association	dataset	threshold value	standardized value
Psmb	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.536
Tertiary granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.645
hsa-miR-3137	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
macromolecular complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.046959
connective tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.063918
SK-MM-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.89912
IM-9 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.604
RUNX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.6913
Respiratory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.941
gastroduodenal	GeneRIF Biological Term Annotations	1.0	null
proteolysis	GeneRIF Biological Term Annotations	1.0	null
Lung adenocarcinoma_LUAD_TCGA-55-6978-11A-01R-1949-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ACHN	CCLE Cell Line Gene CNV Profiles	-1.0	-3.05155
Sweat gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.842
496100474_FWM_possible Alzheimer's disease_TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.85745
golgi lumen	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Lung squamous cell carcinoma_LUSC_TCGA-22-5472-11A-11R-1635-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CR-6474-01A-11R-1873-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
membrane-enclosed lumen	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
colorectum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.259929
ribosomal subunit	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.280716
TYK-NU.CP-R	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.962118
apud cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.433374
TGIF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.362
Dermatitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.187
host	GeneRIF Biological Term Annotations	1.0	null
MV-4-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01826
adult stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062617
Disease by infectious agent	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.217
Disease of mental health	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.149
Golgi cis cisterna	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.031
disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.040763
Lamina propria	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.332
SUPM2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.5534
trunk	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052061
Colitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.63
HT-29/219 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.602
Pancreatic adenocarcinoma_PAAD_TCGA-H6-A45N-11A-12R-A26U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hematopoietic system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.734735
Sublingual gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.267
Prostate adenocarcinoma_PRAD_TCGA-EJ-7328-01A-31R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Cervical mucus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.308
local	GeneRIF Biological Term Annotations	1.0	null
Upper respiratory tract disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.058
Oral mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.537
Golgi cisterna membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.175
GSE196117_1_v_7_clarithromycin_human	RummaGEO Drug Perturbation Signatures	1.0	null
LOX-IMVI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0452
CX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.63629
endometriosis	DISEASES Experimental Gene-Disease Association Evidence Scores	1.0	0.345945
Bladder Urothelial Carcinoma_BLCA_TCGA-GC-A6I3-11A-11R-A31N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Myocardial infarction	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.087
496100504_TCx_probable Alzheimer's disease_TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.54642
Autosomal recessive disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.404
hsa-miR-1255a	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
KMS21BM	CCLE Cell Line Gene CNV Profiles	1.0	1.871
CLOCK	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.2493
Sarcoma_SARC_TCGA-WK-A8XY-01A-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
496100500_PCx_probable Alzheimer's disease_TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.30973
SNU-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.853269
large intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.28213
NCI-H889	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.66998
Arteriosclerotic cardiovascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.339
Uterine epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.772
PGR	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.8094
Rectum adenocarcinoma_READ_TCGA-EI-6507-01A-11R-1736-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
colon	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.337808
JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.2694
Appendicitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.377
USF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.9116
colorectal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.071204
Nephritis	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	2.027
Colonic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.176
HCC366	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20186
separase-securin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.108
large ribosomal subunit	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.532078
Autosomal genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.473
Rectum adenocarcinoma_READ_TCGA-CL-5918-01A-11R-1660-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-FG-5965-01B-11R-1896-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CBF3 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.736
Cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.463
mouth disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.460883
Meiotic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.905
Heart disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.315
peritoneum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.126947
GRHL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.891
Atherosclerosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.339
Gastrointestinal system benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.061
Placental membrane	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.736
hematopoietic stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.069057
Spindle pole body	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.419
AR-27270436-LNCAP-HUMAN-PROSTATE-CARCINOMA	ChEA Transcription Factor Targets 2022	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-4852-01A-01R-1503-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Labial gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.518
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-EX-A3L1-01A-11R-A32Y-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
organelle part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
extracellular vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.057922
flower	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.174304
Cervicovaginal fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.546
bronchopneumonia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.647743
tooth disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.498085
Gastrointestinal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.449
peripheral blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.303559
Sputum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.233
Organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.676
PKNOX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.447
hematopoietic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.687184
external encapsulating structure	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.449643
MIAPACA2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.91537
bsc1	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.576
petal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.717472
Diarrhea	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.17
NCI-H2198	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.915686
Enterocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.485
Ciliary membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.892
affected	GeneRIF Biological Term Annotations	1.0	null
organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
Respiratory epithelium cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.22
Connective tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.872
Antiphospholipid syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.066
Lung adenocarcinoma_LUAD_TCGA-38-4625-11A-01R-1758-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
WSU-DLCL2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49384
COVID-19	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.764
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.590948
membrane-bounded vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
Osteogenesis imperfecta type 6	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.22
HOXB5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.8903
Choriodecidua	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.046
MEIS3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.5098
PMC5105166-ncomms13331-s5.xlsx-Sheet1-Supplementary_Data_4_Gene_expression_signature_of_MEF2D-rearranged_cases_stranded_data_only_MEF2D	Rummagene Transcription Factor Associations 2026	1.0	null
amnion	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.225395
Parotid gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.28
golgi apparatus	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
rituximab_homo sapiens_gpl570_gds3829	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
JUN::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.1586
Lytic vacuole	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
MYF6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.5182
Ileum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.649
Gingival epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.321
colon cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.185612
Extracellular organelle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
synostosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.283655
NR6A1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.6608
Hematologic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.251
Paneth cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.642
496100426_PCx_no dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.54138
Pheochromocytoma and Paraganglioma_PCPG_TCGA-W2-A7HC-01A-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RXRG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.1243
Periodontium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.54
SOX8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.9889
susceptibility	GeneRIF Biological Term Annotations	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-BT-A3PK-01A-21R-A220-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Crypt	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.397
496100609_TCx_no dementia_no TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.19534
cytoplasm	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
lytic vacuole	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Amnion epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.932
intracellular non-membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.049189
Inflammatory bowel disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.852
NCI-H1092	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.3135
Overnutrition	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.302
DBP	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.7348
alphadefensin	GeneRIF Biological Term Annotations	1.0	null
Subrhabdomeral cisterna	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.558
mouth	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.242363
BCL11A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.2488
OCI-AML3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49384
Cell wall	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.976
Viral infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.015
lysosome	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
iga glomerulonephritis	DISEASES Experimental Gene-Disease Association Evidence Scores	1.0	0.995303
dysostosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.261245
Asthma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.404
Influenza	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.66
Meningitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.179
HCC1171	CCLE Cell Line Gene CNV Profiles	-1.0	-1.41573
connective tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.050038
Atopic dermatitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.108
Autoimmune disease of cardiovascular system	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.32
Head and Neck squamous cell carcinoma_HNSC_TCGA-BA-A6DA-01A-31R-A31N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Tear gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.718
Lung adenocarcinoma_LUAD_TCGA-55-1592-01A-01R-0946-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
gynoecium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.232317
GATA3	JASPAR Predicted Transcription Factor Targets	1.0	null
sepal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.985859
SIHA	CCLE Cell Line Gene CNV Profiles	-1.0	-2.042
Osteomyelitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.152
other organism	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.342285
Secretory cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.483
RXRB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.2186
Ulcerative colitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.497
IKZF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.7467
SW1417	CCLE Cell Line Gene CNV Profiles	-1.0	-1.32229
disease	DISEASES Experimental Gene-Disease Association Evidence Scores	1.0	0.345945
large intestine cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.053645
Autoimmune disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.957
Vacuole	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
Lichen disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.222
Vesicle lumen	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.152
Liver hepatocellular carcinoma_LIHC_TCGA-G3-A3CI-01A-11R-A213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Gingivitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.613
PMC6604319-13072_2019_278_MOESM3_ESM.xlsx-CEM_ect_TET2_DEGs_DMRs_hDMRs-Unnamed_5_TET2	Rummagene Transcription Factor Associations 2026	1.0	null
Preterm premature rupture of the membranes	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.8
PPARD	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.334
ACCMESO1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.66025
gastrointestinal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.482084
Endocrine system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.208
Acute Myeloid Leukemia_LAML_TCGA-AB-2808-03A-01T-0734-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MCAS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.98527
IRF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	54.0
496100461_PCx_possible Alzheimer's disease_TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.13506
Airway fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.92
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4977-01A-01R-1334-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.08338
Bronchoalveolar lavage fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.192
NR2C2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	60.7814
HCC70	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.05196
Granulocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.576
496100594_TCx_possible Alzheimer's disease_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.50212
endocrine gland	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
TOV-112D	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.899783
Brain Lower Grade Glioma_LGG_TCGA-DU-A76L-01A-11R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Intestinal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.248
TEF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.1148
PMC8567035-CTM2-11-e578-s001.xlsx-transcription_misregulation-RUNX1_RUNX1	Rummagene Transcription Factor Associations 2026	1.0	null
TFAP4::FLI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.6555
cell type benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.431144
Crohn's disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.733
496100380_FWM_no dementia_no TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.38032
Lung adenocarcinoma_LUAD_TCGA-91-6829-11A-01R-1858-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
female reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.220424
Lymphatic system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.069
Bladder Urothelial Carcinoma_BLCA_TCGA-FD-A5BS-01A-21R-A26T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Secretory granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.019
Tooth disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.399
Lung adenocarcinoma_LUAD_TCGA-73-4676-11A-01R-1755-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Urinary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.596
Nutrition disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.328
Leukopenia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.143
Autoimmune disease of musculoskeletal system	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.77
Vaginal epithelial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.006
16207381-Table1Sa	GeneSigDB Published Gene Signatures	1.0	null
Lung cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.098
OPM-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.854241
Kidney Chromophobe_KICH_TCGA-KN-8427-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
extracellular region part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
HCC70	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06149
HESX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.3014
Gastrointestinal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.079
Benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.137
POLR2A	ENCODE Transcription Factor Targets	1.0	null
NCI-H2804	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.915686
Opportunistic mycosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.486
Mixed Salivary Gland Tumor	DisGeNET Gene-Disease Associations	1.0	null
NCI-H1155	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49384
skeletal system	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	1.53602
Vaginal mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.741
pancreas	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Mucous cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.567
cell periphery	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.182122
Bladder Urothelial Carcinoma_BLCA_TCGA-YC-A8S6-01A-31R-A38B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Viscus	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Lung squamous cell carcinoma_LUSC_TCGA-22-5478-11A-11R-1635-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Oral candidiasis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.27
Brain Lower Grade Glioma_LGG_TCGA-S9-A7IY-01A-11R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Vascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.781
Commensal bacterial infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.038
ATF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.4755
Lung squamous cell carcinoma_LUSC_TCGA-22-4609-11A-01R-2125-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
caused	GeneRIF Biological Term Annotations	1.0	null
Obstructive lung disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.144
Ovarian cyst	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.549
opportunistic mycosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.115398
Allergic contact dermatitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.112
RCC10RGB	CCLE Cell Line Gene CNV Profiles	1.0	1.86144
membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.374666
dh14	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.598
Disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.294
ZNF354A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	71.2437
secretory granule lumen	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
release	GeneRIF Biological Term Annotations	1.0	null
IRF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.9486
Myeloid dendritic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.868
HCC1171	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06149
ECC10	CCLE Cell Line Gene CNV Profiles	1.0	1.91001
PMC8569982-41065_2021_205_MOESM1_ESM.xlsx-mono_THP1_a2b_tpm1-gene_GLI2	Rummagene Transcription Factor Associations 2026	1.0	null
ASPC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.899783
OUMS27	CCLE Cell Line Gene CNV Profiles	1.0	1.48286
reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.071962
IgA glomerulonephritis	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	2.027
ZSCAN16	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.9052
SNU201	CCLE Cell Line Gene CNV Profiles	1.0	2.01832
Extracellular matrix	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
Female reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.445
Salivary gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.6
CAL 54	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.899783
NR2F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.5717
reproductive system disease	DISEASES Experimental Gene-Disease Association Evidence Scores	1.0	0.345945
integument	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.449886
NCIH2342	CCLE Cell Line Gene CNV Profiles	-1.0	-1.91893
Lung squamous cell carcinoma_LUSC_TCGA-22-4593-11A-01R-1820-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
brain	HPA Tissue Gene Expression Profiles	-1.0	-1.05817
Crohn Disease	DisGeNET Gene-Disease Associations	1.0	null
Tooth enamel	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.037
MKN-74	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02719
NCIH196	CCLE Cell Line Gene CNV Profiles	-1.0	-1.76451
other organism part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.363185
Eccrine sweat gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.579
OV-90	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.880955
Calprotectin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.112
Multimerin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.725
ZNF317	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.4135
Biofilm	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.823
Perinatal necrotizing enterocolitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.09
POU4F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.9384
endocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05052
Phagocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.515
Trypanosomoid form	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.126
succinate-CoA ligase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.071
bonemarrow_5a	HPA Tissue Sample Gene Expression Profiles	1.0	1.87388
Hematopoietic system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.495
Cytoplasmic vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
Ileocecum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.734
mesentery	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.157998
Rheumatic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.06
intracellular organelle part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Periodontal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.979
FOXH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.0314
Vesicle lumen	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
perianth	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.660304
IGROV1	CCLE Cell Line Gene CNV Profiles	1.0	1.42758
NCI-H929	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.986022
urinary system disease	DISEASES Experimental Gene-Disease Association Evidence Scores	1.0	0.995303
KYM1	CCLE Cell Line Gene CNV Profiles	1.0	1.59051
pancreas	HPA Tissue Gene Expression Profiles	-1.0	-1.05817
HPBALL	CCLE Cell Line Gene CNV Profiles	1.0	1.53861
PAX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.1256
bonemarrow_6c	HPA Tissue Sample Gene Expression Profiles	1.0	1.70635
Kidney renal clear cell carcinoma_KIRC_TCGA-B8-5162-01A-01R-1420-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
azurophil granule lumen	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	2.027
Disease of anatomical entity	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	2.027
Colon cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.075
PMC9692021-Table_4.xlsx-Table_S4-Table_S4_405_DEGs_of_RA_synovial_tissues_between_NFIL3-high_and_NFIL3-low_group_NFIL3	Rummagene Transcription Factor Associations 2026	1.0	null
paneth cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.66207
Uterine epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.668
S100A9 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.272
Tear	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.405
MHC class II protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.695
NCI-H2009	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10169
Goblet cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.568
NOD-like receptor signaling pathway	KEGG Pathways 2026	1.0	null
protein kinase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.083822
Intestinal gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.806
IRF9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.5158
496100443_HIP_no dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.75702
peptide	GeneRIF Biological Term Annotations	1.0	null
Peritonitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.233
Dental caries	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.698
Primary lysosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.323
SNU-475	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.53655
Endocervix	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.056
cytoplasmic part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.048874
Megakaryoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.787
gastrointestinal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042178
TCF7L1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.5814
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-FU-A3NI-01A-11R-A21T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CPC-N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.969687
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4174-01A-02R-1289-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Cytoplasmic vesicle lumen	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
Oral epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.315
KU812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.32305
Lung squamous cell carcinoma_LUSC_TCGA-22-1016-01A-01R-0692-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Acute Myeloid Leukemia_LAML_TCGA-AB-2838-03A-01T-0736-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
blood plasma	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.482428
Intestinal mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.529
FOXP1	ChEA Transcription Factor Targets	1.0	null
Endocarditis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.49
Vaginal epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.069
MEF2A	JASPAR Predicted Transcription Factor Targets	1.0	null
respiratory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.37629
NCI-H820	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.53655
gland	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.864
H322T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07988
Herpes simplex	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.137
cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.039298
Prostate adenocarcinoma_PRAD_TCGA-CH-5745-01A-11R-1580-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
JHOS4	CCLE Cell Line Gene CNV Profiles	-1.0	-1.68125
Lower respiratory tract disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.844
Ileitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.144
HNF4A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.75
Bladder Urothelial Carcinoma_BLCA_TCGA-2F-A9KW-01A-11R-A38B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
disease of anatomical entity	DISEASES Experimental Gene-Disease Association Evidence Scores	1.0	0.345945
Cardiovascular system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.853
Fibroma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.069
IgA immunoglobulin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.615
OVCAR8	CCLE Cell Line Gene CNV Profiles	-1.0	-2.36558
OCI-M2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.31696
TP53	JASPAR Predicted Transcription Factor Targets	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A2A1-06A-11R-A18T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Male urethra	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.552
cytoplasmic membrane-bounded vesicle lumen	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Lacrimal apparatus disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.061
spleen_3d	HPA Tissue Sample Gene Expression Profiles	1.0	0.935495
infection	GeneRIF Biological Term Annotations	1.0	null
intracellular	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
f96	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.522
viscus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.391176
12917485-Table8	GeneSigDB Published Gene Signatures	1.0	null
Ovarian follicular epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.94
cytoplasmic vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
intracellular organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
CAL78	CCLE Cell Line Gene CNV Profiles	-1.0	-1.81205
OCUM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.962118
Lichen planus	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.223
Hemolymph	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.045
vascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.044498
cytoplasmic vesicle part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Rectal adenocarcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.955
CW2	CCLE Cell Line Gene CNV Profiles	1.0	1.61714
female reproductive system disease	DISEASES Experimental Gene-Disease Association Evidence Scores	1.0	0.345945
carpel	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.233731
Genital mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.003
SNU620	CCLE Cell Line Gene CNV Profiles	1.0	1.76226
Small intestine cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.597
496100451_TCx_no dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.2052
20460173-ImmPortCytokines	GeneSigDB Published Gene Signatures	1.0	null
Phagolysosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.271
idiopathic interstitial pneumonia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.245046
bone marrow	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	1.53602
Brain disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.306
Arteriosclerosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.332
KCL22	CCLE Cell Line Gene CNV Profiles	1.0	1.62128
vasculitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.11806
KYSE-70	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35826
vacuolar lumen	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
hsa-miR-3910	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
Common cold	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.06
Bone disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.657
TGIF2LX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.7001
viral infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.061678
Cecum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.406
CAL-85-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25415
Type 2 diabetes mellitus	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.299
Cystic fibrosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.587
20460173-ImmPortComprehensiveListofImmune-RelatedGenes	GeneSigDB Published Gene Signatures	1.0	null
Plant candle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.504
Lung squamous cell carcinoma_LUSC_TCGA-56-7579-11A-01R-2045-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
496100440_FWM_possible Alzheimer's disease_no TBI_95-99_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.06434
calyx	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.985859
Azurophil granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.373
FOXB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.7952
collagen-containing extracellular matrix	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
1,3-beta-D-glucan synthase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.96
OCI-AML2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.925194
External encapsulating structure	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
craniosynostosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.391885
Pancreatitis	DisGeNET Gene-Disease Associations	1.0	null
GATA1::TAL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.02
Azurophil granule lumen	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
Malignant Transformation	DisGeNET Gene-Phenotype Associations	1.0	null
Kidney Chromophobe_KICH_TCGA-KN-8435-11A-01R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Inherited metabolic disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.736
Merocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.578
skin_6a	HPA Tissue Sample Gene Expression Profiles	1.0	0.921108
SRF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.3309
Aphthous stomatitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.038
Hepatitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.087
Condyloma	DisGeNET Gene-Disease Associations	1.0	null
Contact dermatitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.098
gastrointestinal tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.612555
Autosomal dominant disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.051
Lung adenocarcinoma_LUAD_TCGA-44-5645-11A-01R-1628-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
extracellular space	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Lung adenocarcinoma_LUAD_TCGA-44-6148-11A-01R-1858-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
lower respiratory tract disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.393374
ZNF547	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.0229
antibacterial	GeneRIF Biological Term Annotations	1.0	null
Gastrointestinal endocrine cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.418
496100452_HIP_possible Alzheimer's disease_no TBI_95-99_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.27145
small ribosomal subunit	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.431041
Bone inflammation disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.677
bonemarrow_6a	HPA Tissue Sample Gene Expression Profiles	1.0	1.70297
Lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.011
EFM-19	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35826
ERF::HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.2509
bone marrow	HPA Tissue Gene Expression Profiles	1.0	2.24765
MT-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.969988
ME-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.987004
COLO-704	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.14835
Immune system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.97
12393520-Table5	GeneSigDB Published Gene Signatures	1.0	null
head	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055734
ETV2::HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.6801
autoimmune disease of cardiovascular system	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.510728
IRF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.9478
496100310_TCx_no dementia_no TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.29646
Eye disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.25
Staphylococcus aureus infection	KEGG Pathways 2026	1.0	null
NCI-H146	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.3135
Lung adenocarcinoma_LUAD_TCGA-44-6147-11A-01R-1858-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.853
CHAGO-K-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.988771
GSE76425_0_v_7_lenalidomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Myelocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.164
Gut mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.797
Uterine Carcinosarcoma_UCS_TCGA-N5-A4RD-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RARA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	70.6243
Kidney renal papillary cell carcinoma_KIRP_TCGA-MH-A855-01A-11R-A355-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
against	GeneRIF Biological Term Annotations	1.0	null
BICR 31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.857372
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Mesothelioma_MESO_TCGA-SH-A7BH-01A-11R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
extracellular vesicular exosome	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
Kernicterus	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.157
BT-20	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20225
megakaryoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.164406
Head and Neck squamous cell carcinoma_HNSC_TCGA-QK-A6IJ-01A-11R-A31N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NR4A1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.5834
HCC2279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.15349
Lung adenocarcinoma_LUAD_TCGA-91-8496-01A-11R-2403-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Extracellular space	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
J82	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.05196
HCC12	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49384
serine-type endopeptidase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.131
SNU475	CCLE Cell Line Gene CNV Profiles	-1.0	-1.46355
Pheochromocytoma and Paraganglioma_PCPG_TCGA-P7-A5NY-05A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Digestive gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
hsa-miR-4433	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
Pheochromocytoma and Paraganglioma_PCPG_TCGA-W2-A7UY-01A-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
FOXP1-21924763-HESC-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-JX-A3Q0-01A-11R-A32Y-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Superficial temporal artery	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.755
RERF-LC-KJ	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.41787
Cecal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.357
HCC1493	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09202
Calcitonin family receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.77
animal	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
HUG1N	CCLE Cell Line Gene CNV Profiles	1.0	1.53574
hnp1	GeneRIF Biological Term Annotations	1.0	null
SPI1	ENCODE Transcription Factor Targets	1.0	null
Severe congenital neutropenia 3	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.171
PPARA::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.685
positive transcription elongation factor complex b	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.349105
Extracellular exosome	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
496100304_HIP_no dementia_no TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.1821
encodes	GeneRIF Biological Term Annotations	1.0	null
Sarcoma_SARC_TCGA-3B-A9HI-01A-11R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
leukocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.703945
Unipolar Depression	DisGeNET Gene-Disease Associations	1.0	null
SPI1_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cervix uteri	GTEx Tissue Gene Expression Profiles	-1.0	-2.09662
Chorioamnionitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.816
Major Depressive Disorder	DisGeNET Gene-Disease Associations	1.0	null
Epididymal epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.699
transferase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.050034
HS 940.T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.39858
Colonic epithelium cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.526
Disease of metabolism	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.755
Amniochorion	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.018
Vagina	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.628
Diabetes Mellitus	DisGeNET Gene-Disease Associations	1.0	null
musculoskeletal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.046496
Bronchial disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.494
Lupus erythematosus	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.424
Respiratory failure	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.346
Vaginitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.678
benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.373698
Serine protease inhibitor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.132
viscus	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Malignant Neoplasm	DisGeNET Gene-Disease Associations	1.0	null
cell	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
megakaryocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.171805
enteroendocrine cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.451042
HCC515	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.46388
OE19	CCLE Cell Line Gene CNV Profiles	1.0	2.58043
Tooth	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.538
ASPC1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.57056
NCI-H322T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07988
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-VS-A94W-01A-12R-A37O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SOX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.2196
hsa-miR-330-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
Bacterial infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.977
serine/threonine protein kinase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.119278
Monopolin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.458
KYSE-450	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12402
Pancreatic adenocarcinoma_PAAD_TCGA-IB-7897-01A-21R-2204-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Outer membrane-bounded periplasmic space	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.054
Gut epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.228
Trypanosomiasis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.094
KMS27	CCLE Cell Line Gene CNV Profiles	1.0	1.57667
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4988-01A-01R-1334-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Inner mucus layer	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.664
Vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
Intestinal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.821
Acquired immunodeficiency syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.215
Dry eye syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.047
intracellular organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.043172
PMC11481653-mmc33.pdf-140-SOX4_SOX4	Rummagene Transcription Factor Associations 2026	1.0	null
SU-DHL-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.39858
intracellular organelle lumen	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
azurophil granule	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
myeloid progenitor cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.07192
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-FU-A770-01A-11R-A33Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Columnar cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.14
iv95	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.332
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-EK-A2GZ-01A-11R-A180-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Uterine Carcinosarcoma_UCS_TCGA-NG-A4VW-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Fibrinogen complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.266
Vacuolar lumen	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
Reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.518
behcet's disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.510728
Lung adenocarcinoma_LUAD_TCGA-38-4632-11A-01R-1755-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lymphatic system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.209
Sarcoma_SARC_TCGA-DX-A1L4-01A-12R-A26T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Colon mucinous adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.03
Dental caries (decayed and filled deciduous teeth)	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.530103
Prostate adenocarcinoma_PRAD_TCGA-G9-6379-01A-11R-A31N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Breast disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.083
NCI-H1703	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12954
Periodontitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.923
Oral epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.393
FOXP1-21924763-HESCS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
extracellular region part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.065555
SHOX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.9062
nuclear part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.046347
PK59	CCLE Cell Line Gene CNV Profiles	1.0	1.56244
Lung adenocarcinoma_LUAD_TCGA-91-6828-11A-01R-1858-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Mouth disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.911
transcription elongation factor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.240996
uterine disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.552851
VMRC-LCD	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09112
Recurrent Upper Respiratory Tract Infection	DisGeNET Gene-Disease Associations	1.0	null
Thrombosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.361
Villus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.597
JHOS-4	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.05196
CDX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.0605
Gingival disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.549
dermal dendritic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.472704
ZNF766	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.4066
Colorectal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.24
mbl2	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.84
vacuole	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
HOP-92	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.953792
pylori	GeneRIF Biological Term Annotations	1.0	null
extracellular membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
Syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.518
Cell envelope	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.283
induces	GeneRIF Biological Term Annotations	1.0	null
PMC11257892-Table_1.xlsx-S2-Supplementary_Table_S2_All_results_of_the_preliminary_MR_analysis_NR3C2	Rummagene Transcription Factor Associations 2026	1.0	null
Aggressive Periodontitis	DisGeNET Gene-Disease Associations	1.0	null
Stomach disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.037
Primary immunodeficiency disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.955
SIX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.3737
Venom gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.662
Macrolide transmembrane transporter complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.772
496100373_PCx_no dementia_no TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.03609
Transcriptional misregulation in cancer	KEGG Pathways 2026	1.0	null
Secretory granule lumen	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.164
FOXC1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.6838
NCI-H1781	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.17752
extraorganismal space	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.342285
Fungal infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.658
Amniotic cavity	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.336
lymph node	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.067397
pneumonia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.235268
cell part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
HCC2814	CCLE Cell Line Gene CNV Profiles	-1.0	-1.35561
PPARG	JASPAR Predicted Transcription Factor Targets	1.0	null
OVCA 432	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.41787
tissues, cell types and enzyme sources	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	1.53602
aeruginosa	GeneRIF Biological Term Annotations	1.0	null
Extracellular non-membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.896
496100622_HIP_no dementia_no TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.72532
PMC12518476-10067_2025_7574_MOESM9_ESM.xlsx-Sheet2-RNAseq_DEGs_of_KD_AR	Rummagene Transcription Factor Associations 2026	1.0	null
1321N1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.40533
Leukocyte disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.131
Peptidase inhibitor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.109
G140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.837512
Typhoid fever	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.096
amniotic fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.455284
Rectum adenocarcinoma_READ_TCGA-BM-6198-01A-11R-1736-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Periodontitis	DisGeNET Gene-Disease Associations	1.0	null
ileocecum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.214765
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-4710-01A-01R-1503-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Musculoskeletal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.852
Behcet's disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.278
Sublingual gland duct	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.569
Monogenic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.494
Systemic mycosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.498
Lung squamous cell carcinoma_LUSC_TCGA-43-6143-11A-01R-1820-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
animal	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	1.53602
Neuro-Behcet Disease	DisGeNET Gene-Disease Associations	1.0	null
MDA-MB-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.32951
Golgi apparatus	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
systemic mycosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.094966
Duodenal mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.718
Bacterial vaginosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.68
HNF1A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.9241
Skin Cutaneous Melanoma_SKCM_TCGA-FS-A4F8-06A-11R-A266-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Pellicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.417
corolla	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.692085
Prostate adenocarcinoma_PRAD_TCGA-CH-5763-01A-11R-1580-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Secretory vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
Specific granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.945
glomerulonephritis	DISEASES Experimental Gene-Disease Association Evidence Scores	1.0	0.995303
Pneumonia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.61
Shigellosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.04
Cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.748
Leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.095
bonemarrow_6b	HPA Tissue Sample Gene Expression Profiles	1.0	1.78603
Promyelocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.484
Glucosidase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.931
Carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.441
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.790212
Dk	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.149
Prostate adenocarcinoma_PRAD_TCGA-J4-A6G1-01A-11R-A311-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.658272
salivarygland_6c	HPA Tissue Sample Gene Expression Profiles	1.0	0.82907
ONECUT1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.6251
tocilizumab_homo sapiens_gpl6244_gse25160	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
MOLM6	CCLE Cell Line Gene CNV Profiles	1.0	2.45031
Mesenteric lymph node	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.91
HT-29	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.63629
Bladder Urothelial Carcinoma_BLCA_TCGA-ZF-AA4W-01A-12R-A38B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
496100516_FWM_probable Alzheimer's disease_TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.0202
Artery disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.626
Glomerulonephritis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.187
Diabetes mellitus	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.691
bone disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.053563
Gingiva	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.58
cis-Golgi network	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.661
496100359_PCx_no dementia_no TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.93966
bone marrow cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.066516
skeletal system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052541
Severe COVID-19	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.268
Mitotic spindle pole body	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.74
tooth	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.215341
Parotid gland duct	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.595
NR4A2::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.1879
HCC70	CCLE Cell Line Gene CNV Profiles	-1.0	-2.23061
Coronary artery disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.263
SW 1417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.52631
hsa-miR-3122	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
Endocardium disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.481
amniotic cavity	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.787299
496100473_TCx_possible Alzheimer's disease_TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.79558
DUXA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.6999
intestinal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.047669
periodontal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.341639
coli	GeneRIF Biological Term Annotations	1.0	null
cellular_component	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
cytosolic ribosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.421997
Pulmonary tuberculosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.221
20460173-ImmPortAntimicrobials	GeneSigDB Published Gene Signatures	1.0	null
secretory granule	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
virion	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.229176
Lung squamous cell carcinoma_LUSC_TCGA-56-7730-11A-01R-2125-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Acute Myeloid Leukemia_LAML_TCGA-AB-2963-03A-01T-0734-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Liver	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Kawasaki disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.114
Pancreatic adenocarcinoma_PAAD_TCGA-HZ-8001-01A-11R-2204-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SW 1116	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.30901
fungal infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.070955
Lymphadenitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.019
Extracellular vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
Aggressive periodontitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.817
Agranulocytosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.012
Type I pilus	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.635
RT-112	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.951329
Bacterial nucleoid	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.695
Kidney renal papillary cell carcinoma_KIRP_TCGA-B1-5398-01A-02R-1592-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CEBPA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.1534
intestinal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.047462
primary lysosome	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Kidney disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	2.027
gingiva	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.451813
SNU-216	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.950974
Disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.773
disease by infectious agent	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.048445
Psoriasis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.559
Polymorphonuclear neutrophil	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.405
exposed	GeneRIF Biological Term Annotations	1.0	null
Basophil percentage of white cells	GWAS Catalog SNP-Phenotype Associations 2025	1.0	1.45229
marrow cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.072479
Brain Lower Grade Glioma_LGG_TCGA-DB-5279-01A-03R-2347-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
eyelid	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.158395
Placenta disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.52
Equatorial microtubule organizing center	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.765
Vaginal fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.57
RT4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16783
IgA glomerulonephritis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.248
HOXA10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.9562
KMS-12-PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29967
eosinophil	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.2259
Basophil count	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.839794
imatinib_homo sapiens_gpl96_gds3044	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Tumor Cell Invasion	DisGeNET Gene-Phenotype Associations	1.0	null
CDX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.2703
whole body	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
me180	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.548
bone development disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.07774
bone marrow	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.065906
Endocytic vesicle lumen	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.964
HCC202	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.46388
BT-549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.915686
Systemic lupus erythematosus	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.375
Prostate adenocarcinoma_PRAD_TCGA-G9-6338-01A-12R-1965-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Polymorphonuclear leukocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.451
Autoimmune disease of skin and connective tissue	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.535
Thoracic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.082
Head and Neck squamous cell carcinoma_HNSC_TCGA-CN-5370-01A-01R-2016-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Hepatobiliary disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.335
PMC12518476-10067_2025_7574_MOESM9_ESM.xlsx-Sheet2-intersection_DEGs_of_KD_AR	Rummagene Transcription Factor Associations 2026	1.0	null
Brodmann area 35	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.63
Monocyte percentage of white cells	GWAS Catalog SNP-Phenotype Associations 2025	1.0	2.05229
Nephritis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.274
Host cellular component	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.715
Rectum adenocarcinoma_READ_TCGA-AF-2690-01A-02R-1736-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Acute Periodontitis	DisGeNET Gene-Disease Associations	1.0	null
Brain - Anterior cingulate cortex (BA24)	GTEx Tissue Gene Expression Profiles 2023	1.0	7.20126
Oral squamous cell carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.685
inflorescence	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.168017
unfolding	GeneRIF Biological Term Annotations	1.0	null
POU6F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.3619
HS 852.T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.86916
Tracheal mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.579
precipitation	GeneRIF Biological Term Annotations	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-FS-A1Z4-06A-11R-A18T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Peyer's gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.607
Mucus layer	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.691
NCI-H209	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49384
Human immunodeficiency virus infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.434
sucrase-isomaltase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.056
Arthritis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.626
spleen	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.659
Microsporidian	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.572
cytoplasmic membrane-bounded vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Enteroendocrine cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.422
SW 480	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.21562
Saliva	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.007
extracellular region	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
Golgi lumen	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
MFM-223	COSMIC Cell Line Gene CNV Profiles	1.0	2.15465
dermis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.108559
cytosolic part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.111385
Central nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.514
intracellular membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
BARX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.1305
Sensory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.297
organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.048557
chorioamnionitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.822488
their	GeneRIF Biological Term Annotations	1.0	null
Planktonic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.834
Glucose metabolism disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.68
APUD cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.42
Ileal mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.032
NR2F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	89.4409
Acquired metabolic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.324
Parasitic infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.294
fungal-type cell wall	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.801
organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.039347
Exocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.835
protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.042606
Malaria	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.091
KARPAS-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24283
Meibomian gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.586
ZNF784	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.416
RORC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.1602
kidney disease	DISEASES Experimental Gene-Disease Association Evidence Scores	1.0	0.995303
NR1H4::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.9356
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0452
Bladder Urothelial Carcinoma_BLCA_TCGA-BL-A13J-11A-13R-A10U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE76425_0_v_5_lenalidomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
SNU-449	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.899783
Jejunal epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.749
Tertiary granule membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.129
NR4A2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.5261
PMC12749580-42003_2025_9274_MOESM5_ESM.xls-Supplementary_Data_2B-Supplementary_Table2B_Full_results_of_the_proteome-wide_MR_in_Ukb_ppp_NR3C2	Rummagene Transcription Factor Associations 2026	1.0	null
HAND2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.8215
BEN	CCLE Cell Line Gene CNV Profiles	-1.0	-1.64997
NCI-H345	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.32951
cell part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.045675
nucleoplasm part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.056272
Synovia	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.021
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-7245-11A-01R-2016-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-DK-A3WX-01A-22R-A22U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Liver disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.309
Adrenocortical carcinoma_ACC_TCGA-OR-A5KT-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ESRRB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.1511
periodontitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.413527
Obesity	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.303
whole body	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	1.53602
POLR2A_H54_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Coronary Heart Disease	DisGeNET Gene-Disease Associations	1.0	null
liver	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
blood	GTEx Tissue Gene Expression Profiles	1.0	2.16929
Adult respiratory distress syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.376
Intestinal epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.679
melting	GeneRIF Biological Term Annotations	1.0	null
Respiratory system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.113
Tuberculosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.523
epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.250953
Kidney disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.503
A4FUK	CCLE Cell Line Gene CNV Profiles	1.0	1.36582
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.54982
Adenoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.061
PMC11474056-pnas.2404841121.sd01.xlsx-Supplemental_Table_8_Fig1G-H-Supplemental_Table_8_Transcriptomic_overlap_between_LPS_and_Sepsis_and_or_Tuberculosis_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
potentiated	GeneRIF Biological Term Annotations	1.0	null
Monocyte count	GWAS Catalog SNP-Phenotype Associations 2025	1.0	1.3699
DV-90	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49384
granulocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.968955
Neurodegenerative disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.077
THP-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49384
BXPC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.837512
PATU8988S	CCLE Cell Line Gene CNV Profiles	-1.0	-2.48975
PMC12518476-10067_2025_7574_MOESM9_ESM.xlsx-Sheet4-RNAseq_SJIA_KD_up_inter_AR	Rummagene Transcription Factor Associations 2026	1.0	null
SNU245	CCLE Cell Line Gene CNV Profiles	-1.0	-1.49372
GI1	CCLE Cell Line Gene CNV Profiles	1.0	1.42193
vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
Rosacea	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.238
Adenolymphoma	DisGeNET Gene-Disease Associations	1.0	null
Dental plaque	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.379
Reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.147
CJM	CCLE Cell Line Gene CNV Profiles	1.0	1.9876
periodontium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.358174
ZNF324	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.1075
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
ESRRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.2909
Lung disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.778
Kidney renal clear cell carcinoma_KIRC_TCGA-CZ-5985-01A-11R-1672-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-ER-A1A1-06A-11R-A18U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hsa-miR-3670	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
Epimastigote	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.596
Anophthalmia And Pulmonary Hypoplasia	DisGeNET Gene-Disease Associations	1.0	null
SU-DHL-6	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.934386
provirus	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.165231
idiopathic pulmonary fibrosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.275445
Tumor Progression	DisGeNET Gene-Phenotype Associations	1.0	null
Salivary duct	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.76
abdomen	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.066363
Extracellular membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
Lung adenocarcinoma_LUAD_TCGA-50-5933-11A-01R-1755-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCI-H522	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08608
HNF1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.8147
GATA6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.487
G61	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.32305
Bladder Urothelial Carcinoma_BLCA_TCGA-DK-A3WW-01A-22R-A23N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Primary lysosome	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
Coronavirus infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.783
TRPS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.295
diseases	GeneRIF Biological Term Annotations	1.0	null
Urinary tract infection	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.44
gingival fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.360409
catalytic complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.046421
DOHH2	CCLE Cell Line Gene CNV Profiles	1.0	1.47859
Candidiasis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.53
496100495_FWM_no dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.79033
Skin Cutaneous Melanoma_SKCM_TCGA-ER-A195-06A-11R-A18U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
organism form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05721
Ischemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.048
Conjunctival epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.772
Neutrophil extracellular trap	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.899
Specific granule lumen	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.308
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-GR-A4D5-01A-11R-A31O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Allergic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.163
cardiovascular system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.04258
Nasal lavage fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.006
thermal	GeneRIF Biological Term Annotations	1.0	null
lymphoid tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051991
Secretory granule	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
LinE complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.449
Glomerulonephritis	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	2.027
granulocytes	GeneRIF Biological Term Annotations	1.0	null
Colitis	DisGeNET Gene-Disease Associations	1.0	null
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.791877
Platelet alpha granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.002
RORA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	54.6567
conjunctiva	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.22246
cytosolic small ribosomal subunit	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.532078
Thoracic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.041
Biofilm matrix	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.733
dental caries	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.460129
crypt	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.09341
SREBF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.3801
hsa-miR-1255b	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
MEIS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.6026
Large intestine cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.25
IM-95M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49384
Cell pole	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.042
Neutropenia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.022
MEG-01 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.852
Acute Myeloid Leukemia_LAML_TCGA-AB-2834-03A-01T-0734-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Promastigote	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.716
Submandibular gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.946
SOX18	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.0726
Colorectal Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
Autoimmune disease of gastrointestinal tract	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.474
Jejunum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.296
intracellular part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Septicemia	DisGeNET Gene-Disease Associations	1.0	null
prednisolone_homo sapiens_gpl570_gse32962	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
ll29	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.033
11861292-Table4	GeneSigDB Published Gene Signatures	1.0	null
Mucous gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.562
TCF7L2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.3307
hypersensitivity reaction type ii disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.05574
aureus	GeneRIF Biological Term Annotations	1.0	null
embryonic structure	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058706
Secretory granule lumen	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
GSE76425_0_v_12_lenalidomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
POU6F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.0289
intracellular organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.04927
Sarcoma_SARC_TCGA-HB-A2OT-01A-11R-A21T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A2GL-06A-11R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lysosome	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
Respiratory syncytial virus infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.181
Adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.078
vesicle lumen	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Cell tip	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.096
SRY	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.5357
endoplasmic reticulum chaperone complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.339261
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-VS-A8EI-01A-11R-A37O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Leptospirosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.368
Sarcoma_SARC_TCGA-QQ-A5V2-01A-11R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.351
alimentary canal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.594451
IEC-18 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.694
digestive gland	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Conjunctiva	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.989
Chagas disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.136
S100A8 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.427
Intracellular vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
Squamous cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.164
asthma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.161331
ovary	HPA Tissue Gene Expression Profiles	-1.0	-1.05817
Amylin receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.958
vacuolar part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Osteogenesis imperfecta type 17	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.284
cell wall	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.481258
NCI-H292	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.988771
Cerebrovascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.009
Chronic obstructive pulmonary disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.147
496100388_HIP_probable Alzheimer's disease_no TBI_87_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.43912
Gingival fibroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.005
organelle lumen	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
fetus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.104648
HCC2688	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35826
ovary	GTEx Tissue Gene Expression Profiles	-1.0	-1.14204
other organism membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.363185
Membrane attack complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.042
cellular_component	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.352142
Renal Cell Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
GATA2	JASPAR Predicted Transcription Factor Targets	1.0	null
nephritis	DISEASES Experimental Gene-Disease Association Evidence Scores	1.0	0.995303
bronchial disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.096226
Neoplasm Metastasis	DisGeNET Gene-Phenotype Associations	1.0	null
Hemocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.875
Efflux pump complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.192
RUNX2	JASPAR Predicted Transcription Factor Targets	1.0	null
whole plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.083513
PC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.52581
small intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.671285
MCAS	CCLE Cell Line Gene CNV Profiles	-1.0	-1.39879
Kidney renal papillary cell carcinoma_KIRP_TCGA-B3-3925-01A-02R-1351-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
carboxy-terminal domain protein kinase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.340395
hsa-miR-298	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
golgi apparatus part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Lung adenocarcinoma_LUAD_TCGA-91-6830-01A-11R-1949-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
STAT3	JASPAR Predicted Transcription Factor Targets	1.0	null
Protease inhibitor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.125
MacAB-TolC complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.652
immune system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042036
intracellular part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.045942
U266B1	CCLE Cell Line Gene CNV Profiles	1.0	2.07539
FOXF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.1431
BICR 22	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.89912
Pheochromocytoma and Paraganglioma_PCPG_TCGA-SP-A6QC-01A-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Amnion	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.236
Golgi cisterna	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.628
regions	GeneRIF Biological Term Annotations	1.0	null
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.809386
Right colon	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.821
496100409_FWM_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.20189
spleen	HPA Tissue Gene Expression Profiles	1.0	0.890663
Brain Lower Grade Glioma_LGG_TCGA-E1-A7YQ-01A-11R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
bacteriocidal	GeneRIF Biological Term Annotations	1.0	null
hypersensitivity reaction disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.049927
20386565-TableS1	GeneSigDB Published Gene Signatures	1.0	null
hematopoietic system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-WY-A85C-01A-11R-A36H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Breast cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.042
Egg white	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.837
Wound fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.81
Rectum adenocarcinoma_READ_TCGA-DC-5337-01A-01R-1660-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Chorionic plate	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.878
Cognitive disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.04
Complement component C1q complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.399
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.58101
IRF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	64.2402
candidiasis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.28294
PBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.5556
G111	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.56969
toxins	GeneRIF Biological Term Annotations	1.0	null
Lupus Erythematosus	DisGeNET Gene-Disease Associations	1.0	null
lung disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.397098
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-EK-A2RN-01A-12R-A213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Immune system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.069
Lung microvascular endothelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.862
Amnion epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.027
New mitotic spindle pole body	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.828
DB	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04608
mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.232317
SNU61	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33894
Parasitic protozoa infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.288
OCI-AML5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.862843
spleen	GTEx Tissue Gene Expression Profiles	1.0	1.10361
mesenteric lymph node	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.220831
fetal membrane	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.378748
JHH4	CCLE Cell Line Gene CNV Profiles	-1.0	-1.75181
Funisitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.426
PMC12518476-10067_2025_7574_MOESM9_ESM.xlsx-Sheet3-RNAseq_SJIA_KD_inter_AR	Rummagene Transcription Factor Associations 2026	1.0	null
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-FF-8062-01A-11R-2213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
A549	CCLE Cell Line Gene CNV Profiles	1.0	1.69948
west nile fever	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.43288
lymphoid tissue	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
blood platelet	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.428783
disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.485125
ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.758
bone marrow	HPA Tissue Protein Expression Profiles	1.0	1.71785
BL-41 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.596
SREBF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.1955
Systemic scleroderma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.06
non-membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.048526
placenta disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.615138
neutrophil	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.019
HCMEC cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.553
endoplasmic reticulum part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.052504
Meiotic cohesin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.747
Amniotic fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.553
496100667_TCx_no dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.37247
cytoplasmic part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Primary bacterial infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.757
inflammatory bowel disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.163938
hsa-miR-4468	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
Venom apparatus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.643
PMC12518476-10067_2025_7574_MOESM8_ESM.xlsx-Sheet1-Up_regulated_DEGs_of_KD_AR	Rummagene Transcription Factor Associations 2026	1.0	null
Rectum adenocarcinoma_READ_TCGA-DC-6155-01A-11R-1660-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Small intestine epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.537
RORB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.4854
Gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Survivin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.677
Pterygium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.885
Outer mucus layer	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.795
extracellular organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
teeth hard tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.305587
Sepsis	DisGeNET Gene-Disease Associations	1.0	null
obstructive lung disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.279011
serine-type peptidase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.131
Carbohydrate metabolic disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.695
Gingival fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.876
NR2F6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.3619
Vaginal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.532
HCC4017	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-3.64449
HT29	CCLE Cell Line Gene CNV Profiles	-1.0	-1.45308
bacterial	GeneRIF Biological Term Annotations	1.0	null
KURAMOCHI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.30945
CDX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.4144
skin	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056027
chromosomal part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.043662
Prostate adenocarcinoma_PRAD_TCGA-KC-A4BR-01A-32R-A32Y-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Scleroderma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.036
UKE-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.74347
Amylin receptor complex 1	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.047
NR1H2::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.04
Vasculitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.456
Maltose transport complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.5
Leukemia	DisGeNET Gene-Disease Associations	1.0	null
ribosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.120729
20460173-ImmPortChemokines	GeneSigDB Published Gene Signatures	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-BC-A216-11A-11R-A155-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
C32	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.934947
Male reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.019
serine-tRNA ligase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.552
Skin Cutaneous Melanoma_SKCM_TCGA-FW-A5DY-06A-11R-A311-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ATP-binding cassette (ABC) transporter complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.765
viral genome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.100665
Urinary system disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	2.027
Amastigote	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.15
Eosinophilic leukemia cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.527
virion part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.231672
HCC2935	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.950974
phagocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.850845
Skin disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.695
NFIC	JASPAR Predicted Transcription Factor Targets	1.0	null
imatinib_homo sapiens_gpl571_gds3518	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
Whole body	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Integumentary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.693
Neutrophil	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.606
Azurophil granule lumen	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.335
Azurophil granule	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.042879
membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
Brain Lower Grade Glioma_LGG_TCGA-CS-6666-01A-11R-1896-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cytosolic large ribosomal subunit	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.669858
BEN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.98527
lung	GTEx Tissue Gene Expression Profiles	1.0	0.992777
blast cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.068648
12917485-Table6	GeneSigDB Published Gene Signatures	1.0	null
ribonucleoprotein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.093843
Hypertension	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.38
oral candidiasis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.583163
HEL	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33288
FLI1::DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.5534
JHH-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.85431
NFATC4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.7907
Teeth hard tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.38
Trypomastigote	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.277
adenoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.500761
vorinostat_homo sapiens_gpl6884_gse46703	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
Rheumatoid arthritis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.529
Sepal	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.552
Myeloid Leukemia	DisGeNET Gene-Disease Associations	1.0	null
Portio vaginalis cervicis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.102
IM-95	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.73898
Uterine disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.269
NCI-H1355	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.20911
gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.050307
OCT4-20526341-ESCS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Transmembrane transporter complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.028
Linear element	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.408
Small intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.179
Prostate adenocarcinoma_PRAD_TCGA-G9-6498-01A-12R-A311-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Leukocyte adhesion deficiency 1	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.026
Cytoplasmic vesicle lumen	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.214
ARGFX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.1526
Carotid atherosclerotic plaque	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.857
Germinal epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.01
Azurophil granule membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.809
yeast-form cell wall	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.105
Endocrine gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Secretory vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.946
Kidney failure	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.049
Extracellular region	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.726918
Alveolar bone	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.92
Alzheimer Disease	DisGeNET Gene-Disease Associations	1.0	null
SNU349	CCLE Cell Line Gene CNV Profiles	1.0	2.43191
MORCPR	CCLE Cell Line Gene CNV Profiles	-1.0	-1.73713