association	dataset	threshold value	standardized value
NCI-H1155	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.58302
cellular_component	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
GBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.0621
POU5F1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.273
NCI-H929	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04237
Lower respiratory tract disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.101
SNU-C2B	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.8018
isoform	GeneRIF Biological Term Annotations	1.0	null
Oral epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.046
Mastitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.052
POLR2A	ENCODE Transcription Factor Targets	1.0	null
LBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.9567
HOXA7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.4103
LMX1B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.46887
RT-112	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03994
Extraosseus Ewing's sarcoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.914
SAT	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.8018
P3X63Ag8 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.318
Epididymis	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Innate Immune System	Reactome Pathways 2024	1.0	null
ZNF35	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.9742
extracellular region	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
NCI-H2198	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.966437
Legionellosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.076
Autoimmune disease of skin and connective tissue	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.388
MINDY1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.09419
RT4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24408
ESX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.3414
SRY	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.5
NCI-H1781	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.8018
OCI-AML5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.910324
ZNF766	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.4326
KP-1N	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.8018
COQ5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.51814
HLF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8254
HOXA10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.5595
OVCA 432	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.56647
Endometrial disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.718
MDAMB436	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.894934
Carotid body	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.539
Sepal	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.885
Vaginal mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.826
internal male genital organ	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Immune system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.286
BT-549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.966437
HNF1A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.4284
BSX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.2663
Nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.016
ZR-75-30	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.8018
NFATC4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.4254
RNF130	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.19453
SW1271	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.8018
Genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.083
HCN4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.12832
ZBTB5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.48334
extracellular region	LOCATE Predicted Protein Localization Annotations	1.0	null
ESRRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.0862
Bacterial vaginosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.182
GSE184892_7_v_3_trehalose_human	RummaGEO Drug Perturbation Signatures	1.0	null
NKX6-2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.4595
SUIT-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.869147
POU3F4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.4801
GSE237053_1_v_0_comt_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Vaginal fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.228
RBPJ	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.6724
CXADR	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.77458
Uterine disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.324
STAMBP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.16019
EN2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.1179
HLE	COSMIC Cell Line Gene CNV Profiles	1.0	2.13182
MDAMB175VII	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.79813
Beta defensins	Reactome Pathways 2014	1.0	null
OVMIU	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.8018
GSE201657_0_v_1_ash2l_human	RummaGEO Gene Perturbation Signatures	1.0	null
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10649
SCRT2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.4592
Germ plasm	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.507
Stigma papilla	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.175
SCRT1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.2181
PC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.68423
ZNF558	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	136.031
FOXO1::ELF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.9636
ZNF341	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.9101
NCI-H1650	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.972744
LHX5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.9423
HIV Infections	HuGE Navigator Gene-Phenotype Associations	1.0	null
Ciliary pocket	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.264
CREB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.1707
FOXO1::FLI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.9606
BARX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.3451
RERF-LC-KJ	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.56647
Pollen mother cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.78
ME-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0434
LMX1A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.716
Whole body	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Autosomal genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.083
ZNF582	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.1638
OCI-LY-10	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.15502
NAAA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.45583
BT20	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.22847
SIX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.1444
PANC-04-03	COSMIC Cell Line Gene Mutation Profiles	1.0	null
DB	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1075
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.049807
IM-95M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.58302
COLO 680N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.50374
interleukin-5 receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.96
NURR1	MotifMap Predicted Transcription Factor Targets	1.0	null
Gravid adult	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.807
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
GFI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.8621
PAX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.4879
NCI-H345	COSMIC Cell Line Gene Mutation Profiles	1.0	null
bone marrow	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.278955
OLIG2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.5803
WDR89	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.08218
Pectoral fin	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.653
TGIF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.7177
bacteria	GeneRIF Biological Term Annotations	1.0	null
whole body	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
PAX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.0697
pattern	GeneRIF Biological Term Annotations	1.0	null
ALX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.3387
Floral meristem	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.567
PRRX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.4484
SW626	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.8018
cellular_component	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
OCUB-M	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.8018
TGIF2LX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.2922
OCI-M2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.39881
EN1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.1879
MIXL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.1878
ENSA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.95037
PBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.0
CAL 54	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.949399
Carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.04
Cervical epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.955
VMRC-LCD	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.15826
NCI-H1869	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.916863
BHLHE23	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.5589
ZNF354A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	116.686
BICR22	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.8018
hiv infections	GAD Gene-Disease Associations	1.0	null
OE21	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.8018
GSE216540_0_v_6_fulvestrant_human	RummaGEO Drug Perturbation Signatures	-1.0	null
LBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.1179
WSU-DLCL2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.58302
Extracellular region	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
aureus	GeneRIF Biological Term Annotations	1.0	null
MDAMB231	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.767155
LHX9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.9182
Dermoid cyst	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.026
Yoon-Bellen neurodevelopmental syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.622
MSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.7724
Type 1 diabetes mellitus 12	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.791
cellular_component	LOCATE Curated Protein Localization Annotations	1.0	null
Keratitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.044
PMC4858740-ncomms11473-s2.xls-HAdV-D9_Cr1b_Library_2-Hit_name_CENPX	Rummagene Transcription Factor Associations 2026	1.0	null
HCC1359	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.838464
NCI-H1581	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.8018
Breast epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.418
496100466_PCx_probable Alzheimer's disease_no TBI_89_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.08771
HOXA5	JASPAR Predicted Transcription Factor Targets	1.0	null
JHH-5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14513
PEX11A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.57445
NOTO	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.8591
NR4A2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.9833
NCI-H292	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09127
G cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.867
496100426_PCx_no dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.50086
cellular_component	LOCATE Predicted Protein Localization Annotations	1.0	null
CAMA1	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.913779
HCC2688	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.50325
Final leaf	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.59
GATA2	JASPAR Predicted Transcription Factor Targets	1.0	null
PIP5K1A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.26818
Gingival epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.842
Rad51C-XRCC3 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.726
Gracilis muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.616
EMX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.7822
animal	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Plant primordium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.633
HCC70	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.81539
NCI-H522	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.21235
ZIM3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.8832
SHOX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.2746
Defensins	Reactome Pathways 2024	1.0	null
epididymis	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Endometrial luminal epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.611
PDX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.32
OCUM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0169
Immune System	Reactome Pathways 2024	1.0	null
Silique	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.794
GSE113734_3_v_0_qprt_human	RummaGEO Gene Perturbation Signatures	1.0	null
RSC-type complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.429
DLX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.7746
HOXB7-26014856-BT474-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
native	GeneRIF Biological Term Annotations	1.0	null
UBXN2A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.03898
HOXA4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.2642
BARX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.6711
600MPE	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.738062
Disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.722
GSE135350_3_v_1_dexamethasone_human	RummaGEO Drug Perturbation Signatures	1.0	null
TEAD4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.388
HESX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.7421
MTCL1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.91853
Zygotene cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.57
Vascular cambium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.168
Cervicovaginal fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.402
Plant cell papilla	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.174
KURAMOCHI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.45263
SOX10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.6117
BCL6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.5571
20460173-ImmPortAntimicrobials	GeneSigDB Published Gene Signatures	1.0	null
RERF-LC-MS	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.8018
Gastric antrum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.398
NFATC3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.5905
Endometritis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.759
NCI-H2009	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2305
Cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.05
Genital herpes	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.15
Kinetoplastid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.223
NCI-H1781	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.31513
IM-95	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.84041
Brain Lower Grade Glioma_LGG_TCGA-TQ-A7RP-01A-21R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Paneth cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.489
against	GeneRIF Biological Term Annotations	1.0	null
Anther	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.256
HCC12	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.58302
ZR-75-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.869147
Reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.009
COVID-19	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.009
ZNF528	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.60452
FOXD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	133.538
West Nile fever	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.239
Choriodecidua	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.59
POU4F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.6778
CEBPG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.3772
ISX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.5113
Male reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Plant tumor tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.697
GLIS2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.62894
496100391_FWM_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.1708
BICR 31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.898606
GSE176144_0_v_1_zfc3h1_human	RummaGEO Gene Perturbation Signatures	1.0	null
496100420_PCx_probable Alzheimer's disease_no TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.69967
characterized	GeneRIF Biological Term Annotations	1.0	null
Cellulose synthase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.691
NDUFA1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.01001
HCC-56	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.8018
glutamyl-tRNA(Gln) amidotransferase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.75
SK-MM-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.962895
CDC14B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.12846
MAFA	MotifMap Predicted Transcription Factor Targets	1.0	null
MRPL53	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.50691
HCC515	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.6164
HS 940.T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.48323
Epididymal epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.929
17023574-TableS1	GeneSigDB Published Gene Signatures	1.0	null
SNU-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.900056
Immune System	Reactome Pathways 2014	1.0	null
OLIG3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8689
JHOS-4	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.8018
Head and Neck squamous cell carcinoma_HNSC_TCGA-CN-A6V7-01A-12R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
POU3F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.3526
SU-DHL-6	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.01556
GSE186112_1_v_0_med23_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GATA5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.6809
LRRC61	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.9286
Gastrointestinal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.236
ZSCAN16	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.0191
HCC2279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28893
Uterine Carcinosarcoma_UCS_TCGA-NA-A4QY-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
FOXO1::ELK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.7061
ETV2::HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.5553
Vaginitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.193
HT-29	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.80719
CHAGO-K-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09127
G140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.882919
Crohn's disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.052
SNU-449	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.949399
WDR75	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.22282
ZNF638	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.55007
GSE262134_0_v_1_dnajc12_human	RummaGEO Gene Perturbation Signatures	-1.0	null
RGL3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.74888
UNCX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.2191
PL18	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.8018
STAT1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.0394
Vaginal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.182
been	GeneRIF Biological Term Annotations	1.0	null
DLX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.5344
displays	GeneRIF Biological Term Annotations	1.0	null
Reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Hairy root	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.739
DUXA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.5367
FOXO1::ELK3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.2475
PMC3879300-pone.0084292.s002.xlsx-SPD_dataset-Gene_symbol_HOXD13	Rummagene Transcription Factor Associations 2026	1.0	null
Spikelet	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.026
among	GeneRIF Biological Term Annotations	1.0	null
POU3F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.8184
GBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.9046
pg4	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.955
IRF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	71.4639
defensinbeta	GeneRIF Biological Term Annotations	1.0	null
Innate Immune System	Reactome Pathways 2014	1.0	null
Vaginal epithelial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.55
PANC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.50374
ZNF214	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.6179
Portio vaginalis cervicis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.948
MEIS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.1677
Cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.217
Shoot tip	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.164
MAF::NFE2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.5128
ae1	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.706
VAX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.296
Promastigote	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.885
NR4A1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.639
FAM156B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.02947
NHDF cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.866
TEAD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.4544
USF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.016
THP-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.58302
Skin epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.86
ZNF69	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.62098
MCAS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.838464
RAB3IP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.03779
HOXD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.4043
EMX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.7797
496100469_TCx_no dementia_TBI_89_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.99952
184A1N4	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.20125
Organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.152
GRHL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.9457
CatSper complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.614
Lung disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.061
PBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.7833
Pseudostem	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.577
UACC812	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.00236
HCC1937	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.83896
DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.4443
ABTB1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.98082
LMX1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.5341
OV-90	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.935103
disulfide	GeneRIF Biological Term Annotations	1.0	null
z85	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.501
MDA-MB-330	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.8018
CHAGO-K-1	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.8018
HOXD9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.8918
betadefensin	GeneRIF Biological Term Annotations	1.0	null
NCI-H1793	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.83468
antimicrobial	GeneRIF Biological Term Annotations	1.0	null
Caput epididymis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.845
epididymisspecific	GeneRIF Biological Term Annotations	1.0	null
Autoimmune disease of musculoskeletal system	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.265
TRA2A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.34052
BEN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.838464
Integumentary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.278
496100421_PCx_probable Alzheimer's disease_TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.40625
STAC2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.29079
BV-173	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.8018
NCI-H820	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.69608
COR-L279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.833644
POU2F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.6185
496100458_FWM_no dementia_no TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.13487
array	GeneRIF Biological Term Annotations	1.0	null
COLO-704	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.22265
HCC2935	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03944
Oral epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.114
POU2F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.7878
20460173-ImmPortComprehensiveListofImmune-RelatedGenes	GeneSigDB Published Gene Signatures	1.0	null
Albedo	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.785
MDA-MB-157	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.8018
HOXB8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.0838
OPM-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.901103
PE01	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.833644
CPC-N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06554
JEKO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.19301
KMS-34	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.833644
Tassel	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.211
496100459_PCx_no dementia_no TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.35003
Uterine Carcinosarcoma_UCS_TCGA-NF-A4WX-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MEF2C	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	47.4613
Vaginal epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.192
HOXC8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.5607
Apical meristem	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.2
NCI-H1355	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.28815
BT-20	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.3417
Microspore	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.056
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.64154
Skin disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.286
Cambium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.876
STAT4	MotifMap Predicted Transcription Factor Targets	1.0	null
MFM-223	COSMIC Cell Line Gene CNV Profiles	1.0	2.13182
GBAF complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.128
CCDC47	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.54189
Fruit capsule	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.789
Panicle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.991
496100419_TCx_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	6.55771
IRF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	62.0
PANC-03-27	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.8018
Esophageal squamous epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.508
Beta-defensin	InterPro Predicted Protein Domain Annotations	1.0	null
FOXH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.368
TYK-NU.CP-R	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0169
TCF7L1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.5354
VAX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.6811
Adventitious root	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.792
CFPAC-1	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.8018
reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Mammary epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.501
MARF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.10855
Internal male genital organ	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
CCNB3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.67065
G61	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.36814
1,3-beta-D-glucan synthase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.709
ERF::FOXO1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.3733
ZNF37A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.23222
PMC3245917-supp_gkr685_nar-01129-x-2011-File015.xls-ST12-Unnamed_1_KLF6	Rummagene Transcription Factor Associations 2026	1.0	null
RCH-ACV	COSMIC Cell Line Gene CNV Profiles	1.0	2.13182
Head and Neck squamous cell carcinoma_HNSC_TCGA-MT-A7BN-01A-12R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CDX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.3588
PRRX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.7234
Tracheal epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.825
POU6F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.7223
ONECUT3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	116.142
CX-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.918
HCC1937	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.811716
Disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.808
ASPC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.949399
HCC1187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.848591
GSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	12.97
Amastigote	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.859
MDA-MB-134-VI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.972744
Cerebrocostomandibular syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.108
TMEM200A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.52091
NCI-H1092	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.39526
DMS-53	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.8018
CAMA-1	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.8018
HOXB3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.849
Autoimmune disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.216
BNIPL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.2349
STAT3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.1722
SNRPG	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.3201
Chromosome 18p deletion syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.039
SUM225CWN	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.911761
other	GeneRIF Biological Term Annotations	1.0	null
PK-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.898148
E2F7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.9308
JEKO-1	COSMIC Cell Line Gene CNV Profiles	1.0	2.13182
Bladder Urothelial Carcinoma_BLCA_TCGA-BT-A0YX-01A-11R-A10U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
extracellular region	LOCATE Curated Protein Localization Annotations	1.0	null
ETV5::FOXO1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.3027
MV-4-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07647
SCLC-21H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.38228
Uterine fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.662
POLR2A_MCF-7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Azurophil granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.043
DAOY	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.8018
OCI-AML2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.976726
Specific granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.829
CENPH	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.62546
COV413B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.05618
POLR3C	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.10486
BICR 22	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.962895
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
CCNT2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.05601
EARS2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.00867
a95	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.956
Antropyloric mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.843
MBD3L3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.65319
Sperm glycocalyx	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.082
RASL11A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.86942
male reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Musculoskeletal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.265
Amnion epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.646
staphylococcus	GeneRIF Biological Term Annotations	1.0	null
skeletal system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051817
Root apical meristem	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.303
ONECUT1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	53.5675
Endosperm	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.011
ATN-1	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.8018
MEF2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.1399
NKX6-1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.3196
Uterine endometrial epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.336
HOXD8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.1107
POU2F1::SOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	64.8935
CX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.80719
NCI-H1869	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.8018
Defensins	Reactome Pathways 2014	1.0	null
Reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.391
MDA-MB-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.47349
SMUG1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.68887
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.049822
Meristem	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.476
GALE	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.50989
COR-L88	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.8018
HNF4A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	47.358
PFEIFFER	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14133
KMH-2	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.8018
Psoriasis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.433
pg13	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.829
Primary immunodeficiency disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.209
Aleurone layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.959
MEIS3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.7046
POLR2A_MCF-7_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H209	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.58302
Antral mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.847
caki2	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.858
OLIG1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.5368
TCF7L2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.3462
RELL2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.32824
Cervical mucus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.487
Inflammatory bowel disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.035
TGIF2LY	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.4482
coli	GeneRIF Biological Term Annotations	1.0	null
Cervical epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.788
GSE210476_2_v_6_rutaecarpine_human	RummaGEO Drug Perturbation Signatures	1.0	null
VSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.3512
SIRT7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.73248
SW 1116	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.45218
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-6955-01A-11R-2016-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCI-H889	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.76718
Coronavirus infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.024
requirement	GeneRIF Biological Term Annotations	1.0	null
G120	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.848591
IGR-37	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.83468
TMEM125	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.896
Viral infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.209
PCYT1B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.25427
Autosomal recessive osteopetrosis 2	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.561
POU3F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.187
Endocervix	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.1
SOX18	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.4203
PANC 08.13	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.3417
SNU-475	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.69608
Division septum	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.57
MDAMB134VI	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-2.24086
GSE190316,GSE190324_10_v_9_rbm4_human	RummaGEO Gene Perturbation Signatures	1.0	null
LAN-6	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.8018
Pole plasm	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.505
FOXC1	JASPAR Predicted Transcription Factor Targets	1.0	null
Internode region of axon	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.812
Lung adenocarcinoma_LUAD_TCGA-62-8402-01A-11R-2326-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Floral primordium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.551
Connective tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.252
NMI	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.90426
Brahma complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.049
defensin	GeneRIF Biological Term Annotations	1.0	null
COPS4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.15546
TOV-112D	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.949399
BXPC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.882919
HCC366	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.34127
HOXB2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.4013
MAFG::NFE2L1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.6698
GSE210476_9_v_6_rutaecarpine_human	RummaGEO Drug Perturbation Signatures	1.0	null
TLX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.0942
PMC11982601-IMM-175-84-s005.xlsx-Fig5D_LPS-Innate_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
MDAMB157	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	2.40413
MSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.2078
Macrolide transmembrane transporter complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.521
Thoracic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.156
VSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.2318
Antimicrobial peptides	Reactome Pathways 2024	1.0	null
ZNF8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.4212
NCI-H1694	COSMIC Cell Line Gene Mutation Profiles	1.0	null
HOXB6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.2404
496100409_FWM_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.07917
RC3H1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.55322
UKE-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.84508
GSE250089_0_v_3_epcam_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Bethlem myopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.056
Bacterial infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.151
PKNOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.6085
urogenital system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Cellular anatomical entity	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
Uterine epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.923
Female reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.292
Breast disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.157
Intestinal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.076
Ciliary pocket collar	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.433
TGIF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.4695
POU2F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.9836
496100367_FWM_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.68243
HCC1493	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.15927
C3orf18	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.45239
PCK2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.00677
SUIT-2	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.8018
Urogenital system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
RORA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.1433
Flag leaf	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.614
HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.1266
BACH2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.2022
GRM4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.79193
GSE245270_2_v_4_isoproterenol_human	RummaGEO Drug Perturbation Signatures	1.0	null
HS 852.T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.916863
Chromocenter	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.949
FOXE1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	65.1999
ZNF317	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.8852
ZNF652	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.2616
496100418_TCx_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	7.65926
KMS-28PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.838464
Disease by infectious agent	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.544
496100460_TCx_possible Alzheimer's disease_TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.60397
DV-90	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.58302
Micronucleus	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.441
8505C	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.8018
KARPAS-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32289
H2461	COSMIC Cell Line Gene CNV Profiles	1.0	2.13182
B16-F1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.545
Root tip	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.604
496100472_PCx_possible Alzheimer's disease_TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.25669
Epididymis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.696
Plasmacytoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.873
GSE245270_2_v_5_isoproterenol_human	RummaGEO Drug Perturbation Signatures	1.0	null
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
POU5F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.3134
Uterine epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.833
Genital mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.599
HCC1419	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.724645
YY1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.78275
ZNF384	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	166.902
AZI2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.3671
MKN-74	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14133
Amnion epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.623
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.049823
GSE188458_2_v_4_hydrogen peroxide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
SAMD10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.19323
Respiratory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.23
Beta defensins	Reactome Pathways 2024	1.0	null
NR-8383 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.643
ESRRB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.5412
Disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.25
RAX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.2312
HNF4G	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.9177
Primary lysosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.993
HCC70	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.8018
496100416_FWM_dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.36041
NCI-H2804	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.966437
ZCWPW1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.36283
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.848591
OUMS-23	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.53465
Mammary epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.537
Monogenic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.06
RAX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.7634