association	dataset	threshold value	standardized value
viral infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.053491
inducing	GeneRIF Biological Term Annotations	1.0	null
susceptibility	GeneRIF Biological Term Annotations	1.0	null
alpha	GeneRIF Biological Term Annotations	1.0	null
496100420_PCx_probable Alzheimer's disease_no TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.69967
SP in caudal perirhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.916556
Lung adenocarcinoma_LUAD_TCGA-50-6595-01A-12R-1858-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Foxo3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	16.3293
downstream	GeneRIF Biological Term Annotations	1.0	null
Stress, Psychological	DisGeNET Gene-Disease Associations	1.0	null
antimicrobials	GeneRIF Biological Term Annotations	1.0	null
leprosy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.233183
upper (rostral) rhombic lip	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.75526
MSL complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.69
Trachomatis	DisGeNET Gene-Disease Associations	1.0	null
il17a	GeneRIF Biological Term Annotations	1.0	null
Tuberculosis	DisGeNET Gene-Disease Associations	1.0	null
host	GeneRIF Biological Term Annotations	1.0	null
MSC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.5092
POLR2A_MCF-7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
musculoskeletal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.047449
modify	GeneRIF Biological Term Annotations	1.0	null
Keratinocyte	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
visfatin	GeneRIF Biological Term Annotations	1.0	null
saliva	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.662742
chemotaxis	GeneRIF Biological Term Annotations	1.0	null
hematopoietic stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.084968
female pudendum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.230382
KMS-28PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.83653
SPI1	ENCODE Transcription Factor Targets	1.0	null
membrane-bounded vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.058837
cell property	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.074578
phagocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.774834
BB-79-AG41_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	2.34848
lateral intermediate part of entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.04703
defb1	GeneRIF Biological Term Annotations	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CQ-A4CE-01A-11R-A266-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Middle Ear Cholesteatoma	DisGeNET Gene-Disease Associations	1.0	null
defences	GeneRIF Biological Term Annotations	1.0	null
attenuate	GeneRIF Biological Term Annotations	1.0	null
systemic mycosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.089521
migration	GeneRIF Biological Term Annotations	1.0	null
MA-31-VM30_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.24437
erk	GeneRIF Biological Term Annotations	1.0	null
periodontal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.750864
hitherto	GeneRIF Biological Term Annotations	1.0	null
HIV Infections	HuGE Navigator Gene-Phenotype Associations	1.0	null
polymorphic layer of rostral subiculum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.892315
internalization	GeneRIF Biological Term Annotations	1.0	null
vaginitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.506507
Multiple Sclerosis	DisGeNET Gene-Disease Associations	1.0	null
LB-70-YM83_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.351514
lipopolysaccharideinduced	GeneRIF Biological Term Annotations	1.0	null
oral cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.114043
FOXP1-21924763-HESCS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
ME-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0434
hbd2	GeneRIF Biological Term Annotations	1.0	null
cysteinecontaining	GeneRIF Biological Term Annotations	1.0	null
Periodontitis	DisGeNET Gene-Disease Associations	1.0	null
MGA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.521
oscc	GeneRIF Biological Term Annotations	1.0	null
IKZF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.1542
inner CP in rostral perirhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.20712
colonic epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.530693
SG in inferolateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.87571
even	GeneRIF Biological Term Annotations	1.0	null
colorectum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.070175
using	GeneRIF Biological Term Annotations	1.0	null
targeting	GeneRIF Biological Term Annotations	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-C9-A47Z-01A-11R-A24H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HCC1493	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.15927
epidermis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.10447
ZNF416	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.9304
intracellular organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.044192
against	GeneRIF Biological Term Annotations	1.0	null
preterm	GeneRIF Biological Term Annotations	1.0	null
healthy	GeneRIF Biological Term Annotations	1.0	null
FOSL2::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.2872
RARB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.9218
oral mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.968523
osteoblast cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.370121
polarization	GeneRIF Biological Term Annotations	1.0	null
bacterial-type flagellum	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.644
stratum pyramidale of rostral CA2	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-2.87081
electron	GeneRIF Biological Term Annotations	1.0	null
differentation	GeneRIF Biological Term Annotations	1.0	null
GSE138938_1_v_2_foxp2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Polymyositis	DisGeNET Gene-Disease Associations	1.0	null
inner CP in temporal polar cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.937282
varied	GeneRIF Biological Term Annotations	1.0	null
transient Purkinje cell clusters	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.31261
placental	GeneRIF Biological Term Annotations	1.0	null
Epidermolytic hyperkeratosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.108
496100459_PCx_no dementia_no TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.35003
DA-66-OE69_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.452888
osteoarthritis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.201635
thus	GeneRIF Biological Term Annotations	1.0	null
immune	GeneRIF Biological Term Annotations	1.0	null
Tuberculid	DisGeNET Gene-Disease Associations	1.0	null
CCR6	Pathway Commons Protein-Protein Interactions	1.0	null
variant	GeneRIF Biological Term Annotations	1.0	null
cell periphery	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.29623
VMRC-LCD	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.15826
Eosinophilia	DisGeNET Gene-Disease Associations	1.0	null
Facioscapulohumeral muscular dystrophy 2	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.018
Adrenocortical carcinoma_ACC_TCGA-OR-A5J8-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
mc4r	GeneRIF Biological Term Annotations	1.0	null
leukocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.61941
magnocellular (medial) division of MD	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.17283
MYC_MCF-7_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
uterine disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.160203
auditory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.707559
stratum spinosum	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
NCI-H522	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.21225
immunohistochemistry	GeneRIF Biological Term Annotations	1.0	null
paravermis of cerebellum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.15375
Xanthophore	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.669
similarities	GeneRIF Biological Term Annotations	1.0	null
PMC7232598__F4	PFOCR Pathway Figure Associations 2024	1.0	null
urinary system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053067
staphylococcus	GeneRIF Biological Term Annotations	1.0	null
inhibition	GeneRIF Biological Term Annotations	1.0	null
NCI-H889	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.76718
PK-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.896724
il22	GeneRIF Biological Term Annotations	1.0	null
divalent	GeneRIF Biological Term Annotations	1.0	null
ETV5::FOXO1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.084
agonist	GeneRIF Biological Term Annotations	1.0	null
bronchial epithelial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.53267
Sperm glycocalyx	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.34
hsa-miR-3692	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
plastic	GeneRIF Biological Term Annotations	1.0	null
situ	GeneRIF Biological Term Annotations	1.0	null
Nongonococcal Cervicitis	DisGeNET Gene-Disease Associations	1.0	null
VZ in caudal hippocampal proper	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.30216
fetal cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.268828
pneumonia	GeneRIF Biological Term Annotations	1.0	null
Kidney renal papillary cell carcinoma_KIRP_TCGA-P4-A5EA-01A-11R-A28H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Malignant Neoplasm	DisGeNET Gene-Disease Associations	1.0	null
AC-75-CE67_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	1.08432
mechanisms	GeneRIF Biological Term Annotations	1.0	null
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10649
resulting	GeneRIF Biological Term Annotations	1.0	null
agalactiae	GeneRIF Biological Term Annotations	1.0	null
leukemia cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054435
promote	GeneRIF Biological Term Annotations	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-FD-A3N6-01A-11R-A21D-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
membrane	GeneRIF Biological Term Annotations	1.0	null
BT-549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.966442
PMC10794847-mmc3.xlsx-PBRM1_KD_down-Table_S2_Differentially_expressed_genes_with_PBRM1_knockdown_in_the_differentiation_state_Related_to_Figure_2_AR	Rummagene Transcription Factor Associations 2026	1.0	null
aureus	GeneRIF Biological Term Annotations	1.0	null
NCI-H929	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04237
Lung squamous cell carcinoma_LUSC_TCGA-77-8131-01A-11R-2247-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NKX2-3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.692
psoriatic	GeneRIF Biological Term Annotations	1.0	null
VZ in caudal midinferior temporal cortex (area TF)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.29985
MAFA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.1775
extracellular matrix	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.136852
th2	GeneRIF Biological Term Annotations	1.0	null
integument	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Sarcoma_SARC_TCGA-X6-A7W8-01A-21R-A355-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
lateral subdivision of BNST	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.888967
molluscum contagiosum	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.808949
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-A45O-01A-21R-A24H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-63-5128-01A-01R-1443-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
FOXP1	ChEA Transcription Factor Targets	1.0	null
paneth cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.266757
lateral orbital frontal cortex (area 12/47)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.63524
PMC7100912-EMS85677-supplement-Suppl__Tables_1_8.xlsx-Table_6-Supplementary_Table_6_Nanostring_gene_expression_profiling_of_memory_T_cells_transduced_with_BHLHE40_BHLHE40	Rummagene Transcription Factor Associations 2026	1.0	null
fungoides	GeneRIF Biological Term Annotations	1.0	null
MKN-74	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14112
Bladder Urothelial Carcinoma_BLCA_TCGA-UY-A9PB-01A-11R-A38B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Rhinovirus Infection	DisGeNET Gene-Disease Associations	1.0	null
betadefensin3	GeneRIF Biological Term Annotations	1.0	null
Squamous Cell Carcinoma Of The Head And Neck	DisGeNET Gene-Disease Associations	1.0	null
GMP reductase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.725
constitutive	GeneRIF Biological Term Annotations	1.0	null
BNC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.6283
layer II of area 35c	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-2.09332
downregulated	GeneRIF Biological Term Annotations	1.0	null
SNU-449	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.949405
COLO 680N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.50374
lacks	GeneRIF Biological Term Annotations	1.0	null
p21	GeneRIF Biological Term Annotations	1.0	null
Acanthamoeba Keratitis	DisGeNET Gene-Disease Associations	1.0	null
hbds	GeneRIF Biological Term Annotations	1.0	null
neutrophil	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.747927
based	GeneRIF Biological Term Annotations	1.0	null
NKX2-5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.43
colonisation	GeneRIF Biological Term Annotations	1.0	null
gordonii	GeneRIF Biological Term Annotations	1.0	null
MZ in caudal perirhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.14544
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.0625
Head and Neck squamous cell carcinoma_HNSC_TCGA-BA-5557-01A-01R-1514-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
geographical	GeneRIF Biological Term Annotations	1.0	null
culture medium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.425726
lichen	GeneRIF Biological Term Annotations	1.0	null
Cystic Fibrosis	HuGE Navigator Gene-Phenotype Associations	1.0	null
FEZF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.8717
MYC	ENCODE Transcription Factor Targets	1.0	null
SU-DHL-6	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.01493
posterior hypothalamic nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.44816
Brain Lower Grade Glioma_LGG_TCGA-P5-A730-01A-11R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-VM-A8CA-01A-11R-A36H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
oral candidiasis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.507273
SNU-475	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.69608
ca2	GeneRIF Biological Term Annotations	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-ED-A7PX-01A-51R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
outer CP in midinferior temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.91317
Malignant Tumor Of Colon	DisGeNET Gene-Disease Associations	1.0	null
external granular (germinal) layer of lower rhombic lip	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.983207
explain	GeneRIF Biological Term Annotations	1.0	null
female reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054284
wegeners	GeneRIF Biological Term Annotations	1.0	null
DA-35-DU85_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	1.9039
Periodontal Infection	DisGeNET Gene-Disease Associations	1.0	null
investigated	GeneRIF Biological Term Annotations	1.0	null
RAX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.9543
Neoplasm Metastasis	DisGeNET Gene-Phenotype Associations	1.0	null
accessory sex gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.478534
Helicobacter Pylori (H. Pylori) Infection In Conditions Classified Elsewhere And Of Unspecified Site	DisGeNET Gene-Disease Associations	1.0	null
mast	GeneRIF Biological Term Annotations	1.0	null
previously	GeneRIF Biological Term Annotations	1.0	null
Acute Appendicitis Nos (Disorder)	DisGeNET Gene-Disease Associations	1.0	null
hematopoietic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.655836
HT-29	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.80719
antagonist	GeneRIF Biological Term Annotations	1.0	null
Recurrent Otitis Media	DisGeNET Gene-Disease Associations	1.0	null
dermatitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.334315
stimulation	GeneRIF Biological Term Annotations	1.0	null
prolonged	GeneRIF Biological Term Annotations	1.0	null
layer IIIu of area 35r	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.88693
BATF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.6025
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-5973-01A-11R-1686-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
embryonic structure	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.066984
immortalized	GeneRIF Biological Term Annotations	1.0	null
synovium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.381003
DA-81-VY50_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	1.92725
pathogenic	GeneRIF Biological Term Annotations	1.0	null
epithelium	GeneRIF Biological Term Annotations	1.0	null
Trachea	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
HCC2279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28888
cytoplasmic part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.044588
JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	47.2597
respiratory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.185612
stratum basale	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.216325
salivary gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.575616
influence	GeneRIF Biological Term Annotations	1.0	null
peripheral blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.43146
Orchitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.019
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.821667
lung disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.055589
Extracellular space	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
antimicrobial	GeneRIF Biological Term Annotations	1.0	null
COR-L279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.833674
conjunctival epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.641643
Necrotizing Enterocolitis	DisGeNET Gene-Disease Associations	1.0	null
AB-09-EA37_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	2.55211
selectivity	GeneRIF Biological Term Annotations	1.0	null
MZ in orbital frontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	2.03759
demonstrate	GeneRIF Biological Term Annotations	1.0	null
bacterial vaginosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.570718
expressions	GeneRIF Biological Term Annotations	1.0	null
inducible	GeneRIF Biological Term Annotations	1.0	null
intron	GeneRIF Biological Term Annotations	1.0	null
epithelium	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
periodontium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.822757
cterminal	GeneRIF Biological Term Annotations	1.0	null
FOSL1::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.3635
Bb	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.314
wounding	GeneRIF Biological Term Annotations	1.0	null
Sarcoma_SARC_TCGA-DX-A8BH-01A-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
fetal membrane	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.145791
cxcr4	GeneRIF Biological Term Annotations	1.0	null
MIXL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.9235
defined	GeneRIF Biological Term Annotations	1.0	null
promoting	GeneRIF Biological Term Annotations	1.0	null
NCI-H1793	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.834709
G120	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.848616
Head and Neck squamous cell carcinoma_HNSC_TCGA-BA-A6DA-01A-31R-A31N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
monogenic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.043125
bone disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.055426
amniotic cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.341126
Sox7	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.7877
membrane part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.04112
bronchial epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.332294
MGE-Lateral region	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.29414
Dental Caries	DisGeNET Gene-Disease Associations	1.0	null
bone inflammation disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.213959
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
agent	GeneRIF Biological Term Annotations	1.0	null
GSE118077_1_v_2_sprr5_human	RummaGEO Gene Perturbation Signatures	-1.0	null
A-Netherlands-602-2009(H1N1)_7Hour_None_GSE40844	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.91751
hbd3	GeneRIF Biological Term Annotations	1.0	null
ZNF547	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.3753
conditions	GeneRIF Biological Term Annotations	1.0	null
manner	GeneRIF Biological Term Annotations	1.0	null
antiapoptotic	GeneRIF Biological Term Annotations	1.0	null
Skin	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
ZBTB7B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.1194
FE-36-JU27_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.312139
concentration	GeneRIF Biological Term Annotations	1.0	null
upregulation	GeneRIF Biological Term Annotations	1.0	null
crispatus	GeneRIF Biological Term Annotations	1.0	null
dermatitis	GeneRIF Biological Term Annotations	1.0	null
pore complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.121047
inner CP in superolateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	2.55304
vaginal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.448064
ZNF282	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.9818
Connective tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.28
invasion	GeneRIF Biological Term Annotations	1.0	null
DV-90	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.58302
factordependent	GeneRIF Biological Term Annotations	1.0	null
496100458_FWM_no dementia_no TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.13487
Rectum adenocarcinoma_READ_TCGA-EI-6512-01A-11R-1736-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
AA-18-GQ83_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.399303
HA-22-CY42_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	3.46437
OUMS-23	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.53465
facial nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.49952
middle ear	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.566428
sense organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.42993
immunities	GeneRIF Biological Term Annotations	1.0	null
demonstrated	GeneRIF Biological Term Annotations	1.0	null
principal sensory nucleus of trigeminal nerve	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.895908
bone	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.064769
periodontitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.830279
triggers	GeneRIF Biological Term Annotations	1.0	null
natural	GeneRIF Biological Term Annotations	1.0	null
eye	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060202
Hematopoietic system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
IgD immunoglobulin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.598
modulation	GeneRIF Biological Term Annotations	1.0	null
bind	GeneRIF Biological Term Annotations	1.0	null
lichen planus	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.353395
G protein-coupled receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.11
cytokine	GeneRIF Biological Term Annotations	1.0	null
degranulation	GeneRIF Biological Term Annotations	1.0	null
SCLC-21H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.38228
GCM1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.1601
more	GeneRIF Biological Term Annotations	1.0	null
nasopharynx	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.23176
tissue	GeneRIF Biological Term Annotations	1.0	null
appears	GeneRIF Biological Term Annotations	1.0	null
Whole body	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
CREB1	JASPAR Predicted Transcription Factor Targets	1.0	null
JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	47.2582
OV-90	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.933962
microscopy	GeneRIF Biological Term Annotations	1.0	null
NE-00-JZ19_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.374643
inhibitor	GeneRIF Biological Term Annotations	1.0	null
Chorioamnionitis	DisGeNET Gene-Phenotype Associations	1.0	null
ZNF677	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.1101
nmr	GeneRIF Biological Term Annotations	1.0	null
mucosal	GeneRIF Biological Term Annotations	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-TM-A7CA-01A-21R-A33Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.04796
increased mean platelet volume	IMPC Knockout Mouse Phenotypes	1.0	null
MDA-MB-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.47348
RT-4 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.834
reduced	GeneRIF Biological Term Annotations	1.0	null
BA-68-FJ41_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	6.56787
asia	GeneRIF Biological Term Annotations	1.0	null
SREBF1	JASPAR Predicted Transcription Factor Targets	1.0	null
pyloriinduced	GeneRIF Biological Term Annotations	1.0	null
Crohn'S Disease Of The Ileum	DisGeNET Gene-Disease Associations	1.0	null
Mouth disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.037
indicating	GeneRIF Biological Term Annotations	1.0	null
higher	GeneRIF Biological Term Annotations	1.0	null
SG in ventrolateral prefrontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.829847
profiles	GeneRIF Biological Term Annotations	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-CJ-4868-01A-01R-1305-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
tooth disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.799513
Disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.393
Brain Lower Grade Glioma_LGG_TCGA-TQ-A7RU-01A-21R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE222758_0_v_4_clofazimine_human	RummaGEO Drug Perturbation Signatures	1.0	null
S0-EE-WJKI_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	4.63091
rates	GeneRIF Biological Term Annotations	1.0	null
integument	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.23584
metastasis	GeneRIF Biological Term Annotations	1.0	null
intracellular membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
calciummediated	GeneRIF Biological Term Annotations	1.0	null
intracellular organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
reactions	GeneRIF Biological Term Annotations	1.0	null
including	GeneRIF Biological Term Annotations	1.0	null
histamine	GeneRIF Biological Term Annotations	1.0	null
kinase	GeneRIF Biological Term Annotations	1.0	null
pulmonary	GeneRIF Biological Term Annotations	1.0	null
PTGR3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.53292
gigantocellular reticular nuclei	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.45071
calcium	GeneRIF Biological Term Annotations	1.0	null
inhibits	GeneRIF Biological Term Annotations	1.0	null
freshly	GeneRIF Biological Term Annotations	1.0	null
exocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.525955
then	GeneRIF Biological Term Annotations	1.0	null
Amylin receptor complex 1	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.548
candidiasis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.213959
FOS::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.5618
RD-92-QT24_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.260768
elevated	GeneRIF Biological Term Annotations	1.0	null
coreceptor	GeneRIF Biological Term Annotations	1.0	null
NCI-H820	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.69608
EF-74-KW12_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.381384
Human Immunodeficiency Virus	DisGeNET Gene-Disease Associations	1.0	null
NOD-like receptor signaling pathway	KEGG Pathways 2026	1.0	null
filaggrin	GeneRIF Biological Term Annotations	1.0	null
mediator	GeneRIF Biological Term Annotations	1.0	null
MSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.545
LC-62-AU42_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.530029
surfaces	GeneRIF Biological Term Annotations	1.0	null
tonsil	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Calcitonin family receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.271
wall	GeneRIF Biological Term Annotations	1.0	null
NFE2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.1036
Pancreatic adenocarcinoma_PAAD_TCGA-IB-7646-01A-11R-2156-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
AE-51-ZO26_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.38208
OVCA 432	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.56647
status	GeneRIF Biological Term Annotations	1.0	null
determined	GeneRIF Biological Term Annotations	1.0	null
mta2	GeneRIF Biological Term Annotations	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-EJ-5502-01A-01R-1580-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
DA-35-DU85_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	4.25716
HCC1187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.848616
AF-41-QY60_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.723208
Arteriosclerosis	DisGeNET Gene-Disease Associations	1.0	null
PMC4498179-srep11671-s1.pdf-117-ZNF99_ZNF99	Rummagene Transcription Factor Associations 2026	1.0	null
SNAI3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.052
GSE228106_0_v_5_paclitaxel_human	RummaGEO Drug Perturbation Signatures	1.0	null
blood cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052522
acute myeloid leukemia cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.081207
beas-2b cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.726097
decreased circulating glycerol level	IMPC Knockout Mouse Phenotypes	1.0	null
bacterial-type flagellum hook	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.965
AD-00-WA10_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	1.33072
inner portion of lateral ganglionic eminence	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.32822
positively	GeneRIF Biological Term Annotations	1.0	null
middle ear cholesteatoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.76921
nonlesional	GeneRIF Biological Term Annotations	1.0	null
osteonecrosis	GeneRIF Biological Term Annotations	1.0	null
noninflamed	GeneRIF Biological Term Annotations	1.0	null
MZ in posterior parahippocampal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.04979
organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
multifunctional	GeneRIF Biological Term Annotations	1.0	null
sweat gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.169485
Cervicovaginal cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.028
strongly	GeneRIF Biological Term Annotations	1.0	null
without	GeneRIF Biological Term Annotations	1.0	null
ETV2::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.7968
bacterial infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.342006
peptides	GeneRIF Biological Term Annotations	1.0	null
historical	GeneRIF Biological Term Annotations	1.0	null
cell part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.423174
ZNF652	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.9425
viscus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.409731
fully	GeneRIF Biological Term Annotations	1.0	null
DLX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.6686
cellular_component	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.081865
lung	GeneRIF Biological Term Annotations	1.0	null
Malignant Head And Neck Neoplasm	DisGeNET Gene-Disease Associations	1.0	null
bacteria	GeneRIF Biological Term Annotations	1.0	null
Autosomal recessive congenital ichthyosis 1	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.189
allergic	GeneRIF Biological Term Annotations	1.0	null
extracellular region	LOCATE Predicted Protein Localization Annotations	1.0	null
inhibit	GeneRIF Biological Term Annotations	1.0	null
Appendicitis	DisGeNET Gene-Disease Associations	1.0	null
496100472_PCx_possible Alzheimer's disease_TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.25669
carriers	GeneRIF Biological Term Annotations	1.0	null
birth	GeneRIF Biological Term Annotations	1.0	null
subgroups	GeneRIF Biological Term Annotations	1.0	null
lymph node	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.428018
Irf1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	48.9936
Bladder Urothelial Carcinoma_BLCA_TCGA-BL-A5ZZ-01A-31R-A30C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
one	GeneRIF Biological Term Annotations	1.0	null
BATF::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.6868
CE-18-AP85_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	1.22674
separated	GeneRIF Biological Term Annotations	1.0	null
Sox5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.1935
increased bone mineral content	MGI Mouse Phenotype Associations 2023	1.0	null
SP in caudal hippocampal proper	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.48165
independent	GeneRIF Biological Term Annotations	1.0	null
molecules	GeneRIF Biological Term Annotations	1.0	null
tlr1	GeneRIF Biological Term Annotations	1.0	null
reason	GeneRIF Biological Term Annotations	1.0	null
Epithelium	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
outer CP in caudal perirhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.17075
bone	GeneRIF Biological Term Annotations	1.0	null
JHH-5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14493
BA-84-TD72_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	1.43416
nongonococcal	GeneRIF Biological Term Annotations	1.0	null
preosteoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.189222
articular	GeneRIF Biological Term Annotations	1.0	null
NCI-H1781	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.3151
challenge	GeneRIF Biological Term Annotations	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-F7-A50J-01A-21R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
protects	GeneRIF Biological Term Annotations	1.0	null
Bacteremia	DisGeNET Gene-Disease Associations	1.0	null
machinery	GeneRIF Biological Term Annotations	1.0	null
bonding	GeneRIF Biological Term Annotations	1.0	null
albicans	GeneRIF Biological Term Annotations	1.0	null
carboxyterminal	GeneRIF Biological Term Annotations	1.0	null
MEIS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.847
respiratory system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
NFYA	JASPAR Predicted Transcription Factor Targets	1.0	null
lepromatous leprosy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.488169
activates	GeneRIF Biological Term Annotations	1.0	null
whole body	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
granulocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.664775
differential	GeneRIF Biological Term Annotations	1.0	null
dynamics	GeneRIF Biological Term Annotations	1.0	null
Tracheal epithelium	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Ankylosing Spondylitis	DisGeNET Gene-Disease Associations	1.0	null
placenta disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.203604
JDP2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	47.7813
localized	GeneRIF Biological Term Annotations	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-22-0944-01A-01R-0692-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Integument	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
PBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.6667
contribute	GeneRIF Biological Term Annotations	1.0	null
DC-17-ZB19_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.269556
humanbetadefensins13	GeneRIF Biological Term Annotations	1.0	null
mucous gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.149889
internal female genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052116
FOSB::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	49.7448
HNF1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.8577
Gingivitis	DisGeNET Gene-Disease Associations	1.0	null
resolution	GeneRIF Biological Term Annotations	1.0	null
intramolecular	GeneRIF Biological Term Annotations	1.0	null
496100466_PCx_probable Alzheimer's disease_no TBI_89_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.08771
layer III of rostral entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.55871
nasal mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.250301
assessed	GeneRIF Biological Term Annotations	1.0	null
chemokine	GeneRIF Biological Term Annotations	1.0	null
respiratory mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.225395
epidermidis	GeneRIF Biological Term Annotations	1.0	null
isothermal	GeneRIF Biological Term Annotations	1.0	null
RB-34-TO07_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.266257
outer CP in primary auditory cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.904208
SP in dorsomedial frontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.05712
keratinocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.28951
Candidiasis	DisGeNET Gene-Disease Associations	1.0	null
amnion epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.196804
HOXB5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.5796
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-C5-A901-01A-11R-A37O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
golgi apparatus	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
bronchiole	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.169672
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-FU-A5XV-01A-11R-A28H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Insulin-Like Growth Factor I Deficiency	DisGeNET Gene-Disease Associations	1.0	null
OCI-AML2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.97673
porphyromonas	GeneRIF Biological Term Annotations	1.0	null
HCC70	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.81539
fashion	GeneRIF Biological Term Annotations	1.0	null
biological	GeneRIF Biological Term Annotations	1.0	null
membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.046714
Gastric epithelium cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.632
PMC10363146-41598_2023_38681_MOESM1_ESM.pdf-398-ZEB1_ZEB1	Rummagene Transcription Factor Associations 2026	1.0	null
myositis	GeneRIF Biological Term Annotations	1.0	null
lower (caudal) rhombic lip	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.08875
Staphylococcal Infections	HuGE Navigator Gene-Phenotype Associations	1.0	null
lead	GeneRIF Biological Term Annotations	1.0	null
tissuespecific	GeneRIF Biological Term Annotations	1.0	null
adhesion	GeneRIF Biological Term Annotations	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CN-4734-01A-01R-1436-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
il8	GeneRIF Biological Term Annotations	1.0	null
culture supernatant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.48048
submucosal gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.297089
NCI-H2198	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.966442
virulence	GeneRIF Biological Term Annotations	1.0	null
initial	GeneRIF Biological Term Annotations	1.0	null
MAFG::NFE2L1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.267
TYK-NU.CP-R	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0169
keratinocyte cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.60893
Immune system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Malignant Tumor Of Cervix	DisGeNET Gene-Disease Associations	1.0	null
induces	GeneRIF Biological Term Annotations	1.0	null
dental caries	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.386308
structure	GeneRIF Biological Term Annotations	1.0	null
Urinary bladder transitional cell carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.749
specific	GeneRIF Biological Term Annotations	1.0	null
external encapsulating structure	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.614165
Influenza	DisGeNET Gene-Disease Associations	1.0	null
inverse	GeneRIF Biological Term Annotations	1.0	null
male reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056968
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-LP-A4AU-01A-32R-A32Y-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
OPM-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.901116
decreased	GeneRIF Biological Term Annotations	1.0	null
TRPS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.8974
melanocyte	GeneRIF Biological Term Annotations	1.0	null
worldwide	GeneRIF Biological Term Annotations	1.0	null
sustained	GeneRIF Biological Term Annotations	1.0	null
Oropharyngeal Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
FOSL1::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.89
system	GeneRIF Biological Term Annotations	1.0	null
localisations	GeneRIF Biological Term Annotations	1.0	null
gingival epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.930193
squamous epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.067204
EA-18-FP00_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.29541
represents	GeneRIF Biological Term Annotations	1.0	null
MAF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.8835
LMX1A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.7357
osteomyelitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.745578
inclusion	GeneRIF Biological Term Annotations	1.0	null
healing	GeneRIF Biological Term Annotations	1.0	null
VZ in thalamic region	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-2.26441
ZF-10-JD55_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.25565
Ebolavirus(ZEBOV)_6day_PBMCs_rNAPc2treated_21987740_GSE24943	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	0.067191
homonuclear	GeneRIF Biological Term Annotations	1.0	null
Cervix Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
isoforms	GeneRIF Biological Term Annotations	1.0	null
pneumococci	GeneRIF Biological Term Annotations	1.0	null
SRF	JASPAR Predicted Transcription Factor Targets	1.0	null
gingival fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.754124
Disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.379
trachea	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
deficiency	GeneRIF Biological Term Annotations	1.0	null
coding	GeneRIF Biological Term Annotations	1.0	null
Gingiva	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.148
Kidney Chromophobe_KICH_TCGA-KO-8405-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Kidney renal papillary cell carcinoma_KIRP_TCGA-BQ-7045-01A-31R-1965-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
decreased circulating glycerol level	MGI Mouse Phenotype Associations 2023	1.0	null
Vaginal epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.97
lower respiratory tract disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.053654
skin epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.494136
neutral	GeneRIF Biological Term Annotations	1.0	null
corticosteroids	GeneRIF Biological Term Annotations	1.0	null
IM-95	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.84041
GBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.4814
PB-09-OE00_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	5.11482
lung epithelium	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Genetic Predisposition to Disease	HuGE Navigator Gene-Phenotype Associations	1.0	null
hsa-miR-380	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
corresponding	GeneRIF Biological Term Annotations	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-HC-7745-01A-11R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
kidney	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054055
JD-62-HR05_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.539951
PRRX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.6884
FOXP1-21924763-HESC-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
AA-99-HG96_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.298898
cell part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.057788
linear	GeneRIF Biological Term Annotations	1.0	null
RORC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.0762
Facioscapulohumeral muscular dystrophy 3	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.555
charged	GeneRIF Biological Term Annotations	1.0	null
BC-40-TU13_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.324069
otitis media	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.839296
reaction	GeneRIF Biological Term Annotations	1.0	null
POLR2A	ENCODE Transcription Factor Targets	1.0	null
Pachyonychia congenita	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.133
level	GeneRIF Biological Term Annotations	1.0	null
binds	GeneRIF Biological Term Annotations	1.0	null
PF-59-CY33_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.749664
cell	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
ISL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.7507
SK-MM-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.96195
BE-57-VZ17_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.222781
saltdependent	GeneRIF Biological Term Annotations	1.0	null
residues	GeneRIF Biological Term Annotations	1.0	null
humans	GeneRIF Biological Term Annotations	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-F7-A50G-01A-11R-A266-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
TE-671 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.568
psoriasin	GeneRIF Biological Term Annotations	1.0	null
NVT complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.829
AC-31-PL89_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.268865
structures	GeneRIF Biological Term Annotations	1.0	null
acute myeloid leukemia cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.075294
myeloid leukemia cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.063888
Prostate adenocarcinoma_PRAD_TCGA-EJ-7325-01B-11R-A32O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
promoter	GeneRIF Biological Term Annotations	1.0	null
GE-53-SM76_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.807931
Immune system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.22
moderately	GeneRIF Biological Term Annotations	1.0	null
fibroblasts	GeneRIF Biological Term Annotations	1.0	null
gingiva	GeneRIF Biological Term Annotations	1.0	null
Xeroderma Pigmentosum	DisGeNET Gene-Disease Associations	1.0	null
lung epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.242054
LA-42-ER00_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.394932
ETV2::HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.206
Bladder Urothelial Carcinoma_BLCA_TCGA-G2-A2EJ-01A-11R-A180-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CAL 54	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.949405
Dermatitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.163
techniques	GeneRIF Biological Term Annotations	1.0	null
tooth	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.783972
Staphylococcus aureus infection	KEGG Pathways 2026	1.0	null
Transitional cell carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.746
Head and Neck squamous cell carcinoma_HNSC_TCGA-MT-A51X-01A-11R-A266-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Psoriasis	DisGeNET Gene-Disease Associations	1.0	null
three	GeneRIF Biological Term Annotations	1.0	null
improves	GeneRIF Biological Term Annotations	1.0	null
ND-68-CU31_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.240194
east	GeneRIF Biological Term Annotations	1.0	null
KARPAS-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32289
chorioamnionitis	GeneRIF Biological Term Annotations	1.0	null
production	GeneRIF Biological Term Annotations	1.0	null
cholesteatoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.510728
QE-79-XO29_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.261991
squamous	GeneRIF Biological Term Annotations	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-DK-A3IM-01A-11R-A20F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
murine	GeneRIF Biological Term Annotations	1.0	null
orthologs	GeneRIF Biological Term Annotations	1.0	null
BICR 22	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.96195
protein3	GeneRIF Biological Term Annotations	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-A45Q-01A-11R-A24H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Cornified envelope	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.433
upper respiratory tract disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.054002
suggesting	GeneRIF Biological Term Annotations	1.0	null
MEIS2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.3006
PMC8766486-42003_2021_2990_MOESM3_ESM.xlsx-ST18-Supplementary_Data_18_Gene_burden_for_deletions_by_subtype_ST18	Rummagene Transcription Factor Associations 2026	1.0	null
TEAD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.4531
least	GeneRIF Biological Term Annotations	1.0	null
Myeloid dendritic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.953
adhesin	GeneRIF Biological Term Annotations	1.0	null
processes	GeneRIF Biological Term Annotations	1.0	null
rather	GeneRIF Biological Term Annotations	1.0	null
while	GeneRIF Biological Term Annotations	1.0	null
FOSL2::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.7314
BT-20	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.34168
s100a11	GeneRIF Biological Term Annotations	1.0	null
cell culture	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.58322
NCI-H209	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.58302
intracellular organelle lumen	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
SPI1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
did	GeneRIF Biological Term Annotations	1.0	null
increased grip strength	MGI Mouse Phenotype Associations 2023	1.0	null
ZNF136	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.8654
membranes	GeneRIF Biological Term Annotations	1.0	null
cartilage	GeneRIF Biological Term Annotations	1.0	null
inflammation	GeneRIF Biological Term Annotations	1.0	null
Celiac Disease	DisGeNET Gene-Disease Associations	1.0	null
effects	GeneRIF Biological Term Annotations	1.0	null
MDA-MB-134-VI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.971858
ZR-75-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.867479
HS 940.T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.48323
TP53	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.2356
functions	GeneRIF Biological Term Annotations	1.0	null
PMC7498599-41467_2020_18508_MOESM11_ESM.xlsx-ICM_JUN-Unnamed_2_JUN	Rummagene Transcription Factor Associations 2026	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-KT-A74X-01A-11R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
VAX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.2952
solitary nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.04864
pylori	GeneRIF Biological Term Annotations	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-UF-A7JC-01A-21R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
betadefensins	GeneRIF Biological Term Annotations	1.0	null
rhinitis	GeneRIF Biological Term Annotations	1.0	null
blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.690859
Prostate adenocarcinoma_PRAD_TCGA-EJ-5501-01A-01R-1580-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
pneumonia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.172544
lipopolysaccharide	GeneRIF Biological Term Annotations	1.0	null
Uroepithelial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.761
solution	GeneRIF Biological Term Annotations	1.0	null
rare	GeneRIF Biological Term Annotations	1.0	null
PMC10794847-mmc2.xlsx-PBRM1_KD_up-Table_S1_Differentially_expressed_genes_with_PBRM1_knockdown_in_the_progenitor_state_Related_to_Figure_1_AR	Rummagene Transcription Factor Associations 2026	1.0	null
influenced	GeneRIF Biological Term Annotations	1.0	null
monomeric	GeneRIF Biological Term Annotations	1.0	null
ZNF24	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.4887
FOS	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.0562
bd3	GeneRIF Biological Term Annotations	1.0	null
IM-95M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.58302
OCI-LY-10	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.15484
DA-27-BW40_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.334286
origin	GeneRIF Biological Term Annotations	1.0	null
hbd123	GeneRIF Biological Term Annotations	1.0	null
shed	GeneRIF Biological Term Annotations	1.0	null
cell wall	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.647433
Rectum adenocarcinoma_READ_TCGA-G5-6235-01A-11R-1736-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
pseudocysts	GeneRIF Biological Term Annotations	1.0	null
structural	GeneRIF Biological Term Annotations	1.0	null
monocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.116562
VA-06-DB75_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	2.0321
NCI-H1092	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.39526
Crohn Disease	DisGeNET Gene-Disease Associations	1.0	null
HCC2935	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03892
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.848616
VZ in dorsomedial frontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.19845
adaptive	GeneRIF Biological Term Annotations	1.0	null
skin	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.04664
mycosis	GeneRIF Biological Term Annotations	1.0	null
epidermal	GeneRIF Biological Term Annotations	1.0	null
killing	GeneRIF Biological Term Annotations	1.0	null
OE-31-YC41_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.231119
than	GeneRIF Biological Term Annotations	1.0	null
ZD-85-ND87_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.927463
amnion epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.20436
embryonic kidney cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.218613
cytoplasmic membrane-bounded vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.059606
Autoimmune disease of skin and connective tissue	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.517
intracellular membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.046866
hydrophobic	GeneRIF Biological Term Annotations	1.0	null
UNCX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.9246
showed	GeneRIF Biological Term Annotations	1.0	null
motifs	GeneRIF Biological Term Annotations	1.0	null
partially	GeneRIF Biological Term Annotations	1.0	null
reveals	GeneRIF Biological Term Annotations	1.0	null
Lung epithelium	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Thap11	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	25.2939
alimentary canal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.370121
hemagglutinin	GeneRIF Biological Term Annotations	1.0	null
NCI-H292	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09094
SOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.893
LHX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.4526
Hmx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	31.6954
bronchial epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.258917
arrangement	GeneRIF Biological Term Annotations	1.0	null
human amniotic epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.628293
Ulcerative Colitis	DisGeNET Gene-Disease Associations	1.0	null
hivinfected	GeneRIF Biological Term Annotations	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-EB-A57M-01A-51R-A311-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cycledependent	GeneRIF Biological Term Annotations	1.0	null
SP in subgenual (subcallosal) cingulate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.38218
suppressed	GeneRIF Biological Term Annotations	1.0	null
deficient	GeneRIF Biological Term Annotations	1.0	null
wound fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.439507
CD40 receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.552
Amylin receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.459
conjunctiva	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.720755
mapping	GeneRIF Biological Term Annotations	1.0	null
KMS-34	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.833674
adjacent	GeneRIF Biological Term Annotations	1.0	null
light	GeneRIF Biological Term Annotations	1.0	null
496100426_PCx_no dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.50086
influenza	GeneRIF Biological Term Annotations	1.0	null
bronchoalveolar system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.512564
experimental	GeneRIF Biological Term Annotations	1.0	null
exon	GeneRIF Biological Term Annotations	1.0	null
erk12	GeneRIF Biological Term Annotations	1.0	null
DB	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1075
effect	GeneRIF Biological Term Annotations	1.0	null
stratum lacunosum-moleculare of caudal CA1	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.01663
CX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.80719
polymorphisms	GeneRIF Biological Term Annotations	1.0	null
disulfide	GeneRIF Biological Term Annotations	1.0	null
GATA6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.1107
AA-52-JS03_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.2138
signal recognition particle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.336996
oral squamous cell carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.278955
layer I of piriform cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.89057
lateral hemisphere of cerebellum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.08583
gingival	GeneRIF Biological Term Annotations	1.0	null
langerhans cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.33413
Prostate adenocarcinoma_PRAD_TCGA-G9-6379-01A-11R-A31N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SG in primary auditory cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.09085
will	GeneRIF Biological Term Annotations	1.0	null
inner SZ in midlateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.9523
Cervical Cancer	DisGeNET Gene-Disease Associations	1.0	null
Gingivitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.042
cystic fibrosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.286877
modern	GeneRIF Biological Term Annotations	1.0	null
Uterine Carcinosarcoma_UCS_TCGA-N5-A4RF-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
candida	GeneRIF Biological Term Annotations	1.0	null
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-C5-A7CH-01A-11R-A33Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
DF-75-OU25_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.541704
airway	GeneRIF Biological Term Annotations	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-6955-11A-01R-2016-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
tracheal epithelium	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
KC-32-GO33_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.643177
arthritis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.097079
lymphatic	GeneRIF Biological Term Annotations	1.0	null
cholesteatoma of middle ear	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.76921
oral cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.228234
primary bacterial infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.354868
QA-07-KC40_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.489365
oral squamous cell carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.256902
Hepm	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.867
plasma membrane part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.042214
receptors	GeneRIF Biological Term Annotations	1.0	null
molecular	GeneRIF Biological Term Annotations	1.0	null
GSE176144_0_v_1_zfc3h1_human	RummaGEO Gene Perturbation Signatures	1.0	null
fluid	GeneRIF Biological Term Annotations	1.0	null
adult stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.073194
PORCN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.02534
PMC7498599-41467_2020_18508_MOESM11_ESM.xlsx-ICM_JUN-Unnamed_3_JUN	Rummagene Transcription Factor Associations 2026	1.0	null
BICR 31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.897186
DC-51-WE27_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.393295
betadefensin	GeneRIF Biological Term Annotations	1.0	null
Stat5a::Stat5b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	20.0542
DUXA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.6508
mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.874439
Stat5b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	26.9043
Chromosome 17q11.2 deletion syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.091
enhances	GeneRIF Biological Term Annotations	1.0	null
lactobacillus	GeneRIF Biological Term Annotations	1.0	null
skin	GeneRIF Biological Term Annotations	1.0	null
signal recognition particle, endoplasmic reticulum targeting	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.502693
skeletal system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056652
hyphalinvasiondependent	GeneRIF Biological Term Annotations	1.0	null
protected	GeneRIF Biological Term Annotations	1.0	null
francisella	GeneRIF Biological Term Annotations	1.0	null
carrier	GeneRIF Biological Term Annotations	1.0	null
camp	GeneRIF Biological Term Annotations	1.0	null
cationic	GeneRIF Biological Term Annotations	1.0	null
orthologue	GeneRIF Biological Term Annotations	1.0	null
lps	GeneRIF Biological Term Annotations	1.0	null
mobilization	GeneRIF Biological Term Annotations	1.0	null
under	GeneRIF Biological Term Annotations	1.0	null
corneal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.433021
normal	GeneRIF Biological Term Annotations	1.0	null
rubrum	GeneRIF Biological Term Annotations	1.0	null
osteoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.19188
Head and Neck squamous cell carcinoma_HNSC_TCGA-QK-A6II-01A-11R-A31N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
gastrointestinal tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.338545
THP-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.58302
Generalized Periodontitis	DisGeNET Gene-Disease Associations	1.0	null
vivo	GeneRIF Biological Term Annotations	1.0	null
Skin disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.389
bisphosphonateassociated	GeneRIF Biological Term Annotations	1.0	null
periodontally	GeneRIF Biological Term Annotations	1.0	null
Malignant Transformation	DisGeNET Gene-Phenotype Associations	1.0	null
controls	GeneRIF Biological Term Annotations	1.0	null
496100418_TCx_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	7.65926
lung cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.079841
after	GeneRIF Biological Term Annotations	1.0	null
amniotic	GeneRIF Biological Term Annotations	1.0	null
medioventral part of putamen	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.68082
chemoattractant	GeneRIF Biological Term Annotations	1.0	null
Myocarditis	DisGeNET Gene-Disease Associations	1.0	null
immunosuppressive	GeneRIF Biological Term Annotations	1.0	null
connective tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.051448
CHK1_KD_GSE54268_665_human_MCF-10A	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
Head And Neck Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
macrophage	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.378748
Bladder Urothelial Carcinoma_BLCA_TCGA-UY-A78L-01A-12R-A33J-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Corneocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.607
pattern	GeneRIF Biological Term Annotations	1.0	null
Localized Scleroderma	DisGeNET Gene-Disease Associations	1.0	null
MV-4-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07647
Crohn'S Disease Of Large Bowel	DisGeNET Gene-Disease Associations	1.0	null
eyelid	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.651371
elucidate	GeneRIF Biological Term Annotations	1.0	null
spectroscopy	GeneRIF Biological Term Annotations	1.0	null
mouth disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.759416
Mixed Salivary Gland Tumor	DisGeNET Gene-Disease Associations	1.0	null
frequency	GeneRIF Biological Term Annotations	1.0	null
ZIM3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.9261
USF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.2703
populations	GeneRIF Biological Term Annotations	1.0	null
hsa-miR-3653	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
chorioamnionitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.387794
titration	GeneRIF Biological Term Annotations	1.0	null
cytoplasm	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
SUIT-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.867479
DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.0956
ALX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.9932
agrp	GeneRIF Biological Term Annotations	1.0	null
bonds	GeneRIF Biological Term Annotations	1.0	null
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-G8-6326-01A-11R-2213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
medial subdivision of central nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-2.01453
monocyte	GeneRIF Biological Term Annotations	1.0	null
chemoattractants	GeneRIF Biological Term Annotations	1.0	null
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-MA-AA3Y-01A-11R-A38B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
DB-56-XL71_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.364453
CP in midlateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	2.48738
monolayers	GeneRIF Biological Term Annotations	1.0	null
Carcinogenesis	DisGeNET Gene-Phenotype Associations	1.0	null
NUP58	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.07763
ear	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.088236
organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.043808
lowering	GeneRIF Biological Term Annotations	1.0	null
organism form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.370496
flux	GeneRIF Biological Term Annotations	1.0	null
BATF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.8449
Prostate adenocarcinoma_PRAD_TCGA-CH-5740-01A-11R-1580-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
outermembrane	GeneRIF Biological Term Annotations	1.0	null
activated	GeneRIF Biological Term Annotations	1.0	null
autosomal genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.043745
lung	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.414673
PMC10363146-41598_2023_38681_MOESM1_ESM.pdf-466-HMGA2_HMGA2	Rummagene Transcription Factor Associations 2026	1.0	null
AA-62-HP31_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	2.11662
epidermis	GeneRIF Biological Term Annotations	1.0	null
496100469_TCx_no dementia_TBI_89_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.99952
integumentary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.568775
dual	GeneRIF Biological Term Annotations	1.0	null
layer VI of area 35c	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.14433
epithelia	GeneRIF Biological Term Annotations	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-HT-A618-01A-11R-A29R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cytokines	GeneRIF Biological Term Annotations	1.0	null
Oropharyngeal Candidiasis	DisGeNET Gene-Disease Associations	1.0	null
persons	GeneRIF Biological Term Annotations	1.0	null
essential	GeneRIF Biological Term Annotations	1.0	null
S100A9 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.689
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-7183-01A-11R-2016-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
keratinocyte	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
neutrophils	GeneRIF Biological Term Annotations	1.0	null
only	GeneRIF Biological Term Annotations	1.0	null
GBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.0535
Psoriasis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.5
Mecom	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	23.3704
persistent	GeneRIF Biological Term Annotations	1.0	null
SE-15-AV21_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.542552
preincubation	GeneRIF Biological Term Annotations	1.0	null
different	GeneRIF Biological Term Annotations	1.0	null
HOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.1125
il18	GeneRIF Biological Term Annotations	1.0	null
defensins	GeneRIF Biological Term Annotations	1.0	null
GSE118077_4_v_2_sprr5_human	RummaGEO Gene Perturbation Signatures	-1.0	null
pathophysiology	GeneRIF Biological Term Annotations	1.0	null
CB-88-LG34_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.728629
does	GeneRIF Biological Term Annotations	1.0	null
PMC4494966__F4	PFOCR Pathway Figure Associations 2023	1.0	null
squamous cell carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.070202
ml-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.274394
teeth hard tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.235964
differ	GeneRIF Biological Term Annotations	1.0	null
Primary immunodeficiency disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.286
Musculoskeletal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.296
XD-08-ZW85_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.226009
result	GeneRIF Biological Term Annotations	1.0	null
beta	GeneRIF Biological Term Annotations	1.0	null
Necrotizing ulcerative gingivitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.014
HS 852.T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.915584
HCC12	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.58302
VZ in dorsomedial parietal cortex (area 7m)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.20325
copynumber	GeneRIF Biological Term Annotations	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CR-6491-01A-11R-1873-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
matrices	GeneRIF Biological Term Annotations	1.0	null
external female genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.225395
Lung squamous cell carcinoma_LUSC_TCGA-33-4589-01A-01R-1443-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
beta13exoglucanase	GeneRIF Biological Term Annotations	1.0	null
Golgi apparatus	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
colonic epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.344449
G61	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.36814
ME-31-RM40_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.233991
ribonucleoprotein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.057102
Hmx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	31.4803
CP in caudal hippocampus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.51391
placenta	GeneRIF Biological Term Annotations	1.0	null
variants	GeneRIF Biological Term Annotations	1.0	null
OCI-AML5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.910335
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-IR-A3LL-01A-11R-A213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
S100A8 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.689
lamina epithelialis mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.295297
hiv1	GeneRIF Biological Term Annotations	1.0	null
infection	GeneRIF Biological Term Annotations	1.0	null
inhibited	GeneRIF Biological Term Annotations	1.0	null
BXPC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.882935
nasal	GeneRIF Biological Term Annotations	1.0	null
G140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.882935
tuberculosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.226262
Rectum adenocarcinoma_READ_TCGA-AG-3902-01A-01R-A32Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Tracheal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.093
GA-87-BR97_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	1.41401
opportunistic mycosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.110012
caused	GeneRIF Biological Term Annotations	1.0	null
parasubicular cortex (parasubiculum)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.52481
FOS::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.9479
myeloid leukemia cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.067737
ZSCAN31	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.7857
synovial tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.322779
Pheochromocytoma and Paraganglioma_PCPG_TCGA-SQ-A6I4-01A-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
involves	GeneRIF Biological Term Annotations	1.0	null
deep layers of rostral entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.52753
addition	GeneRIF Biological Term Annotations	1.0	null
egfr	GeneRIF Biological Term Annotations	1.0	null
induced	GeneRIF Biological Term Annotations	1.0	null
epidemics	GeneRIF Biological Term Annotations	1.0	null
small intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.079249
mrnaexpression	GeneRIF Biological Term Annotations	1.0	null
NR1I3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.2228
problems	GeneRIF Biological Term Annotations	1.0	null
unusually	GeneRIF Biological Term Annotations	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CQ-7069-01A-11R-2403-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
larva	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.111402
Necrotizing Enterocolitis In Fetus Or Newborn	DisGeNET Gene-Disease Associations	1.0	null
Buffy coat cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.678
male reproductive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059943
Prostate adenocarcinoma_PRAD_TCGA-HC-8261-01A-11R-2263-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
protecting	GeneRIF Biological Term Annotations	1.0	null
epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.761155
respiratory epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.584422
surveillance	GeneRIF Biological Term Annotations	1.0	null
ISX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.746
salivary duct	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.425344
membrane attack complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.159462
somatic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.323509
cytoplasmic part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
BACH2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	70.4633
absence	GeneRIF Biological Term Annotations	1.0	null
tendon	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.295655
SREBF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.3138
Foxo1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	16.1577
Stratum spinosum	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
involvement	GeneRIF Biological Term Annotations	1.0	null
secrete	GeneRIF Biological Term Annotations	1.0	null
496100460_TCx_possible Alzheimer's disease_TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.60397
such	GeneRIF Biological Term Annotations	1.0	null
depends	GeneRIF Biological Term Annotations	1.0	null
upregulated	GeneRIF Biological Term Annotations	1.0	null
Kidney Chromophobe_KICH_TCGA-KN-8428-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Cholesteatoma	DisGeNET Gene-Disease Associations	1.0	null
copies	GeneRIF Biological Term Annotations	1.0	null
Mesothelioma_MESO_TCGA-LK-A4O2-01A-11R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
trichophytum	GeneRIF Biological Term Annotations	1.0	null
undescribed	GeneRIF Biological Term Annotations	1.0	null
esophagus	GeneRIF Biological Term Annotations	1.0	null
aspects	GeneRIF Biological Term Annotations	1.0	null
ccr7	GeneRIF Biological Term Annotations	1.0	null
hsa-miR-3910	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
epidermal cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.17181
stratum germinativum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.962039
upon	GeneRIF Biological Term Annotations	1.0	null
hybridization	GeneRIF Biological Term Annotations	1.0	null
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-EK-A2RE-01A-11R-A18M-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GCM2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.5992
gingivalis	GeneRIF Biological Term Annotations	1.0	null
copy	GeneRIF Biological Term Annotations	1.0	null
reduces	GeneRIF Biological Term Annotations	1.0	null
496100367_FWM_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.68243
496100409_FWM_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.07917
JUN::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.9422
Dermatitis	DisGeNET Gene-Disease Associations	1.0	null
Idiopathic Inflammatory Myopathies	DisGeNET Gene-Disease Associations	1.0	null
periosteum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.166511
sporadic	GeneRIF Biological Term Annotations	1.0	null
urinary tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052966
SW 1116	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.45217
bronchoalveolar system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
IGR-37	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.834709
HCC1937	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.837029
inhibiting	GeneRIF Biological Term Annotations	1.0	null
biosynthesis	GeneRIF Biological Term Annotations	1.0	null
Polymorphous Light Eruption	DisGeNET Gene-Disease Associations	1.0	null
MCAS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.83653
mdamb134vi	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.829
ELK1::SREBF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.9478
increased mean platelet volume	MGI Mouse Phenotype Associations 2023	1.0	null
antagonists	GeneRIF Biological Term Annotations	1.0	null
intracellular part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.16342
PMC11825621-210_2024_3353_MOESM2_ESM.xlsx-AR-IL13_AR	Rummagene Transcription Factor Associations 2026	1.0	null
overexpressed	GeneRIF Biological Term Annotations	1.0	null
inhibitors	GeneRIF Biological Term Annotations	1.0	null
enhance	GeneRIF Biological Term Annotations	1.0	null
resident	GeneRIF Biological Term Annotations	1.0	null
keratinocyte	GeneRIF Biological Term Annotations	1.0	null
colon	GeneRIF Biological Term Annotations	1.0	null
Bacterial Vaginosis	DisGeNET Gene-Disease Associations	1.0	null
BACH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.9669
acquired	GeneRIF Biological Term Annotations	1.0	null
DC-22-OP01_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.273339
defense	GeneRIF Biological Term Annotations	1.0	null
oral epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.724041
type	GeneRIF Biological Term Annotations	1.0	null
dorsal lateral geniculate nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.980209
animal	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Gingival epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.052
20460173-ImmPortChemokines	GeneSigDB Published Gene Signatures	1.0	null
KURAMOCHI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.45263
FOSL1::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.4681
lateral nucleus of pulvinar	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.00778
s100a7	GeneRIF Biological Term Annotations	1.0	null
induction	GeneRIF Biological Term Annotations	1.0	null
compared	GeneRIF Biological Term Annotations	1.0	null
gastrointestinal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.416147
IZ in posteroinferior (ventral) parietal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.962766
Complex laminated body	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.572
Lung	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
middle ear disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.951604
responses	GeneRIF Biological Term Annotations	1.0	null
head and neck squamous cell carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.073271
act	GeneRIF Biological Term Annotations	1.0	null
NCI-H2804	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.966442
key	GeneRIF Biological Term Annotations	1.0	null
membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.194698
GSE111061_1_v_0_tofacitinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Laminated body	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.56
AA-68-OJ16_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	4.40277
space	GeneRIF Biological Term Annotations	1.0	null
DA-07-LL18_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	2.22061
correlated	GeneRIF Biological Term Annotations	1.0	null
step	GeneRIF Biological Term Annotations	1.0	null
biofilm matrix	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.34392
perinuclear region of cytoplasm	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.18093
Celiac Disease	HuGE Navigator Gene-Phenotype Associations	1.0	null
Kidney Chromophobe_KICH_TCGA-KM-8476-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
embryonic cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.068402
AB-18-YN11_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	2.69047
ZNF76	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.8046
PAX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.7875
IgD B cell receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.614
SNU-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.900069
oral	GeneRIF Biological Term Annotations	1.0	null
their	GeneRIF Biological Term Annotations	1.0	null
tlr2	GeneRIF Biological Term Annotations	1.0	null
kidney cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059927
lichen disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.352659
CHAGO-K-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09094
central nucleus of inferior colliculus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.79794
areas	GeneRIF Biological Term Annotations	1.0	null
Hs-578Bst cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.748
simulations	GeneRIF Biological Term Annotations	1.0	null
respiratory system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.491791
RERF-LC-KJ	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.56647
ll37hbd3	GeneRIF Biological Term Annotations	1.0	null
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.09827
eye disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.045655
FA-36-VA24_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.214112
20460173-ImmPortAntimicrobials	GeneSigDB Published Gene Signatures	1.0	null
link	GeneRIF Biological Term Annotations	1.0	null
20460173-ImmPortCytokines	GeneSigDB Published Gene Signatures	1.0	null
keratitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.560227
phosphorylation	GeneRIF Biological Term Annotations	1.0	null
isolated	GeneRIF Biological Term Annotations	1.0	null
recombinant	GeneRIF Biological Term Annotations	1.0	null
lower	GeneRIF Biological Term Annotations	1.0	null
SG in midlateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	2.06435
GATA5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.6917
agonists	GeneRIF Biological Term Annotations	1.0	null
stratum spinosum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.28457
correlation	GeneRIF Biological Term Annotations	1.0	null
lesions	GeneRIF Biological Term Annotations	1.0	null
secretion	GeneRIF Biological Term Annotations	1.0	null
Bronchoalveolar system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Head and Neck squamous cell carcinoma_HNSC_TCGA-CN-6998-01A-23R-2016-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.266413
induce	GeneRIF Biological Term Annotations	1.0	null
crypt	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.184544
pharynx	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.068167
EC-82-LV30_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	1.18482
lesional	GeneRIF Biological Term Annotations	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-VW-A7QS-01A-12R-A33Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
interleukin-3 receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.581
Pancreatic adenocarcinoma_PAAD_TCGA-FB-A5VM-01A-11R-A32O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
blocking	GeneRIF Biological Term Annotations	1.0	null
mouth	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.995425
Prostate adenocarcinoma_PRAD_TCGA-HC-7738-11A-01R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Diabetes	DisGeNET Gene-Disease Associations	1.0	null
ATF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.9632
ZBTB12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.2924
melanocortin1	GeneRIF Biological Term Annotations	1.0	null
dispensable	GeneRIF Biological Term Annotations	1.0	null
cellular_component	LOCATE Predicted Protein Localization Annotations	1.0	null
Gata3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	23.302
EN1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.0246
Head and Neck squamous cell carcinoma_HNSC_TCGA-BB-7863-01A-11R-2232-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
tolllike	GeneRIF Biological Term Annotations	1.0	null
model	GeneRIF Biological Term Annotations	1.0	null
Nfatc2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	24.4847
MZ in rostral cingulate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.21267
skin disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.582384
Lung squamous cell carcinoma_LUSC_TCGA-56-7730-01A-11R-2125-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
defensin	GeneRIF Biological Term Annotations	1.0	null
body	GeneRIF Biological Term Annotations	1.0	null
caga	GeneRIF Biological Term Annotations	1.0	null
Leukemia, Adult T Cell_Blood monocyte_GSE10789	GEO Signatures of Differentially Expressed Genes for Diseases	-1.0	-0.895723
authors	GeneRIF Biological Term Annotations	1.0	null
Facioscapulohumeral muscular dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.251
VK-2/E6E7 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.123
cell	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.423174
fetus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.119885
SP in granular insular cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.05956
hematopoietic cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054542
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-7411-01A-11R-2081-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hematopoietic system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
increased bone mineral density	MGI Mouse Phenotype Associations 2023	1.0	null
although	GeneRIF Biological Term Annotations	1.0	null
promotes	GeneRIF Biological Term Annotations	1.0	null
axis	GeneRIF Biological Term Annotations	1.0	null
cytotoxicity	GeneRIF Biological Term Annotations	1.0	null
Lymphoid tissue	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
detectable	GeneRIF Biological Term Annotations	1.0	null
nfkappab	GeneRIF Biological Term Annotations	1.0	null
highglucose	GeneRIF Biological Term Annotations	1.0	null
TLX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.892
RARG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.8464
AA-11-RO46_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.576553
NFIC	JASPAR Predicted Transcription Factor Targets	1.0	null
SREBF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.6872
keratinocytes	GeneRIF Biological Term Annotations	1.0	null
496100416_FWM_dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.36041
oxidation	GeneRIF Biological Term Annotations	1.0	null
bronchus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.320227
disease by infectious agent	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.535409
Lung adenocarcinoma_LUAD_TCGA-91-6830-01A-11R-1949-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.37687
OCUM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0169
multiform (lateral) division of MD	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.0259
proinflammatory	GeneRIF Biological Term Annotations	1.0	null
496100421_PCx_probable Alzheimer's disease_TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.40625
activities	GeneRIF Biological Term Annotations	1.0	null
RT4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24408
Head and Neck squamous cell carcinoma_HNSC_TCGA-IQ-A61J-01A-11R-A30B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
YF-77-FV50_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.213523
stratum corneum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.475812
Gastritis	DisGeNET Gene-Disease Associations	1.0	null
intracellular	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.230958
defb103	GeneRIF Biological Term Annotations	1.0	null
myeloid dendritic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.553683
Calcaneal bone	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.918
increased bone mineral content	IMPC Knockout Mouse Phenotypes	1.0	null
fluorouracil_homo sapiens_gpl550_gds845	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
Mastitis	DisGeNET Gene-Disease Associations	1.0	null
GSE118077_7_v_2_sprr5_human	RummaGEO Gene Perturbation Signatures	-1.0	null
contact	GeneRIF Biological Term Annotations	1.0	null
ability	GeneRIF Biological Term Annotations	1.0	null
CEBPG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.0697
tendon sheath	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.378372
hfob cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.739266
WSU-DLCL2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.58302
UKE-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.84508
uterine	GeneRIF Biological Term Annotations	1.0	null
nfkappabregulated	GeneRIF Biological Term Annotations	1.0	null
PB-09-OE00_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	5.07043
shigellosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.566443
cellular_component	LOCATE Curated Protein Localization Annotations	1.0	null
PMC12381255-41389_2025_576_MOESM2_ESM.xlsx-Progenitor_SRCAP-1879-Gene_SRCAP	Rummagene Transcription Factor Associations 2026	1.0	null
uterine endometrium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.080037
EMX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.3871
496100419_TCx_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	6.55771
respiratory epithelium	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
PMC4494966__F4	PFOCR Pathway Figure Associations 2024	1.0	null
fungal infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.067376
protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.040298
Stat5a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	26.132
cervicitis	GeneRIF Biological Term Annotations	1.0	null
sweat	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.219264
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.64154
Keratin filament	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.098
Colon Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
PMC7232598__F4	PFOCR Pathway Figure Associations 2023	1.0	null
asip	GeneRIF Biological Term Annotations	1.0	null
bacterial	GeneRIF Biological Term Annotations	1.0	null
ESX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.3422
bronchiolar epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.303559
GD-66-XE49_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.212025
QA-34-PH05_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.73157
broadspectrum	GeneRIF Biological Term Annotations	1.0	null
NCI-H2009	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.23042
leprosy	GeneRIF Biological Term Annotations	1.0	null
NCI-H1650	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.971858
Tracheal stenosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.331
interleukin-12 receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.992
like	GeneRIF Biological Term Annotations	1.0	null
Integumentary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.382
NCI-H1155	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.58302
corpus callosum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.862212
demonstrates	GeneRIF Biological Term Annotations	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-DD-A4NQ-01A-21R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
mean	GeneRIF Biological Term Annotations	1.0	null
fibroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062783
peritoneal	GeneRIF Biological Term Annotations	1.0	null
perturbation	GeneRIF Biological Term Annotations	1.0	null
JEKO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.19301
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-A45P-01A-11R-A24H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cuneate nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.20461
lymphoid tissue	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
epithelial	GeneRIF Biological Term Annotations	1.0	null
regulating	GeneRIF Biological Term Annotations	1.0	null
FOSL2::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.9711
other	GeneRIF Biological Term Annotations	1.0	null
cornea	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.416195
bacterial pneumonia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.352291
mononuclear phagocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.114225
inferior colliculus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.0041
epidermal cell	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
eye and adnexa disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.044839
18318837-TableS1	GeneSigDB Published Gene Signatures	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CR-7394-01A-11R-2016-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
DDX19B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.27055
marrow cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.091132
layer II of caudal entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.844084
xog1p	GeneRIF Biological Term Annotations	1.0	null
downregulation	GeneRIF Biological Term Annotations	1.0	null
gingiva	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.836156
streptococcus	GeneRIF Biological Term Annotations	1.0	null
disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.719654
hsa-miR-3658	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
Atherosclerosis	DisGeNET Gene-Disease Associations	1.0	null
analogues	GeneRIF Biological Term Annotations	1.0	null
20460173-ImmPortComprehensiveListofImmune-RelatedGenes	GeneSigDB Published Gene Signatures	1.0	null
NCI-H1355	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.28815
Prostate adenocarcinoma_PRAD_TCGA-EJ-5509-01A-01R-1580-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
FOS::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.3148
innate	GeneRIF Biological Term Annotations	1.0	null
AD-58-PW17_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.241451
organelle part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
caudal division of IPC (area 39)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.43682
leukoplakia	GeneRIF Biological Term Annotations	1.0	null
carcinomas	GeneRIF Biological Term Annotations	1.0	null
lvs	GeneRIF Biological Term Annotations	1.0	null
CE-19-PD79_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.331698
cell surface	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.203361
joint	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.251934
dysregulated	GeneRIF Biological Term Annotations	1.0	null
RT-112	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03942
olfactory epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.326067
hbd1	GeneRIF Biological Term Annotations	1.0	null
standard	GeneRIF Biological Term Annotations	1.0	null
hsa-miR-4639-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
tonsil	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.360409
IZ in medial temporal-occipital cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.877945
detected	GeneRIF Biological Term Annotations	1.0	null
mouse	GeneRIF Biological Term Annotations	1.0	null
LZTS2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.83518
required	GeneRIF Biological Term Annotations	1.0	null
Pharyngeal epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.561
hek-293 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.219264
JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.6087
mip3alphaccl20	GeneRIF Biological Term Annotations	1.0	null
PE01	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.833674
increased bone mineral density	IMPC Knockout Mouse Phenotypes	1.0	null
tonsils	GeneRIF Biological Term Annotations	1.0	null
spleen	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.379123
common cold	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.286519
gingival fibroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.48087
Acute Myeloid Leukemia_LAML_TCGA-AB-2805-03A-01T-0734-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
female reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.172799
Ichthyosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.148
Respiratory epithelium	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
SG in granular insular cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.43486
Gingival fibroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.957
oral epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.920771
organelle lumen	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
IC-28-HS37_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	2.11482
increased grip strength	IMPC Knockout Mouse Phenotypes	1.0	null
endocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055861
Disease by infectious agent	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.08
BEN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.83653
colon	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.074981
membrane-enclosed lumen	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
nose	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.246124
Cell envelope Sec protein transport complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.506
Ebolavirus(ZEBOV)_3day_PBMCs_rNAPc2treated_21987740_GSE24943	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	0.05536
Brain Lower Grade Glioma_LGG_TCGA-DB-A75L-01A-11R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Autoimmune disease of musculoskeletal system	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.332
sensory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.415024
wounds	GeneRIF Biological Term Annotations	1.0	null
DC-23-UM36_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	3.55501
Keratitis Caused By Infection	DisGeNET Gene-Disease Associations	1.0	null
lines	GeneRIF Biological Term Annotations	1.0	null
targets	GeneRIF Biological Term Annotations	1.0	null
Alveolar Bone Loss	DisGeNET Gene-Disease Associations	1.0	null
cytoplasmic vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.058837
membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Head and Neck squamous cell carcinoma_HNSC_TCGA-CX-7085-01A-21R-2016-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Epidermal cell	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Adrenocortical carcinoma_ACC_TCGA-OR-A5JY-01A-31R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MAF::NFE2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.7982
tlr24	GeneRIF Biological Term Annotations	1.0	null
melanoma	GeneRIF Biological Term Annotations	1.0	null
lung	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
BGC-823 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.041
reducing	GeneRIF Biological Term Annotations	1.0	null
determinant	GeneRIF Biological Term Annotations	1.0	null
Npas4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	15.8609
paracrine	GeneRIF Biological Term Annotations	1.0	null
Eczema	DisGeNET Gene-Disease Associations	1.0	null
variable	GeneRIF Biological Term Annotations	1.0	null
skin	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Cervical epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.626
laterorostral part of entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.22646
head	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.676987
BF-97-LS55_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.21898
region	GeneRIF Biological Term Annotations	1.0	null
PMC12436147-41380_2025_3032_MOESM1_ESM.xlsx-ST2-Supplementary_Table2_Blood_pQTLs_that_were_selected_as_genetic_instruments_for_MR_analyses_UKB_NR3C2	Rummagene Transcription Factor Associations 2026	1.0	null
RAX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.2202
Candidiasis Of The Esophagus	DisGeNET Gene-Disease Associations	1.0	null
Respiratory system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
melanocytes	GeneRIF Biological Term Annotations	1.0	null
MAFK	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.6955
antiinfective	GeneRIF Biological Term Annotations	1.0	null
myeloid progenitor cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.090132
Sarcoma_SARC_TCGA-VT-A80J-01A-11R-A36F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
being	GeneRIF Biological Term Annotations	1.0	null
Autoimmune disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.303
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.06603
ASPC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.949405
Lung squamous cell carcinoma_LUSC_TCGA-43-6771-01A-11R-1820-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
pathways	GeneRIF Biological Term Annotations	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-EJ-7782-11A-01R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
primary	GeneRIF Biological Term Annotations	1.0	null
CC-03-PW00_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.236267
subjects	GeneRIF Biological Term Annotations	1.0	null
monocytes	GeneRIF Biological Term Annotations	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-P5-A731-01A-11R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
lipid	GeneRIF Biological Term Annotations	1.0	null
explained	GeneRIF Biological Term Annotations	1.0	null
PANC 08.13	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.34168
Golgi lumen	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
MSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.3389
GSE222758_0_v_2_clofazimine_human	RummaGEO Drug Perturbation Signatures	1.0	null
golgi lumen	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Amyloidosis	DisGeNET Gene-Disease Associations	1.0	null
Inclusion Body Myopathy	DisGeNET Gene-Disease Associations	1.0	null
JF-30-FW92_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	3.33958
Osteopenia	DisGeNET Gene-Disease Associations	1.0	null
mc1r	GeneRIF Biological Term Annotations	1.0	null
extracellular region	LOCATE Curated Protein Localization Annotations	1.0	null
FOSL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.4225
RFX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.1429
large intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.069508
hair	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.220831
intestinal epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.293151
secretory granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.098833
potent	GeneRIF Biological Term Annotations	1.0	null
reconstructed	GeneRIF Biological Term Annotations	1.0	null
dendritic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.531879
extensive	GeneRIF Biological Term Annotations	1.0	null
lymphoid tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.303198
macrophages	GeneRIF Biological Term Annotations	1.0	null
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-VS-A8EL-01A-11R-A37O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-CJ-4891-01A-01R-1305-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
polymyositis	GeneRIF Biological Term Annotations	1.0	null
mucoceles	GeneRIF Biological Term Annotations	1.0	null
GATA4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.5614
mononuclear cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.095646
A-Vietnam-1203_CIP048_RG4-2004(H5N1)NS1trunc_7Hour_None_GSE43204	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.14372
HCC2688	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.50324
uterus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056702
extracellular region	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
hematopoietic system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.722398
present	GeneRIF Biological Term Annotations	1.0	null
periaqueductal gray substance, ventral portion	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.02547
relationship	GeneRIF Biological Term Annotations	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-EB-A5SF-01A-11R-A311-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
choroid plexus of the fourth ventricle	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.42821
POU6F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.2451
CF-31-GE67_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.340641
Nfatc1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	21.471
stress	GeneRIF Biological Term Annotations	1.0	null
urogenital system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.245807
dendritic	GeneRIF Biological Term Annotations	1.0	null
number	GeneRIF Biological Term Annotations	1.0	null
dorsal motor nucleus of the vagus (vagal nucleus)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.998185
Sarcoma_SARC_TCGA-MJ-A850-01A-11R-A355-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
muscular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060557
autosomal recessive disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.050305
FOSL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.85
central part of CEl	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.962309
identify	GeneRIF Biological Term Annotations	1.0	null
helicobacter	GeneRIF Biological Term Annotations	1.0	null
inflammatory	GeneRIF Biological Term Annotations	1.0	null
immunity	GeneRIF Biological Term Annotations	1.0	null
TOV-112D	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.949405
ZBTB17	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.3356
damage	GeneRIF Biological Term Annotations	1.0	null
expresses	GeneRIF Biological Term Annotations	1.0	null
Facioscapulohumeral muscular dystrophy 1	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.003
PANC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.50374
gastritis	GeneRIF Biological Term Annotations	1.0	null
genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042466
colonization	GeneRIF Biological Term Annotations	1.0	null
tularensis	GeneRIF Biological Term Annotations	1.0	null
ZNF85	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.5634
tightjunction	GeneRIF Biological Term Annotations	1.0	null
biofilm	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.887981
macromolecular complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041652
MA-58-RR04_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.829488
injury	GeneRIF Biological Term Annotations	1.0	null
Vaginal cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.817
Skin Cutaneous Melanoma_SKCM_TCGA-EB-A550-01A-61R-A27Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hbe cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.534647
studied	GeneRIF Biological Term Annotations	1.0	null
dimer	GeneRIF Biological Term Annotations	1.0	null
shows	GeneRIF Biological Term Annotations	1.0	null
hair shaft	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.415434
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-GS-A9TV-01A-11R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
COLO-704	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.22265
GSE171572_3_v_4_tp53_human	RummaGEO Gene Perturbation Signatures	1.0	null
excretory gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054667
Head and Neck squamous cell carcinoma_HNSC_TCGA-F7-A61V-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HCC366	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.34125
embryo	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053429
intracellular organelle part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Squamous Cell Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
Hypertrophy	DisGeNET Gene-Disease Associations	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-D6-A6EK-01A-11R-A31N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
raphe magnus nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.24794
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-A6JN-01A-11R-A31N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
leukemia cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055492
GSE164874_5_v_10_prednisolone_human	RummaGEO Drug Perturbation Signatures	1.0	null
golgi apparatus part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
denticola	GeneRIF Biological Term Annotations	1.0	null
jaws	GeneRIF Biological Term Annotations	1.0	null
HS-5 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.717
chemotactic	GeneRIF Biological Term Annotations	1.0	null
report	GeneRIF Biological Term Annotations	1.0	null
EE-01-FB85_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	1.54262
vertebrate muscular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061737
fetal	GeneRIF Biological Term Annotations	1.0	null
describe	GeneRIF Biological Term Annotations	1.0	null
granulomatasis	GeneRIF Biological Term Annotations	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-EJ-5518-01A-01R-1580-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
endometrium	GeneRIF Biological Term Annotations	1.0	null
condition	GeneRIF Biological Term Annotations	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-VP-A87C-01A-11R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NRL	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.7482
epidermis	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
16489042-SuppTable1a	GeneSigDB Published Gene Signatures	1.0	null
PFEIFFER	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14112
NCI-H441 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.745
atopic	GeneRIF Biological Term Annotations	1.0	null
LBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.9627
profile	GeneRIF Biological Term Annotations	1.0	null
sites	GeneRIF Biological Term Annotations	1.0	null
barrier	GeneRIF Biological Term Annotations	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-HD-A6I0-01A-11R-A31N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cyclindependent	GeneRIF Biological Term Annotations	1.0	null
CPC-N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06512
amnion	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.18843
macrophage	GeneRIF Biological Term Annotations	1.0	null
Uroepithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.839
OE-75-WF43_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	1.84605
496100391_FWM_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.1708
AC-30-XU83_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	2.31015
BB-79-AG41_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	1.12629
Foxl2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.5738
PD-60-FM93_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.683013
behaves	GeneRIF Biological Term Annotations	1.0	null
NKX2-2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.1142
HCC515	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.6164
peptide	GeneRIF Biological Term Annotations	1.0	null
cellular_component	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.541529
planus	GeneRIF Biological Term Annotations	1.0	null
reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05504
SCRT1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.6562
hbd4	GeneRIF Biological Term Annotations	1.0	null
connective tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.432608
spa	GeneRIF Biological Term Annotations	1.0	null
nymph	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.506672
imiquimodtreated	GeneRIF Biological Term Annotations	1.0	null
amnion epithelial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.421529
Head and Neck squamous cell carcinoma_HNSC_TCGA-T2-A6WZ-01A-21R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
POLR2A_MCF-7_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Sox17	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.1003
HCC1359	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.83653
well	GeneRIF Biological Term Annotations	1.0	null
Glioblastoma	DisGeNET Gene-Disease Associations	1.0	null
COV413B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.05618
intracellular	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
OCI-M2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.39881
Brain Lower Grade Glioma_LGG_TCGA-VV-A829-01A-21R-A36H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
calorimetry	GeneRIF Biological Term Annotations	1.0	null
rnase	GeneRIF Biological Term Annotations	1.0	null
undermines	GeneRIF Biological Term Annotations	1.0	null
intracellular part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
defect	GeneRIF Biological Term Annotations	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-DK-A3WX-01A-22R-A22U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
EA-84-SC49_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.364906
blast cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.084227
osteogenic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.169624
nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.157929
hrs	GeneRIF Biological Term Annotations	1.0	null
overexpression	GeneRIF Biological Term Annotations	1.0	null
Epidermis	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
clear	GeneRIF Biological Term Annotations	1.0	null
substantial	GeneRIF Biological Term Annotations	1.0	null
respiratory epithelium cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.476201
keratosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.284728
antiinflammatory	GeneRIF Biological Term Annotations	1.0	null
NCI-H1869	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.915584
ZNF135	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	54.9483
subsequently	GeneRIF Biological Term Annotations	1.0	null
lamellar body	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.638434
alterations	GeneRIF Biological Term Annotations	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CQ-7071-01A-12R-A30B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ATF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.8917
other source	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.582019
Diabetes Mellitus	DisGeNET Gene-Disease Associations	1.0	null
Tonsil	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
squamous cell carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060308
PC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.68423