi network vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.645
Adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.325
GSE153443_1_v_3_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
Stage Iv Skin Melanoma	DisGeNET Gene-Disease Associations	1.0	null
SP in dorsomedial parietal cortex (area 7m)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.982956
p0444	GeneRIF Biological Term Annotations	1.0	null
prognosis	GeneRIF Biological Term Annotations	1.0	null
Colorectal adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.117
CAG cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.837
MZ in dorsolateral prefrontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.01891
lage1a	GeneRIF Biological Term Annotations	1.0	null
Endocrine gland cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.411
directed	GeneRIF Biological Term Annotations	1.0	null
thyroid	GeneRIF Biological Term Annotations	1.0	null
leukemialymphoma	GeneRIF Biological Term Annotations	1.0	null
Primary hematopoietic stem cells G-CSF-mobilized Female RO_01508	Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles	1.0	1.44957
Musculoskeletal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.708
immune	GeneRIF Biological Term Annotations	1.0	null
Skin disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.152
Prostate carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.492
Squamous Cell Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-FD-A3B5-01A-11R-A20F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Stage Iv Cutaneous Melanoma Ajcc V6 And V7	DisGeNET Gene-Disease Associations	1.0	null
Melanoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	3.271
inner CP in subgenual (subcallosal) cingulate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.07993
non-Hodgkin lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.28
Lip And Oral Cavity Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
outer CP in primary auditory cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.23409
example	GeneRIF Biological Term Annotations	1.0	null
Lung adenocarcinoma_LUAD_TCGA-78-8640-01A-11R-2403-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Male reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	3.057
positive	GeneRIF Biological Term Annotations	1.0	null
Hepatitis	DisGeNET Gene-Disease Associations	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A29R-06A-11R-A18T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Esophageal cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.926
Serine C-palmitoyltransferase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.53
Carcinosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.103
Liver cirrhosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.354
Male reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.432
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A2GB-06A-11R-A18T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCI-N417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.25338
Cervical Cancer	DisGeNET Gene-Disease Associations	1.0	null
overexpression	GeneRIF Biological Term Annotations	1.0	null
T cell receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.613
poor	GeneRIF Biological Term Annotations	1.0	null
evaluated	GeneRIF Biological Term Annotations	1.0	null
Agammaglobulinemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.013
Hypothyroidism	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.098
Lung adenocarcinoma_LUAD_TCGA-55-8507-01A-11R-2403-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Bladder carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.471
Peripheral T-cell lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.608
highest	GeneRIF Biological Term Annotations	1.0	null
Testis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	3.33
12917485-Table7	GeneSigDB Published Gene Signatures	1.0	null
Epsilon DNA polymerase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.598
Renal cell carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.998
Hematopoietic system	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.961
highly	GeneRIF Biological Term Annotations	1.0	null
PMC7397849-supp_gad.338681.120_Supplemental_Table_S3.xlsx-S3K_Peaks_wtYAP1_TEAD4-Unnamed_14_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
given	GeneRIF Biological Term Annotations	1.0	null
Salivary Gland Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
Invasive ductal carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.107
ipi1	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.614
CTCF_A549_hg19_6	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Adult Fibrosarcoma	DisGeNET Gene-Disease Associations	1.0	null
Plasma cell neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.438
tetraspanin-enriched microdomain	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.132
Rheumatoid arthritis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.065
Skin Cutaneous Melanoma_SKCM_TCGA-GN-A4U8-06A-11R-A32P-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ASCL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	92.3756
least	GeneRIF Biological Term Annotations	1.0	null
Acute myeloid leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.095
cd8	GeneRIF Biological Term Annotations	1.0	null
plastid-encoded plastid RNA polymerase complex B	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.653
p0672	GeneRIF Biological Term Annotations	1.0	null
Dedifferentiated liposarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.04
Bladder Urothelial Carcinoma_BLCA_TCGA-K4-A83P-01A-11R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
macrophages	GeneRIF Biological Term Annotations	1.0	null
cellular_component	LOCATE Predicted Protein Localization Annotations	1.0	null
Primary Malignant Neoplasm Of Lung	DisGeNET Gene-Disease Associations	1.0	null
Thymus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.933
female reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.618603
GSE216757_4_v_1_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
circulating	GeneRIF Biological Term Annotations	1.0	null
Gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.859
CHD7-19251738-MESC-mouse	ChEA Transcription Factor Binding Site Profiles	1.0	null
superior colliculus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	2.02127
Skeletal muscle cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.626
Melanoma	DisGeNET Gene-Disease Associations	1.0	null
Ovarian Neoplasm	DisGeNET Gene-Disease Associations	1.0	null
SP in subgenual (subcallosal) cingulate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.49621
antigen	GeneRIF Biological Term Annotations	1.0	null
Desmoplastic small round cell tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.57
NFYA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.634
male reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.841608
previous	GeneRIF Biological Term Annotations	1.0	null
Ovary	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.033
medial subdivision of area 10	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.22801
Bone marrow cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.936
Plasmacytoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.527
UACC-812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.03018
Superficial basal cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.457
incidence	GeneRIF Biological Term Annotations	1.0	null
ipilimumab	GeneRIF Biological Term Annotations	1.0	null
iiiiia	GeneRIF Biological Term Annotations	1.0	null
efficient	GeneRIF Biological Term Annotations	1.0	null
Endocrine system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.61
rpmi6666	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.607
PMC12179407-MCO2-6-e70261-s004.xlsx-up_TET3-KO_PQ_vs_Cas9_PQ-Unnamed_10_TET3	Rummagene Transcription Factor Associations 2026	1.0	null
treg	GeneRIF Biological Term Annotations	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A2MC-06A-12R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SG in inferolateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.26708
Nasopharyngeal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.514
observations	GeneRIF Biological Term Annotations	1.0	null
Gastrointestinal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.627
Renal carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.361
Skin Cutaneous Melanoma_SKCM_TCGA-ER-A19B-06A-11R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-FC-A66V-01A-21R-A30B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
mesenchymal cell neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.651298
Measles	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.327
Disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	3.14
Blood protein disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.679
showing	GeneRIF Biological Term Annotations	1.0	null
Melanoma in congenital melanocytic nevus	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.022
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.255241
treatment	GeneRIF Biological Term Annotations	1.0	null
GARP complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.712
germinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.506507
PANC 05.04	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.85364
Hand1::Tcf3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	34.4483
ETV5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.8889
B-CPAP cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.557
Extracellular space	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.424
Myeloid leukemia cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.578
tool	GeneRIF Biological Term Annotations	1.0	null
TCF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	49.4894
Stat5a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	38.7118
Lymphoid progenitor cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.61
spontaneously	GeneRIF Biological Term Annotations	1.0	null
496100408_PCx_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.16611
engages	GeneRIF Biological Term Annotations	1.0	null
MALME-3M cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.723
Npas2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	29.5156
496100382_PCx_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.65016
intracellular	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Prostate Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
HT-29	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.27201
Acute leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.184
increases	GeneRIF Biological Term Annotations	1.0	null
Female reproductive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.99
present	GeneRIF Biological Term Annotations	1.0	null
USF2	JASPAR Predicted Transcription Factor Targets	1.0	null
dorsomedial hypothalamic nucleus, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.32956
Ewing's sarcoma family tumor cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.602
Lung adenocarcinoma_LUAD_TCGA-62-A470-01A-11R-A24H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Secondary Malignant Neoplasm Of Lymph Node	DisGeNET Gene-Disease Associations	1.0	null
Retinoblastoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.132
had	GeneRIF Biological Term Annotations	1.0	null
RCM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.27274
Urogenital system	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.852
Liposarcoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.696
Vesicle coat	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.499
T-lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	3.127
ssx1	GeneRIF Biological Term Annotations	1.0	null
Trigeminal Neuralgia	DisGeNET Gene-Disease Associations	1.0	null
Spi1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	46.751
RARG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.7587
SP9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	213.436
lateral reticular nucleus (principal part)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.09108
SK-MEL cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.268
GSE201110_0_v_1_sirt4_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Lymphoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.701
any	GeneRIF Biological Term Annotations	1.0	null
therapy	GeneRIF Biological Term Annotations	1.0	null
SUM159PT	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.712514
Tetanus	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.968
Childhood Neuroblastoma	DisGeNET Gene-Disease Associations	1.0	null
Colon carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.78
Spermatocytoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.602
MHC class I protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.087
Prostate adenocarcinoma_PRAD_TCGA-YL-A8SJ-01B-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
parataenial nucleus of thalamus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.05937
shown	GeneRIF Biological Term Annotations	1.0	null
Influenza	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.902
Bladder	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.929
Lung carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.667
SKW-3 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.502
MKN-45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.928318
Esophageal squamous epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.585
Mafg	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	53.4063
clinical	GeneRIF Biological Term Annotations	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-F7-A624-01A-22R-A30B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
IM-9 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.938
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055411
promoter	GeneRIF Biological Term Annotations	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-37-A5EM-01A-21R-A27Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lung adenocarcinoma_LUAD_TCGA-55-5899-01A-11R-1628-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC7176284-pcbi.1007753.s008.xlsx-2_MYCN-NA_NBL_Multimodal_Genes-gene_MYCN	Rummagene Transcription Factor Associations 2026	1.0	null
clathrin-coated endocytic vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.222
epidermis	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Esophagus - Gastroesophageal Junction	GTEx Tissue Gene Expression Profiles 2023	1.0	7.21239
sensitive	GeneRIF Biological Term Annotations	1.0	null
well-differentiated liposarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.624
OVCAR-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.69156
Plasmacytoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.77
Smooth muscle cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.932
Wt1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	73.9552
Crus I, right, paravermis	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.60617
Lymphoma	DisGeNET Gene-Disease Associations	1.0	null
Immunoglobulin complex, circulating	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.153
USF2_02_25	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	5.73471
medial subdivision of central nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.38497
samples	GeneRIF Biological Term Annotations	1.0	null
blood vessel	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057231
tight	GeneRIF Biological Term Annotations	1.0	null
Lung adenocarcinoma_LUAD_TCGA-05-4382-01A-01R-1206-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
recombinant	GeneRIF Biological Term Annotations	1.0	null
Rarb	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	78.1855
VIIAt	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.35678
Pelvis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.087
Cardiovascular cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.62
Rectum adenocarcinoma_READ_TCGA-EI-6514-01A-11R-1736-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Type III protein secretion system complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.043
neuroblastoma	GeneRIF Biological Term Annotations	1.0	null
MHC class II protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.673
G122	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.98866
blast cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061556
Placenta	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.974
ZNF449	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	66.9629
Hmx2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	38.9235
CTCF_HeLa-S3_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Root	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.661
B16-F10 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.945
gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.35743
targeting	GeneRIF Biological Term Annotations	1.0	null
FEV	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.8037
grade	GeneRIF Biological Term Annotations	1.0	null
496100505_TCx_possible Alzheimer's disease_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.37668
PAX5_GM12878_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-PN-A8MA-01A-11R-A36F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lung cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.637
Dinoflagellate epicone	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.947
EPLC-272H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.16445
B-cell lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.161
Rectum cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.04
ASTRA complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.103
cell part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
IgG immunoglobulin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.328
FIGLA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.5199
retroparafascicular area of thalamus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.1068
Zic3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	39.2266
Breast cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.516
lateral hypothalamic area, anterior region, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.94386
hepatocellular	GeneRIF Biological Term Annotations	1.0	null
multiple	GeneRIF Biological Term Annotations	1.0	null
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-DS-A3LQ-01A-21R-A21T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CN-A49A-01A-11R-A24H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CTCF_MCF-7_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SK-MEL-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.772
Intrinsic component of organelle membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.777
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-A45W-01A-11R-A24Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Monocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.173
later	GeneRIF Biological Term Annotations	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-90-A4ED-01A-31R-A24Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
light	GeneRIF Biological Term Annotations	1.0	null
cell part	LOCATE Predicted Protein Localization Annotations	1.0	null
pallidohypothalamic nucleus, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.3951
CTCF_K562_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
intracellular membrane-bounded organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
lesions	GeneRIF Biological Term Annotations	1.0	null
intracellular part	LOCATE Curated Protein Localization Annotations	1.0	null
intracellular part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Ec	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.877
differences	GeneRIF Biological Term Annotations	1.0	null
Ascl2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	117.011
centrosome	LOCATE Curated Protein Localization Annotations	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-RP-A695-06A-11R-A311-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Car cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.615
Nobox	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	20.3684
Sox5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	24.6129
WM-115 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.528
MS751	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.87201
demonstrated	GeneRIF Biological Term Annotations	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-V1-A8X3-01A-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
primary	GeneRIF Biological Term Annotations	1.0	null
Cell surface	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.714
easily	GeneRIF Biological Term Annotations	1.0	null
direct	GeneRIF Biological Term Annotations	1.0	null
interleukin-6 receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.764
p1.htr	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.925
Hybridoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.194
ZEB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.1192
advanced	GeneRIF Biological Term Annotations	1.0	null
antibody	GeneRIF Biological Term Annotations	1.0	null
expressing	GeneRIF Biological Term Annotations	1.0	null
B-lymphoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.057
dnamethyltransferase	GeneRIF Biological Term Annotations	1.0	null
TFAP2E	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	77.8972
OVCA 429	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.956782
Tbx6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.7584
immunotherapy	GeneRIF Biological Term Annotations	1.0	null
Pharyngeal Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
protein-cysteine S-palmitoyltransferase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.53
EL-4 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.353
especially	GeneRIF Biological Term Annotations	1.0	null
Vaccinia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.161
a24	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.926
PMC7397849-supp_gad.338681.120_Supplemental_Table_S3.xlsx-S3N_Peaks_YAP1FAM118B_TEAD4-Unnamed_14_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
Plasmacytoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.277
ZNF582	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.2969
CTBP1_02_41	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	2.70044
interleukin-12 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.459
lead	GeneRIF Biological Term Annotations	1.0	null
low	GeneRIF Biological Term Annotations	1.0	null
Sarcoma_SARC_TCGA-Z4-A9VC-01A-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Hairy cell leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.017
testis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.12615
Esophagus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.541
VIIB	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.19387
NK-92 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.31
subtype	GeneRIF Biological Term Annotations	1.0	null
Endometriosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.555
unrelated	GeneRIF Biological Term Annotations	1.0	null
cell property	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.076096
HIC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.8238
T-lymphoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.566
CTCF_skin fibroblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Neuroendocrine tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.072
PMC12619835-41467_2025_66007_MOESM8_ESM.xlsx-Classical_KLF5_peaks-Gene_Name_KLF5	Rummagene Transcription Factor Associations 2026	1.0	null
ldr7	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.772
Liposarcoma	DisGeNET Gene-Disease Associations	1.0	null
Clathrin vesicle coat	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.603
intracellular part	LOCATE Predicted Protein Localization Annotations	1.0	null
Prostate gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.106
using	GeneRIF Biological Term Annotations	1.0	null
Lung adenocarcinoma_LUAD_TCGA-78-7155-01A-11R-2039-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
IZ in lateral temporal-occipital cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.35399
b95.8	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.507
calreticulin	GeneRIF Biological Term Annotations	1.0	null
status	GeneRIF Biological Term Annotations	1.0	null
vivo	GeneRIF Biological Term Annotations	1.0	null
skin	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057876
Respiratory system	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.317
Nfatc2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	40.4344
Gastroesophageal junction adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.122
High endothelial venule	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.071
Brain cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.709
nsclc	GeneRIF Biological Term Annotations	1.0	null
Neoplasm Metastasis	DisGeNET Gene-Phenotype Associations	1.0	null
FLI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.7779
Extraskeletal myxoid chondrosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.11
SCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.98866
Diffuse midline glioma, H3 K27M-mutant	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.097
Prostate adenocarcinoma_PRAD_TCGA-G9-6363-11A-01R-1789-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
general	GeneRIF Biological Term Annotations	1.0	null
dorsal subdivision of VLC	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.02103
corl311	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.957
Reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.756
Lymphocytic leukemia cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.682
Sarcoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.626
deep layers of olfactory entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.14788
MTF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.1511
Blood coagulation disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.518
Notochordal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.241
hs27	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.623
Palmitoyltransferase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.513
AP-2 adaptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.279
LCLC-97TM1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.839334
Skin Cutaneous Melanoma_SKCM_TCGA-D3-A51E-06A-11R-A266-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
496100620_FWM_possible Alzheimer's disease_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.60198
VIIIA	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.28648
hematopoietic stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.221755
gonad	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.09518
Bone marrow	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.165
Anus cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.284
Nkx3-1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	17.5064
T47D	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.06864
Malignant Pleural Mesothelioma	DisGeNET Gene-Disease Associations	1.0	null
Ovary epithelium cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.629
extraordinarily	GeneRIF Biological Term Annotations	1.0	null
NCI-H1299	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.888571
Lung adenocarcinoma_LUAD_TCGA-86-8585-01A-11R-2403-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
496100532_FWM_no dementia_no TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.41635
Lung adenocarcinoma_LUAD_TCGA-44-5644-01A-21R-2039-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Mouth disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.226
SP3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	214.499
lateral hypothalamic area, anterior region, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.60679
clathrin-coated vesicle membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.595
SW 780	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.854331
Gastric adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.273
Lung	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.32
Recurrent Tumor	DisGeNET Gene-Phenotype Associations	1.0	null
Arthritis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.197
PMC7397849-supp_gad.338681.120_Supplemental_Table_S3.xlsx-S3K_Peaks_wtYAP1_TEAD4-Unnamed_11_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
Vesicular Stomatitis	DisGeNET Gene-Disease Associations	1.0	null
ZNF684	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	60.4918
Liver disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.227
GLIS3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	60.1613
Myeloid neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.62
Skin Cutaneous Melanoma_SKCM_TCGA-GF-A6C8-06A-12R-A311-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
lines	GeneRIF Biological Term Annotations	1.0	null
Sporozoite	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.725
Carcinoma Of Lung	DisGeNET Gene-Disease Associations	1.0	null
G121	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.08914
Intrinsic component of endoplasmic reticulum membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.917
HCC1806	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.687579
SMAD3_01_352	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	-1.0	-0.68489
flyrd18	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.949
Proteasome complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.053
Myxoid/Round Cell Liposarcoma	DisGeNET Gene-Disease Associations	1.0	null
Colorectal carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.751
Tuberculosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.299
MEL-745A cl. DS19 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.905
Skin Cutaneous Melanoma_SKCM_TCGA-BF-A3DM-01A-11R-A20F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
non-Hodgkin lymphoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.194
reticulotegmental nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.839551
Peritoneal carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.267
CTCF_LNCaP clone FGC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
serum	GeneRIF Biological Term Annotations	1.0	null
Colonic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.121
CTCF_GM13976_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Renal Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
KLE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.925968
Skin cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.194
Synovial Sarcoma	DisGeNET Gene-Disease Associations	1.0	null
Integrin alpha1-beta1 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.513
AP-1 adaptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.646
rhabdomyosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.352291
requires	GeneRIF Biological Term Annotations	1.0	null
Transfer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.65
Bone marrow cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.638
Lung squamous cell carcinoma_LUSC_TCGA-66-2777-01A-01R-1201-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
oncocytoma	GeneRIF Biological Term Annotations	1.0	null
Skeletal muscle cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.951
Leukopenia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.846
Adult Glioblastoma	DisGeNET Gene-Disease Associations	1.0	null
Cytolytic granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.335
Msgn1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	20.1827
predictive	GeneRIF Biological Term Annotations	1.0	null
Myeloid Leukemia	DisGeNET Gene-Disease Associations	1.0	null
T-cell acute lymphoblastic leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.479
opm2	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.586
SNAI2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.7903
allows	GeneRIF Biological Term Annotations	1.0	null
Diarrhea	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.567
Uveal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.618
Valproic Acid	CTD Gene-Chemical Interactions	1.0	null
Toxic encephalopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.83
Prostate adenocarcinoma_PRAD_TCGA-YL-A8HL-01A-11R-A36G-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.978
inhibitors	GeneRIF Biological Term Annotations	1.0	null
cannot	GeneRIF Biological Term Annotations	1.0	null
Pax7	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	34.4501
BT549	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.729816
Kidney renal papillary cell carcinoma_KIRP_TCGA-A4-7915-01A-11R-2204-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Disease by infectious agent	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.337
A-375 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.752
Melanocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.061
Bladder Urothelial Carcinoma_BLCA_TCGA-S5-A6DX-01A-11R-A31N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BAT3 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.113
SP8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	223.887
Mecom	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	53.1852
stratum basale	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.220152
Multiple myeloma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.522
MX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.998265
Oral squamous cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.021
KLF6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	111.184
targets	GeneRIF Biological Term Annotations	1.0	null
Smoldering myeloma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.255
VI, left, paravermis	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.958412
Brain Lower Grade Glioma_LGG_TCGA-DU-6392-01A-11R-1708-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
monocytes	GeneRIF Biological Term Annotations	1.0	null
Lymphoblastic leukemia cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.683
Meningioma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.503
Human papillomavirus infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.873
polymorphic layer of caudal subiculum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.40014
KLF9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	138.513
Crus II, right, lateral hemisphere	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.55712
Rectum adenocarcinoma_READ_TCGA-EI-6513-01A-21R-1736-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Sensory system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.627
Mafb	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	25.6736
proliferating	GeneRIF Biological Term Annotations	1.0	null
Internal male genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	3.104
496100577_FWM_probable Alzheimer's disease_TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.64513
Adult Lymphoma	DisGeNET Gene-Disease Associations	1.0	null
MZ in frontal polar cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.61127
Malignant peripheral nerve sheath tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.578
Nr1h3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	21.6631
dendritic	GeneRIF Biological Term Annotations	1.0	null
Encephalomyelitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.062
17088983-Table2a	GeneSigDB Published Gene Signatures	1.0	null
CBX3	ENCODE Transcription Factor Targets	1.0	null
characteristic	GeneRIF Biological Term Annotations	1.0	null
Ductal Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
High grade glioma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.202
Inherited metabolic disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.425
Childhood Malignant Peripheral Nerve Sheath Tumor	DisGeNET Gene-Disease Associations	1.0	null
histocompatibility	GeneRIF Biological Term Annotations	1.0	null
oculomotor nuclear complex, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.11498
Thymic medullary epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.334
uterine endometrium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.117128
Myeloid progenitor cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.841
Myeloid leukemia cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.679
CT-26 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.944
Vascular cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.634
Nfe2l2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	50.6019
squamous	GeneRIF Biological Term Annotations	1.0	null
Prostate disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.407
Mesothelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.199
REST	ENCODE Transcription Factor Targets	1.0	null
melanocyte	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Embryonal carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.035
CTCF_A549_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MCF10F	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.26482
presentation	GeneRIF Biological Term Annotations	1.0	null
Diffuse large B-cell lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.827
mesenchymal	GeneRIF Biological Term Annotations	1.0	null
organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.368149
Natural killer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.577
Apolipoprotein B mRNA editing enzyme complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.917
Musculoskeletal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.412
ChIP_CHD7_19251738	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
cell part	LOCATE Curated Protein Localization Annotations	1.0	null
496100578_FWM_possible Alzheimer's disease_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.37853
Rectum adenocarcinoma_READ_TCGA-F5-6810-01A-11R-1830-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SP5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	96.2606
CTCF_GM12891_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TCF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	53.1706
IX, left, lateral hemisphere	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.05331
KARPAS-1106P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.6931
Hepatobiliary disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.272
able	GeneRIF Biological Term Annotations	1.0	null
IgM immunoglobulin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.67
NCI-H1651	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.938108
Glioma	DisGeNET Gene-Disease Associations	1.0	null
Umbilical cord blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.446
ZNF148	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	426.671
Thorax	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.31
Head and neck carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.018
Gfi1b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	51.0772
496100403_TCx_probable Alzheimer's disease_TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.4076
Pou5f1::Sox2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	32.302
PAX5_GM12878_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Ocular cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.627
Autoimmune disease of central nervous system	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.181
RELB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.2502
Tropical Spastic Paraparesis	DisGeNET Gene-Disease Associations	1.0	null
cytoskeletal part	LOCATE Curated Protein Localization Annotations	1.0	null
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055093
Seminoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.503
Stomach Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
organism form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051203
Endoplasmic reticulum protein-containing complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.739
irestricted	GeneRIF Biological Term Annotations	1.0	null
Lymphoproliferative syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.263
intracellular	GeneRIF Biological Term Annotations	1.0	null
Central nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.05
Mononuclear phagocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.175
ZNF135	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	127.854
IZ in posterosuperior (dorsal) parietal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.941768
ETV3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.1638
non	GeneRIF Biological Term Annotations	1.0	null
vaccination	GeneRIF Biological Term Annotations	1.0	null
Squamous epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.341
Bladder Urothelial Carcinoma_BLCA_TCGA-YC-A89H-01A-11R-A36F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
496100323_FWM_possible Alzheimer's disease_TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	6.99671
Kidney disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.289
melanoma cell line	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
recruitment	GeneRIF Biological Term Annotations	1.0	null
Female reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.683
PMC6639357-41467_2019_11150_MOESM4_ESM.xlsx-SupTab1_Activated_genes_diffex-Supplementary_Data_1_Fold_change_and_p-value_of_all_activated_protein_coding_genes_upon_DNMT1-KO_DNMT1	Rummagene Transcription Factor Associations 2026	1.0	null
cd8positive	GeneRIF Biological Term Annotations	1.0	null
subgroup	GeneRIF Biological Term Annotations	1.0	null
Carcinoma, Ovarian Epithelial	DisGeNET Gene-Disease Associations	1.0	null
Liposarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.551
Large granular lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.444
Autosomal recessive disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.224
myeloma	GeneRIF Biological Term Annotations	1.0	null
Seminoma	DisGeNET Gene-Disease Associations	1.0	null
Bone marrow disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.635
VZ in hypothalamic portion	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.828179
Acute Inflammatory Demyelinating Polyneuropathy	DisGeNET Gene-Disease Associations	1.0	null
Herpes simplex	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.354
EBF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.9567
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-A6JM-01A-11R-A31N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Epithelial Ovarian Cancer	DisGeNET Gene-Disease Associations	1.0	null
Leukemia	DisGeNET Gene-Disease Associations	1.0	null
rate	GeneRIF Biological Term Annotations	1.0	null
renal	GeneRIF Biological Term Annotations	1.0	null
skin cancer cell	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Synaptonemal complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.793
Bhlha15	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	69.1039
antibodies	GeneRIF Biological Term Annotations	1.0	null
frequency	GeneRIF Biological Term Annotations	1.0	null
Bile duct disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.657
inferior olive, principal nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.96821
CTCF_pancreas_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
individual	GeneRIF Biological Term Annotations	1.0	null
Central nervous system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.212
Biphasic synovial sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.024
Bladder Urothelial Carcinoma_BLCA_TCGA-GU-A42Q-01A-11R-A23W-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
JY cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.993
vaccine	GeneRIF Biological Term Annotations	1.0	null
Tumor necrosis factor receptor superfamily complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.245
ihc	GeneRIF Biological Term Annotations	1.0	null
624 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.187
l57.23	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.868
magnocellular division of VA	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.09883
Breast disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.514
pro-B-lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.521
more	GeneRIF Biological Term Annotations	1.0	null
internal female genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055137
Gastrointestinal stromal tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.517
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-EA-A410-01A-11R-A32Y-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lymph node	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.688
Tcf12	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	56.2035
cancers	GeneRIF Biological Term Annotations	1.0	null
1301 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.137
prostate	GeneRIF Biological Term Annotations	1.0	null
SW 403	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.44165
Neuroblastoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.198
Thalassemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.111
Pigment granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.201
Peripheral Nerve Sheath Neoplasm	DisGeNET Gene-Disease Associations	1.0	null
HCC193	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.59035
animal	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Nr1h2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	15.468
CAL-85-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03969
Blood platelet disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.524
A-498 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.611
ihcrtpcr	GeneRIF Biological Term Annotations	1.0	null
parafascicular nucleus of thalamus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.88082
time	GeneRIF Biological Term Annotations	1.0	null
superior colliculus, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.910939
496100622_HIP_no dementia_no TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.06241
ELK3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.0156
Embryonal rhabdomyosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.023
CTCF_LNCaP clone FGC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cytogenetic	GeneRIF Biological Term Annotations	1.0	null
Vascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.456
PMC5932236__F4	PFOCR Pathway Figure Associations 2023	1.0	null
DAUDI cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.769
Ovarian surface epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.656
cease	GeneRIF Biological Term Annotations	1.0	null
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-DS-A1OC-01A-11R-A14Y-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CTCF_MCF-7_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Runx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	23.5785
Colon cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.129
Female reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.921
Somatic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.781
Basal cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.485
Naive T-lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.173
PAX5	ENCODE Transcription Factor Targets	1.0	null
Anus disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.141
stratum oriens of rostral CA1	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.07609
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.16445
Fibrosarcoma	DisGeNET Gene-Disease Associations	1.0	null
Ewing's family tumor cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.885
VIIB, left, paravermis	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.28604
Lymphoid follicle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.965
MHC protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.701
Hormone Refractory Prostate Cancer	DisGeNET Gene-Disease Associations	1.0	null
Liver And Intrahepatic Biliary Tract Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
Sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.759
Oviduct epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.67
Breast Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
Clathrin coat of endocytic vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.279
Biliary tract cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.76
supramammillary nucleus, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.870885
CTCF_GM10248_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
serve	GeneRIF Biological Term Annotations	1.0	null
Lung adenocarcinoma_LUAD_TCGA-38-4630-01A-01R-1206-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
including	GeneRIF Biological Term Annotations	1.0	null
spindle cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.352227
cancertestis	GeneRIF Biological Term Annotations	1.0	null
Zic1::Zic2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	40.0137
Primary lysosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.873
IX	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	2.07467
mmspecific	GeneRIF Biological Term Annotations	1.0	null
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-FA-A4BB-01A-11R-A31O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Phosphatase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.925
gracile nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.915583
CTCF_spleen_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-FS-A1ZA-06A-11R-A18T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
polymeric	GeneRIF Biological Term Annotations	1.0	null
Disseminated Malignant Neoplasm	DisGeNET Gene-Phenotype Associations	1.0	null
Transitional cell carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.679
Colitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.749
Nfatc1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	35.2828
NRF1	JASPAR Predicted Transcription Factor Targets	1.0	null
Adult Liver Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
Prdm15	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	36.6057
interleukin-35 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.495
Lung adenocarcinoma_LUAD_TCGA-44-8119-01A-11R-2241-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Thymoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.101
node	GeneRIF Biological Term Annotations	1.0	null
V, right, paravermis	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.25121
Anaplastic astrocytoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.104
ZIM3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.8942
MZ in caudal cingulate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.10991
express	GeneRIF Biological Term Annotations	1.0	null
Pancreatic adenocarcinoma_PAAD_TCGA-3A-A9IR-01A-11R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CHD7-19251738-MESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
breast	GeneRIF Biological Term Annotations	1.0	null
Spleen	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.644
Adult Malignant Peripheral Nerve Sheath Tumor	DisGeNET Gene-Disease Associations	1.0	null
Lymphatic system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.486
vein	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.104489
ctcf	GeneRIF Biological Term Annotations	1.0	null
synovial sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.579661
Pheochromocytoma and Paraganglioma_PCPG_TCGA-W2-A7HC-01A-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.166768
Carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.917
angiosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.526904
Mixed cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.232
lm7	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.55
MYC_endothelial cell of umbilical vein_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
synovium cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.579661
serous	GeneRIF Biological Term Annotations	1.0	null
VIIIB, left, lateral hemisphere	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.890554
CTCF_H1-hESC_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
exploited	GeneRIF Biological Term Annotations	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-UY-A78P-01A-12R-A36F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-DD-A1EJ-01A-11R-A155-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
KLF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	167.473
Microcytic anemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.044
Kaposi's sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.261
Bladder Urothelial Carcinoma_BLCA_TCGA-BT-A2LA-01A-11R-A18C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.49
Fetal Brain Male	Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles	-1.0	-0.863664
skw3	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.71
GLIS2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	72.8912
Benign Prostatic Hyperplasia	DisGeNET Gene-Disease Associations	1.0	null
Cytotoxic T-lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.824
frequently	GeneRIF Biological Term Annotations	1.0	null
correlation	GeneRIF Biological Term Annotations	1.0	null
trials	GeneRIF Biological Term Annotations	1.0	null
Synovium cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	3.169
EFM-192A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.27201
Monoclonal gammopathy of uncertain significance	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.71
GSE151090_0_v_3_verteporfin_human	RummaGEO Drug Perturbation Signatures	1.0	null
Extrachromosomal DNA	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.746
Lef1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	35.2525
Irf1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	56.0685
YY1	JASPAR Predicted Transcription Factor Targets	1.0	null
cell	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
SUM225CWN	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.850791
Parasitic protozoa infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.282
Small cell lung cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.834
Aphasia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.014
Angiosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.716
ZNF677	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.9633
rarely	GeneRIF Biological Term Annotations	1.0	null
Distal Aortic Dissection	DisGeNET Gene-Disease Associations	1.0	null
appears	GeneRIF Biological Term Annotations	1.0	null
HCC1143	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.928318
Hepatitis B	DisGeNET Gene-Disease Associations	1.0	null
Large cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.265
visualized	GeneRIF Biological Term Annotations	1.0	null
versatile	GeneRIF Biological Term Annotations	1.0	null
496100587_FWM_possible Alzheimer's disease_TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.23743
Langerhans cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.5
Azurophil granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.881
Immunological synapse	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.891
dcs	GeneRIF Biological Term Annotations	1.0	null
ERF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8744
EGR2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.5191
Head and Neck squamous cell carcinoma_HNSC_TCGA-CN-6992-01A-11R-1915-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Solid Neoplasm	DisGeNET Gene-Phenotype Associations	1.0	null
humoral	GeneRIF Biological Term Annotations	1.0	null
dorsorostral division of MFC (area 32)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.72884
Dermatofibrosarcoma	DisGeNET Gene-Disease Associations	1.0	null
SNU-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13153
Acute Myeloid Leukemia_LAML_TCGA-AB-2867-03A-01T-0734-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Meningioma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.184
Embryonal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.036
CHD7	ChEA Transcription Factor Targets	1.0	null
displayed	GeneRIF Biological Term Annotations	1.0	null
GSE135030_3_v_9_fludarabine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Crus I, left, lateral hemisphere	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.09254
19139136-TableS3	GeneSigDB Published Gene Signatures	1.0	null
outer CP in temporal polar cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.93384
cardiovascular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05815
B-cell acute lymphoblastic leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.949
16818663-Table3	GeneSigDB Published Gene Signatures	1.0	null
B-lymphoblastic leukemia/lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.727
MOPC-315 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.111
Agranulocytosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.72
Plasma cell leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.092
Central Neuroblastoma	DisGeNET Gene-Disease Associations	1.0	null
Uterine disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.085
Disease of metabolism	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.527
Retinal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.193
TFAP2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	216.781
granule	GeneRIF Biological Term Annotations	1.0	null
epitope	GeneRIF Biological Term Annotations	1.0	null
SK-MEL-5 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.795
HCC827	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.839888
Spermatocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.576
Kidney renal clear cell carcinoma_KIRC_TCGA-A3-A8CQ-01A-11R-A37O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Endocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.882
hormone	GeneRIF Biological Term Annotations	1.0	null
Thoracic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.517
Oil secretion	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.526
overexpressed	GeneRIF Biological Term Annotations	1.0	null
Diabetes mellitus	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.214
papillary	GeneRIF Biological Term Annotations	1.0	null
In situ carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.555
Nfat5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	41.3596
Head and neck cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.219
Adult Myelodysplastic Syndrome	DisGeNET Gene-Disease Associations	1.0	null
VI, right, lateral hemisphere	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.07457
magea36	GeneRIF Biological Term Annotations	1.0	null
interleukin-2 receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.844
homology	GeneRIF Biological Term Annotations	1.0	null
Gonad	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	3.288
PMC5352183-oncotarget-08-624-s006.xlsx-Table_S10-27_TP53-MSN_genes_concurrent_in_at_least_five_different_cancer_types_TP53	Rummagene Transcription Factor Associations 2026	1.0	null
latter	GeneRIF Biological Term Annotations	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-KU-A66S-01A-21R-A30B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Malignant cystadenoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.299
Cell envelope Sec protein transport complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.983
TYK-NU	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.609
GSE169205_4_v_7_sirt5_human	RummaGEO Gene Perturbation Signatures	1.0	null
Malignant adenoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.295
magea	GeneRIF Biological Term Annotations	1.0	null
Pleural fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.731
Nervous system benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.139
Head and Neck squamous cell carcinoma_HNSC_TCGA-CN-6022-01A-21R-1686-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CTCF_lung_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GSE98898_7_v_1_hoxa1_human	RummaGEO Gene Perturbation Signatures	1.0	null
ANTI-NY-ESO-1 IMMUNOTHERAPEUTIC GSK-2241658A	DGIdb Drug Targets 2026	1.0	8.822
intracellular organelle	LOCATE Curated Protein Localization Annotations	1.0	null
ZR75B	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.18143
Mesothelioma_MESO_TCGA-MQ-A6BS-01A-12R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Triple Negative Breast Neoplasms	DisGeNET Gene-Disease Associations	1.0	null
nonsmallcell	GeneRIF Biological Term Annotations	1.0	null
sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.114749
strongly	GeneRIF Biological Term Annotations	1.0	null
Peripheral nervous system neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.237
Bile duct cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.732
Oropharyngeal cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.508
skin	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Sox6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	46.8394
Muscle cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.024
structure	GeneRIF Biological Term Annotations	1.0	null
SAOS-2 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.859
similar	GeneRIF Biological Term Annotations	1.0	null
Anemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.633
ovarian	GeneRIF Biological Term Annotations	1.0	null
Meningioma, Benign, No Icd-O Subtype	DisGeNET Gene-Disease Associations	1.0	null
SP in posterior parahippocampal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.16144
liposarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.20742
Esrrg	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	32.1906
Primary bacterial infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.855
trimethylamine-N-oxide reductase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.514
GSE165334_2_v_0_dabrafenib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
abducens nucleus, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.983466
Gastroesophageal adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.381
tumorassociated	GeneRIF Biological Term Annotations	1.0	null
ZR7530	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.09658
Colon adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.363
Pparg::Rxra	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	42.9185
carcinosarcomas	GeneRIF Biological Term Annotations	1.0	null
Benign Neoplasm Of Breast	DisGeNET Gene-Disease Associations	1.0	null
Fibrosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.779
Urinary system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.572
intracellular non-membrane-bounded organelle	LOCATE Curated Protein Localization Annotations	1.0	null
Coronavirus infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.297
HS-SY-2 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.538
Pleural cavity	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.778
obtained	GeneRIF Biological Term Annotations	1.0	null
Smallpox	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.524
Sarcoma_SARC_TCGA-MJ-A850-01A-11R-A355-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Carcinoma, Transitional Cell	DisGeNET Gene-Disease Associations	1.0	null
Peripheral blood lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.208
monocyte-derived dendritic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.663
among	GeneRIF Biological Term Annotations	1.0	null
histological	GeneRIF Biological Term Annotations	1.0	null
PMC7397849-supp_gad.338681.120_Supplemental_Table_S3.xlsx-S3M_Peaks_YAP1MAMLD1_TEAD4-Unnamed_14_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
Embryonic germ cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.58
Malignant mesothelioma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.036
synovial	GeneRIF Biological Term Annotations	1.0	null
tumorinduced	GeneRIF Biological Term Annotations	1.0	null
intracellular organelle part	LOCATE Curated Protein Localization Annotations	1.0	null
Cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	3.144
Acquired metabolic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.097
Alveolar rhabdomyosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.3
Tumour Thrombosis	DisGeNET Gene-Disease Associations	1.0	null
sequential	GeneRIF Biological Term Annotations	1.0	null
Inclusion body	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.518
Hand1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	73.8437
Crus I, left, paravermis	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.842871
Pleural mesothelioma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.56
immunohistochemical	GeneRIF Biological Term Annotations	1.0	null
ZBTB11	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.0372
Phycobilisome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.513
Alveolar soft part sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.833
germ cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.449116
per	GeneRIF Biological Term Annotations	1.0	null
bicistronic	GeneRIF Biological Term Annotations	1.0	null
OCI-M1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.21947
Malignant pleural mesothelioma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.498
Pleural cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.542
roles	GeneRIF Biological Term Annotations	1.0	null
RARB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.1803
IZ in dorsomedial frontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	2.24987
15781621-Table1	GeneSigDB Published Gene Signatures	1.0	null
KYSE-30 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.559
Inflammatory bowel disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.731
CTCF_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Regulatory T-lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.49
MOLM-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13219
Peripheral blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.785
MCM8-MCM9 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.556
Demyelinating disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.164
Connective tissue cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.728
Skin Cutaneous Melanoma_SKCM_TCGA-FR-A726-01A-11R-A32P-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
pre-B-lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.525
Hoxd13	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	39.5821
uterine	GeneRIF Biological Term Annotations	1.0	null
SK-MES-1	COSMIC Cell Line Gene CNV Profiles	1.0	3.12177
Childhood Synovial Sarcoma	DisGeNET Gene-Disease Associations	1.0	null
link	GeneRIF Biological Term Annotations	1.0	null
Rhox11	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	30.0018
Fibroblastoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.074
Kidney Chromophobe_KICH_TCGA-KO-8404-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Hepatic artery	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.278
lymph	GeneRIF Biological Term Annotations	1.0	null
Large intestine cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.437
Head and neck squamous cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.971
Genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.643
Nephroblastoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.047
Paget Disease	DisGeNET Gene-Disease Associations	1.0	null
fh8	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.723
Mature T-cell and NK-cell lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.608
innate	GeneRIF Biological Term Annotations	1.0	null
vascular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05956
Esophageal carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.673
PRPF4B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.29125
allogeneic	GeneRIF Biological Term Annotations	1.0	null
Ascites	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.678
cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.460506
Groin	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.761
Ovary cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.745
em2	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.646
stem	GeneRIF Biological Term Annotations	1.0	null
MHC class I peptide loading complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.961
cytoplasm	LOCATE Curated Protein Localization Annotations	1.0	null
Renal cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.352
magea4	GeneRIF Biological Term Annotations	1.0	null
Myeloid dendritic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.141
VIIIB	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.10865
IV	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.903182
Lupus erythematosus	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.132
Sarcoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.483
Tendon sheath	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.15
Allergic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.15
MPC-11 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.564
Barrett's esophagus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.519
th2type	GeneRIF Biological Term Annotations	1.0	null
X-linked severe combined immunodeficiency	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.172
GSE224004,GSE224005_0_v_8_chd4_human	RummaGEO Gene Perturbation Signatures	1.0	null
Retinal cell cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.132
cd86 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.538
Lung squamous cell carcinoma_LUSC_TCGA-NK-A5D1-01A-11R-A26W-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Nr2e1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.6545
characteristics	GeneRIF Biological Term Annotations	1.0	null
VIIIA, left, lateral hemisphere	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.41784
Pleomorphic liposarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.731
normal	GeneRIF Biological Term Annotations	1.0	null
bc96	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.847
concomitantly	GeneRIF Biological Term Annotations	1.0	null
subgenual (subcallosal) division of MFC (area 25)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.02253
Bladder Urothelial Carcinoma_BLCA_TCGA-ZF-A9RC-01A-11R-A38B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cases	GeneRIF Biological Term Annotations	1.0	null
microtubule organizing center	LOCATE Curated Protein Localization Annotations	1.0	null
Lung adenocarcinoma_LUAD_TCGA-38-4631-01A-01R-1755-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lhx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	38.05
NCI-H596	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.987853
KLF15	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	192.825
Parasitic infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.263
monitoring	GeneRIF Biological Term Annotations	1.0	null
Carcinoma, Small Cell	DisGeNET Gene-Disease Associations	1.0	null
CTCF_GM13977_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
major	GeneRIF Biological Term Annotations	1.0	null
conjugate	GeneRIF Biological Term Annotations	1.0	null
Mature B-cell neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.551
WIDR	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.27274
Endoplasmic reticulum palmitoyltransferase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.53
Muscular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.783
pre-malignant neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.673
Null cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.432
Bladder Urothelial Carcinoma_BLCA_TCGA-FD-A6TC-01A-21R-A33J-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
COLO 794	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.860881
Transitional cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.252
alpha-beta T cell receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.224
Autoimmune disease of skin and connective tissue	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.504
Merkel cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.738
Immunoglobulin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.338
negative	GeneRIF Biological Term Annotations	1.0	null
Arnt::Hif1a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.9615
Malaria	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.327
cingulate gyrus, retrosplenial part, right, superior bank of gyrus	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.36777
Zfp335	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	28.0952
Monogenic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.458
Rabies	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.191
igr37	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.621
Th1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.305
Malignant spindle cell melanoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.101
majority	GeneRIF Biological Term Annotations	1.0	null
epigenetic	GeneRIF Biological Term Annotations	1.0	null
Lhx8	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	22.2217
Synaptonemal structure	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.786
analyzed	GeneRIF Biological Term Annotations	1.0	null
REST_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-QH-A6XC-01A-12R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Clear cell sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.409
KP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1988
Lung squamous cell carcinoma_LUSC_TCGA-37-4135-01A-01R-1100-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
EBV-B cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.698
Primary cutaneous T-cell non-Hodgkin lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.562
Oral cavity cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.189
ZNF343	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	73.1259
HEPA 1-6 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.693
Brain Lower Grade Glioma_LGG_TCGA-DU-6397-02A-12R-A36H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
mesothelioma	GeneRIF Biological Term Annotations	1.0	null
Malignant exocrine pancreas neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.798
outer CP in lateral temporal-occipital cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.912873
Liver hepatocellular carcinoma_LIHC_TCGA-G3-A7M9-01A-23R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Six3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	20.4532
Sox3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	28.4999
SMAD9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.32051
midbrain raphe nuclei, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.901737
CTCF_H54_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
epidermis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060508
HES5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.5893
Plasma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.926
pineal gland	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.26353
mp1	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.81
Immune system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.458
layer III of rostral entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.05469
each	GeneRIF Biological Term Annotations	1.0	null
prognostic	GeneRIF Biological Term Annotations	1.0	null
interleukin-23 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.589
Intestinal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.438
Multiple myeloma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.667
Reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.904
C32TG	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.22968
Arnt	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	21.8
correlations	GeneRIF Biological Term Annotations	1.0	null
inner SZ in ventrolateral prefrontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.04309
caudal (posterior) extramural migratory stream	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.13146
magec1	GeneRIF Biological Term Annotations	1.0	null
only	GeneRIF Biological Term Annotations	1.0	null
locus ceruleus, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.00401
Bile duct carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.701
Epimastigote	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.679
Nucleosome disassembly/reassembly complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.541
ZNF549	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.7137
Immune system	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	3.016
anterior orbital gyrus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-2.68
Artery disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.131
cochlear nuclei, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.22357
Prostate adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.125
Clathrin coat of coated pit	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.278
Multiple Chronic Conditions	DisGeNET Gene-Disease Associations	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-37-5819-01A-01R-1635-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
internal male genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.901573
HEK-293-EBNA cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.513
Pharynx cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.633
Dermal dendritic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.272
Gastroesophageal junction	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.017
Cytosolic proteasome complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.569
KLF16	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	313.351
cytotoxic	GeneRIF Biological Term Annotations	1.0	null
lateral nucleus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.33142
Lung squamous cell carcinoma_LUSC_TCGA-NK-A5CR-01A-11R-A26W-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-P5-A5F0-01A-11R-A28M-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
integument	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051819
oe19	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.76
th1	GeneRIF Biological Term Annotations	1.0	null
Sarcoma_SARC_TCGA-DX-A8BN-01A-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Breast ductal carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.213
Desmoplastic	DisGeNET Gene-Disease Associations	1.0	null
mediates	GeneRIF Biological Term Annotations	1.0	null
nonsmall	GeneRIF Biological Term Annotations	1.0	null
Stat2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	87.3958
Liver hepatocellular carcinoma_LIHC_TCGA-RC-A6M6-01A-11R-A32O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PBMC cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.003
Bladder Urothelial Carcinoma_BLCA_TCGA-GU-A42P-01A-11R-A23W-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Spindle cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.296
three	GeneRIF Biological Term Annotations	1.0	null
Ewing's sarcoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.865
CaSki cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.997
Bile duct adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.703
Marrow	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.521
Uterine corpus cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.029
Osteosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.545
worse	GeneRIF Biological Term Annotations	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-KC-A7F3-01A-21R-A33R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Multiple myeloma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.024
nyeso1	GeneRIF Biological Term Annotations	1.0	null
basal ventral medial nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.09751
Fallopian tube cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.449
smooth muscle cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.48893
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A2MP-06A-11R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Cervix Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
non-membrane-bounded organelle	LOCATE Curated Protein Localization Annotations	1.0	null
CTCF_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cuneiform nucleus, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.840178
Neutropenia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.725
GSE151090_2_v_3_verteporfin_human	RummaGEO Drug Perturbation Signatures	1.0	null
Miller Dieker Syndrome	DisGeNET Gene-Disease Associations	1.0	null
Lynch syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.114
rendering	GeneRIF Biological Term Annotations	1.0	null
Vesicle membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.061
Adult Meningioma	DisGeNET Gene-Disease Associations	1.0	null
GLIS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.8378
germ cell cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.111408
SK-MEL-31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.08914
PMC7397849-supp_gad.338681.120_Supplemental_Table_S3.xlsx-S3L_Peaks_2SA-YAP1_TEAD4-Unnamed_14_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
Spinal cord disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.038
Endocytic vesicle membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.185
OVISE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.938108
Galectin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.357
Medulloblastoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.354
Male reproductive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	3.126
clones	GeneRIF Biological Term Annotations	1.0	null
HN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.98866
Rectum adenocarcinoma_READ_TCGA-CI-6624-01C-11R-1830-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Ovarian disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.644
cd34positive	GeneRIF Biological Term Annotations	1.0	null
Uveal melanoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.62
Gata3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	35.7475
amygdalostriatal transition area	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.985103
Fallopian tube disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.261
B-lymphocyte cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.498
erg	GeneRIF Biological Term Annotations	1.0	null
11823860-SuppTable3	GeneSigDB Published Gene Signatures	1.0	null
Endometrial cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.567
versus	GeneRIF Biological Term Annotations	1.0	null
JHH-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05678
pg13	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.596
Childhood Lymphoma	DisGeNET Gene-Disease Associations	1.0	null
Carcinogenesis	DisGeNET Gene-Phenotype Associations	1.0	null
Autosomal genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.411
mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.074684
PMC11266089-Table3.XLSX-Fig1_Disease_targets-TP53_TP53	Rummagene Transcription Factor Associations 2026	1.0	null
clathrin-coated pit	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.141
Synovial tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.108
gametocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.1234
12917485-Table9	GeneSigDB Published Gene Signatures	1.0	null
IRF4	ENCODE Transcription Factor Targets	1.0	null
Fc receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.609
Malignant Neoplasm	DisGeNET Gene-Disease Associations	1.0	null
VIIB, left, lateral hemisphere	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.09425
metastases	GeneRIF Biological Term Annotations	1.0	null
Mesothelioma	DisGeNET Gene-Disease Associations	1.0	null
CTCF_GM19238_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Arntl	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.2302
spermatocytoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.11015
Lung disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.682
Lung non-small cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.666
Liver Cirrhosis	DisGeNET Gene-Disease Associations	1.0	null
epidermal cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056648
OVCAR-3 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.457
plastid-encoded plastid RNA polymerase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.557
EBF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.4158
Leber congenital amaurosis 10	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.063
Dendrite cytoplasm	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.647
fibrosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.339073
Brain Lower Grade Glioma_LGG_TCGA-FG-A4MW-01A-11R-A26U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lymphoblastoid cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.849
Liver carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.204
PMC7397849-supp_gad.338681.120_Supplemental_Table_S3.xlsx-S3M_Peaks_YAP1MAMLD1_TEAD4-Unnamed_11_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
X-linked recessive disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.064
CTCF_GM19240_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
OVCAR433	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.50865
dermatofibrosarcoma protuberans	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.723694
NCI-H1975 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.652
EFM-192C	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.59183
Ovary epithelial cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.288
higher	GeneRIF Biological Term Annotations	1.0	null
Refractory Synovial Sarcoma	DisGeNET Gene-Disease Associations	1.0	null
Nr1h4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	20.5065
LETETRESGENE AUTOLEUCEL	DGIdb Drug Targets 2026	1.0	13.233
PAX5_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-DD-A39Y-01A-11R-A213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Seminoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.54
tumorreactive	GeneRIF Biological Term Annotations	1.0	null
Sec61 translocon complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.993
medial superior olive	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.53907
b78h1	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.543
GSE164874_5_v_14_prednisolone_human	RummaGEO Drug Perturbation Signatures	1.0	null
Hodgkin's lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.172
Kidney renal clear cell carcinoma_KIRC_TCGA-AS-3777-01A-01R-0864-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.561644
transplantation	GeneRIF Biological Term Annotations	1.0	null
PMC8202205-NIHMS1706275-supplement-Table_S1.xlsx-Mesend_D2_GATA6-dependent-SYMBOL_GATA6	Rummagene Transcription Factor Associations 2026	1.0	null
PMC9733061-13059_2022_2800_MOESM5_ESM.xlsx-Table_S4-Table_S4_Genes_assigned_to_JUNB_binding_sites_Each_peak_was_assigned_to_the_nearest_TSS_JUNB	Rummagene Transcription Factor Associations 2026	1.0	null
Biliary tract disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.654
Coelom	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.207
significant	GeneRIF Biological Term Annotations	1.0	null
B-lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.523
chromophobe	GeneRIF Biological Term Annotations	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-MV-A51V-01A-11R-A26T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Mastocytoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.636
B cell deficiency	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.03
lesser	GeneRIF Biological Term Annotations	1.0	null
Lung squamous cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.369
Gonadal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.653
Rix1 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.528
Abdominal Pain	DisGeNET Gene-Phenotype Associations	1.0	null
autoantibodies	GeneRIF Biological Term Annotations	1.0	null
17910759-TableS5	GeneSigDB Published Gene Signatures	1.0	null
Extracellular organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.087
foxp3	GeneRIF Biological Term Annotations	1.0	null
Leiomyosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.933
olfactory tubercle, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.873616
neoplasms	GeneRIF Biological Term Annotations	1.0	null
upregulate	GeneRIF Biological Term Annotations	1.0	null
Sarcoma_SARC_TCGA-UE-A6QT-01A-12R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Connective tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.423
Foxo3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	16.5445
Lower respiratory tract disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.661
Tumor Cell Invasion	DisGeNET Gene-Phenotype Associations	1.0	null
vast	GeneRIF Biological Term Annotations	1.0	null
occipital pole, left, inferior aspect	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.2246
gastrointestinal stromal tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.43227
whereas	GeneRIF Biological Term Annotations	1.0	null
melanoma cell	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Erysipelas	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.48
Cellular schwannoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.001
arcuate nucleus of hypothalamus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.994125
glioma	GeneRIF Biological Term Annotations	1.0	null
hypertrophy	GeneRIF Biological Term Annotations	1.0	null
Pheochromocytoma and Paraganglioma_PCPG_TCGA-QR-A6H4-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HCC1428	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04836
Corona	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.76
ZNF282	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	69.6878
MYC_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
pertinent	GeneRIF Biological Term Annotations	1.0	null
Liver Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
abilities	GeneRIF Biological Term Annotations	1.0	null
Dedifferentiated chondrosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.291
peptides	GeneRIF Biological Term Annotations	1.0	null
Uterine cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.111
Duodenum Mucosa	Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles	-1.0	-2.06429
Nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.294
after	GeneRIF Biological Term Annotations	1.0	null
gk1.5	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.832
Ovarian surface epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.018
GSE151090_5_v_3_verteporfin_human	RummaGEO Drug Perturbation Signatures	1.0	null
vector	GeneRIF Biological Term Annotations	1.0	null
Glucose metabolism disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.252
represents	GeneRIF Biological Term Annotations	1.0	null
GSE220668_0_v_1_ncapg_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Nr2e3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	31.9565
Zfx	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	51.6987
GATA2	JASPAR Predicted Transcription Factor Targets	1.0	null
Pancreatic adenocarcinoma_PAAD_TCGA-US-A774-01A-21R-A32O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
female reproductive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.718292
CTCF_A549_hg19_7	ENCODE Transcription Factor Binding Site Profiles	1.0	null
sp17	GeneRIF Biological Term Annotations	1.0	null
demonstrating	GeneRIF Biological Term Annotations	1.0	null
retroviral	GeneRIF Biological Term Annotations	1.0	null
degree	GeneRIF Biological Term Annotations	1.0	null
Stat5b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	39.0475
Mucosal melanoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.508
Renal cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.078
Nr2f6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	104.61
Crus II, left, lateral hemisphere	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.25424
gigantocellular reticular nuclei	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.941811
Root nodule	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.702
CTCF_kidney_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Endodermal sinus tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.079
CTCF_HepG2_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Colorectal Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
Thyroiditis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.258
vitro	GeneRIF Biological Term Annotations	1.0	null
Sox17	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	33.3566
integrated	GeneRIF Biological Term Annotations	1.0	null
pre-B acute lymphoblastic leukemia cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.374
FEZF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	54.1245
basal cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.268828
Small cell sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.607
Integumentary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.153
Uterine Carcinosarcoma_UCS_TCGA-N8-A4PQ-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
immunogenic	GeneRIF Biological Term Annotations	1.0	null
Autonomic nervous system neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.198
skeletal muscle cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.338707
Bone disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.655
IZ in frontal polar cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.0311
VZ in thalamic region	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.12325
CTCF_keratinocyte_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
context	GeneRIF Biological Term Annotations	1.0	null
Respiratory system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.77
malignant	GeneRIF Biological Term Annotations	1.0	null
Cancer stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.772
head	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.050697
inner SZ in caudal midinferior temporal cortex (area TF)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.26634
acid	GeneRIF Biological Term Annotations	1.0	null
japanese	GeneRIF Biological Term Annotations	1.0	null
isoform	GeneRIF Biological Term Annotations	1.0	null
Hoxa13	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	40.5459
Germ cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.401
Buffy coat	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.34
Sarcoma_SARC_TCGA-DX-A3LT-01A-12R-A21T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Clathrin adaptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.528
T-cell non-Hodgkin lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.767
cd4positive	GeneRIF Biological Term Annotations	1.0	null
Chronic myeloid leukemia cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.703
Peritoneal fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.724
dbtrg05mg	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.528
B95-8 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.783
ZBTB24	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	73.2572
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A3AG-06A-31R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
urogenital system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.481259
TUBA1B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.92201
Lymphoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.589
Adult T-Cell Lymphoma/Leukemia	DisGeNET Gene-Disease Associations	1.0	null
Actinic keratosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.221
SNU-475	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00497
STING complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.032
KLF13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.8237
arcuate nucleus of medulla, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.18079
independent	GeneRIF Biological Term Annotations	1.0	null
directly	GeneRIF Biological Term Annotations	1.0	null
Prdm14	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	16.4568
Acute Monocytic Leukemia	DisGeNET Gene-Disease Associations	1.0	null
responding	GeneRIF Biological Term Annotations	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-CH-5766-01A-11R-1580-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Chronic lymphocytic leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.999
MYC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.364
OVCA-5 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.996
cellular myxoid liposarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.5216
MYOD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.1664
represent	GeneRIF Biological Term Annotations	1.0	null
SG in lateral temporal-occipital cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.38751
saphenous vein	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.566828
Melanoma cell line	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Thyroid Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
Lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	3.083
received	GeneRIF Biological Term Annotations	1.0	null
Uroepithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.932
gastrointestinal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.044261
ZNF740	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	599.828
Adrenocortical carcinoma_ACC_TCGA-OR-A5KV-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Colorectal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.433
Prostatic Hyperplasia	DisGeNET Gene-Disease Associations	1.0	null
Diphtheria	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.597
Thoracic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.518
Cytoplasmic vesicle membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.066
TAP complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.298
lipomatous cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.20742
Bt	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.165
SPOTS complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.571
occipital pole, left, superior aspect	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.84177
CTCF_A549_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HT-55	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.928318
specimens	GeneRIF Biological Term Annotations	1.0	null
subgranular zone of caudal dentate gyrus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.29745
SG in primary visual cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.30831
oral	GeneRIF Biological Term Annotations	1.0	null
Brain disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.602
myxoid	GeneRIF Biological Term Annotations	1.0	null
16042785-tableS3	GeneSigDB Published Gene Signatures	1.0	null
Lung adenocarcinoma_LUAD_TCGA-44-7667-01A-31R-2066-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Hybridoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.499
SG in medial temporal-occipital cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	2.0111
uterus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.065583
recognize	GeneRIF Biological Term Annotations	1.0	null
Other source	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.317
496100379_TCx_probable Alzheimer's disease_no TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.41297
Skin Cutaneous Melanoma_SKCM_TCGA-D3-A3MR-06A-11R-A21D-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE216757_0_v_1_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
area postrema	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.59625
Germ cell cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.462
cytolytic	GeneRIF Biological Term Annotations	1.0	null
hdlm2	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.709
Lung adenocarcinoma_LUAD_TCGA-J2-A4AD-01A-11R-A24H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
report	GeneRIF Biological Term Annotations	1.0	null
frequent	GeneRIF Biological Term Annotations	1.0	null
A-2780 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.731
EGR4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	83.2465
GSE264010_0_v_1_parp1_human	RummaGEO Gene Perturbation Signatures	1.0	null
KLF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	79.591
promiscuous	GeneRIF Biological Term Annotations	1.0	null
Marrow cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.246
CTAG/Pcc1 family	InterPro Predicted Protein Domain Annotations	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-39-5021-01A-01R-1443-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
identification	GeneRIF Biological Term Annotations	1.0	null
polarization	GeneRIF Biological Term Annotations	1.0	null
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00724
Intrahepatic Cholangiocarcinoma	DisGeNET Gene-Disease Associations	1.0	null
alveolar soft part sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.907731
Arid3a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.4074
oral mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.329727
Oviduct	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.484
Sox11	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	29.7779
MDA-MB-330	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.50865
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-A45U-01A-12R-A24H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Hepatitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.681
cytoplasm	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Fin	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.393
noted	GeneRIF Biological Term Annotations	1.0	null
Cutaneous Melanoma	DisGeNET Gene-Disease Associations	1.0	null
Pancreatic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.215
Adult Liposarcoma	DisGeNET Gene-Disease Associations	1.0	null
valproic	GeneRIF Biological Term Annotations	1.0	null
globose nucleus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.52416
PMC7397849-supp_gad.338681.120_Supplemental_Table_S3.xlsx-S3N_Peaks_YAP1FAM118B_TEAD4-Unnamed_11_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
Integral component of organelle membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.817
Lung adenocarcinoma_LUAD_TCGA-55-1594-01A-01R-0946-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
TCF12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	59.5511
Follicular dendritic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.997
EBV-LCL cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.147
Thymic medulla	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.312
V	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.881126
Pleura	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.626
Te	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.594
Peripheral nerve sheath neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.466
Mononuclear cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.505
T-lymphoblastic leukemia cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.58
pericyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.230382
indicates	GeneRIF Biological Term Annotations	1.0	null
epidermal cell	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
MGE-Lateral region	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.64623
Localized osteosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.017
inner CP in temporal polar cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.58519
CTCF_MCF-7_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Thymic cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.912
EB1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.81518
NKX2-2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.8576
pattern	GeneRIF Biological Term Annotations	1.0	null
piriform cortex, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.48165
Bladder Urothelial Carcinoma_BLCA_TCGA-UY-A9PD-01A-11R-A38B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Advanced Synovial Sarcoma	DisGeNET Gene-Disease Associations	1.0	null
Miscarriage	DisGeNET Gene-Disease Associations	1.0	null
rare	GeneRIF Biological Term Annotations	1.0	null
ZNF143	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.9461
HS578T	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.02913
Chordoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.242
Chondrosarcoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.618
adjuvant	GeneRIF Biological Term Annotations	1.0	null
IZ in midlateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-2.35789
Thrombocytopenia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.521
one	GeneRIF Biological Term Annotations	1.0	null
4T1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.644
Cytotoxic T-lymphocyte cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.876
Hic1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	38.711
Glioblastoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.176
Tonsil	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.156
496100626_FWM_no dementia_TBI_86_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.19415
Liposarcoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.577
RPMI-8226 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.924
musculoskeletal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.548195
Skin Cutaneous Melanoma_SKCM_TCGA-FS-A1ZZ-06A-11R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MAX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.6557
Large B-cell lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.932
MZF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	69.4966
Ovarian cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.675
diagnosis	GeneRIF Biological Term Annotations	1.0	null
PK-59	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00724
Squamous Cell Carcinoma Of The Head And Neck	DisGeNET Gene-Disease Associations	1.0	null
PMC7397849-supp_gad.338681.120_Supplemental_Table_S3.xlsx-S3L_Peaks_2SA-YAP1_TEAD4-Unnamed_11_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
Benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.639
PMC11979751-table_s2_markers_elad055.xlsx-Melanoma_state_immune_markers-AP2_GTF3A	Rummagene Transcription Factor Associations 2026	1.0	null
parameters	GeneRIF Biological Term Annotations	1.0	null
Extracellular vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.096
Lung squamous cell carcinoma_LUSC_TCGA-94-A5I6-01A-21R-A27Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
who	GeneRIF Biological Term Annotations	1.0	null
PK-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.3761
Colorectum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.112
HCC2279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.20734
Rxra	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	71.3776
survival	GeneRIF Biological Term Annotations	1.0	null
ZIC1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	58.4492
Dmrt1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	24.3914
EGR3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	59.5499
Neurod2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	94.1941
preferentially	GeneRIF Biological Term Annotations	1.0	null
PMC8202205-NIHMS1706275-supplement-Table_S1.xlsx-Mesend_D2_GATA6-dependent-ENSEMBL_GATA6	Rummagene Transcription Factor Associations 2026	1.0	null
proteasomedependent	GeneRIF Biological Term Annotations	1.0	null
pd1	GeneRIF Biological Term Annotations	1.0	null
Intestinal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.414
lage1	GeneRIF Biological Term Annotations	1.0	null
Lymphatic system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.497
hsa-miR-4328	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
lateral tuberal nuclei	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	3.02125
TFAP2B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	211.791
hematopoietic system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.050927
specific	GeneRIF Biological Term Annotations	1.0	null
impact	GeneRIF Biological Term Annotations	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-FS-A1ZT-06A-11R-A18U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
chondrosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.513417
broad	GeneRIF Biological Term Annotations	1.0	null
hla	GeneRIF Biological Term Annotations	1.0	null
graft-versus-host disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.199
Myeloma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.923
Eye disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.68
RAJI cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.959
lung	GeneRIF Biological Term Annotations	1.0	null
Lung adenocarcinoma_LUAD_TCGA-67-3771-01A-01R-0946-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SP in dorsomedial frontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.02497
Mesothelioma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.222
CBX3_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Endometrial carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.17
esophageal	GeneRIF Biological Term Annotations	1.0	null
Adenocarcinoma	DisGeNET Gene-Disease Associations	1.0	null
developmental	GeneRIF Biological Term Annotations	1.0	null
TRAMP complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.381
Reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.712
Ovary cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.704
Peritoneum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.676
11861364-Table2a	GeneSigDB Published Gene Signatures	1.0	null
astrocytic	GeneRIF Biological Term Annotations	1.0	null
instrumental	GeneRIF Biological Term Annotations	1.0	null
Crus II, right, paravermis	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.928732
Cardiovascular system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.572
Pancreatic adenocarcinoma_PAAD_TCGA-IB-7885-01A-11R-2156-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PANC 02.03	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13219
SK-MEL-37 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.167
layer V of area 35c	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.912565
ZNF382	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.8055
Yy1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	23.8461
Malignant Testicular Germ Cell Tumor	DisGeNET Gene-Disease Associations	1.0	null
Memory T-lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.352
Hematologic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.724
Ovary adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.041
CTCF_GM12892_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Rhabdomyosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.901
lyse	GeneRIF Biological Term Annotations	1.0	null
metastasis	GeneRIF Biological Term Annotations	1.0	null
Peripheral blood mononuclear cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.576
Integumentary system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.194
Solid cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.345
Anus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.723
peptide	GeneRIF Biological Term Annotations	1.0	null
enhances	GeneRIF Biological Term Annotations	1.0	null
Female reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.638