association	dataset	threshold value	standardized value
GSE216043_7_v_8_cisplatin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
NCI-H1882	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.886609
GSE227592_10_v_1_adar_human	RummaGEO Gene Perturbation Signatures	-1.0	null
ZNF354A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	54.3577
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen	GO Molecular Function Annotations 2025	1.0	null
HNF4G	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.3388
ES8	COSMIC Cell Line Gene CNV Profiles	1.0	2.41451
preweaning lethality, complete penetrance	IMPC Knockout Mouse Phenotypes	1.0	null
NCI-H441	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03885
HCC2885	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.824626
CESS cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.273
Hfl	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.685
NCI-H322T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.13023
GSE222758_0_v_4_clofazimine_human	RummaGEO Drug Perturbation Signatures	1.0	null
C32	CCLE Cell Line Gene CNV Profiles	1.0	1.91252
Sex hormone levels	GWAS Catalog SNP-Phenotype Associations 2025	1.0	1.32218
IRF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	59.0038
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.41511
Liver	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.695
PMC7450273-mmc2.xlsx-ST18-Unnamed_3_ST18	Rummagene Transcription Factor Associations 2026	1.0	null
Carcinoma Of Lung	DisGeNET Gene-Disease Associations	1.0	null
CRCGN014_HEPG2_3H:O08	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.11762
Chorionic cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.103
POU3F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.342
PROX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.1384
CRCGN015_MCF10A_48H:J23	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.88612
HCC2279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.30992
Efflux pump complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.46
Biliary epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.234
CRCGN017_MCF10A.WT.HP_24H:A21	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.43652
GSE171177,GSE171181_1_v_0_e7107_human	RummaGEO Drug Perturbation Signatures	1.0	null
hESC cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.504
T98G	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03712
OPM2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.50281
GATA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.5631
SU-DHL-6	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.08596
preweaning lethality, complete penetrance	MGI Mouse Phenotype Associations 2023	1.0	null
Sjnkp	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.562
MSANTD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.26
OE33	COSMIC Cell Line Gene CNV Profiles	1.0	2.41451
FOSL1::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.4846
ZEB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.2272
Oxidation by Cytochrome P450(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
HS 683	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.08259
DNA replication factor C complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.851
OE33	CCLE Cell Line Gene CNV Profiles	1.0	1.87086
EPLC-272H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.37954
insulin-responsive compartment	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.136
HS 746T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.60365
GCIY	COSMIC Cell Line Gene CNV Profiles	1.0	2.41451
FEZF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	91.3434
JHOS2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.77682
GATA6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.9732
59M	CCLE Cell Line Gene CNV Profiles	-1.0	-1.6452
MAFK	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.105
CRCGN017_MCF10A.WT.HP_24H:I19	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.2526
IGR-37	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13683
OE21	CCLE Cell Line Gene CNV Profiles	1.0	2.61208
CAL29	CCLE Cell Line Gene CNV Profiles	1.0	1.91416
ZBTB7B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.9666
OPM-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.51289
PBX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	54.7141
RFX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.9293
Adrenal gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.722
OVCAR4	CCLE Cell Line Gene CNV Profiles	1.0	1.58204
OVOL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.454
GSE102870_3_v_9_nr1h4_human	RummaGEO Gene Perturbation Signatures	1.0	null
MDAMB453	CCLE Cell Line Gene CNV Profiles	-1.0	-2.06041
NCI-H1623	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.929614
TRPS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.6329
COLO 679	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09344
FOSL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.3862
TBX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.7083
FOXA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.1413
GSE171179,GSE171181_0_v_1_e7107_human	RummaGEO Drug Perturbation Signatures	1.0	null
Cytosolic aryl hydrocarbon receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.633
YY1	MotifMap Predicted Transcription Factor Targets	1.0	null
HCC1143	CCLE Cell Line Gene CNV Profiles	-1.0	-1.67038
ACH-3P cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.784
NFIC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.811
ZNF24	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	49.2681
KLF6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.3717
Hepatic artery	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.933
decreased mean platelet volume	IMPC Knockout Mouse Phenotypes	1.0	null
CRCGN015_MCF10A_48H:P13	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.49526
Activin A complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.939
G61	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.885911
CRCGN015_MCF10A_48H:H24	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.04815
GSE158182_3_v_0_pnpla3_human	RummaGEO Gene Perturbation Signatures	-1.0	null
PA-TU-8988T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28804
BEN cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.721
CRCGN009_HEPG2_24H:H24	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.82375
PKNOX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.4792
GSE148657_2_v_1_cd44_human	RummaGEO Gene Perturbation Signatures	1.0	null
SHOX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.208
OPM1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.53157
ME-180	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00392
Collagen network	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.608
Visceral endoderm	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.617
V-79 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.934
Syncytiotrophoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.138
ae2	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.8
Htk	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.643
Adrenal cortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.028
Smooth endoplasmic reticulum	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.866
PMC11196699-41598_2024_61762_MOESM1_ESM.xls-Normal_v_Advanced-PRDM16_PRDM16	Rummagene Transcription Factor Associations 2026	1.0	null
dr9	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.732
PITX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.8878
CRCGN017_MCF10A.WT.HP_24H:E07	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.0971
Myelomonocytic leukemia cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.66
PMC7021771-41467_2020_14684_MOESM7_ESM.xlsx-CASZ1_ChIPseq_in_SMS-CTR_MEKi-Nearest_Ensembl_CASZ1	Rummagene Transcription Factor Associations 2026	1.0	null
JL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.989341
GSE185744,GSE185747_2_v_3_sox9_human	RummaGEO Gene Perturbation Signatures	1.0	null
ZNF143	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.7704
HS 69ST	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.46157
thrombocytopenia	IMPC Knockout Mouse Phenotypes	1.0	null
POU4F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.0421
SK-MEL-31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13507
Endoplasmic reticulum subcompartment	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
DOHH-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.985743
NKX2-3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.0544
retinoid metabolic process	GO Biological Process Annotations 2025	1.0	null
Adrenocortical carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.669
HCC2279	CCLE Cell Line Gene CNV Profiles	-1.0	-1.98513
Liver cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.861
THRB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	77.5975
LAMA84	CCLE Cell Line Gene CNV Profiles	-1.0	-1.37324
PMC6824333-peerj-07-7975-s009.txt--HNF4A_HNF4A	Rummagene Transcription Factor Associations 2026	1.0	null
Estradiol levels	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.9
NFIX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.572
KMS-12-BM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.922043
GSE216043_11_v_1_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
SNU626	CCLE Cell Line Gene CNV Profiles	1.0	1.33082
GSE102870_5_v_0_nr1h4_human	RummaGEO Gene Perturbation Signatures	1.0	null
Villous cytotrophoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.639
MLMA	COSMIC Cell Line Gene CNV Profiles	1.0	2.41451
NCI-H596	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28738
laminin-1 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.698
GSE202434,GSE202438_4_v_0_talazoparib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
EBC1	CCLE Cell Line Gene CNV Profiles	1.0	2.12885
MYC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	47.8604
WRL-68 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.884
oxidative demethylation	GO Biological Process Annotations 2025	1.0	null
NFATC3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.126
CRCGN017_MCF10A.WT.HP_24H:N23	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.13285
RC-K8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.878087
CRCGN015_MCF10A_48H:C19	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.29885
G96	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.34073
MAX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.4423
OV-90	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.37734
HEYA8	CCLE Cell Line Gene CNV Profiles	-1.0	-1.62332
FOSL2::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	49.1924
ZNF708	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	66.9493
G111	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.34136
CRCGN015_MCF10A_48H:C24	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.74739
GSE160817_4_v_1_slamf6_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Median body	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.584
SNAI2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.6774
GSE166920_6_v_1_adalimumab_human	RummaGEO Drug Perturbation Signatures	1.0	null
LS-180 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.277
NCI-H810	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.40056
STAT1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.105
Embryoid body	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.102
GATA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.0899
ONECUT1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.1776
ZNF214	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.4523
GSE210101,GSE210114_6_v_9_urod_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE89057_0_v_1_sox5_human	RummaGEO Gene Perturbation Signatures	1.0	null
FOXO6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.4723
Germ cell cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.098
PMC5584748__F3	PFOCR Pathway Figure Associations 2024	1.0	null
ZNF136	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	47.8853
RXRG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	66.235
PMC10015223-can-22-1444_supplementary_data_2_suppsd2.xlsx-K2-ATF3_peaks_Context1_2-Nearest_Ensembl_ATF3	Rummagene Transcription Factor Associations 2026	1.0	null
PLC/PRF/5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35211
KLF13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.6686
COLO 680N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04808
CRCGN015_MCF10A_48H:C20	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.25646
GSE217776,GSE217829_4_v_6_sgf29_human	RummaGEO Gene Perturbation Signatures	-1.0	null
HNF4A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.7224
Cytochrome P450, conserved site	InterPro Predicted Protein Domain Annotations	1.0	null
CRCGN017_MCF10A.WT.HP_24H:O10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.12455
Hepatoblastoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.073
NCI-H2052	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.13519
Hepatoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.026
Nuclear outer membrane-endoplasmic reticulum membrane network	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
ZNF282	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.0796
Rce	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.544
NFATC4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	68.4425
GSE243879_1_v_0_elapor1_human	RummaGEO Gene Perturbation Signatures	1.0	null
CRCGN012_HEPG2_24H:K01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.91723
HCC1576	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.885911
Hippocampus minor	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.818
GSE128634,GSE128636_1_v_5_foxo1_human	RummaGEO Gene Perturbation Signatures	1.0	null
SU-DHL-10	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.989341
Male pronucleus	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.63
MEIS3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.5069
NCIH2228	CCLE Cell Line Gene CNV Profiles	-1.0	-1.7408
Acute Coronary Syndrome	DisGeNET Gene-Disease Associations	1.0	null
Neonate	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.232
KLE cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.609
GSE216043_11_v_5_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
MYF6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.7315
PMC10015223-can-22-1444_supplementary_data_2_suppsd2.xlsx-RT4-FOXA1_peaks_Context1_2-Nearest_Ensembl_FOXA1	Rummagene Transcription Factor Associations 2026	1.0	null
EVSAT	CCLE Cell Line Gene CNV Profiles	1.0	1.69239
CEBPG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.9359
Adult liver stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.766
Endometrial cancer	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.652288
FOXS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.7433
786-O	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.922043
OVCAR-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.843017
KMS-34	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13507
POU3F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.713
GSE111247_14_v_4_temozolomide_human	RummaGEO Drug Perturbation Signatures	1.0	null
928 MEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.828718
alpha3-beta1 integrin-thrombospondin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.388
ASCL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	77.8888
GSE127261_1_v_2_ezh2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
SC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.878087
GSE127916_1_v_2_nras_human	RummaGEO Gene Perturbation Signatures	1.0	null
Chl	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.966
Small intestine mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.555
Zona glomerulosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.588
CRCGN014_HEPG2_3H:E07	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.33107
CRCGN015_HEPG2_48H:B17	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.0031
CRCGN015_MCF10A.WT.HP_24H:B10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.60956
Metapathway biotransformation(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
RARB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	47.9169
CRCGN015_HEPG2_48H:G02	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.13517
GSE234637_3_v_0_cytarabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
Cholangiocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.933
CAL-148	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.879779
Portal vein	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.246
Ciliary pocket collar	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.621
PK-45P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.938895
GSE109140_2_v_1_valproic acid_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Liver reticuloendothelial system	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.342
KELLY	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.989341
FOSL1::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.824
HIC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.6938
MEIS2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	62.4413
STAT1::STAT2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	93.7871
Organelle subcompartment	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
RFX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.2783
SOX14	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.0268
HCC461	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04808
Cdc42 GTPase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.67
CRCGN008_HEPG2_24H:L16	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.1298
JHESOAD1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33414
GSE226249_0_v_7_pirfenidone_human	RummaGEO Drug Perturbation Signatures	-1.0	null
REST	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	63.2334
CRCGN015_MCF10A_48H:O11	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	7.26905
RFX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	52.1469
RFX5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.9005
RHOXF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.1333
TE6	CCLE Cell Line Gene CNV Profiles	1.0	1.46621
OVSAHO cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.808
CRCGN015_MCF10A_48H:C22	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.22354
GSE221327_5_v_2_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
I-cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.58
GSE242199_9_v_5_ntrk2_human	RummaGEO Gene Perturbation Signatures	1.0	null
BCL11A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.6019
Urinary metabolite levels in chronic kidney disease	GWAS Catalog SNP-Phenotype Associations 2025	1.0	1.13979
CRCGN015_MCF10A_48H:G01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.8408
CRCGN015_MCF10A_48H:P04	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.7858
GSE118816_0_v_3_myo1c_human	RummaGEO Gene Perturbation Signatures	1.0	null
Parenchymal cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.437
FOSB::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.8255
T-47D	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.13588
GSE160817_0_v_1_slamf6_human	RummaGEO Gene Perturbation Signatures	-1.0	null
NCI-H716	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03712
TCF12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.7141
nfe2l2_22586274_liver_lof_mouse_gpl4134_gse35124	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	1.0	0.184084
GSE171180,GSE171181_0_v_1_e7107_human	RummaGEO Drug Perturbation Signatures	1.0	null
CA46	CCLE Cell Line Gene CNV Profiles	1.0	1.41346
hPSC cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.817
FOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.3327
NKX2-2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	47.8669
SOX9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.2368
CRCGN015_MCF10A_48H:J16	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	7.48915
GSE158182_4_v_0_pnpla3_human	RummaGEO Gene Perturbation Signatures	-1.0	null
ZNF582	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	61.529
no abnormal phenotype detected	MGI Mouse Phenotype Associations 2023	1.0	null
GSE109565_12_v_11_glyphosate_human	RummaGEO Drug Perturbation Signatures	-1.0	null
V-79-4 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.596
ERF::NHLH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	55.2535
CRCGN017_MCF10A.WT.HP_24H:C02	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.00331
CRCGN015_HEPG2_48H:B16	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.70428
Cervical mucus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.578
EB-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.985743
CRCGN015_MCF10A_48H:G14	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.07395
HCC1143	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.63465
MX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.929642
GATA4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.4431
ISL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.8625
NR1I2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.9156
PHH	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.581
NFYC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.8559
NAMALWA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.985743
NKX2-5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	50.0077
RUNX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	62.2055
CA46	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.11888
MXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.5169
POU5F1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.7032
ZNF135	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	78.8281
MAFA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.717
Amnion epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.811
GSE158182_4_v_7_pnpla3_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE214931_1_v_0_temozolomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE216757_0_v_1_decitabine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE171175,GSE171181_1_v_2_e7107_human	RummaGEO Drug Perturbation Signatures	1.0	null
TBR1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.4108
B-lymphoblastoid cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.769
ZNF75D	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.9186
FOXK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.2708
NADP+	MW Enzyme Metabolite Associations	1.0	null
laminin-10 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.658
GSE139455_0_v_6_stat3_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Hepatocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.45
RARG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	47.842
CRCGN008_HEPG2_24H:L13	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.39055
POU6F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.5324
Primary Malignant Neoplasm Of Lung	DisGeNET Gene-Disease Associations	1.0	null
OUMS-23	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09171
KMRC20	CCLE Cell Line Gene CNV Profiles	1.0	1.35335
MEIS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	73.0074
JMSU1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.39307
NCIH1339	CCLE Cell Line Gene CNV Profiles	-1.0	-1.55179
GSE235390_4_v_0_lurbinectedin_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE217452_3_v_1_docetaxel_human	RummaGEO Drug Perturbation Signatures	1.0	null
BCPAP	CCLE Cell Line Gene CNV Profiles	-1.0	-1.42293
OVMANA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.845043
HOXD12::ELK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.7428
BICR16	CCLE Cell Line Gene CNV Profiles	1.0	1.36991
dexamethasone_homo sapiens_gpl4133_gse42619	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
GLIS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.2467
Retinol metabolism	KEGG Pathways 2026	1.0	null
GSE102870_11_v_9_nr1h4_human	RummaGEO Gene Perturbation Signatures	1.0	null
FOXO4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.339
OVOL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.9766
RMGI	CCLE Cell Line Gene CNV Profiles	-1.0	-1.90508
Choriocarcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.84
ZNF574	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.23
GSE121824,GSE121826_0_v_3_scaf8_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Villous syncytiotrophoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.764
CRCGN012_HEPG2_24H:H24	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.47845
CRCGN015_MCF10A_48H:M07	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	6.76199
Zona reticulata	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.915
FOSL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	49.6766
Ost-alpha/Ost-beta complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.53
NCI-H209	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.93259
TBX20	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.743
CRCGN008_HEPG2_24H:L14	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.58215
GSE121319_1_v_2_gprc5a_human	RummaGEO Gene Perturbation Signatures	-1.0	null
LUDLU1	CCLE Cell Line Gene CNV Profiles	1.0	1.42289
FOS::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.8267
retinoic acid metabolic process	GO Biological Process Annotations 2025	1.0	null
RBPJ	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.679
RXRB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	84.6066
GABPA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.4908
GSE128634,GSE128636_2_v_5_foxo1_human	RummaGEO Gene Perturbation Signatures	1.0	null
JIMT-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.929642
Cytochrome P450, E-class, group II	InterPro Predicted Protein Domain Annotations	1.0	null
Hepatic stellate cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.608
Gut wall	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.006
serotonin-activated cation-selective channel complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.686
GSE200982_0_v_2_plac8_human	RummaGEO Gene Perturbation Signatures	-1.0	null
NCI-H889	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.929614
Hep-G2/C3A cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.845
GSE233679_6_v_0_nicotinamide_human	RummaGEO Drug Perturbation Signatures	1.0	null
CRCGN017_MCF10A.WT.HP_24H:M20	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.1031
GSE220097_4_v_1_enzalutamide_human	RummaGEO Drug Perturbation Signatures	1.0	null
Amnion epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.833
PKNOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.7497
D283MED	CCLE Cell Line Gene CNV Profiles	-1.0	-1.99839
Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	GWAS Catalog SNP-Phenotype Associations 2025	1.0	1.0
FIGLA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.8446
SK-CO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.67032
GSE109140_2_v_3_valproic acid_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE171175,GSE171181_1_v_0_e7107_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE216274,GSE216292_4_v_3_palbociclib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
estrogen metabolic process	GO Biological Process Annotations 2025	1.0	null
CAL-12T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.844345
GSE221327_8_v_2_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
NFIL3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.0711
GCIY	CCLE Cell Line Gene CNV Profiles	1.0	1.36269
CRCGN015_MCF10A.WT.HP_24H:M16	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	6.5204
HCC4017	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.828718
GT1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.558
NFKB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.454
BARX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.4223
NEUROD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.422
GSE221327_1_v_2_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE149901_3_v_0_anlotinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
Hepatoma HLE cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.154
Gastric juice	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.544
TK-6 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.071
JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.8077
Zona fasciculata	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.582
Human amniotic epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.83
CRCGN013_HEPG2_24H:C19	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.41451
KP-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.13519
WA-09 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.039
GSE216043_7_v_9_cisplatin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
SRF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.5556
C32	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.71758
MDA-MB-453	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06863
Hepa-RG cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.163
vs86	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.618
CRCGN011_HEPG2_24H:O05	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.95655
JEG-3 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.706
FNIP-folliculin RagC/D GAP	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.766
SNU-5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.82707
KU812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.885911
CRCGN013_HEPG2_24H:L21	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.28869
SK-MES-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.13588
PMC10015223-can-22-1444_supplementary_data_2_suppsd2.xlsx-RT4-FOXA1_peaks_Context1_2-Gene_Name_FOXA1	Rummagene Transcription Factor Associations 2026	1.0	null
Bile duct epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.91
GSE227592_6_v_1_adar_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Kupffer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.261
POU3F4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.5887
EBC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.76797
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.828718
SNU-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Mutation Profiles	1.0	null
Bile duct	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.883
GSE228261_0_v_1_elesclomol_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE158182_5_v_0_pnpla3_human	RummaGEO Gene Perturbation Signatures	-1.0	null
TGIF2LX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.3859
ZNF652	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	50.1867
estrogen 2-hydroxylase activity	GO Molecular Function Annotations 2025	1.0	null
CAPAN-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11734
GSE202434,GSE202438_7_v_14_talazoparib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
FOS::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	47.4574
THRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	47.8736
CRCGN017_MCF10A.WT.HP_24H:E04	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.72618
Mesendoderm	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.11
NR4A1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.0601
Psp	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.727
HEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.972775
496100426_PCx_no dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.00315
FOXP4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.4027
Heparanase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.743
FOSL2::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	50.3219
FOSL2::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	50.0276
SREBF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	52.9787
monocarboxylic acid metabolic process	GO Biological Process Annotations 2025	1.0	null
SOX15	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.8218
POU3F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.8504
ZNF684	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.2183
PBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.7494
OVISE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.24549
PE/CA-PJ15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.88264
ZNF341	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.283
serine-pyruvate aminotransferase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.841
T98G	CCLE Cell Line Gene CNV Profiles	1.0	1.63189
Activin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.896
POU2F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.0841
CRCGN015_MCF10A_48H:L06	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.13497
estrogen 16-alpha-hydroxylase activity	GO Molecular Function Annotations 2025	1.0	null
CRCGN015_MCF10A.TP53.M_24H:K11	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.09828
GSE210101,GSE210114_4_v_3_urod_human	RummaGEO Gene Perturbation Signatures	1.0	null
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
FOXH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.8916
MDA-MB-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00392
GSE216274,GSE216292_4_v_1_palbociclib_human	RummaGEO Drug Perturbation Signatures	1.0	null
CRCGN012_HEPG2_24H:O06	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.3913
CRCGN014_HEPG2_3H:H15	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.5754
PMC5444746-oncotarget-08-30328-s002.xlsx-SI01_ChIPSeq_H3K9me_AR-Gene_Symbol_AR	Rummagene Transcription Factor Associations 2026	1.0	null
GSE158182_3_v_7_pnpla3_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Gamma DNA polymerase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.621
NKX2-4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.4466
MYCN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.8027
Offspring birth weight	GWAS Catalog SNP-Phenotype Associations 2025	1.0	1.6699
GSE128634,GSE128636_2_v_0_foxo1_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE202434,GSE202438_8_v_14_talazoparib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
ZNF189	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	62.6419
TGIF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.6713
POU4F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.3887
CRCGN015_MCF10A_48H:P19	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.3989
CRCGN017_MCF10A.WT.HP_24H:M01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.02922
POU5F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.3148
TCF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.4703
ZBTB7A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.4374
GSE238116_1_v_2_egr1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
SNAI3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.2724
HCC1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.55115
PITX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.9693
Dehydroepiandrosterone	MW Enzyme Metabolite Associations	1.0	null
NMS complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.818
PMC10927592-pnas.2308255121.sd07.xlsx-F180_top_NRF-hsa_orth_NKRF	Rummagene Transcription Factor Associations 2026	1.0	null
NFE2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.4202
NCI-H1770	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.40056
G44	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.3011
GSE102870_1_v_0_nr1h4_human	RummaGEO Gene Perturbation Signatures	1.0	null
DPRX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8971
SK-OV-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.77808
NUGC-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.824626
Chemical carcinogenesis - DNA adducts	KEGG Pathways 2026	1.0	null
ZBTB32	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.3392
CALU-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.13519
GSE217776,GSE217829_2_v_6_sgf29_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE233679_12_v_7_nicotinamide_human	RummaGEO Drug Perturbation Signatures	1.0	null
HOXD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.5503
HCC2688	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04737
SNU5	CCLE Cell Line Gene CNV Profiles	1.0	1.99138
H322T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.13023
acetylcholine-gated channel complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.576
hiPSC cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.596
Endoplasmic reticulum	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
TK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.34073
MGA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.858
RMG-I	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.03321
JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.4369
CRCGN016_MCF10A.WT.HP_24H:P10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.87769
RAMOS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.985743
ARGFX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.8626
OACP4C	COSMIC Cell Line Gene CNV Profiles	1.0	2.41451
TGIF2LY	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.9441
NOTO	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.1277
Hucfm	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.882
LHX9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.0389
CAPAN-1	COSMIC Cell Line Gene CNV Profiles	1.0	2.41451
GSE109140_0_v_1_valproic acid_human	RummaGEO Drug Perturbation Signatures	-1.0	null
BeWo cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.191
IM-95	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.985743
OSR1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.7278
PRDM1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.9787
PMC7021771-41467_2020_14684_MOESM7_ESM.xlsx-CASZ1_ChIPseq_in_SMS-CTR_MEKi-Gene_Name_CASZ1	Rummagene Transcription Factor Associations 2026	1.0	null
OV56	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.845717
steroid hydroxylase activity	GO Molecular Function Annotations 2025	1.0	null
GET complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.188
59M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.51594
lipid metabolic process	GO Biological Process Annotations 2025	1.0	null
SCC4	CCLE Cell Line Gene CNV Profiles	1.0	2.36852
GSE216757_4_v_1_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
MYOD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.159
SNU213	CCLE Cell Line Gene CNV Profiles	1.0	2.94373
GSE216043_3_v_1_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
HOXB6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.2439
KYSE-270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28804
CRCGN014_HEPG2_24H:L16	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.33696
Digestive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.663
GSE157036,GSE166411_3_v_1_halofuginone_human	RummaGEO Drug Perturbation Signatures	1.0	null
ZBTB12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.6272
PA-TU-8902	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.824626
TP53	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	55.7121
Pod	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.685
ZNF382	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	68.0202
HCC2270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03885
retinoic acid 4-hydroxylase activity	GO Molecular Function Annotations 2025	1.0	null
NCI-H1993	COSMIC Cell Line Gene CNV Profiles	1.0	2.41451
VSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.6632
TBX18	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.5259
Ornithine carbamoyltransferase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.14
DMRT3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.9801
Complex of collagen trimers	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.585
BATF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.8863
POU2F1::SOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.9745
Serum metabolite levels	GWAS Catalog SNP-Phenotype Associations 2025	1.0	4.83979
PMC10015223-can-22-1444_supplementary_data_2_suppsd2.xlsx-K2-ATF3_peaks_Context1_2-Gene_Name_ATF3	Rummagene Transcription Factor Associations 2026	1.0	null
Amniotic fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.114
RMUGS	CCLE Cell Line Gene CNV Profiles	-1.0	-1.52506
REL	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.0588
TGIF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.3459
PPARA::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.4932
hTERT-HSC cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.724
BACH2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.2383
OSR2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.9462
Cytochrome P450	InterPro Predicted Protein Domain Annotations	1.0	null
HEY	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.915787
Apical plasma membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.979
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.59128
GSE194396,GSE194429_2_v_0_atrx_human	RummaGEO Gene Perturbation Signatures	1.0	null
PMC5444746-oncotarget-08-30328-s002.xlsx-SI02_Gene_symbols-1912_ChIP-Seq_H3K9me1_2_demethylation_and_ChIP-Seq_AR_AR	Rummagene Transcription Factor Associations 2026	1.0	null
Meconium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.21
GSE182179_2_v_3_kdsr_human	RummaGEO Gene Perturbation Signatures	-1.0	null
testosterone 6-beta-hydroxylase activity	GO Molecular Function Annotations 2025	1.0	null
HESX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.7604
KG1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.26006
496100546_TCx_no dementia_no TBI_78_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.15756
SKCO1	CCLE Cell Line Gene CNV Profiles	1.0	1.7523
CRCGN014_HEPG2_24H:H02	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.25225
EFM-19	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04737
MAF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.618
HLF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.7536
PBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	54.4444
GFI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.0969
Cytochrome P450, E-class, CYP3A	InterPro Predicted Protein Domain Annotations	1.0	null
Placental membrane	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.256
c87	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.637
NR6A1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	65.1264
BCL6B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.5249
Juice	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.089
SATB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.2455
ZSCAN31	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.114
MKN7	CCLE Cell Line Gene CNV Profiles	-1.0	-1.451
PPARG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.3929
GSE216043_3_v_5_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
Umbilical vein	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.994
FOSL1::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.8212
Retinoic acid	MW Enzyme Metabolite Associations	1.0	null
NCI-SNU-5	COSMIC Cell Line Gene CNV Profiles	1.0	2.41451
SREBP-SCAP-Insig complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.636
KMS-34	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Mutation Profiles	1.0	null
lipid modification	GO Biological Process Annotations 2025	1.0	null
PRRX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.0158
NCIH322	CCLE Cell Line Gene CNV Profiles	-1.0	-2.39329
BATF::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.551
nicotine_myzus persicae_gpl9470_gse18658	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
SUM 52PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.1229
CRCGN015_MCF10A.TP53.M_24H:C24	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.4092
GTPase activator complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.674
EPLC272H	CCLE Cell Line Gene CNV Profiles	1.0	2.04307
Endoderm	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.917
HOXD12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.8543
HME cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.746
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.824626
PROP1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.9968
POU2F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.1718
GSE143782_3_v_11_calcitriol_human	RummaGEO Drug Perturbation Signatures	1.0	null
NFYA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.3111
GSE242333_0_v_3_sorafenib_human	RummaGEO Drug Perturbation Signatures	1.0	null
MYF5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.0978
UKE-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.86292
Choriocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.104
FOS	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.533
KO52	CCLE Cell Line Gene CNV Profiles	-1.0	-2.22486
GSE173201_2_v_1_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
Intracellular canaliculus	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.147
PHOX2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.5333
NCI-H2228	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.6741
GSE233548_2_v_0_plscr1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
JDP2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.18
MG63	CCLE Cell Line Gene CNV Profiles	-1.0	-1.32875
ELK1::HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.2848
endoplasmic reticulum membrane	GO Cellular Component Annotations 2025	1.0	null
CRCGN011_HEPG2_24H:L03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.5153
Breast Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
GSE235701,GSE261434_0_v_3_enasidenib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Citrullinemia	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.965
CRCGN015_MCF10A_48H:M16	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	7.32342
CRCGN014_HEPG2_3H:B08	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.5946
Malignant Neoplasm	DisGeNET Gene-Disease Associations	1.0	null
Adult	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.388
GSE210476_9_v_8_rutaecarpine_human	RummaGEO Drug Perturbation Signatures	1.0	null
steroid metabolic process	GO Biological Process Annotations 2025	1.0	null
PPARD	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.2006
PECAPJ15	CCLE Cell Line Gene CNV Profiles	1.0	1.57868
ONECUT3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	68.9671
NRL	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.5052
OVCA 432	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.13588
GSE70935_2_v_4_cyfip1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
PMC9950457-mmc3.xlsx-GRHL2_binding_sites-RBBP8NL_GRHL2	Rummagene Transcription Factor Associations 2026	1.0	null
CRCGN010_HEPG2_24H:O03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.30903
EVSA-T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.76797
UACC-812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04808
SKOV3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.70411
GSE121319_1_v_0_gprc5a_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE146687_2_v_3_eribulin_human	RummaGEO Drug Perturbation Signatures	1.0	null
BNC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.7911
OLIG3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.2767
Hep-G2 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.028
STAT3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.5657
Placenta	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.969
GSE227592_8_v_1_adar_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE158182_5_v_7_pnpla3_human	RummaGEO Gene Perturbation Signatures	-1.0	null
TE-6	COSMIC Cell Line Gene CNV Profiles	1.0	2.41451
LU99	CCLE Cell Line Gene CNV Profiles	-1.0	-2.87687
NCI-H510A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09171
FOS::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.1411
GSE160817_3_v_1_slamf6_human	RummaGEO Gene Perturbation Signatures	-1.0	null
SNU466	CCLE Cell Line Gene CNV Profiles	1.0	1.565
GSE161170,GSE161268_1_v_3_med1_human	RummaGEO Gene Perturbation Signatures	1.0	null
ZNF410	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.6791
CRCGN008_HEPG2_24H:I13	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.2529
CRCGN015_HEPG2_48H:K10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.21097
GSE81796_0_v_1_enzalutamide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
EOMES	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.0086
Liver bud	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.965
GSE227592_13_v_1_adar_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Sto	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.569
Steroid hormone biosynthesis	KEGG Pathways 2026	1.0	null
Liver sinusoidal endothelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.123
ZNF354C	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.125
COV644	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.22373
Wing bud	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.698
CREB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.888
CRCGN015_MCF10A_48H:G05	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.8235
Endoplasmic reticulum membrane	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
Biliary epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.907
Aryl hydrocarbon receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.328
NR4A2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.2363
CAPAN1	CCLE Cell Line Gene CNV Profiles	1.0	1.40277
Heel bone mineral density	GWAS Catalog SNP-Phenotype Associations 2025	1.0	1.9699
BATF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.38
FOXP2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.906
lipid hydroxylation	GO Biological Process Annotations 2025	1.0	null
Foregut	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.319
POU2F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	55.3701
HS746T	CCLE Cell Line Gene CNV Profiles	1.0	1.54156
MT-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.878087
ZNF184	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.4238
Adipose - Visceral (Omentum)	GTEx Tissue Gene Expression Profiles 2023	1.0	7.21239
Bile canaliculus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.73
TBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.8455
WM-115	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.08259
GSE233679_6_v_7_nicotinamide_human	RummaGEO Drug Perturbation Signatures	1.0	null
ZNF35	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.879
PMC12606276-41698_2025_1121_MOESM1_ESM.pdf-21-CTCFL_CTCFL	Rummagene Transcription Factor Associations 2026	1.0	null