association	dataset	threshold value	standardized value
cranium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.158577
Nfatc2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	24.5014
disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.381852
mucoepidermoid carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.641039
plasmacytoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.238792
Cervicovaginal fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.791
oral cavity cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.113184
VCB complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.581
HS 852.T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.916863
organism form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051315
GBAF complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.235
GSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.1788
RORC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.4565
Gli1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	32.8803
496100409_FWM_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.07917
epidermis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060397
phagocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.076376
Hoxd13	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	16.9695
Nfatc1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	26.3957
Prdm4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	49.5902
tretinoin_homo sapiens_gpl6244_gds4180	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Lhx4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	13.742
b-lymphocyte cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.526744
VAX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.4737
BICR 22	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.962895
blood cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.078779
ESRRB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.2209
Zygotene cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.739
ZNF24	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.7983
Urogenital system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
HOXA7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.2091
forelimb	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.082419
Pectoral fin	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.822
COLO 680N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.50374
HCC1187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.848591
NHDF cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.035
Foxo3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	22.1019
HCC2935	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03944
gastrointestinal tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.350372
Sox6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	51.7349
lymphoid tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.085453
HCC515	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.6164
POU5F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.3843
496100472_PCx_possible Alzheimer's disease_TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.25669
OCI-AML5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.910324
intestinal mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.549709
myeloid progenitor cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.071159
Pax7	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	34.4282
NR-8383 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.812
FOXP3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.7515
Dmrt1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	31.6121
Disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.198
Myoclonic dystonia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.123
caki2	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.027
Nkx3-2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.1631
Sox17	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	25.8725
Panicle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.752
MEOX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.4636
Endocervix	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.77
organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.039853
HOXD8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.8398
HCC1493	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.15927
HOXB4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.0433
496100466_PCx_probable Alzheimer's disease_no TBI_89_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.08771
Shox2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	24.7291
germ cell and embryonal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.071439
COR-L279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.833644
Head kidney	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.618
COLO-704	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.22265
lymphoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.247079
Petal	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.759
SW 1116	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.45218
blast cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.524771
Gata3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	16.6627
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.64154
heart	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.064294
Rhox11	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	47.7316
FOXC1	JASPAR Predicted Transcription Factor Targets	1.0	null
NEUROG1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.7061
HOXB6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.3287
Hairy root	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.909
Female reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.216
Final leaf	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.759
THP-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.58302
Whole body	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
periosteum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.268828
Dlx5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.053
b-lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.164616
FOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.1693
bronchoalveolar system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.073071
Rarg	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	49.4555
reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Root apical meristem	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.472
COV413B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.05618
Sepal	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.054
Antropyloric mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.921
intestinal epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.215147
POU1F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.6525
Cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.148
FOXJ2::ELF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.557
NCI-H292	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09127
pg4	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.124
496100418_TCx_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	7.65926
WSU-DLCL2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.58302
Cystic teratoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.157
FOXH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.9588
Arid3b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	27.4168
E2F7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.5623
MDA-MB-134-VI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.972744
496100391_FWM_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.1708
cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.387051
endocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.050537
cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.55712
Endosperm	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.18
lymphoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.406315
OCI-LY-10	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.15502
among	GeneRIF Biological Term Annotations	1.0	null
Male reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
HCC70	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.81539
Ptf1a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	53.4259
FOXA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.436
Plant cell papilla	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.281
BT-549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.966437
artery	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059665
Gfi1b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	52.6951
HOXB8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.8748
Awn	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.589
SNAI2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.7796
ZFP42	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.3236
Gastric antrum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.839
epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.339282
JEKO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.19301
animal	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Germ cell benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.111
Pole plasm	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.579
inclusion body	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.165697
hematopoietic cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.083315
b-lymphoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.786052
Reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.197
head	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051426
intracellular non-membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.045799
cell type benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.053104
Bcl11b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	30.8296
plasmacytoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.20022
Chromocenter	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.055
RHOXF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.8549
limb	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.088853
POU6F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.9626
KMS-28PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.838464
a95	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.125
POU2F1::SOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.5395
NFIC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.3409
FOSL1::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.3625
EN2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.3141
skin	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.083722
HCC1937	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.83896
RBPJ	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.7435
ME-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0434
Floral primordium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.72
FOXB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.8021
Six4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	21.4936
osteosclerosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.530768
POLR2A	ENCODE Transcription Factor Targets	1.0	null
NCI-H1650	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.972744
plant-type cell wall	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.996
DUXA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.6467
bone remodeling disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.113266
mandible	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.30464
Foxo1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	21.7288
Ppara	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	16.3661
Amastigote	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.028
Nfe2l2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	21.186
Plasmacytoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.042
MEF2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.4801
connective tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.049777
BICR 31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.898606
heart valve	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.507064
Stigma papilla	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.282
NKX6-2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.616
m4	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.602
BACH2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.4782
Disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.631
HAE cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.597
ETV2::DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.9179
bone disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.053218
extracellular region	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
macrophage	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.089379
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.465723
Nr1h3::Rxra	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	73.3601
craniofacial region	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.14811
colorectal mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.05809
Gravid adult	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.977
NCI-H1155	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.58302
benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042562
SCLC-21H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.38228
Foxj2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	30.2255
HCC366	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.34127
FOXO1::ELF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.2634
NCI-H1781	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.31513
RFX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.0026
female reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054871
Uterine disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.357
Rad51C-XRCC3 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.833
Ebolavirus(ZEBOV)_6day_PBMCs_rhAPCtreated_21987740_GSE24943	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	0.051221
LMX1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.1479
CHAGO-K-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09127
Arid5a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	17.3899
Uterine fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.831
STAT1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.916
HOXB5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.5538
glutamyl-tRNA(Gln) amidotransferase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.857
FOXO1::ELK3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.3409
HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.2668
kato-iii cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.654212
mononuclear cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.074155
cell	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.18796
goblet cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.601283
Lef1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	39.8945
HCC2688	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.50325
MYBL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.213
Germ plasm	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.581
Nr1h4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	25.4476
bone	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.087765
Hmga1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	36.1643
skeletal system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.086023
intracellular organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041975
bone marrow	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.14226
RORB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.2954
BSX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.0234
LMX1A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.4763
Carpal tunnel syndrome 2	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.027
germ cell cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.056237
HOXD9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.2531
Internal male genital organ	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Pseudostem	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.746
RT4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24408
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.399114
abdominal aorta	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.366381
uterine cervix	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.094783
SHOX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.5799
EVX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.2308
Thap11	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	41.0591
condensed chromosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.191135
Nanog	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	16.1822
NCI-H2198	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.966437
RT-112	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03994
Foxf1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	22.23
hematopoietic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.078937
POU3F4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.7845
MKN-74	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14133
IRF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.75
Hand1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	30.8164
PFEIFFER	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14133
Alx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	34.949
Rfx6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.5547
OCI-M2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.39881
RXRB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.6082
Jun	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	29.2182
against	GeneRIF Biological Term Annotations	1.0	null
FOXG1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.8279
ZNF354A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	63.1923
aorta	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.084906
HT-29	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.80719
Chloroplast	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.346
SNU-449	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.949399
G140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.882919
G cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.946
IM-95	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.84041
Chromosome 18p deletion syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.213
Uterine epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.791
TYK-NU.CP-R	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0169
epidermal cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062853
Mastitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.54
MCAS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.838464
OV-90	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.935103
exocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.41848
Internode region of axon	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.919
KMS-34	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.833644
intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.302118
Floral meristem	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.736
internal female genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058463
Arid3a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	44.6296
TOV-112D	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.949399
HOXA5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.5239
Nr5a1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	22.7713
t-lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.090848
HESX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.1688
Plant primordium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.802
melanoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.261245
Shoot apical meristem	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.766
marrow cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.0717
Plant tumor tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.866
HOXA3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.4474
Nr5a2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	39.1353
epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053274
Endometrial luminal epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.78
GSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.0549
ASPC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.949399
cellular_component	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
Reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Inflorescence meristem	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.666
Lhx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	29.9
DV-90	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.58302
Endometritis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.933
496100421_PCx_probable Alzheimer's disease_TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.40625
NCI-H209	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.58302
Sox1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	35.7294
melanocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.067494
Silique	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.963
Disease by infectious agent	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.048
NCI-H889	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.76718
SK-MM-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.962895
monocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.086193
Shoot tip	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.334
Dlx2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.9716
preosteoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.323144
leukocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.07559
antimicrobial	GeneRIF Biological Term Annotations	1.0	null
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10649
z85	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.67
HOXB2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.5698
salivary gland carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.203768
vascular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054304
osteogenic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.10439
hindlimb	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.071141
intracellular part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.040539
osteopetrosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.613183
endocervix	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.789796
BARHL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.227
leg	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.07594
Nobox	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	23.3947
ZNF282	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.688
POU2F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.3752
IRF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.59
MEOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.3452
Dermoid cyst	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.2
chromosome, centromeric region	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.605
NCI-H820	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.69608
gastric cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.10318
Kinetoplastid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.392
SUIT-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.869147
Aleurone layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.128
ae1	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.876
496100469_TCx_no dementia_TBI_89_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.99952
urinary system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054532
ae2	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.526
HCC2279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28893
MXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.5677
lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.100569
lymphoid cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.081307
Cotyledon	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.892
Microspore	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.225
OPM-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.901103
FLI1::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.7485
lung	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056007
Benign teratoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.111
coli	GeneRIF Biological Term Annotations	1.0	null
JHH-5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14513
Prdm5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	48.4
NFYA_01_355	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	-1.0	-0.62702
Lhx8	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	13.3532
BXPC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.882919
gastric cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.110362
Mecom	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	38.4074
Stat5a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	25.6575
mononuclear phagocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.084776
Vaginal discharge	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.02
HCC12	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.58302
496100426_PCx_no dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.50086
Anther	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.425
spleen	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.140158
PE01	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.833644
pg13	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.999
HOXB2::ELK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.3361
Adventitious root	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.961
Stat4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	25.181
Cellular anatomical entity	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
DMRTC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.8503
BEN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.838464
adenoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.135277
cellular_component	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.224204
aureus	GeneRIF Biological Term Annotations	1.0	null
alimentary canal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.333763
skin fibroblast cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.796874
FOXK2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.4605
salivary gland cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.137468
Carotid body	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.709
defensinbeta	GeneRIF Biological Term Annotations	1.0	null
PMC8359015-Table_1.xlsx-Sheet1-NFYB_NFYB	Rummagene Transcription Factor Associations 2026	1.0	null
teratoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.387423
FOXL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.762
Zfp809	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	43.3015
NCI-H1793	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.83468
gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055199
496100416_FWM_dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.36041
carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.510728
Alx4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	27.8278
HOXA10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.3405
Atoh1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	23.6826
Root tip	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.774
SU-DHL-6	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.01556
Plant bud	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.815
Arx	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.3628
HOXA6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.9083
West Nile fever	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.413
fibroblast cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.112955
OLIG3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.495
whole body	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
NCI-H522	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.21235
cartilage	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061787
Gracilis muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.785
G120	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.848591
melanoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.071268
RXRG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.4309
HOXA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.1019
other	GeneRIF Biological Term Annotations	1.0	null
Promastigote	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.054
colorectum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.069223
Dmbx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.8725
trunk	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05436
Sox5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	34.8064
VMRC-LCD	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.15826
stomach	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.072755
CDX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.7981
Dlx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	22.8878
nhdf cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.40524
FOXS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.5107
cell part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.18796
RSC-type complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.535
urinary tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054387
Micronucleus	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.548
mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.374243
Isl1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	16.5022
OCI-AML2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.976726
Dlx4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	23.3376
Antral mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.925
SOX21	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.9285
P3X63Ag8 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.487
BCL6B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.3926
bone marrow cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.362273
Rarb	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	59.7923
Organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.055
CX-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.087
EVX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.3409
Yy1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.0509
PANC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.50374
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.848591
HOXB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.4418
NCI-H929	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04237
Fruit capsule	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.958
JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.1705
jaw	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.214765
neuroendocrine cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.2259
OCUM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0169
PK-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.898148
Cerebrocostomandibular syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.282
ZSCAN21	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.8543
skin fibroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.1962
adult stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062178
HOXD4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.8858
chromosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.067831
ZNF157	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.7631
E2F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.0395
Msx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	25.5943
Extracellular region	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
Granum	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.522
POU3F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.0428
Epididymis	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
forearm	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.23781
OVCA 432	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.56647
cardiovascular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058836
Brahma complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.156
DLX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.0467
Hmx2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	31.9653
Exocarp	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.533
non-membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.045379
ZNF274	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.265
496100367_FWM_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.68243
skin cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.067237
NCI-H1355	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.28815
Cellulose synthase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.798
JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.8903
Disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.52
blood vessel	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055213
male reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Albedo	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.954
Calyx	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.82
ZNF410	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.7532
PC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.68423
urethra	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.366381
BHLHE23	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.4243
ZNF75A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.7769
OUMS-23	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.53465
hybridoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.404039
HOXC8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.9019
ISL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	12.8722
ESRRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.75
epiphyseal growth plate	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.406694
DB	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1075
ZEB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.4997
Yoon-Bellen neurodevelopmental syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.796
NCI-H1092	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.39526
mucous gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.512564
bone marrow cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.144625
melanoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.068896
Ciliary pocket collar	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.254
496100419_TCx_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	6.55771
OLIG1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.239
myeloma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.595656
NR1I2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.309
hematopoietic stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.068395
a-375 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.659491
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
lymphoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.074441
Vascular cambium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.337
POLR2A_MCF-7_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SNU-475	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.69608
uterus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.21573
myeloma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.439507
mucous cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.557263
Bethlem myopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.23
POU2F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.6448
CAL 54	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.949399
respiratory epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.089999
cystadenoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.819206
reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053513
Bile	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.753
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Flag leaf	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.783
internal male genital organ	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
NCI-H2009	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2305
HCC1359	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.838464
Endometrial disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.892
TCF7L2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.623
PANC 08.13	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.3417
HOXB7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.3555
HOXA5	JASPAR Predicted Transcription Factor Targets	1.0	null
Pollen mother cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.949
PAX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.7442
Spikelet	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.088
KARPAS-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32289
Cambium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.045
NCI-H2804	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.966437
KURAMOCHI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.45263
Type 1 diabetes mellitus 12	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.965
Radicle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.62
ETV5::HOXA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.251
groin	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.577215
496100459_PCx_no dementia_no TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.35003
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.400628
fibroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.100794
Ciliary pocket	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.085
gastrointestinal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.045921
RERF-LC-KJ	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.56647
BT-20	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.3417
MV-4-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07647
SOX13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.8181
displays	GeneRIF Biological Term Annotations	1.0	null
Nr1h2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	25.1373
496100458_FWM_no dementia_no TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.13487
NFIB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	56.5143
MDA-MB-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.47349
BARX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.2168
ETV5::DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.3743
NCI-H1869	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.916863
Sox7	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	33.2053
Gli2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	25.9434
disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.039749
HOXC4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.6772
VAX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.4422
Flower bud	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.75
B16-F1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.714
POU4F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.144
respiratory system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055453
GATA2	JASPAR Predicted Transcription Factor Targets	1.0	null
urogenital system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
PMC9999213-mmc1.xlsx-DEGs_vs_2D-DEA_NB_MSC_EC_CSc_vs_NB_2D_MSC	Rummagene Transcription Factor Associations 2026	1.0	null
HOXB3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.0419
arm	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.150362
FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.9343
SNU-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.900056
hematopoietic system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.075985
ELK1::HOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.4571
blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.079735
viscus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.314772
Meristem	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.645
epididymis	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
long bone	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.281776
CX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.80719
biofilm	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.390799
Nr2e3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	26.087
Nr2f6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	52.8032
CPC-N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06554
FOSL2::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.5143
urogenital system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.22797
Hnf1a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	38.9375
Lhx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	24.5198
hybridoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.162211
cellular_component	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
496100460_TCx_possible Alzheimer's disease_TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.60397
FOSB::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.6801
HS 940.T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.48323
ZR-75-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.869147
villus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.386273
musculoskeletal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.046319
femur	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.450271
organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041787
gastric cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.1054
Hoxa13	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	29.1818
bacteria	GeneRIF Biological Term Annotations	1.0	null
Sox3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	16.731
integument	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.065523
Autosomal recessive osteopetrosis 2	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.735
Adductor	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.703
Six3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	44.2016
IM-95M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.58302
lymphoid cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.093497
Tassel	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.381
Amyloplast	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.579
G61	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.36814
Foxj3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	44.3928
Uterine endometrial epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.315
splenocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.408592
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.362239
UKE-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.84508
Metaphase plate	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.664
HOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.0419
interleukin-5 receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.067
FOSL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.79
496100420_PCx_probable Alzheimer's disease_no TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.69967
HOXA4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.726
Atf3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	22.2817
Dux	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	44.4359
Apical meristem	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.369
Sox11	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	31.2867
Foxl2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	25.5142
connective tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.080117
p3x63ag8 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.5672
sc11	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.549
IGR-37	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.83468
FLI1::DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.3827