association	dataset	threshold value	standardized value
DV-90	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.58302
Immune system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.236
myeloid progenitor cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.09986
RFX5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.2705
MCAS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.838464
respiratory system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
OV-90	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.935103
reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
HS 852.T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.916863
gonad	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
bone marrow	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.252919
leukemia cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061188
SREBF2	JASPAR Predicted Transcription Factor Targets	1.0	null
OVCA 432	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.56647
FXYD5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.27057
tight junction	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.195025
CBLL2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.55711
RERF-LC-KJ	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.56647
ts/a	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.917
liver carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.342739
HEMK1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.0104
COV413B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.05618
ZNF324	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.93555
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.250663
SK-MM-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.962895
hsa-miR-632	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
estradiol_homo sapiens_gpl570_gds3283	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.002
S100PBP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.06672
spike	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.24676
TOV-112D	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.949399
HCC366	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.34127
cellular_component	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
REST_Panc1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RBFOX2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.79902
Oesophageal Papilloma	DisGeNET Gene-Disease Associations	1.0	null
NCI-H820	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.69608
ZNF385B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.6281
gastrointestinal system benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.9839
sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.22937
Ciliary pocket collar	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.951
COL18A1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.27437
Reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
SLC66A3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.92467
HCC2688	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.50325
Extracellular region	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
Male reproductive gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
cardiovascular system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.046565
Sperm glycocalyx	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.196
coli	GeneRIF Biological Term Annotations	1.0	null
Hair follicle outer root sheath	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.773
MESP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.01087
organism form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.050857
Endocrine gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
viral capsid	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.329461
Cervical epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.62
Diamond-Blackfan anemia 15 with mandibulofacial dysostosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	3.164
phagocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.11122
BEN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.838464
intracellular part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.040407
ZNF619	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.05471
RSC-type complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.311
FTCD	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.71641
Internal male genital organ	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
TZM-bl cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.614
Epididymis	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
Disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.619
Atopic dermatitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.034
GSE248634_1_v_0_gnas_human	RummaGEO Gene Perturbation Signatures	1.0	null
Cystic fibrosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.05
Paneth cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.595
Vaginal fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.723
cell junction	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.088738
MRGBP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.17353
Yoon-Bellen neurodevelopmental syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.688
cell part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.040266
lung	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.528719
Gingival epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.085
NCI-H2009	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2305
Epididymis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.844
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.533065
ZNF787	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.24547
MRPL52	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.06382
Tassel	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.637
Epididymis disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.028
TADA1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.83335
Vaginal epithelial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.032
NCI-H1869	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.916863
MDA-MB-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.47349
OCI-AML5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.910324
Nucleus	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
Epididymitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.031
PMC8766486-42003_2021_2990_MOESM3_ESM.xlsx-ST18-Supplementary_Data_18_Gene_burden_for_deletions_by_subtype_ST18	Rummagene Transcription Factor Associations 2026	1.0	null
Psoas	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.81
Crown gall	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.52
C15orf39	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.00018
Cecum mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.803
against	GeneRIF Biological Term Annotations	1.0	null
Bacterial vaginosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.001
RAD54B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.44265
Male reproductive system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
gastrointestinal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.053174
Gastric antrum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.928
Organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.033
CABLES1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.9927
bf2	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.963
ZNF214	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.629
COR-L279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.833644
digestive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.324605
COVID-19	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.003
PANC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.50374
A band	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.83
Respiratory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.071
Connective tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.224
cystic fibrosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.241196
MTFP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.46966
Intracellular membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
MRM3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.67887
immune system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.043184
internal male genital organ	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Whole body	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
lymphoid cell	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
QSOX2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.34031
Autoimmune disease of skin and connective tissue	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.437
Male reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Intranuclear rod	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.831
JEKO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.19301
ZBTB7B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.1432
virion	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.509197
female reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051753
Autoimmune disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.259
NCI-H1793	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.83468
Microvesicle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
b-lymphocyte cell line	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Intracellular anatomical structure	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
HRH2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.37959
USP21	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.30845
Female reproductive gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Disease by infectious agent	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.347
G120	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.848591
High pressure neurological syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.389
GATA1::TAL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.4884
FOXO4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.09267
PK-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.898148
Disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.163
IFT80	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.53331
connective tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051456
CHAGO-K-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09127
CAL 54	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.949399
METTL13	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.44323
OCUM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0169
496100418_TCx_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	7.65926
Organelle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
hypersensitivity reaction type ii disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.062084
ZR-75-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.869147
autoimmune disease of cardiovascular system	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.796642
SMYD2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.30658
ZNF674	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.80907
496100419_TCx_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	6.55771
PFEIFFER	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14133
Loin	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.709
Sebaceous gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.173
female reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
496100421_PCx_probable Alzheimer's disease_TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.40625
flower	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062092
respiratory epithelium cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.316951
Caput epididymis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.696
PADI4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.40118
BICR 31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.898606
bp86	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.582
lung	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Male infertility	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.26
CEBPD	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.6842
autosomal genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.043292
GRB7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.63242
Polytene chromosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.644
disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.041287
ME-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0434
inflorescence	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060373
HSF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.2391
HCC1937	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.83896
MFAP3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.9641
ACAD8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.3749
animal	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
macrophage	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.135742
cebpa_22442349_pbmc_lof_human_gpl570_gds4407	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	-1.0	-0.328567
ZNF382	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.7622
RPE	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.32931
Allergic contact dermatitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.021
NCI-H1650	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.972744
Secondary cell wall	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.927
PMC8437976-41416_2021_1470_MOESM2_ESM.xls-List_of_MAF_in_SNP_Rectum-Hugo_Symbol_MAF	Rummagene Transcription Factor Associations 2026	1.0	null
FOXL1	JASPAR Predicted Transcription Factor Targets	1.0	null
monocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.130294
hsa-miR-875-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.058754
vascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.050626
mononuclear phagocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.127747
Extracellular organelle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
Submucosal gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.558
ZNF746	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.17422
Gonad	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Ileal mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.602
USF2	JASPAR Predicted Transcription Factor Targets	1.0	null
vasculitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.275445
endocrine gland	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Choriodecidua	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.664
496100426_PCx_no dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.50086
LMX1A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.8738
ASPC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.949399
stomach	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.063772
ZNF667	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.0206
SEPTIN7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.22873
Male reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.006
Primary immunodeficiency disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.241
TFB1M	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.12465
EIF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.88651
POLR2A_MCF-7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
UKE-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.84508
male reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
adult stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.079022
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.848591
Breast lobe	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.001
BICR 22	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.962895
forestomach	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.333028
DNMT3L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.04158
ZNF670	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.47766
primary culture	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.116901
aureus	GeneRIF Biological Term Annotations	1.0	null
NUDT12	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.68156
HCC1359	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.838464
Cervical mucus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.56
PPARG	JASPAR Predicted Transcription Factor Targets	1.0	null
plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05198
leukocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.064521
viral genome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.397423
membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
ALG6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.46363
Extracellular membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
endocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.305722
Husk	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.74
496100391_FWM_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.1708
PANX1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.52951
Ebolavirus(ZEBOV)_6day_PBMCs_rNAPc2treated_21987740_GSE24943	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-0.056098
Coronavirus infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.021
alveolar macrophage	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.588431
Internal male genital organ	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
CatSper complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.15
MAN2A2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.89868
Male urethra	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.748
dermal dendritic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.644884
ZNF235	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.43123
Lung	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
NCI-H2804	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.966437
Lamina epithelialis mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.557
occluding junction	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.194045
Human immunodeficiency virus infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.009
AR	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.41344
JHH-5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14513
VMRC-LCD	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.15826
DB	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1075
ZNF24	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.1351
NFKB1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.63827
ZNF226	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.35431
FOXS1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.35934
cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042708
benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.489691
ZNF286A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.60872
YY1	JASPAR Predicted Transcription Factor Targets	1.0	null
HCC1187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.848591
lymphocyte	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
MAML1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.19806
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.574017
hematopoietic system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057716
hsa-miR-335-5p	MiRTarBase microRNA Targets	1.0	null
interleukin-20 receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.939
IM-95	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.84041
CCDC92B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.50248
Dermatitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.083
A-Netherlands-602-2009(H1N1)_3Hour_None_GSE40844	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.58974
GTF3C4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.99215
Papilloma	DisGeNET Gene-Disease Associations	1.0	null
M band	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.873
EARS2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.00867
PMC10247733-41408_2023_863_MOESM4_ESM.pdf-600-ZNF174_ZNF174	Rummagene Transcription Factor Associations 2026	1.0	null
CDK6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.79561
monogenic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042731
B-lymphocyte cell line	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Outer acrosomal membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.607
provirus	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.427891
Urogenital system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
OCI-LY-10	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.15502
Bethlem myopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.122
Specific granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.807
genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042135
KMS-34	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.833644
HCC2279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28893
respiratory system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.592444
496100409_FWM_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.07917
Pyloric cecum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.8
EID2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.66236
BSX	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.40982
defb6	GeneRIF Biological Term Annotations	1.0	null
H2AC17	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.52059
TCEA1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.70216
PMC3930188-813067.f1.pdf-42-DEAF1_DEAF1	Rummagene Transcription Factor Associations 2026	1.0	null
GBAF complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.791
displays	GeneRIF Biological Term Annotations	1.0	null
hsa-miR-4729	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
C19orf12	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.77718
Tracheal epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.791
cellular_component	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
RAX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.3372
gland	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
lymphoid tissue	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Serous cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.97
liver cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.322273
ZFP14	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.07033
Basophilic leukemia cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.032
Psoriasis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.5
G61	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.36814
G140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.882919
Urogenital system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
intestinal benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.11856
hsa-miR-154	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
TYK-NU.CP-R	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0169
DCUN1D3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	5.54025
MBIP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.26584
Ciliary pocket	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.782
HCC515	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.6164
POU5F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.2183
FOXC1	JASPAR Predicted Transcription Factor Targets	1.0	null
urinary tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053963
C zone	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.674
HNF1B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.36517
8305C	COSMIC Cell Line Gene Mutation Profiles	1.0	null
ZNF707	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.64174
chromosomal part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.046418
internal female genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053176
primary cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.240826
Dermal microvascular endothelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.527
Epididymal epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.481
496100420_PCx_probable Alzheimer's disease_no TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.69967
496100466_PCx_probable Alzheimer's disease_no TBI_89_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.08771
Corpus epididymis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.66
MECP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.602
disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.167682
Extracellular vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
whole body	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
male reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.253831
Viral infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.207
Chronic obstructive pulmonary disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.04
cellular_component	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.042679
RBPJ	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.7344
IGR-37	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.83468
respiratory epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.075066
Vaginal epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.555
TRMT10C	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.57922
autosomal recessive disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.049224
male reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.069513
SOX15	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.8445
CTBP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.33791
HSF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.2163
urinary system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054094
Testis	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
viscus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.307167
RT-112	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03994
Glucosidase II complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.767
MT-4 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.008
Integumentary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.39
MIER1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.35569
testis	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
WDR75	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.22282
R3HDM4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.46643
integument	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051763
albicans	GeneRIF Biological Term Annotations	1.0	null
THP-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.58302
SCLC-21H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.38228
cell type benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.050476
oviduct	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.359292
urogenital system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055776
CITED2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.0504
bladder	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.067294
male reproductive gland	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
NCI-H889	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.76718
virion part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.512047
hsa-miR-3924	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
PYGL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.48182
IM-95M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.58302
ZNF846	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.5185
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.531484
SNU-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.900056
epididymis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.539793
HCC2935	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03944
DDX31	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.36069
reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056309
PBRM1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.62681
gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.271604
Genital mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.842
Bestrophinopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.448
ZNF492	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.43989
PMC12616242-can-24-3452_supplementary_table_s2_suppst2.xlsx-Down_bins-Down_bins_loosing_H3K27me3_in_hpMSC-EWSR1_FLI1_FLI1	Rummagene Transcription Factor Associations 2026	1.0	null
organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.040811
urogenital system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
urinary bladder	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.31877
ac2	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.831
Disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.53
A7 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.552
Autosomal genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.021
cell-cell junction	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.10226
cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.041072
Cauda epididymis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.086
male infertility	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.390397
HCC1493	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.15927
fibroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.21673
Obstructive lung disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.037
pioglitazone_homo sapiens_gpl570_gds4132	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
496100416_FWM_dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.36041
bronchoalveolar system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.064401
blood	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
GATA4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.7912
SETBP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.15779
Oral epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.068
TCF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.531
skeletal system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051682
ZEB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.4304
POLR2A	ENCODE Transcription Factor Targets	1.0	null
WSU-DLCL2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.58302
cecum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.223662
SOX13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.373
hsa-miR-346	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
SUIT-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.869147
internal male genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.076343
ZNF580	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.47541
TMSB15A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.01922
hsa-miR-4288	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
NCI-H929	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04237
OPM-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.901103
hypersensitivity reaction disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.054071
RFX4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.63176
Respiratory system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
MKN-74	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14133
alimentary canal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.371245
Keratomalacia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.056
Sclerenchyma	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.575
Myoclonic dystonia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.016
ERCC6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.60649
Inflammatory bowel disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.101
CX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.80719
Musculoskeletal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.264
caput epididymis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.852527
POLR2A_MCF-7_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H1355	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.28815
Monogenic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.002
RNASE1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.93825
TXNDC9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.41144
mononuclear cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.106469
Contact dermatitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.006
TRIOBP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.37965
ets_00000000_2008_ovarian_cancer_cells_gof_human_gpl6244_gse21129	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	-1.0	-0.112962
Azurophil granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.157
496100469_TCx_no dementia_TBI_89_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.99952
Reproductive system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
trachea	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.245175
cell property	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.069981
apical junction complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.183025
ZNF184	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.4931
HT-29	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.80719
Primary lysosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.107
I band	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.025
leukocyte	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Stratum corneum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.015
SUPT4H1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.94423
KIAA1522	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.94048
marrow cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.10107
NTMT1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.83647
PANC 08.13	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.3417
Hemicellulose network	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.254
Carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.019
PGBD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.3781
TLE3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.06062
Sperm plasma membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.73
hematopoietic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059567
Crohn's disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.235
known	GeneRIF Biological Term Annotations	1.0	null
FAM170A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.97593
NCI-H522	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.21235
PE01	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.833644
TKT	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.54736
SOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.3393
GATA2	JASPAR Predicted Transcription Factor Targets	1.0	null
FAAP100	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.82428
REST	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.84617
Vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
ileocecum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.107758
ECSIT	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.89838
DOT1L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.55636
HAE cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.501
ZBTB38	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.83218
OCI-AML2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.976726
hepatocellular carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.344941
ZNF280D	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.13373
skin	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057657
A1CF	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.82003
Membrane	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
Wound fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.507
basophilic leukemia cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.927621
HS 940.T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.48323
hematopoietic stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.093582
epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.050715
Oral epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.125
intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053612
Female reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
GFI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.006
Autoimmune disease of musculoskeletal system	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.303
CBFB_01_43	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	1.93411
CPC-N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06554
blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05884
SAP30L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.91505
COLO 680N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.50374
BXPC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.882919
496100472_PCx_possible Alzheimer's disease_TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.25669
LS-411N	COSMIC Cell Line Gene Mutation Profiles	1.0	null
PDCD11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.36035
large intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055705
ATP6V0A1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.52663
blast cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.092675
Z disc	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.053
PARP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.21377
organ system benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.503824
BT-549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.966437
SU-DHL-6	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.01556
Epididymis	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
HCC70	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.81539
MINK1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.61536
defb106	GeneRIF Biological Term Annotations	1.0	null
intracellular organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.040808
Gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
extracellular region	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
496100460_TCx_possible Alzheimer's disease_TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.60397
MV-4-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07647
HCC12	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.58302
behcet's disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.796642
REST	ENCODE Transcription Factor Targets	1.0	null
MDA-MB-134-VI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.972744
BT-20	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.3417
female reproductive gland	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
NCI-H209	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.58302
OCI-M2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.39881
azoospermia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.557897
ZNF778	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.91033
SW 1116	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.45218
ATF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.3199
KURAMOCHI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.45263
NCI-H1155	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.58302
Aleurone layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.032
NCI-H1092	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.39526
Cellulose microfibril	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.558
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
GBF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.55051
organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.040735
Skin disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.398
Sebocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.758
Cellular anatomical entity	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
NR5A2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.67849
Hair follicle bulge	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.851
esophagus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.635572
CAPN5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.53962
MRPL42	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.83589
Cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.143
STAT3	JASPAR Predicted Transcription Factor Targets	1.0	null
WSCD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.88651
PTOV1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.82067
liver	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.36302
blood cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056517
COLO-704	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.22265
ACOT1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.52265
METTL14	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.84721
epididymis	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
UMNSAH/DF-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.0
hematopoietic cell	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
histiocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.384013
Follicular stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.009
RT4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24408
NCI-H2198	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.966437
cell culture	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.065732
496100458_FWM_no dementia_no TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.13487
SREBF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.4325
TP53	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.7775
ZNF675	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	67.2004
POLG2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.4965
ACKR1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.31968
GPD2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.22996
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
HSF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.5664
dermis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.122196
Gastrointestinal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.231
PMC8065135-41467_2021_22068_MOESM6_ESM.xlsx-E_MYOG_binding_in_downreg-Unnamed_1_MYOG	Rummagene Transcription Factor Associations 2026	1.0	null
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.64154
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10649
b-lymphocyte	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
CEBPA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.1433
KARPAS-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32289
SMIM24	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.04497
Skin epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.704
NCI-H292	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09127
NCI-H1781	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.31513
SNU-475	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.69608
SNU-449	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.949399
Intestinal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.116
PRR3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.44314
gastrointestinal tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055964
Chromosome 18p deletion syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.105
membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.045296
PC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.68423
KIAA1671	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.73023
antimicrobial	GeneRIF Biological Term Annotations	1.0	null
outer membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.266774
MYOD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.3682
DNAAF9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.93347
whole plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051989
KMS-28PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.838464
496100459_PCx_no dementia_no TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.35003
TGIF2LX	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.0459
496100367_FWM_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.68243
ZC3H12D	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.61274
hematopoietic system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
hsa-miR-2467-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
PDK1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.4033
other source	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.064558
NSD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.19707
papilloma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.619051
Intracellular organelle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
OUMS-23	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.53465