association	dataset	threshold value	standardized value
lytic vacuole	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
second	GeneRIF Biological Term Annotations	1.0	null
RUNX2	JASPAR Predicted Transcription Factor Targets	1.0	null
PBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.5556
inhibitors	GeneRIF Biological Term Annotations	1.0	null
CJM	CCLE Cell Line Gene CNV Profiles	1.0	1.9876
Ovarian follicular epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.099
Neoplasms	CTD Gene-Disease Associations	1.0	1.05126
novo	GeneRIF Biological Term Annotations	1.0	null
GSE76425_0_v_10_lenalidomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Osteogenesis imperfecta type 6	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.369
pathways	GeneRIF Biological Term Annotations	1.0	null
NCI-H1781	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.17752
HSPD1	Hub Proteins Protein-Protein Interactions	1.0	null
Urinary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.391
Intestinal epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.7
tumors	GeneRIF Biological Term Annotations	1.0	null
women	GeneRIF Biological Term Annotations	1.0	null
Reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.06
c1q	GeneRIF Biological Term Annotations	1.0	null
formation	GeneRIF Biological Term Annotations	1.0	null
Intracellular vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
granulocytes	GeneRIF Biological Term Annotations	1.0	null
J82	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.99615
ad1	GeneRIF Biological Term Annotations	1.0	null
immune system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042036
extraorganismal space	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.327581
f96	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.681
total	GeneRIF Biological Term Annotations	1.0	null
brain	HPA Tissue Gene Expression Profiles	-1.0	-1.10599
ERF::HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.2509
DYNLL1	Pathway Commons Protein-Protein Interactions	1.0	null
Cardiovascular system disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.547
expressional	GeneRIF Biological Term Annotations	1.0	null
endothelial	GeneRIF Biological Term Annotations	1.0	null
Leg Ulcer	DisGeNET Gene-Disease Associations	1.0	null
factorbeta	GeneRIF Biological Term Annotations	1.0	null
cell	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
intracellular membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
intracellularly	GeneRIF Biological Term Annotations	1.0	null
hiv1	GeneRIF Biological Term Annotations	1.0	null
PPARA::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.685
potently	GeneRIF Biological Term Annotations	1.0	null
CTTNBP2NL	Pathway Commons Protein-Protein Interactions	1.0	null
Myeloid Leukemia	DisGeNET Gene-Disease Associations	1.0	null
antibacterial humoral response	GO Biological Process Annotations 2023	1.0	null
iv95	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.491
eef2	GeneRIF Biological Term Annotations	1.0	null
Periodontitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.548
contributes	GeneRIF Biological Term Annotations	1.0	null
distributions	GeneRIF Biological Term Annotations	1.0	null
azurophil granule	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
killing by host of symbiont cells	GO Biological Process Annotations 2023	1.0	null
bridge	GeneRIF Biological Term Annotations	1.0	null
ZNF16	Pathway Commons Protein-Protein Interactions	1.0	null
Cecum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.387
transforming	GeneRIF Biological Term Annotations	1.0	null
SNU349	CCLE Cell Line Gene CNV Profiles	1.0	2.43191
except	GeneRIF Biological Term Annotations	1.0	null
Vacuole	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
Sublingual gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.969
Defensins	Reactome Pathways 2014	1.0	null
RARA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	70.6243
GSE182181_1_v_0_ricolinostat_human	RummaGEO Drug Perturbation Signatures	-1.0	null
JHH-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.85431
DYNLL1	Hub Proteins Protein-Protein Interactions	1.0	null
Liver disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.14
FOXP1-21924763-HESCS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
endocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053095
SPI1	ENCODE Transcription Factor Targets	1.0	null
defa13	GeneRIF Biological Term Annotations	1.0	null
adp	GeneRIF Biological Term Annotations	1.0	null
mRNA_MYC_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	-1.0	null
crevicular	GeneRIF Biological Term Annotations	1.0	null
YWHAZ	Pathway Commons Protein-Protein Interactions	1.0	null
PPP2CB	Pathway Commons Protein-Protein Interactions	1.0	null
prerequisite	GeneRIF Biological Term Annotations	1.0	null
PBX1-22567123-OVCAR3-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Periodontium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.201
defense response to Gram-positive bacterium	GO Biological Process Annotations 2023	1.0	null
TCF7L1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.5814
STRN4	Pathway Commons Protein-Protein Interactions	1.0	null
IgA glomerulonephritis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.342
RXRB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.2186
promoted	GeneRIF Biological Term Annotations	1.0	null
BICR 31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.857372
PMC11906621-41598_2025_93656_MOESM6_ESM.pdf-29-IRF7_IRF7	Rummagene Transcription Factor Associations 2026	1.0	null
betastrands	GeneRIF Biological Term Annotations	1.0	null
PMC8567035-CTM2-11-e578-s001.xlsx-transcription_misregulation-RUNX1_RUNX1	Rummagene Transcription Factor Associations 2026	1.0	null
mRNA_SOX9_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	-1.0	null
Periodontal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.54
Columnar cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.838
genotyped	GeneRIF Biological Term Annotations	1.0	null
endocrine gland	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
gastrointestinal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042178
animal	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	1.53602
overlapped	GeneRIF Biological Term Annotations	1.0	null
Secretory granule	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
coli	GeneRIF Biological Term Annotations	1.0	null
Intestinal gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.965
pancreas	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Golgi lumen	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.658
NR1H2::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.04
Diabetes mellitus	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.574
CBX3	Pathway Commons Protein-Protein Interactions	1.0	null
15709204-Table1	GeneSigDB Published Gene Signatures	1.0	null
Extracellular region	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
HIST1H2BH	Pathway Commons Protein-Protein Interactions	1.0	null
salivarygland	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	0.99215
defa1defa3	GeneRIF Biological Term Annotations	1.0	null
classical	GeneRIF Biological Term Annotations	1.0	null
mediating	GeneRIF Biological Term Annotations	1.0	null
alphadefensins13	GeneRIF Biological Term Annotations	1.0	null
less	GeneRIF Biological Term Annotations	1.0	null
Genetic Predisposition to Disease	HuGE Navigator Gene-Phenotype Associations	1.0	null
premature	GeneRIF Biological Term Annotations	1.0	null
Disease of metabolism	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.641
provide	GeneRIF Biological Term Annotations	1.0	null
HMMR	Pathway Commons Protein-Protein Interactions	1.0	null
azurophil granule	GO Cellular Component Annotations 2023	1.0	null
mouth disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.460883
preoptic	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-1.26943
one	GeneRIF Biological Term Annotations	1.0	null
Mixed Salivary Gland Tumor	DisGeNET Gene-Disease Associations	1.0	null
ESRRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.2909
downstream	GeneRIF Biological Term Annotations	1.0	null
Atherosclerosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.167
Systemic lupus erythematosus	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.332
Vesicle lumen	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
secretory granule lumen	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
animal	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
angles	GeneRIF Biological Term Annotations	1.0	null
change	GeneRIF Biological Term Annotations	1.0	null
LTF	Pathway Commons Protein-Protein Interactions	1.0	null
Heart ventricle	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.089
blood	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	1.53602
changes	GeneRIF Biological Term Annotations	1.0	null
responsible	GeneRIF Biological Term Annotations	1.0	null
protected	GeneRIF Biological Term Annotations	1.0	null
Embryo Loss	CTD Gene-Disease Associations	1.0	1.25369
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
496100661_PCx_no dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.11567
Vascular disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.547
secrete	GeneRIF Biological Term Annotations	1.0	null
cd91	GeneRIF Biological Term Annotations	1.0	null
Amniotic cavity	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.608
Diabetes	DisGeNET Gene-Disease Associations	1.0	null
myelomonocytic	GeneRIF Biological Term Annotations	1.0	null
promoter	GeneRIF Biological Term Annotations	1.0	null
Basophil percentage of white cells	GWAS Catalog SNP-Phenotype Associations 2025	1.0	1.93979
NCIH196	CCLE Cell Line Gene CNV Profiles	-1.0	-1.76451
CX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.63629
correlation	GeneRIF Biological Term Annotations	1.0	null
directly	GeneRIF Biological Term Annotations	1.0	null
TRIM21	Hub Proteins Protein-Protein Interactions	1.0	null
mRNA_MYCN_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	-1.0	null
intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.642454
TRPS1	Pathway Commons Protein-Protein Interactions	1.0	null
KMS21BM	CCLE Cell Line Gene CNV Profiles	1.0	1.871
SW1417	CCLE Cell Line Gene CNV Profiles	-1.0	-1.32229
residue	GeneRIF Biological Term Annotations	1.0	null
epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.238406
HCC1171	CCLE Cell Line Gene CNV Profiles	-1.0	-1.41573
mRNA_NR5A2_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	-1.0	null
SNU475	CCLE Cell Line Gene CNV Profiles	-1.0	-1.46355
elongation	GeneRIF Biological Term Annotations	1.0	null
organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.0448
AR	ChEA Transcription Factor Targets	1.0	null
susceptibility	GeneRIF Biological Term Annotations	1.0	null
all	GeneRIF Biological Term Annotations	1.0	null
bpi	GeneRIF Biological Term Annotations	1.0	null
phenotype	GeneRIF Biological Term Annotations	1.0	null
DYNLRB1	Pathway Commons Protein-Protein Interactions	1.0	null
tuberculosis	GeneRIF Biological Term Annotations	1.0	null
Periodontitis (PAL4Q3)	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.522185
Egg white	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.729
GCNP_SHH_UP_EARLY.V1	MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations	-1.0	null
obtained	GeneRIF Biological Term Annotations	1.0	null
anterior lobe	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.146382
POU6F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.0289
box	GeneRIF Biological Term Annotations	1.0	null
Adult respiratory distress syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.195
IGROV1	CCLE Cell Line Gene CNV Profiles	1.0	1.42758
PMC11825621-210_2024_3353_MOESM2_ESM.xlsx-AR-IL13_AR	Rummagene Transcription Factor Associations 2026	1.0	null
hindbrain	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.063105
Gingival epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.729
salivary gland	GTEx Tissue Gene Expression Profiles	-1.0	-2.10021
GSE181003_3_v_2_selinexor_human	RummaGEO Drug Perturbation Signatures	-1.0	null
gingivitis	GeneRIF Biological Term Annotations	1.0	null
hsa-miR-330-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
extracellular region part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
Autoimmune disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.74
496100443_HIP_no dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.77747
production	GeneRIF Biological Term Annotations	1.0	null
activities	GeneRIF Biological Term Annotations	1.0	null
Intestinal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.667
large intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.268137
amastigotes	GeneRIF Biological Term Annotations	1.0	null
PC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.52581
GSE76425_0_v_12_lenalidomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
cellular_component	LOCATE Curated Protein Localization Annotations	1.0	null
Glucosidase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.113
head	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055873
CAL-85-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25415
Azurophil granule lumen	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
accumulated	GeneRIF Biological Term Annotations	1.0	null
Amastigote	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.219
upregulation	GeneRIF Biological Term Annotations	1.0	null
serum	GeneRIF Biological Term Annotations	1.0	null
isolated	GeneRIF Biological Term Annotations	1.0	null
TYK-NU.CP-R	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.962118
PPP2CA	Pathway Commons Protein-Protein Interactions	1.0	null
Immune System	Reactome Pathways 2024	1.0	null
hct116	GeneRIF Biological Term Annotations	1.0	null
oral	GeneRIF Biological Term Annotations	1.0	null
fungal infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.070955
PMC4366019-pone.0116096.s005.xlsx-Primary_positives_NOT_retested-Unnamed_8_NR4A2	Rummagene Transcription Factor Associations 2026	1.0	null
cellular_component	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
dcs	GeneRIF Biological Term Annotations	1.0	null
their	GeneRIF Biological Term Annotations	1.0	null
immune	GeneRIF Biological Term Annotations	1.0	null
dh14	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.757
tissues	GeneRIF Biological Term Annotations	1.0	null
response to lipopolysaccharide	GO Biological Process Annotations 2025	1.0	null
mechanistically	GeneRIF Biological Term Annotations	1.0	null
FOXF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.1431
FOXH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.146
organs	GeneRIF Biological Term Annotations	1.0	null
STRN3	Pathway Commons Protein-Protein Interactions	1.0	null
ribonucleoprotein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.097178
ll37	GeneRIF Biological Term Annotations	1.0	null
RXRG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.1243
496100304_HIP_no dementia_no TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.20063
ECC10	CCLE Cell Line Gene CNV Profiles	1.0	1.91001
myeloid	GeneRIF Biological Term Annotations	1.0	null
Biofilm	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.146
forces	GeneRIF Biological Term Annotations	1.0	null
parathyroid gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.191976
Viral infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.795
intracellular organelle part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
parathyroid hormone secreting cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.444884
Disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.042
HNF1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.8147
delivery	GeneRIF Biological Term Annotations	1.0	null
blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.751231
Amnion epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.59
drugsusceptible	GeneRIF Biological Term Annotations	1.0	null
Extracellular exosome	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
kinase	GeneRIF Biological Term Annotations	1.0	null
bladder	GeneRIF Biological Term Annotations	1.0	null
lifecycle	GeneRIF Biological Term Annotations	1.0	null
Disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	2.027
YWHAG	Pathway Commons Protein-Protein Interactions	1.0	null
Ileocecum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.751
Renal Cell Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
PMC4333457__F6	PFOCR Pathway Figure Associations 2024	1.0	null
intracellular	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
labor	GeneRIF Biological Term Annotations	1.0	null
KARPAS-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24283
Portio vaginalis cervicis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.613
External encapsulating structure	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
vacuolar lumen	GO Cellular Component Annotations 2023	1.0	null
BCL11A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.2488
ZNF547	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.0229
NCI-H1355	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.20911
GSE183327,GSE183328_3_v_0_ddit3_human	RummaGEO Gene Perturbation Signatures	1.0	null
Major Depressive Disorder	DisGeNET Gene-Disease Associations	1.0	null
DB	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04608
Bacterial Vaginosis	DisGeNET Gene-Disease Associations	1.0	null
GSE193351_1_v_0_ruxolitinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Monogenic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.282
Artery disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.488
Tumor Progression	DisGeNET Gene-Phenotype Associations	1.0	null
PMC8530322-pone.0258316.s002.xlsx-GG_776_no-AA_776_no-Symbol_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
lymphoid tissue	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
determines	GeneRIF Biological Term Annotations	1.0	null
estrogen receptor signaling pathway	GO Biological Process Annotations 2025	1.0	null
azurophil granule	GO Cellular Component Annotations 2025	1.0	null
Vacuolar lumen	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
thereby	GeneRIF Biological Term Annotations	1.0	null
Trypanosomoid form	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.192
DUXA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.6999
Bacterial infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.695
angiogenesis	GeneRIF Biological Term Annotations	1.0	null
mRNA_MYOD1_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	-1.0	null
displayed	GeneRIF Biological Term Annotations	1.0	null
NR2F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	89.4409
SNU61	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33894
Leptospirosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.474
OCI-AML5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.862843
ONECUT1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.6251
PRKAR2A	Pathway Commons Protein-Protein Interactions	1.0	null
vaginosis	GeneRIF Biological Term Annotations	1.0	null
hematopoietic stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.06857
defense response to protozoan	GO Biological Process Annotations 2023	1.0	null
Neutrophil degranulation	Reactome Pathways 2024	1.0	null
higher	GeneRIF Biological Term Annotations	1.0	null
beta1	GeneRIF Biological Term Annotations	1.0	null
Type 2 diabetes mellitus	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.224
Golgi cis cisterna	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.213
Defensin propeptide	InterPro Predicted Protein Domain Annotations	1.0	null
KYSE-70	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35826
synthesis	GeneRIF Biological Term Annotations	1.0	null
metencephalon	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.068391
dendritic	GeneRIF Biological Term Annotations	1.0	null
brownfat	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	1.35303
chain	GeneRIF Biological Term Annotations	1.0	null
cytoplasmic vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
neutrophil	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.00152
azurophil granule lumen	GO Cellular Component Annotations 2025	1.0	null
DYNC1H1	Pathway Commons Protein-Protein Interactions	1.0	null
cellular response to molecule of bacterial origin	GO Biological Process Annotations 2023	1.0	null
Kidney disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	2.027
leg	GeneRIF Biological Term Annotations	1.0	null
Extracellular vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
CHAGO-K-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.988771
Psoriasis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.271
spleen	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	0.832973
Behcet Syndrome	HuGE Navigator Gene-Phenotype Associations	1.0	null
FBXO38	Pathway Commons Protein-Protein Interactions	1.0	null
Gingiva	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.258
Secretory cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.554
endosome	GeneRIF Biological Term Annotations	1.0	null
HOP-92	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.953792
GSE107594_0_v_1_hmga2_human	RummaGEO Gene Perturbation Signatures	1.0	null
DCAF7	Pathway Commons Protein-Protein Interactions	1.0	null
pleomorphic	GeneRIF Biological Term Annotations	1.0	null
NCI-H292	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.988771
HCC366	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20186
Disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.517
PMC10657707-jad-96-jad230559-s005.xlsx-Sheet1-degree_of_nodes_in_PPI_network_for_MI_MITF	Rummagene Transcription Factor Associations 2026	1.0	null
hydrophobic	GeneRIF Biological Term Annotations	1.0	null
biologically	GeneRIF Biological Term Annotations	1.0	null
enteroendocrine cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.435672
induced	GeneRIF Biological Term Annotations	1.0	null
Behcet Syndrome	DisGeNET Gene-Disease Associations	1.0	null
PMC8025515-12859_2021_4105_MOESM12_ESM.xlsx-PW1-gene_stable_id_PEG3	Rummagene Transcription Factor Associations 2026	1.0	null
stellate	GeneRIF Biological Term Annotations	1.0	null
product	GeneRIF Biological Term Annotations	1.0	null
cytosolic large ribosomal subunit	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.65345
cellular response to oxygen-containing compound	GO Biological Process Annotations 2025	1.0	null
Mouth	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.146
skin_6a	HPA Tissue Sample Gene Expression Profiles	1.0	0.934947
CAL 54	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.899783
gingiva	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.436438
YWHAB	Pathway Commons Protein-Protein Interactions	1.0	null
Neonatal jaundice	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.043
Dental caries (decayed and filled deciduous teeth)	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.530103
CLOCK	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.7527
did	GeneRIF Biological Term Annotations	1.0	null
Hematologic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.076
RERF-LC-KJ	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.41787
Ovarian follicular epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.619
Glomerulonephritis	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	2.027
sensitivities	GeneRIF Biological Term Annotations	1.0	null
496100442_PCx_possible Alzheimer's disease_no TBI_95-99_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.11683
Obesity	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.185
Lamina propria	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.309
pancreas	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	1.2991
SOX18	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.0726
serine/threonine protein kinase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.118471
transcription elongation factor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.227397
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
proliferation	GeneRIF Biological Term Annotations	1.0	null
inhibit	GeneRIF Biological Term Annotations	1.0	null
oral candidiasis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.583163
mechanisms	GeneRIF Biological Term Annotations	1.0	null
highresolution	GeneRIF Biological Term Annotations	1.0	null
WDR60	Pathway Commons Protein-Protein Interactions	1.0	null
discharge	GeneRIF Biological Term Annotations	1.0	null
spleen_3d	HPA Tissue Sample Gene Expression Profiles	1.0	0.948677
Colitis	DisGeNET Gene-Disease Associations	1.0	null
PMC9355307__F4	PFOCR Pathway Figure Associations 2024	1.0	null
nature	GeneRIF Biological Term Annotations	1.0	null
Trypanosomiasis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.07
preventing	GeneRIF Biological Term Annotations	1.0	null
496100380_FWM_no dementia_no TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.40284
cellular response to lipopolysaccharide	GO Biological Process Annotations 2023	1.0	null
Sepal	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.55
viral	GeneRIF Biological Term Annotations	1.0	null
cell part	LOCATE Curated Protein Localization Annotations	1.0	null
viral genome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.099035
uncoating	GeneRIF Biological Term Annotations	1.0	null
membrane-bounded vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
structures	GeneRIF Biological Term Annotations	1.0	null
analyzed	GeneRIF Biological Term Annotations	1.0	null
496100474_FWM_possible Alzheimer's disease_TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.544
alphadefensins	GeneRIF Biological Term Annotations	1.0	null
T cell migration	GO Biological Process Annotations 2023	1.0	null
DYNLL2	Pathway Commons Protein-Protein Interactions	1.0	null
antihiv1	GeneRIF Biological Term Annotations	1.0	null
Cystic fibrosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.114
HCC1171	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06149
abnormally	GeneRIF Biological Term Annotations	1.0	null
salt	GeneRIF Biological Term Annotations	1.0	null
CW2	CCLE Cell Line Gene CNV Profiles	1.0	1.61714
HIST1H2AJ	Pathway Commons Protein-Protein Interactions	1.0	null
contrasting	GeneRIF Biological Term Annotations	1.0	null
Western equine encephalitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.104
RORB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.4854
HYDROCORTISONE BUTYRATE	DGIdb Drug Targets 2026	1.0	2.6466
Golgi cisterna membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.357
stools	GeneRIF Biological Term Annotations	1.0	null
secretory granule lumen	GO Cellular Component Annotations 2023	1.0	null
skeletal system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052471
virion	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.215761
Lymphatic system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.014
MTPAP	Pathway Commons Protein-Protein Interactions	1.0	null
Brain disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.138
TRIM28	ChEA Transcription Factor Targets	1.0	null
SU-DHL-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.39858
connective tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.050038
NR4A1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.5834
mainly	GeneRIF Biological Term Annotations	1.0	null
idiopathic interstitial pneumonia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.245046
trunk	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055954
Anophthalmia And Pulmonary Hypoplasia	DisGeNET Gene-Disease Associations	1.0	null
defense response to Gram-negative bacterium	GO Biological Process Annotations 2025	1.0	null
RUNX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.6913
NCI-H1155	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49384
PMC9396374-Table_4.XLSX-AR_related_genes_from_GeneCards-gene_symbol_AR	Rummagene Transcription Factor Associations 2026	1.0	null
Staphylococcus aureus infection	KEGG Pathways 2026	1.0	null
Neutrophil extracellular trap	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.43
antimicrobial humoral response	GO Biological Process Annotations 2023	1.0	null
potent	GeneRIF Biological Term Annotations	1.0	null
microgml	GeneRIF Biological Term Annotations	1.0	null
Leukemia	DisGeNET Gene-Disease Associations	1.0	null
NCI-H929	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.986022
HCC202	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.46388
bronchial disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.096226
JHOS-4	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.99615
VMRC-LCD	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09112
uterine disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.552851
TGIF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.8052
modulates	GeneRIF Biological Term Annotations	1.0	null
hnp13	GeneRIF Biological Term Annotations	1.0	null
similarity	GeneRIF Biological Term Annotations	1.0	null
intracellular non-membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.055202
Recurrent Upper Respiratory Tract Infection	DisGeNET Gene-Disease Associations	1.0	null
Small intestine cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.756
PFDN1	Pathway Commons Protein-Protein Interactions	1.0	null
cellular response to lipid	GO Biological Process Annotations 2025	1.0	null
PRTN3	Pathway Commons Protein-Protein Interactions	1.0	null
Coronary artery disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.183
hematopoietic system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.757432
targeting	GeneRIF Biological Term Annotations	1.0	null
alimentary canal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.578416
colon	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.323144
collagen-containing extracellular matrix	GO Cellular Component Annotations 2023	1.0	null
PMC5059470-ncomms12992-s6.xlsx-CRS-NOCRS-Supplementary_Data_5_Integration_Frequency_in_cirrhotic_CRS_and_non-cirrhotic_no-CRS_Tumor_Samples_TWIST1	Rummagene Transcription Factor Associations 2026	1.0	null
RORA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	54.6567
teeth hard tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.305587
Cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.203
Venom apparatus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.67
clear	GeneRIF Biological Term Annotations	1.0	null
PKNOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.2353
cis-Golgi network	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.843
specificity	GeneRIF Biological Term Annotations	1.0	null
Behcet's disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.072
Periodontitis	DisGeNET Gene-Disease Associations	1.0	null
ovary	HPA Tissue Gene Expression Profiles	-1.0	-1.10599
lymphocyte chemotaxis	GO Biological Process Annotations 2025	1.0	null
appears	GeneRIF Biological Term Annotations	1.0	null
Exodeoxyribonuclease VII complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.562
hela	GeneRIF Biological Term Annotations	1.0	null
resulting	GeneRIF Biological Term Annotations	1.0	null
nonspecifically	GeneRIF Biological Term Annotations	1.0	null
brain stem	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059583
small ribosomal subunit	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.41612
GSE234155_7_v_1_nfix_human	RummaGEO Gene Perturbation Signatures	1.0	null
killing by host of symbiont cells	GO Biological Process Annotations 2025	1.0	null
mRNA_T_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	-1.0	null
ZNF324	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.1075
sepsis; systemic infection	GAD Gene-Disease Associations	1.0	null
IgA glomerulonephritis	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	2.027
Right atrium	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.333
T cell migration	GO Biological Process Annotations 2025	1.0	null
PMC8569982-41065_2021_205_MOESM1_ESM.xlsx-mono_THP1_a2b_tpm1-gene_GLI2	Rummagene Transcription Factor Associations 2026	1.0	null
behcet	GeneRIF Biological Term Annotations	1.0	null
dominant	GeneRIF Biological Term Annotations	1.0	null
decline	GeneRIF Biological Term Annotations	1.0	null
DMBT1	Pathway Commons Protein-Protein Interactions	1.0	null
HOXA10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.9562
IGHA1	Pathway Commons Protein-Protein Interactions	1.0	null
weak	GeneRIF Biological Term Annotations	1.0	null
HCC1493	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09202
extracellular membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
RNR2	Hub Proteins Protein-Protein Interactions	1.0	null
parasite	GeneRIF Biological Term Annotations	1.0	null
NCI-H322T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07988
pregnant	GeneRIF Biological Term Annotations	1.0	null
more	GeneRIF Biological Term Annotations	1.0	null
PMC5069771__F2	PFOCR Pathway Figure Associations 2024	1.0	null
CAL78	CCLE Cell Line Gene CNV Profiles	-1.0	-1.81205
respiratory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.37629
basis	GeneRIF Biological Term Annotations	1.0	null
Endocytic vesicle lumen	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.147
GLCCI1	Pathway Commons Protein-Protein Interactions	1.0	null
crystal	GeneRIF Biological Term Annotations	1.0	null
diagnosing	GeneRIF Biological Term Annotations	1.0	null
reducing	GeneRIF Biological Term Annotations	1.0	null
Pellicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.581
catalytic complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.046254
blood	GTEx Tissue Gene Expression Profiles	1.0	1.89344
Glioblastoma	CTD Gene-Disease Associations	1.0	1.08655
bacteriocidal	GeneRIF Biological Term Annotations	1.0	null
JHH4	CCLE Cell Line Gene CNV Profiles	-1.0	-1.75181
GSE183327,GSE183328_1_v_0_ddit3_human	RummaGEO Gene Perturbation Signatures	1.0	null
diagnostic	GeneRIF Biological Term Annotations	1.0	null
CPC-N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.969687
HCMEC cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.712
496100500_PCx_probable Alzheimer's disease_TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.33536
alpha	GeneRIF Biological Term Annotations	1.0	null
peritoneum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.124344
ATF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.4755
intracellular organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.222224
protein kinase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.082829
hsa-miR-4468	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
hydrophobicity	GeneRIF Biological Term Annotations	1.0	null
Chagas disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.175
Primary bacterial infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.548
Defensins	Reactome Pathways 2024	1.0	null
SPSB1	Hub Proteins Protein-Protein Interactions	1.0	null
amount	GeneRIF Biological Term Annotations	1.0	null
hypophysis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.084298
intracellular part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.046182
ATP6V1B1	Hub Proteins Protein-Protein Interactions	1.0	null
blast cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.068172
Gastrointestinal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.833
IRF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	54.0
BT-549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.915686
reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.071962
secreted	GeneRIF Biological Term Annotations	1.0	null
Epimastigote	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.755
bone development disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.07774
large ribosomal subunit	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.516532
neoplasia	GeneRIF Biological Term Annotations	1.0	null
Innate Immune System	Reactome Pathways 2024	1.0	null
hnp1	GeneRIF Biological Term Annotations	1.0	null
PMC4366019-pone.0116096.s005.xlsx-Primary_positives_NOT_retested-Primary_S6P_positives_NOT_selected_for_retesting_with_the_4_individual_RNAi_used_in_the_intial_screen_NR4A2	Rummagene Transcription Factor Associations 2026	1.0	null
PMC11167905-10194_2024_1805_MOESM1_ESM.xlsx-S6-Table_S6_MR_results_of_brain_eQTLs_and_migraine_NR3C2	Rummagene Transcription Factor Associations 2026	1.0	null
Aggressive periodontitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.69
Benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.084
1321N1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.40533
HUG1N	CCLE Cell Line Gene CNV Profiles	1.0	1.53574
hnp	GeneRIF Biological Term Annotations	1.0	null
Syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.291
Granulocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.228
external encapsulating structure	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.434591
PMC4221415__F5	PFOCR Pathway Figure Associations 2023	1.0	null
Alpha-defensin	InterPro Predicted Protein Domain Annotations	1.0	null
ARGFX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.1526
CKB	Pathway Commons Protein-Protein Interactions	1.0	null
Spleen	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
autoimmune disease of cardiovascular system	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.510728
496100461_PCx_possible Alzheimer's disease_TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.1601
Carbohydrate metabolic disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.572
Synovia	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.805
diseases	GeneRIF Biological Term Annotations	1.0	null
early	GeneRIF Biological Term Annotations	1.0	null
G140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.837512
Bruck syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.052
ETV2::HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.6801
PMC6851586__F1	PFOCR Pathway Figure Associations 2023	1.0	null
IM-95	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.73898
lymphoid tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.0519
epidermal	GeneRIF Biological Term Annotations	1.0	null
Primary immunodeficiency disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.738
vorinostat_homo sapiens_gpl6884_gse46703	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
organelle part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
EML3	Pathway Commons Protein-Protein Interactions	1.0	null
transcription	GeneRIF Biological Term Annotations	1.0	null
cytoplasmic membrane-bounded vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
molecule	GeneRIF Biological Term Annotations	1.0	null
viscus	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
regulator	GeneRIF Biological Term Annotations	1.0	null
NCI-H2198	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.915686
SB 203580	CTD Gene-Chemical Interactions	1.0	null
neutrophil	GeneRIF Biological Term Annotations	1.0	null
HCC4017	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-3.64449
Nutrition disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.218
joint	GeneRIF Biological Term Annotations	1.0	null
carpel	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.223177
vascular	GeneRIF Biological Term Annotations	1.0	null
megakaryoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.16311
PMC4594188__F1C	PFOCR Pathway Figure Associations 2023	1.0	null
POU4F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.9384
onset	GeneRIF Biological Term Annotations	1.0	null
lysosome	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.082722
importance	GeneRIF Biological Term Annotations	1.0	null
Golgi cisterna	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.81
extracellular vesicular exosome	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
adipocytes	GeneRIF Biological Term Annotations	1.0	null
FAM83D	Pathway Commons Protein-Protein Interactions	1.0	null
Exocrine gland	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.146
PBX1	ChEA Transcription Factor Targets	1.0	null
dysostosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.261245
control	GeneRIF Biological Term Annotations	1.0	null
MORC3	Pathway Commons Protein-Protein Interactions	1.0	null
primary	GeneRIF Biological Term Annotations	1.0	null
well	GeneRIF Biological Term Annotations	1.0	null
trend	GeneRIF Biological Term Annotations	1.0	null
TLK2	Pathway Commons Protein-Protein Interactions	1.0	null
IGHG2	Pathway Commons Protein-Protein Interactions	1.0	null
medications	GeneRIF Biological Term Annotations	1.0	null
HIST2H2BF	Pathway Commons Protein-Protein Interactions	1.0	null
kill	GeneRIF Biological Term Annotations	1.0	null
Gastrointestinal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.186
positive transcription elongation factor complex b	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.334356
preterm	GeneRIF Biological Term Annotations	1.0	null
Primary lysosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.865
IGLC2	Pathway Commons Protein-Protein Interactions	1.0	null
ESRRB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.1511
seem	GeneRIF Biological Term Annotations	1.0	null
systemic mycosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.094966
KPNA3	Pathway Commons Protein-Protein Interactions	1.0	null
reduces	GeneRIF Biological Term Annotations	1.0	null
nuclear part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.046172
large intestine cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.053645
small intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.65543
Platelet alpha granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.065
opportunistic mycosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.115398
secretory granule lumen	GO Cellular Component Annotations 2025	1.0	null
PBX1-22567123-OVCAR3-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
NCI-H820	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.53655
Brain disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.547
cell part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
antibacterial	GeneRIF Biological Term Annotations	1.0	null
Lower respiratory tract disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.529
combining	GeneRIF Biological Term Annotations	1.0	null
precursor	GeneRIF Biological Term Annotations	1.0	null
STK25	Pathway Commons Protein-Protein Interactions	1.0	null
whereas	GeneRIF Biological Term Annotations	1.0	null
Systemic scleroderma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.046
NCI-H146	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.3135
placenta disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.615138
Neoplasm Metastasis	DisGeNET Gene-Phenotype Associations	1.0	null
wall	GeneRIF Biological Term Annotations	1.0	null
HCC70	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.99615
RT4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16783
solidstate	GeneRIF Biological Term Annotations	1.0	null
exercise	GeneRIF Biological Term Annotations	1.0	null
CDX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.2703
molecular	GeneRIF Biological Term Annotations	1.0	null
YWHAE	Pathway Commons Protein-Protein Interactions	1.0	null
Human immunodeficiency virus infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.139
stabilizing	GeneRIF Biological Term Annotations	1.0	null
Alpha-defensins	Reactome Pathways 2014	1.0	null
ASPC1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.57056
healthy	GeneRIF Biological Term Annotations	1.0	null
cytosolic ribosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.40714
hunt	GeneRIF Biological Term Annotations	1.0	null
inducing	GeneRIF Biological Term Annotations	1.0	null
HOXB5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.8903
NCI-H522	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08608
SW 480	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.21562
hypersensitivity reaction type ii disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.05574
hbd1	GeneRIF Biological Term Annotations	1.0	null
capsid	GeneRIF Biological Term Annotations	1.0	null
Inflammation	DisGeNET Gene-Phenotype Associations	1.0	null
paneth cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.64206
Lupus Erythematosus	DisGeNET Gene-Disease Associations	1.0	null
whole plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.082853
doses	GeneRIF Biological Term Annotations	1.0	null
site	GeneRIF Biological Term Annotations	1.0	null
HIST1H4F	Pathway Commons Protein-Protein Interactions	1.0	null
cterminal	GeneRIF Biological Term Annotations	1.0	null
Cardiovascular system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.663
Malignant Transformation	DisGeNET Gene-Phenotype Associations	1.0	null
interacts	GeneRIF Biological Term Annotations	1.0	null
496100594_TCx_possible Alzheimer's disease_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.18806
enhance	GeneRIF Biological Term Annotations	1.0	null
GATA3	JASPAR Predicted Transcription Factor Targets	1.0	null
offers	GeneRIF Biological Term Annotations	1.0	null
infections	GeneRIF Biological Term Annotations	1.0	null
Coronary Heart Disease	DisGeNET Gene-Disease Associations	1.0	null
trypanosome	GeneRIF Biological Term Annotations	1.0	null
PKNOX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.447
therapeutic	GeneRIF Biological Term Annotations	1.0	null
Mouth disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.386
primary lysosome	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
vestibular	GeneRIF Biological Term Annotations	1.0	null
muscles	GeneRIF Biological Term Annotations	1.0	null
Autosomal recessive disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.093
immature	GeneRIF Biological Term Annotations	1.0	null
GI1	CCLE Cell Line Gene CNV Profiles	1.0	1.42193
GSE154350_1_v_0_ascl2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
DEFA4	Pathway Commons Protein-Protein Interactions	1.0	null
end	GeneRIF Biological Term Annotations	1.0	null
thyroid gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.071453
gastrointestinal tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.59646
Asthma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.224
processed	GeneRIF Biological Term Annotations	1.0	null
antibodies	GeneRIF Biological Term Annotations	1.0	null
Rectal adenocarcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.113
Rheumatic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.044
MASTL	Pathway Commons Protein-Protein Interactions	1.0	null
ornithine	GeneRIF Biological Term Annotations	1.0	null
protective	GeneRIF Biological Term Annotations	1.0	null
MEG-01 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.01
PMC7708794-mmc2.xlsx-DGE_table_Imm-high_vs_Imm-low-TFT_TBXT	Rummagene Transcription Factor Associations 2026	1.0	null
abdomen	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.065691
Dk	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.308
Ovarian Neoplasms	CTD Gene-Disease Associations	1.0	1.55822
Carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.139
cavity	GeneRIF Biological Term Annotations	1.0	null
Gingival disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.204
neutrophils	GeneRIF Biological Term Annotations	1.0	null
Aggressive Periodontitis	DisGeNET Gene-Disease Associations	1.0	null
Overnutrition	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.184
colorectum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.24676
rat	GeneRIF Biological Term Annotations	1.0	null
multidrugresistant	GeneRIF Biological Term Annotations	1.0	null
chiral	GeneRIF Biological Term Annotations	1.0	null
KANK1	Pathway Commons Protein-Protein Interactions	1.0	null
bonemarrow_6b	HPA Tissue Sample Gene Expression Profiles	1.0	1.78551
cell wall	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.465598
peripheral blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.289582
replication	GeneRIF Biological Term Annotations	1.0	null
eukaryotic	GeneRIF Biological Term Annotations	1.0	null
MKN-74	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02719
Unipolar Depression	DisGeNET Gene-Disease Associations	1.0	null
whole body	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
chromosomal part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.04352
view	GeneRIF Biological Term Annotations	1.0	null
Nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.439
defensins	GeneRIF Biological Term Annotations	1.0	null
MPO	Pathway Commons Protein-Protein Interactions	1.0	null
Quercetin	CTD Gene-Chemical Interactions	1.0	null
IRF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.9486
Caput epididymis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.642
Disease of anatomical entity	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	2.027
extracellular organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
elisa	GeneRIF Biological Term Annotations	1.0	null
periodontitis	GeneRIF Biological Term Annotations	1.0	null
rupture	GeneRIF Biological Term Annotations	1.0	null
SIHA	CCLE Cell Line Gene CNV Profiles	-1.0	-2.042
lung	GTEx Tissue Gene Expression Profiles	1.0	0.956897
inflammatory bowel disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.163938
characterization	GeneRIF Biological Term Annotations	1.0	null
Urinary tract infection	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.098
SNU245	CCLE Cell Line Gene CNV Profiles	-1.0	-1.49372
pneumonia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.235268
HIST1H2AD	Pathway Commons Protein-Protein Interactions	1.0	null
496100504_TCx_probable Alzheimer's disease_TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.56617
Lung microvascular endothelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.02
experiment	GeneRIF Biological Term Annotations	1.0	null
epithelial	GeneRIF Biological Term Annotations	1.0	null
defense	GeneRIF Biological Term Annotations	1.0	null
COLO-704	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.14835
eosinophil	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.21673
enhanced	GeneRIF Biological Term Annotations	1.0	null
adenoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.500761
S100A8 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.144
groups	GeneRIF Biological Term Annotations	1.0	null
exception	GeneRIF Biological Term Annotations	1.0	null
calyx	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.968523
PMC11481653-mmc33.pdf-140-SOX4_SOX4	Rummagene Transcription Factor Associations 2026	1.0	null
dermis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.107273
than	GeneRIF Biological Term Annotations	1.0	null
TGIF2LY	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.1041
PMC11317381-DataSheet4.PDF-1-WT1_WT1	Rummagene Transcription Factor Associations 2026	1.0	null
peritoneal	GeneRIF Biological Term Annotations	1.0	null
cancerous	GeneRIF Biological Term Annotations	1.0	null
DOHH2	CCLE Cell Line Gene CNV Profiles	1.0	1.47859
endometriosis	GeneRIF Biological Term Annotations	1.0	null
HCC2279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.15349
STAT2	Pathway Commons Protein-Protein Interactions	1.0	null
intracellular organelle lumen	GO Cellular Component Annotations 2025	1.0	null
Superficial temporal artery	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.914
PMC2820517-pcbi.1000671.s006.txt--ZNF449_ZNF449	Rummagene Transcription Factor Associations 2026	1.0	null
Ulcerative colitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.376
tooth	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.131793
periodontal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.341639
UKE-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.74347
CL-11	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.99615
HIST3H2A	Pathway Commons Protein-Protein Interactions	1.0	null
SOX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.2196
Chronic Obstructive Airway Disease	DisGeNET Gene-Disease Associations	1.0	null
Cytolytic granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.521
496100426_PCx_no dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	6.40205
disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.040763
BXPC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.837512
azurophil granule lumen	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
PATU8988S	CCLE Cell Line Gene CNV Profiles	-1.0	-2.48975
finding	GeneRIF Biological Term Annotations	1.0	null
ME-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.987004
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.809803
bone marrow	HPA Tissue Protein Expression Profiles	1.0	1.81273
mRNA_SALL4_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	-1.0	null
HNF1A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.9241
KCL22	CCLE Cell Line Gene CNV Profiles	1.0	1.62128
gingival fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.345558
Disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.121
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.82736
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.54982
nephropathy	GeneRIF Biological Term Annotations	1.0	null
sjsten	GeneRIF Biological Term Annotations	1.0	null
aureus	GeneRIF Biological Term Annotations	1.0	null
molecules	GeneRIF Biological Term Annotations	1.0	null
digestive gland	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
gastrointestinal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.482084
CDX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.4144
intracellular estrogen receptor signaling pathway	GO Biological Process Annotations 2023	1.0	null
Whole body	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Progesterone	CTD Gene-Chemical Interactions	1.0	null
subjects	GeneRIF Biological Term Annotations	1.0	null
496100667_TCx_no dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.39163
Neoplasm Metastasis	CTD Gene-Disease Associations	1.0	1.46986
position	GeneRIF Biological Term Annotations	1.0	null
Ileum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.695
Autoimmune disease of gastrointestinal tract	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.367
496100310_TCx_no dementia_no TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.31537
GSE94849_6_v_5_pinometostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
IM-95M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49384
Autoimmune disease of skin and connective tissue	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.235
HNF4A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.75
Preterm premature rupture of the membranes	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.09
A549	CCLE Cell Line Gene CNV Profiles	1.0	1.69948
lower respiratory tract disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.393374
Leukocyte adhesion deficiency 1	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.175
16140955-Table2	GeneSigDB Published Gene Signatures	1.0	null
bone disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.053563
Hepatobiliary disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.157
properties	GeneRIF Biological Term Annotations	1.0	null
bone marrow cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.066094
complement	GeneRIF Biological Term Annotations	1.0	null
most	GeneRIF Biological Term Annotations	1.0	null
HIST1H2AC	Pathway Commons Protein-Protein Interactions	1.0	null
Ovarian cyst	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.576
HPBALL	CCLE Cell Line Gene CNV Profiles	1.0	1.53861
Respiratory failure	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.183
ulcers	GeneRIF Biological Term Annotations	1.0	null
Influenza	DisGeNET Gene-Disease Associations	1.0	null
IGKC	Pathway Commons Protein-Protein Interactions	1.0	null
Vasculitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.375
Gut wall	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.943
third	GeneRIF Biological Term Annotations	1.0	null
cytosolic small ribosomal subunit	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.516532
vacuolar part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
RORC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.1602
Digestive gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
PIGR	Pathway Commons Protein-Protein Interactions	1.0	null
KYSE-450	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12402
MEIS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.198
propeptide	GeneRIF Biological Term Annotations	1.0	null
bronchopneumonia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.647743
presence	GeneRIF Biological Term Annotations	1.0	null
Venom gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.689
ZMYM4	Pathway Commons Protein-Protein Interactions	1.0	null
marrow cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.071905
Megakaryoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.946
diphtheria	GeneRIF Biological Term Annotations	1.0	null
Drug-Induced Liver Injury	CTD Gene-Disease Associations	1.0	1.17761
Endometriosis	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.6
precursors	GeneRIF Biological Term Annotations	1.0	null
carcinomas	GeneRIF Biological Term Annotations	1.0	null
Calprotectin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.586
Azurophil granule lumen	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.352
impaired	GeneRIF Biological Term Annotations	1.0	null
ANXA1	Pathway Commons Protein-Protein Interactions	1.0	null
FBXO30	Pathway Commons Protein-Protein Interactions	1.0	null
apud cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.41848
POLR2A_H54_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
decrease	GeneRIF Biological Term Annotations	1.0	null
496100495_FWM_no dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.81423
cytoplasmic part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.049494
copy	GeneRIF Biological Term Annotations	1.0	null
trypanosoma	GeneRIF Biological Term Annotations	1.0	null
killing	GeneRIF Biological Term Annotations	1.0	null
2-(4-morpholinyl)-8-phenyl-4H-1-benzopyran-4-one	CTD Gene-Chemical Interactions	1.0	null
Skin disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.328
colon cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.185612
collagen-containing extracellular matrix	GO Cellular Component Annotations 2025	1.0	null
Condyloma	DisGeNET Gene-Disease Associations	1.0	null
amps	GeneRIF Biological Term Annotations	1.0	null
mRNA_SOX2_17515932	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
blood plasma	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.557263
insulin	GeneRIF Biological Term Annotations	1.0	null
NEK9	Pathway Commons Protein-Protein Interactions	1.0	null
Colorectal Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
afferent	GeneRIF Biological Term Annotations	1.0	null
Mesenteric lymph node	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.875
effect	GeneRIF Biological Term Annotations	1.0	null
virusmediated	GeneRIF Biological Term Annotations	1.0	null
Gastrointestinal endocrine cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.523
inhibition	GeneRIF Biological Term Annotations	1.0	null
HT-29	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.63629
Immune system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.767
HIST1H2AH	Pathway Commons Protein-Protein Interactions	1.0	null
clostridium	GeneRIF Biological Term Annotations	1.0	null
RT-112	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.951329
Rheumatoid arthritis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.462
macromolecular complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.047273
trimester	GeneRIF Biological Term Annotations	1.0	null
another	GeneRIF Biological Term Annotations	1.0	null
hnps	GeneRIF Biological Term Annotations	1.0	null
gingival	GeneRIF Biological Term Annotations	1.0	null
HIST1H2BF	Pathway Commons Protein-Protein Interactions	1.0	null
Inherited metabolic disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.621
lung disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.397098
indicators	GeneRIF Biological Term Annotations	1.0	null
Diarrhea	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.028
serve	GeneRIF Biological Term Annotations	1.0	null
def1	GeneRIF Biological Term Annotations	1.0	null
MV-4-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01826
SRF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.3309
alphadefensin	GeneRIF Biological Term Annotations	1.0	null
496100451_TCx_no dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.01035
hadv	GeneRIF Biological Term Annotations	1.0	null
efficiently	GeneRIF Biological Term Annotations	1.0	null
region	GeneRIF Biological Term Annotations	1.0	null
restored	GeneRIF Biological Term Annotations	1.0	null
plasma	GeneRIF Biological Term Annotations	1.0	null
OCT4-20526341-ESCS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
detrusor	GeneRIF Biological Term Annotations	1.0	null
hypersensitivity reaction disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.049927
GSE264621_1_v_6_secretin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
PMC11923864-ADVS-12-2413713-s002.xlsx-Fe3O4_SiO2_NP_of_LTF_spike-in-Unnamed_0_LTF	Rummagene Transcription Factor Associations 2026	1.0	null
peptide	GeneRIF Biological Term Annotations	1.0	null
tissue	GeneRIF Biological Term Annotations	1.0	null
CEBPA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.1534
FOXP1-21924763-HESC-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
Gastrointestinal system benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.023
adult stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062294
U266B1	CCLE Cell Line Gene CNV Profiles	1.0	2.07539
expressions	GeneRIF Biological Term Annotations	1.0	null
vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
crypt	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.07618
SERPINF2	Pathway Commons Protein-Protein Interactions	1.0	null
HCC515	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.46388
Rheumatoid Arthritis	DisGeNET Gene-Disease Associations	1.0	null
phagocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.83448
IRF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	64.2402
Cervical mucus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.687
lymphocyte chemotaxis	GO Biological Process Annotations 2023	1.0	null
cytoplasm	LOCATE Curated Protein Localization Annotations	1.0	null
fetal membrane	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.364139
controls	GeneRIF Biological Term Annotations	1.0	null
Pancreatitis	DisGeNET Gene-Disease Associations	1.0	null
colorectal	GeneRIF Biological Term Annotations	1.0	null
mRNA_ASCL1_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	-1.0	null
preventive	GeneRIF Biological Term Annotations	1.0	null
Ciliary membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.074
fibroblasts	GeneRIF Biological Term Annotations	1.0	null
PMC10773028-40364_2023_552_MOESM2_ESM.xlsx-Variants_sheet-TFT_TBXT	Rummagene Transcription Factor Associations 2026	1.0	null
Heart disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.067
JHOS4	CCLE Cell Line Gene CNV Profiles	-1.0	-1.68125
ramsay	GeneRIF Biological Term Annotations	1.0	null
mRNA_GADD45A_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
extracellular region	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
toxin	GeneRIF Biological Term Annotations	1.0	null
mRNA_TCF3_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	-1.0	null
antiadenoviral	GeneRIF Biological Term Annotations	1.0	null
side	GeneRIF Biological Term Annotations	1.0	null
gland	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Extracellular organelle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
concentrations	GeneRIF Biological Term Annotations	1.0	null
liver	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Vesicle lumen	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.758
nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.050974
hiv1seronegative	GeneRIF Biological Term Annotations	1.0	null
glucose	GeneRIF Biological Term Annotations	1.0	null
HIST1H2AB	Pathway Commons Protein-Protein Interactions	1.0	null
distinct	GeneRIF Biological Term Annotations	1.0	null
bonemarrow_5a	HPA Tissue Sample Gene Expression Profiles	1.0	1.90721
ZNF609	Pathway Commons Protein-Protein Interactions	1.0	null
Multisystem inflammatory syndrome in children	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.039
SOX8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.9889
collagen-containing extracellular matrix	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
action	GeneRIF Biological Term Annotations	1.0	null
Sepsis	DisGeNET Gene-Disease Associations	1.0	null
Severe Sepsis	DisGeNET Gene-Disease Associations	1.0	null
GSE76425_0_v_7_lenalidomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
structure	GeneRIF Biological Term Annotations	1.0	null
Villus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.607
NCI-H2009	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10169
informative	GeneRIF Biological Term Annotations	1.0	null
venous	GeneRIF Biological Term Annotations	1.0	null
inhibits	GeneRIF Biological Term Annotations	1.0	null
bkv	GeneRIF Biological Term Annotations	1.0	null
dysplastic	GeneRIF Biological Term Annotations	1.0	null
carboxy-terminal domain protein kinase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.326078
corolla	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.675765
PIP	Pathway Commons Protein-Protein Interactions	1.0	null
mucosal immune response	GO Biological Process Annotations 2023	1.0	null
HCC70	CCLE Cell Line Gene CNV Profiles	-1.0	-2.23061
Autoimmune disease of musculoskeletal system	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.597
alpha1	GeneRIF Biological Term Annotations	1.0	null
mesentery	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.155634
female reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.220424
hsa-miR-26b-5p	MiRTarBase microRNA Targets	1.0	null
Colon mucinous adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.179
WDR34	Pathway Commons Protein-Protein Interactions	1.0	null
cellular response to oxygen-containing compound	GO Biological Process Annotations 2023	1.0	null
GSE172189_0_v_1_venetoclax_human	RummaGEO Drug Perturbation Signatures	1.0	null
exhibiting	GeneRIF Biological Term Annotations	1.0	null
OPM-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.854241
Lysosome	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
myeloid progenitor cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.07136
originate	GeneRIF Biological Term Annotations	1.0	null
IGLC6	Pathway Commons Protein-Protein Interactions	1.0	null
SNU201	CCLE Cell Line Gene CNV Profiles	1.0	2.01832
Pneumonia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.19
RCC10RGB	CCLE Cell Line Gene CNV Profiles	1.0	1.86144
PMC11387829-41419_2024_7045_MOESM4_ESM.pdf-200-CUX2_CUX2	Rummagene Transcription Factor Associations 2026	1.0	null
Disease by infectious agent	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.976
SNU620	CCLE Cell Line Gene CNV Profiles	1.0	1.76226
act	GeneRIF Biological Term Annotations	1.0	null
NR2F6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.3619
Blood protein levels	GWAS Catalog SNP-Phenotype Associations 2025	1.0	1.15229
mRNA_CDX2_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	-1.0	null
parameters	GeneRIF Biological Term Annotations	1.0	null
PMC8724844-bt-30-1-98-supple2.xlsx-GO_BP-SP1_SP1	Rummagene Transcription Factor Associations 2026	1.0	null
GATA1::TAL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.02
vacuolar lumen	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
lipid	GeneRIF Biological Term Annotations	1.0	null
TP53	JASPAR Predicted Transcription Factor Targets	1.0	null
promote	GeneRIF Biological Term Annotations	1.0	null
PMC4221415__F5	PFOCR Pathway Figure Associations 2024	1.0	null
wound	GeneRIF Biological Term Annotations	1.0	null
Golgi lumen	GO Cellular Component Annotations 2023	1.0	null
MT-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.969988
HIST1H2BL	Pathway Commons Protein-Protein Interactions	1.0	null
FOXB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.7952
intracellular organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.049047
IFFO2	Pathway Commons Protein-Protein Interactions	1.0	null
macrophages	GeneRIF Biological Term Annotations	1.0	null
TFIP11	Hub Proteins Protein-Protein Interactions	1.0	null
AR-20517297-VCAP-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
within	GeneRIF Biological Term Annotations	1.0	null
MFM-223	COSMIC Cell Line Gene CNV Profiles	1.0	2.15593
mRNA_TCF7L2_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	-1.0	null
held	GeneRIF Biological Term Annotations	1.0	null
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0452
leukocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.687592
defa	GeneRIF Biological Term Annotations	1.0	null
encodes	GeneRIF Biological Term Annotations	1.0	null
defense response to bacterium	GO Biological Process Annotations 2023	1.0	null
midpregnancy	GeneRIF Biological Term Annotations	1.0	null
Salivary gland	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.146
repair	GeneRIF Biological Term Annotations	1.0	null
hnp2	GeneRIF Biological Term Annotations	1.0	null
KANK2	Pathway Commons Protein-Protein Interactions	1.0	null
benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.373698
Secretory granule lumen	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
syndrome	GeneRIF Biological Term Annotations	1.0	null
sepal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.968523
secretion	GeneRIF Biological Term Annotations	1.0	null
HIST1H2BM	Pathway Commons Protein-Protein Interactions	1.0	null
PMC3382229__F5	PFOCR Pathway Figure Associations 2023	1.0	null
BEN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.98527
gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052252
TLK1	Pathway Commons Protein-Protein Interactions	1.0	null
recognition	GeneRIF Biological Term Annotations	1.0	null
however	GeneRIF Biological Term Annotations	1.0	null
NR2C2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	60.7814
type	GeneRIF Biological Term Annotations	1.0	null
GATA2	JASPAR Predicted Transcription Factor Targets	1.0	null
ART1	Pathway Commons Protein-Protein Interactions	1.0	null
496100473_TCx_possible Alzheimer's disease_TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.38198
number	GeneRIF Biological Term Annotations	1.0	null
hepatic	GeneRIF Biological Term Annotations	1.0	null
prdm1_00000000_e9dot5_placenta_lof_mouse_gpl6887_gse39584	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	-1.0	-0.007474
JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.2694
PMC11758349-11130_2024_1262_MOESM1_ESM.docx-4-RFXDC2_RFX7	Rummagene Transcription Factor Associations 2026	1.0	null
mbl2	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.937
transcriptional	GeneRIF Biological Term Annotations	1.0	null
KPNB1	Pathway Commons Protein-Protein Interactions	1.0	null
S100A9 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.998
USF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.8083
irritation	GeneRIF Biological Term Annotations	1.0	null
physiological	GeneRIF Biological Term Annotations	1.0	null
processes	GeneRIF Biological Term Annotations	1.0	null
Extracellular matrix	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
OE19	CCLE Cell Line Gene CNV Profiles	1.0	2.58043
etiopathology	GeneRIF Biological Term Annotations	1.0	null
helper	GeneRIF Biological Term Annotations	1.0	null
Secretory vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
transferase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.049775
HCC70	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06149
periodontium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.34371
Golgi lumen	GO Cellular Component Annotations 2025	1.0	null
tumours	GeneRIF Biological Term Annotations	1.0	null
NR4A2::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.1879
SRY	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.5357
cell type benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.431144
ADH1A	Hub Proteins Protein-Protein Interactions	1.0	null
alphadefensin1alphadefensin3	GeneRIF Biological Term Annotations	1.0	null
TEF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.1148
KU812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.32305
extracellular space	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
largely	GeneRIF Biological Term Annotations	1.0	null
MDA-MB-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.32951
some	GeneRIF Biological Term Annotations	1.0	null
amniotic cavity	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.7711
Gingival fibroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.634
PMC11474056-pnas.2404841121.sd01.xlsx-Supplemental_Table_8_Fig1G-H-Supplemental_Table_8_Transcriptomic_overlap_between_LPS_and_Sepsis_and_or_Tuberculosis_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
central nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051441
cellular	GeneRIF Biological Term Annotations	1.0	null
where	GeneRIF Biological Term Annotations	1.0	null
biological	GeneRIF Biological Term Annotations	1.0	null
interactions	GeneRIF Biological Term Annotations	1.0	null
Gingival fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.269
TOV-112D	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.899783
cellular response to molecule of bacterial origin	GO Biological Process Annotations 2025	1.0	null
relationship	GeneRIF Biological Term Annotations	1.0	null
Antimicrobial peptides	Reactome Pathways 2024	1.0	null
suppress	GeneRIF Biological Term Annotations	1.0	null
Mucous gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.619
report	GeneRIF Biological Term Annotations	1.0	null
fetus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.103389
Thrombosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.146
Outer mucus layer	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.555
respiratory	GeneRIF Biological Term Annotations	1.0	null
Left atrium	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.264
Influenza	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.247
GSE201309_5_v_6_matrine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Crohn's disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.657
NFATC4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.7907
link	GeneRIF Biological Term Annotations	1.0	null
extracellular region	LOCATE Predicted Protein Localization Annotations	1.0	null
SW 1116	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.30901
Pericardial Effusion	CTD Gene-Disease Associations	1.0	1.02151
Hematopoietic system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.291
Cytoplasmic vesicle lumen	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
HCC2688	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35826
gabinding	GeneRIF Biological Term Annotations	1.0	null
496100373_PCx_no dementia_no TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.05413
entry	GeneRIF Biological Term Annotations	1.0	null
hsa-miR-3137	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
Nervous system disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.547
IKZF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.7467
significant	GeneRIF Biological Term Annotations	1.0	null
Intestinal Diseases	HuGE Navigator Gene-Phenotype Associations	1.0	null
mucin	GeneRIF Biological Term Annotations	1.0	null
YWHAQ	Pathway Commons Protein-Protein Interactions	1.0	null
Diabetes Mellitus	DisGeNET Gene-Disease Associations	1.0	null
PMC4594188__F1C	PFOCR Pathway Figure Associations 2024	1.0	null
Vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
NCI-H2804	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.915686
THP-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49384
AR-20517297-VCAP-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
TCF7L2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.3307
viscus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.413912
Azurophil granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.915
Integumentary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.327
pyrazinamide_mus musculus_gpl6246_gse48027	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
lower	GeneRIF Biological Term Annotations	1.0	null
NOD-like receptor signaling pathway	KEGG Pathways 2026	1.0	null
KDM1A	Pathway Commons Protein-Protein Interactions	1.0	null
hsa-miR-3670	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
monocytes	GeneRIF Biological Term Annotations	1.0	null
intracellular steroid hormone receptor signaling pathway	GO Biological Process Annotations 2023	1.0	null
contractions	GeneRIF Biological Term Annotations	1.0	null
predisposition	GeneRIF Biological Term Annotations	1.0	null
Nephritis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.281
golgi lumen	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
level	GeneRIF Biological Term Annotations	1.0	null
Connective tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.66
cytoplasmic vesicle part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
suggesting	GeneRIF Biological Term Annotations	1.0	null
Specific granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.203
into	GeneRIF Biological Term Annotations	1.0	null
distance	GeneRIF Biological Term Annotations	1.0	null
invasion	GeneRIF Biological Term Annotations	1.0	null
theta	GeneRIF Biological Term Annotations	1.0	null
retain	GeneRIF Biological Term Annotations	1.0	null
host	GeneRIF Biological Term Annotations	1.0	null
Kidney failure	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.033
DEFA3	Pathway Commons Protein-Protein Interactions	1.0	null
HEL	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33288
Myelocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.887
SNU-216	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.950974
BEN	CCLE Cell Line Gene CNV Profiles	-1.0	-1.64997
mainolfactoryepithelium.MOE.	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-1.03236
cytoplasm	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
caf	GeneRIF Biological Term Annotations	1.0	null
other organism membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.348725
Outer membrane-bounded periplasmic space	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.236
bladder	GTEx Tissue Gene Expression Profiles	-1.0	-0.869673
Arteriosclerotic cardiovascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.166
CREB3L2	Pathway Commons Protein-Protein Interactions	1.0	null
DYNC1I2	Pathway Commons Protein-Protein Interactions	1.0	null
MIAPACA2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.91537
effects	GeneRIF Biological Term Annotations	1.0	null
OUMS27	CCLE Cell Line Gene CNV Profiles	1.0	1.48286
rheumatoid	GeneRIF Biological Term Annotations	1.0	null
ZMYM3	Pathway Commons Protein-Protein Interactions	1.0	null
defensin	GeneRIF Biological Term Annotations	1.0	null
dental caries	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.460129
MYF6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.5182
liver	GeneRIF Biological Term Annotations	1.0	null
PMC11079244-Data_Sheet_2.XLSX-Supplementary_Table_2-Supplementary_Table_2_Genetic_instruments_of_plasma_for_MR_analysis_NR3C2	Rummagene Transcription Factor Associations 2026	1.0	null
hematopoietic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.670878
capability	GeneRIF Biological Term Annotations	1.0	null
Malignant Neoplasm	DisGeNET Gene-Disease Associations	1.0	null
Bacterial vaginosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.06
Paneth cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.568
GATA6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.487
motility	GeneRIF Biological Term Annotations	1.0	null
vivo	GeneRIF Biological Term Annotations	1.0	null
death	GeneRIF Biological Term Annotations	1.0	null
conserved	GeneRIF Biological Term Annotations	1.0	null
Dental plaque	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.998
following	GeneRIF Biological Term Annotations	1.0	null
granulocyte	GeneRIF Biological Term Annotations	1.0	null
NR2F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.5717
IGLC1	Pathway Commons Protein-Protein Interactions	1.0	null
acute	GeneRIF Biological Term Annotations	1.0	null
contains	GeneRIF Biological Term Annotations	1.0	null
there	GeneRIF Biological Term Annotations	1.0	null
Lupus erythematosus	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.389
IEC-18 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.853
HIST1H2BD	Pathway Commons Protein-Protein Interactions	1.0	null
innate	GeneRIF Biological Term Annotations	1.0	null
OCI-AML2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.925194
specifically	GeneRIF Biological Term Annotations	1.0	null
reactants	GeneRIF Biological Term Annotations	1.0	null
JUN::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.1586
PGR	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.8094
golgi apparatus part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
inflammatory	GeneRIF Biological Term Annotations	1.0	null
secretory granule	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
integument	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.434523
dosedependent	GeneRIF Biological Term Annotations	1.0	null
defense response to bacterium	GO Biological Process Annotations 2025	1.0	null
IGHG1	Pathway Commons Protein-Protein Interactions	1.0	null
PMC11257892-Table_1.xlsx-S2-Supplementary_Table_S2_All_results_of_the_preliminary_MR_analysis_NR3C2	Rummagene Transcription Factor Associations 2026	1.0	null
POLR2A	ENCODE Transcription Factor Targets	1.0	null
bone marrow	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.065501
Vaginal fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.77
hsa-miR-1255a	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
MCAS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.98527
fully	GeneRIF Biological Term Annotations	1.0	null
authors	GeneRIF Biological Term Annotations	1.0	null
throat	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.066344
embryonic stem feeder layer	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-1.45868
T cell chemotaxis	GO Biological Process Annotations 2023	1.0	null
cruzi	GeneRIF Biological Term Annotations	1.0	null
NR1H4::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.9356
exotoxin	GeneRIF Biological Term Annotations	1.0	null
Brain - Anterior cingulate cortex (BA24)	GTEx Tissue Gene Expression Profiles 2023	1.0	7.16811
Acute Periodontitis	DisGeNET Gene-Disease Associations	1.0	null
hd5	GeneRIF Biological Term Annotations	1.0	null
tata	GeneRIF Biological Term Annotations	1.0	null
Transcriptional misregulation in cancer	KEGG Pathways 2026	1.0	null
gastric	GeneRIF Biological Term Annotations	1.0	null
peptides	GeneRIF Biological Term Annotations	1.0	null
virion part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.218212
asthma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.161331
surface	GeneRIF Biological Term Annotations	1.0	null
intestinal	GeneRIF Biological Term Annotations	1.0	null
ACHN	CCLE Cell Line Gene CNV Profiles	-1.0	-3.05155
salivarygland_6c	HPA Tissue Sample Gene Expression Profiles	1.0	0.840512
other organism part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.348725
differentially	GeneRIF Biological Term Annotations	1.0	null
HDAC2	Pathway Commons Protein-Protein Interactions	1.0	null
family	GeneRIF Biological Term Annotations	1.0	null
Tumor Cell Invasion	DisGeNET Gene-Phenotype Associations	1.0	null
Chronic obstructive pulmonary disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.0
dimerization	GeneRIF Biological Term Annotations	1.0	null
cytoplasmic membrane-bounded vesicle lumen	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
mRNA_MSC_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	-1.0	null
destruction	GeneRIF Biological Term Annotations	1.0	null
cell periphery	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.17141
Mucous cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.629
496100516_FWM_probable Alzheimer's disease_TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.03819
disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.485125
HIST1H2BK	Pathway Commons Protein-Protein Interactions	1.0	null
NR6A1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.6608
replacing	GeneRIF Biological Term Annotations	1.0	null
septum (resp epith)	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	0.997769
ribosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.187646
membrane	GeneRIF Biological Term Annotations	1.0	null
HIST1H2AI	Pathway Commons Protein-Protein Interactions	1.0	null
Arteriosclerosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.159
bone marrow	HPA Tissue Gene Expression Profiles	1.0	2.24804
leukemia	GeneRIF Biological Term Annotations	1.0	null
PMC6225799-annrheumdis-2018-213524supp003.xlsx-Activated-state-LPS-Gene_Symbol_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
BARX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.1305
16140871-SuppTable7	GeneSigDB Published Gene Signatures	1.0	null
same	GeneRIF Biological Term Annotations	1.0	null
membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.360133
hypothesis	GeneRIF Biological Term Annotations	1.0	null
involves	GeneRIF Biological Term Annotations	1.0	null
Endocrine gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
cellular response to lipopolysaccharide	GO Biological Process Annotations 2025	1.0	null
intracellular organelle lumen	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
mucosal immune response	GO Biological Process Annotations 2025	1.0	null
polymorphisms	GeneRIF Biological Term Annotations	1.0	null
HAND2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.8215
TRIM28-17542650-NTERA2-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
Nasal lavage fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.662
individuals	GeneRIF Biological Term Annotations	1.0	null
gly	GeneRIF Biological Term Annotations	1.0	null
Polymorphonuclear leukocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.915
Adenolymphoma	DisGeNET Gene-Disease Associations	1.0	null
fibromas	GeneRIF Biological Term Annotations	1.0	null
hsa-miR-298	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
mediates	GeneRIF Biological Term Annotations	1.0	null
Neutrophil	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.248
KMS-12-PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29967
whole body	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	1.53602
TP53BP1	Pathway Commons Protein-Protein Interactions	1.0	null
GSE76425_0_v_5_lenalidomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.042534
EFM-19	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35826
endoplasmic reticulum chaperone complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.324951
absence	GeneRIF Biological Term Annotations	1.0	null
496100409_FWM_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.79603
Azurophil granule	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
diabetic	GeneRIF Biological Term Annotations	1.0	null
electrostatic	GeneRIF Biological Term Annotations	1.0	null
MOB4	Pathway Commons Protein-Protein Interactions	1.0	null
Coronary Arteriosclerosis	DisGeNET Gene-Disease Associations	1.0	null
L-363	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.99615
UBC	Pathway Commons Protein-Protein Interactions	1.0	null
chronic	GeneRIF Biological Term Annotations	1.0	null
Extracellular non-membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.427
intracellular organelle lumen	GO Cellular Component Annotations 2023	1.0	null
lung	GeneRIF Biological Term Annotations	1.0	null
USP7	Hub Proteins Protein-Protein Interactions	1.0	null
Extracellular membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
PMC6604319-13072_2019_278_MOESM3_ESM.xlsx-CEM_ect_TET2_DEGs_DMRs_hDMRs-Unnamed_5_TET2	Rummagene Transcription Factor Associations 2026	1.0	null
brain	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051485
TRPS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.295
salivary	GeneRIF Biological Term Annotations	1.0	null
mbl	GeneRIF Biological Term Annotations	1.0	null
GRHL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.891
enhances	GeneRIF Biological Term Annotations	1.0	null
differentiation	GeneRIF Biological Term Annotations	1.0	null
intestinal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.047462
palsy	GeneRIF Biological Term Annotations	1.0	null
H322T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07988
POU6F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.3619
PPP2R1A	Pathway Commons Protein-Protein Interactions	1.0	null
Cervicovaginal fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.765
constraints	GeneRIF Biological Term Annotations	1.0	null
PMC6851586__F1	PFOCR Pathway Figure Associations 2024	1.0	null
recruit	GeneRIF Biological Term Annotations	1.0	null
health	GeneRIF Biological Term Annotations	1.0	null
496100622_HIP_no dementia_no TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.74567
intracellular	GeneRIF Biological Term Annotations	1.0	null
other organism	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.327581
adpribosylation	GeneRIF Biological Term Annotations	1.0	null
phase	GeneRIF Biological Term Annotations	1.0	null
vitro	GeneRIF Biological Term Annotations	1.0	null
likely	GeneRIF Biological Term Annotations	1.0	null
PPARD	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.334
Chromium levels	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.6
PMC11982601-IMM-175-84-s005.xlsx-Fig5D_LPS-Innate_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
cytoplasmic part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
vascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.044498
CTSG	Pathway Commons Protein-Protein Interactions	1.0	null
observed	GeneRIF Biological Term Annotations	1.0	null
stool	GeneRIF Biological Term Annotations	1.0	null
PMC10773028-40364_2023_552_MOESM1_ESM.xlsx-Variants_sheet-TFT_TBXT	Rummagene Transcription Factor Associations 2026	1.0	null
clostridial	GeneRIF Biological Term Annotations	1.0	null
SPAG5	Pathway Commons Protein-Protein Interactions	1.0	null
prevalent	GeneRIF Biological Term Annotations	1.0	null
Colitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.547
KMS27	CCLE Cell Line Gene CNV Profiles	1.0	1.57667
cytosolic part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.110646
risk	GeneRIF Biological Term Annotations	1.0	null
HCC2935	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.950974
APUD cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.526
intestinal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.047669
first	GeneRIF Biological Term Annotations	1.0	null
12873988-Table1	GeneSigDB Published Gene Signatures	1.0	null
IRF9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.5158
sucrase-isomaltase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.238
behcet's disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.510728
Jejunal epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.781
related	GeneRIF Biological Term Annotations	1.0	null
line	GeneRIF Biological Term Annotations	1.0	null
ZNF317	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.4135
binds	GeneRIF Biological Term Annotations	1.0	null
adpribose	GeneRIF Biological Term Annotations	1.0	null
vasculitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.11806
invariant	GeneRIF Biological Term Annotations	1.0	null
nmr	GeneRIF Biological Term Annotations	1.0	null
periodontitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.413527
adenohypophysis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.154984
bacterial	GeneRIF Biological Term Annotations	1.0	null
TGIF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.0899
sample	GeneRIF Biological Term Annotations	1.0	null
lectin	GeneRIF Biological Term Annotations	1.0	null
ACCMESO1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.66025
membranes	GeneRIF Biological Term Annotations	1.0	null
Secretory granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.689
organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
cellular_component	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.36204
H2AFJ	Pathway Commons Protein-Protein Interactions	1.0	null
ASPC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.899783
Left ventricle	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.089
hematopoietic system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
antimicrobial humoral immune response mediated by antimicrobial peptide	GO Biological Process Annotations 2023	1.0	null
pneumococcal	GeneRIF Biological Term Annotations	1.0	null
cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.039298
Sepsis	HuGE Navigator Gene-Phenotype Associations	1.0	null
Beta defensin/Neutrophil defensin	InterPro Predicted Protein Domain Annotations	1.0	null
inflorescence	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.167099
vacuole	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
inhibited	GeneRIF Biological Term Annotations	1.0	null
colorectal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.071204
penetration	GeneRIF Biological Term Annotations	1.0	null
DV-90	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49384
HIST2H2AA4	Pathway Commons Protein-Protein Interactions	1.0	null
PMC12518476-10067_2025_7574_MOESM8_ESM.xlsx-Sheet1-Up_regulated_DEGs_of_KD_AR	Rummagene Transcription Factor Associations 2026	1.0	null
Mammalian defensins	InterPro Predicted Protein Domain Annotations	1.0	null
organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.048352
fatty	GeneRIF Biological Term Annotations	1.0	null
plus	GeneRIF Biological Term Annotations	1.0	null
flower	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.173551
neck	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062775
corresponding	GeneRIF Biological Term Annotations	1.0	null
inflammation	GeneRIF Biological Term Annotations	1.0	null
perianth	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.644479
musculoskeletal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.046496
cell part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.045827
killed	GeneRIF Biological Term Annotations	1.0	null
viral infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.061678
JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.853
critical	GeneRIF Biological Term Annotations	1.0	null
numbers	GeneRIF Biological Term Annotations	1.0	null
NCI-H889	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.66998
Musculoskeletal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.642
G111	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.56969
dermal dendritic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.4576
responses	GeneRIF Biological Term Annotations	1.0	null
KYM1	CCLE Cell Line Gene CNV Profiles	1.0	1.59051
hsa-miR-3122	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
IRF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.9478
OCUM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.962118
OCI-M2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.31696
obstructive lung disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.279011
pseudomonas	GeneRIF Biological Term Annotations	1.0	null
among	GeneRIF Biological Term Annotations	1.0	null
DBP	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.7348
leading	GeneRIF Biological Term Annotations	1.0	null
petal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.70108
Skeletal system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
HIST1H2BN	Pathway Commons Protein-Protein Interactions	1.0	null
AMBRA1	Pathway Commons Protein-Protein Interactions	1.0	null
disruption of plasma membrane integrity in another organism	GO Biological Process Annotations 2025	1.0	null
KURAMOCHI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.30945
cardiovascular system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.04258
ZNF354A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	71.2437
candidiasis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.28294
SNU-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.853269
migration	GeneRIF Biological Term Annotations	1.0	null
influenza	GeneRIF Biological Term Annotations	1.0	null
adenomas	GeneRIF Biological Term Annotations	1.0	null
496100440_FWM_possible Alzheimer's disease_no TBI_95-99_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.08248
membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
innate immune response in mucosa	GO Biological Process Annotations 2023	1.0	null
mitogenactivated	GeneRIF Biological Term Annotations	1.0	null
Viscus	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Tertiary granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.873
stability	GeneRIF Biological Term Annotations	1.0	null
Autosomal genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.231
bonemarrow_6a	HPA Tissue Sample Gene Expression Profiles	1.0	1.69967
pu1	GeneRIF Biological Term Annotations	1.0	null
STRIP1	Pathway Commons Protein-Protein Interactions	1.0	null
intracellular part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
lymphoid	GeneRIF Biological Term Annotations	1.0	null
CDX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.0605
antibacterial humoral response	GO Biological Process Annotations 2025	1.0	null
correlate	GeneRIF Biological Term Annotations	1.0	null
Limited scleroderma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.128
PMC8664902__F5	PFOCR Pathway Figure Associations 2024	1.0	null
reduced	GeneRIF Biological Term Annotations	1.0	null
innate immune response in mucosa	GO Biological Process Annotations 2025	1.0	null
betadefensin1	GeneRIF Biological Term Annotations	1.0	null
hematopoietic system	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	1.53602
recruitment	GeneRIF Biological Term Annotations	1.0	null
LOX-IMVI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0452
Mifepristone	CTD Gene-Chemical Interactions	1.0	null
Central nervous system disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.547
Tear	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.015
NR4A2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.5261
CCT4	Hub Proteins Protein-Protein Interactions	1.0	null
Tuberculosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.265
fetal	GeneRIF Biological Term Annotations	1.0	null
glutamine	GeneRIF Biological Term Annotations	1.0	null
population	GeneRIF Biological Term Annotations	1.0	null
Polymorphonuclear neutrophil	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.94
antimicrobial humoral response	GO Biological Process Annotations 2025	1.0	null
M-1	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-1.29277
HT29	CCLE Cell Line Gene CNV Profiles	-1.0	-1.45308
TGIF2LX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.7018
defense response to symbiont	GO Biological Process Annotations 2025	1.0	null
Golgi lumen	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
496100452_HIP_possible Alzheimer's disease_no TBI_95-99_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.29029
GAPDH	Pathway Commons Protein-Protein Interactions	1.0	null
Microspore	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.551
GSE234289_5_v_2_rfx6_human	RummaGEO Gene Perturbation Signatures	1.0	null
PK59	CCLE Cell Line Gene CNV Profiles	1.0	1.56244
lifethreatening	GeneRIF Biological Term Annotations	1.0	null
RCOR3	Pathway Commons Protein-Protein Interactions	1.0	null
pars intermedia	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.335968
NFIC	JASPAR Predicted Transcription Factor Targets	1.0	null
BRCA1	Hub Proteins Protein-Protein Interactions	1.0	null
periodontal	GeneRIF Biological Term Annotations	1.0	null
Atrium	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.333
increases	GeneRIF Biological Term Annotations	1.0	null
mRNA_SETDB1_19884255	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	-1.0	null
overexpressed	GeneRIF Biological Term Annotations	1.0	null
ZNF784	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.416
infection	GeneRIF Biological Term Annotations	1.0	null
mesenteric lymph node	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.212761
G61	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.32305
Liver	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Cytoplasmic vesicle lumen	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.868
graft-versus-host disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.034
megakaryocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.170743
arginine	GeneRIF Biological Term Annotations	1.0	null
NCI-H1092	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.3135
OCI-AML3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49384
virus	GeneRIF Biological Term Annotations	1.0	null
FAM172A	Pathway Commons Protein-Protein Interactions	1.0	null
vesicle lumen	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Kidney disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.359
SREBF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.1955
against	GeneRIF Biological Term Annotations	1.0	null
spleen	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
aeruginosa	GeneRIF Biological Term Annotations	1.0	null
MHC class II protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.766
cytotoxins	GeneRIF Biological Term Annotations	1.0	null
blood	GeneRIF Biological Term Annotations	1.0	null
Pleomorphic adenoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.057
Adenoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.054
SKP1	Pathway Commons Protein-Protein Interactions	1.0	null
496100609_TCx_no dementia_no TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.21392
MCAS	CCLE Cell Line Gene CNV Profiles	-1.0	-1.39879
PMC4333457__F6	PFOCR Pathway Figure Associations 2023	1.0	null
PMC8530322-pone.0258316.s002.xlsx-GG_778_no-AA_778_no-Symbol_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
membrane-enclosed lumen	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
gynoecium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.221989
ZMYM2	Pathway Commons Protein-Protein Interactions	1.0	null
Alzheimer Disease	DisGeNET Gene-Disease Associations	1.0	null
KPNA4	Pathway Commons Protein-Protein Interactions	1.0	null
Meningitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.043
actions	GeneRIF Biological Term Annotations	1.0	null
Small intestine epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.525
Crohn Disease	DisGeNET Gene-Disease Associations	1.0	null
functions	GeneRIF Biological Term Annotations	1.0	null
cellular_component	LOCATE Predicted Protein Localization Annotations	1.0	null
serglycin	GeneRIF Biological Term Annotations	1.0	null
SK-MM-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.89912
SPI1_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.711
pulmonary	GeneRIF Biological Term Annotations	1.0	null
involvement	GeneRIF Biological Term Annotations	1.0	null
synovial	GeneRIF Biological Term Annotations	1.0	null
SNU-475	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.53655
Organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.403
pore	GeneRIF Biological Term Annotations	1.0	null
Coronavirus infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.624
C32	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.934947
SW 1417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.52631
process	GeneRIF Biological Term Annotations	1.0	null
HIST2H2AC	Pathway Commons Protein-Protein Interactions	1.0	null
african	GeneRIF Biological Term Annotations	1.0	null
Gingivitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.245
fibrosis	GeneRIF Biological Term Annotations	1.0	null
OV-90	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.880955
clinical	GeneRIF Biological Term Annotations	1.0	null
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.58101
disease by infectious agent	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.048445
mRNA_ESX1_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	-1.0	null
lymph node	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.066682
Neutrophilic Asthma	DisGeNET Gene-Disease Associations	1.0	null
Parasitic infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.115
cellular response to lipid	GO Biological Process Annotations 2023	1.0	null
FOXC1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.6838
WSU-DLCL2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49384
C1QB	Pathway Commons Protein-Protein Interactions	1.0	null
increase	GeneRIF Biological Term Annotations	1.0	null
pattern	GeneRIF Biological Term Annotations	1.0	null
sirna	GeneRIF Biological Term Annotations	1.0	null
support	GeneRIF Biological Term Annotations	1.0	null
endoplasmic reticulum part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.052182
Hypertension	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.239
tooth disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.498085
blood platelet	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.413912
different	GeneRIF Biological Term Annotations	1.0	null
block	GeneRIF Biological Term Annotations	1.0	null
Inflammatory bowel disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.773
Golgi apparatus	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
SIX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.3737
requisite	GeneRIF Biological Term Annotations	1.0	null
idiopathic pulmonary fibrosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.275445
OVCA 432	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.41787
FLI1::DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.5534
sensitivity	GeneRIF Biological Term Annotations	1.0	null
Glomerulonephritis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.216
DYNC1LI2	Pathway Commons Protein-Protein Interactions	1.0	null
chorioamnionitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.822488
MOLM6	CCLE Cell Line Gene CNV Profiles	1.0	2.45031
organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.039347
Small intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.1
elevated	GeneRIF Biological Term Annotations	1.0	null
hsa-miR-3910	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
PMC5105166-ncomms13331-s5.xlsx-Sheet1-Supplementary_Data_4_Gene_expression_signature_of_MEF2D-rearranged_cases_stranded_data_only_MEF2D	Rummagene Transcription Factor Associations 2026	1.0	null
skin	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055882
active	GeneRIF Biological Term Annotations	1.0	null
connective tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.063766
omental	GeneRIF Biological Term Annotations	1.0	null
Dense core granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.819
low	GeneRIF Biological Term Annotations	1.0	null
azurophil granule lumen	GO Cellular Component Annotations 2023	1.0	null
causes	GeneRIF Biological Term Annotations	1.0	null
defense response to protozoan	GO Biological Process Annotations 2025	1.0	null
response to lipopolysaccharide	GO Biological Process Annotations 2023	1.0	null
Severe COVID-19	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.145
induces	GeneRIF Biological Term Annotations	1.0	null
Septicemia	DisGeNET Gene-Disease Associations	1.0	null
SUPM2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.5534
nuclear receptor-mediated steroid hormone signaling pathway	GO Biological Process Annotations 2025	1.0	null
GSE205163,GSE205164_2_v_8_znf808_human	RummaGEO Gene Perturbation Signatures	1.0	null
infection	GAD High Level Gene-Disease Associations	1.0	0.293278
Immune System	Reactome Pathways 2014	1.0	null
stringent	GeneRIF Biological Term Annotations	1.0	null
encapsulated	GeneRIF Biological Term Annotations	1.0	null
Fibroma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.157
Promyelocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.171
HS 852.T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.86916
loop	GeneRIF Biological Term Annotations	1.0	null
GSE196117_1_v_7_clarithromycin_human	RummaGEO Drug Perturbation Signatures	1.0	null
PAX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.1256
Urinary system disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	2.027
commonly	GeneRIF Biological Term Annotations	1.0	null
west nile fever	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.43288
PMC9396374-Table_4.XLSX-AR_related_target_genes-gene_symbol_AR	Rummagene Transcription Factor Associations 2026	1.0	null
intracellular part	LOCATE Curated Protein Localization Annotations	1.0	null
cerebellum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.069874
BICR 22	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.89912
Alpha-defensins	Reactome Pathways 2024	1.0	null
496100359_PCx_no dementia_no TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.96072
MEIS3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.6094
LYZ	Pathway Commons Protein-Protein Interactions	1.0	null
BT-20	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20225
PMC11485038-384_2024_4744_MOESM1_ESM.xlsx-Sheet3-Supplementary_Table3_Unique_leader_cis-pQTLs_for_MR_analysis_NR3C2	Rummagene Transcription Factor Associations 2026	1.0	null
Nephritis	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	2.027
Gut epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.222
affinity	GeneRIF Biological Term Annotations	1.0	null
GPHN	Pathway Commons Protein-Protein Interactions	1.0	null
Psmb	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.695
apoptosis	GeneRIF Biological Term Annotations	1.0	null
situ	GeneRIF Biological Term Annotations	1.0	null
Kernicterus	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.226
synostosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.283655
arthritis	GeneRIF Biological Term Annotations	1.0	null
mouth	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.230931
HCC2814	CCLE Cell Line Gene CNV Profiles	-1.0	-1.35561
DYNC1LI1	Pathway Commons Protein-Protein Interactions	1.0	null
STRN	Pathway Commons Protein-Protein Interactions	1.0	null
americans	GeneRIF Biological Term Annotations	1.0	null
AGGF1	Pathway Commons Protein-Protein Interactions	1.0	null
PMC5069771__F2	PFOCR Pathway Figure Associations 2023	1.0	null
folding	GeneRIF Biological Term Annotations	1.0	null
TROVE2	Hub Proteins Protein-Protein Interactions	1.0	null
torsion	GeneRIF Biological Term Annotations	1.0	null
etamediated	GeneRIF Biological Term Annotations	1.0	null
embryonic structure	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058491
Glucose metabolism disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.562
MCM2	Hub Proteins Protein-Protein Interactions	1.0	null
conditions	GeneRIF Biological Term Annotations	1.0	null
transfected	GeneRIF Biological Term Annotations	1.0	null
organism form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057031
golgi apparatus	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
nih 3T3	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-1.34751
FOXP1	ChEA Transcription Factor Targets	1.0	null
tissues, cell types and enzyme sources	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	1.53602
Cytoplasmic vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
determined	GeneRIF Biological Term Annotations	1.0	null
Enterocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.462
NCIH2342	CCLE Cell Line Gene CNV Profiles	-1.0	-1.91893
capabilities	GeneRIF Biological Term Annotations	1.0	null
other	GeneRIF Biological Term Annotations	1.0	null
alphadefensin1	GeneRIF Biological Term Annotations	1.0	null
mRNA_EOMES_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	-1.0	null
Ileitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.014
Necrosis	CTD Gene-Disease Associations	1.0	1.10388
ZNF766	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.4066
provirus	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.157397
Cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.49
attacks	GeneRIF Biological Term Annotations	1.0	null
Vascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.64
subsequent	GeneRIF Biological Term Annotations	1.0	null
bells	GeneRIF Biological Term Annotations	1.0	null
20078854-TableS6a	GeneSigDB Published Gene Signatures	1.0	null
assay	GeneRIF Biological Term Annotations	1.0	null
KNSTRN	Pathway Commons Protein-Protein Interactions	1.0	null
relative	GeneRIF Biological Term Annotations	1.0	null
Parasitic protozoa infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.128
HS 940.T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.39858
Goblet cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.641
extracellular vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.057922
OVCAR8	CCLE Cell Line Gene CNV Profiles	-1.0	-2.36558
glucosylating	GeneRIF Biological Term Annotations	1.0	null
beta2	GeneRIF Biological Term Annotations	1.0	null
NCI-H209	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49384
adds	GeneRIF Biological Term Annotations	1.0	null
reduction	GeneRIF Biological Term Annotations	1.0	null
generated	GeneRIF Biological Term Annotations	1.0	null
ZSCAN16	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.9052
GSE205163,GSE205164_2_v_6_znf808_human	RummaGEO Gene Perturbation Signatures	1.0	null
fluid	GeneRIF Biological Term Annotations	1.0	null
Myocardial infarction	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.018
frog	GeneRIF Biological Term Annotations	1.0	null
Coronary Artery Disease	DisGeNET Gene-Disease Associations	1.0	null
demonstrate	GeneRIF Biological Term Annotations	1.0	null
antimicrobial humoral immune response mediated by antimicrobial peptide	GO Biological Process Annotations 2025	1.0	null
intracellular organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.04528
Ileal mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.036
nucleoplasm part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.055813
ribosylation	GeneRIF Biological Term Annotations	1.0	null
neovascularizaiton	GeneRIF Biological Term Annotations	1.0	null
RCOR1	Pathway Commons Protein-Protein Interactions	1.0	null
NCI-H345	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.32951
Crypt	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.322
Respiratory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.62
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.811473
spleen	GTEx Tissue Gene Expression Profiles	1.0	1.16473
Secretory granule lumen	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.794
MORCPR	CCLE Cell Line Gene CNV Profiles	-1.0	-1.73713
PFN1	Pathway Commons Protein-Protein Interactions	1.0	null
hsa-miR-4433	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
non-membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.054108
close	GeneRIF Biological Term Annotations	1.0	null
Central nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.329
suggests	GeneRIF Biological Term Annotations	1.0	null
Reservosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.519
Bone disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.507
implications	GeneRIF Biological Term Annotations	1.0	null
F-9 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.524
PDCD10	Pathway Commons Protein-Protein Interactions	1.0	null
Cerebrovascular disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.547
Bronchial disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.326
vacuolar lumen	GO Cellular Component Annotations 2025	1.0	null
showed	GeneRIF Biological Term Annotations	1.0	null
Innate Immune System	Reactome Pathways 2014	1.0	null
Bone marrow	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
Bone inflammation disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.537
white	GeneRIF Biological Term Annotations	1.0	null
il8	GeneRIF Biological Term Annotations	1.0	null
SREBF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.3801
hsa-miR-1255b	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
pancreas	HPA Tissue Gene Expression Profiles	-1.0	-1.10599
Enteroendocrine cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.527
Primary lysosome	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
NCI-H1703	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12954
defense response to Gram-negative bacterium	GO Biological Process Annotations 2023	1.0	null
T cell chemotaxis	GO Biological Process Annotations 2025	1.0	null
smallintestine	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	2.09859
four	GeneRIF Biological Term Annotations	1.0	null
potentially	GeneRIF Biological Term Annotations	1.0	null
ribosomal subunit	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.266774
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.590948
rapid	GeneRIF Biological Term Annotations	1.0	null
COVID-19	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.605
Lytic vacuole	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
bonemarrow_6c	HPA Tissue Sample Gene Expression Profiles	1.0	1.70376
difficile	GeneRIF Biological Term Annotations	1.0	null
defense response to Gram-positive bacterium	GO Biological Process Annotations 2025	1.0	null
beta	GeneRIF Biological Term Annotations	1.0	null
HCC12	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49384
PMC3382229__F5	PFOCR Pathway Figure Associations 2024	1.0	null
organelle lumen	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
craniosynostosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.391885
Trypomastigote	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.436
amnion	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.216528
Leukemia	CTD Gene-Disease Associations	1.0	1.05972
bowel	GeneRIF Biological Term Annotations	1.0	null
Extracellular space	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
CIZ1	Pathway Commons Protein-Protein Interactions	1.0	null
granulocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.952116
cleavage	GeneRIF Biological Term Annotations	1.0	null
trypomastigotes	GeneRIF Biological Term Annotations	1.0	null
Acquired metabolic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.214
embryonic stem no feeder	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-1.66827
event	GeneRIF Biological Term Annotations	1.0	null
markers	GeneRIF Biological Term Annotations	1.0	null
SNU-449	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.899783
conjunctiva	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.214202
strains	GeneRIF Biological Term Annotations	1.0	null
test	GeneRIF Biological Term Annotations	1.0	null
amniotic fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.440274
TFAP4::FLI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.6555
A4FUK	CCLE Cell Line Gene CNV Profiles	1.0	1.36582
extracellular region part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.064919
eyelid	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.156123
Jejunum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.359
GSK3B	Pathway Commons Protein-Protein Interactions	1.0	null
PMC12540209-12672_2025_3746_MOESM1_ESM.xlsx-S1_MR_result-exposure_NR3C2	Rummagene Transcription Factor Associations 2026	1.0	null
SU-DHL-6	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.934386
mRNA_ASCL2_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	-1.0	null
proportions	GeneRIF Biological Term Annotations	1.0	null
prosthetic	GeneRIF Biological Term Annotations	1.0	null
Arthritis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.535
PMC9396374-Table_5.XLSX-Table_S5-AR_genes_AR	Rummagene Transcription Factor Associations 2026	1.0	null
Grm	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.579
ELANE	Pathway Commons Protein-Protein Interactions	1.0	null
Lung disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.414
rtd1	GeneRIF Biological Term Annotations	1.0	null
spleen	HPA Tissue Gene Expression Profiles	1.0	0.902524
Gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
STAT1	Pathway Commons Protein-Protein Interactions	1.0	null
hiv1infected	GeneRIF Biological Term Annotations	1.0	null
hbd2	GeneRIF Biological Term Annotations	1.0	null