association	dataset	threshold value	standardized value
Ciliary pocket collar	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.6
MIXL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.7578
MYF6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.2949
RH41	CCLE Cell Line Gene CNV Profiles	-1.0	-1.38948
Cortical granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.68
Lhx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	121.05
PRDM1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.2405
Sox1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	27.3489
ESRRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.0913
Esrrg	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.4565
HCC1576	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.89956
HSC-2	COSMIC Cell Line Gene Mutation Profiles	1.0	null
A-498	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.33371
HSC-3	COSMIC Cell Line Gene CNV Profiles	1.0	4.51153
TCF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.1951
defense response	GO Biological Process Annotations 2015	1.0	null
HSC3	CCLE Cell Line Gene CNV Profiles	1.0	3.2803
HOS	CCLE Cell Line Gene CNV Profiles	1.0	1.58005
NKX6-2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.2625
NCI-H196	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.830552
FOXB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.8855
MAFF_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SCLC-21H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11231
Hindbrain	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
SEPTIN7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.22873
MDAMB361	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.879076
Nobox	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	29.9474
HOXB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.2243
USF1	ENCODE Transcription Factor Targets	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-HC-7737-11A-02R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Nasal lavage fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.95
Rarb	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	68.4824
Gingival epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.603
CAKI2	DepMap CRISPR Gene Dependency	1.0	2.40512
PANC 03.27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.90514
Awn	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.83
MEOX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.7098
PRPF19	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.28571
POU3F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.1622
HOXA3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.5968
Scrotum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.801
POU6F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.1849
Erg	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	40.7523
Primary bacterial infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.001
U937	CCLE Cell Line Gene CNV Profiles	1.0	2.14784
cell chemotaxis	GO Biological Process Annotations 2025	1.0	null
COLO792	CCLE Cell Line Gene CNV Profiles	-1.0	-1.94358
NCI-H1666	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.839142
Innate Immune System	Reactome Pathways 2024	1.0	null
CPC-N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.36702
PRDM14-20953172-ESCS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Perturb_5360_KO_Tcf12_SRP392331	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	2.23593
NCIH650	CCLE Cell Line Gene CNV Profiles	1.0	1.57489
cerebellum	HPA Tissue Protein Expression Profiles	1.0	1.66045
HT1376	DepMap CRISPR Gene Dependency	1.0	5.35514
hsa-miR-4646-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
Neural stem cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.54
HCC2814	CCLE Cell Line Gene CNV Profiles	-1.0	-1.41981
ncih727	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.748
KU812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.89956
Arid3b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	43.1176
MDA-MB-415	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.972191
JUN	ChEA Transcription Factor Targets	1.0	null
Elf5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	30.5478
DMS-273	COSMIC Cell Line Gene Mutation Profiles	1.0	null
HOXD11	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8959
VMRC-LCD	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.892827
C3A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.830552
PE01	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.37329
Endometrial luminal epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.02
PL-21	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.872538
COLO 829	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07666
Perturb_17304_KO_Tug1_SRP176442	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-1.77563
PAX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.7572
Brain stem	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
RUNX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.418
EVSA-T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23606
MAFK_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.910287
496100426_PCx_no dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.50086
response to external biotic stimulus	GO Biological Process Annotations 2015	1.0	null
GR-M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.858674
LHX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.3399
ZNF136	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	60.2281
hsa-miR-4790-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
NCI-H209	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.27694
Neuro D	MotifMap Predicted Transcription Factor Targets	1.0	null
PANC 02.03	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.33371
UM-UC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.910287
HCC3153	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.69175
KPL-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.895811
HCC1897	CCLE Cell Line Gene CNV Profiles	-1.0	-1.76987
GTL-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.90514
DACH1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.25179
response to other organism	GO Biological Process Annotations 2015	1.0	null
ESX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.96
BHLHE22	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.0278
POU1F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.8323
HOXB9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.3788
HOXC9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.8458
Pax7	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	92.9505
NCO2	CCLE Cell Line Gene CNV Profiles	1.0	1.39497
Egg white	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.842
CCR6 chemokine receptor binding	GO Molecular Function Annotations 2023	1.0	null
Antimicrobial peptides	Reactome Pathways 2024	1.0	null
Arid5a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	40.93
BARX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.4148
NCI-H2172	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.86938
Perturb_5526_KO_Crtc1_SRP279598	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-20.0
Dux	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	67.8494
NCI-H2170	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.858674
HOXB5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.0472
PITX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.5879
DDRGK1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.471
A549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.910287
GATA3_SH-SY5Y_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RNA polymerase II termination complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.644
WDR75	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.22282
ML1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.45887
HOXC13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.3269
cellular_component	LOCATE Predicted Protein Localization Annotations	1.0	null
SUM1315MO2	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.27984
HOXC8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.1763
Irf1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	35.7123
SK-BR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03814
SNU-484	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.27575
HCC364	CCLE Cell Line Gene CNV Profiles	-1.0	-1.96657
HUPT4	DepMap CRISPR Gene Dependency	1.0	7.27658
HOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.5529
TBXT	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.0296
496100409_FWM_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.07917
POU3F4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.9892
HPAC	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.911098
Immune System	Reactome Pathways 2014	1.0	null
OVKATE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.69521
ZNF274	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.4234
RAP1B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.95518
Hmx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.1492
Msx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	20.0155
NCIH661	CCLE Cell Line Gene CNV Profiles	1.0	1.42729
HOXC10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.2681
CTCF	ENCODE Transcription Factor Targets	1.0	null
cellular_component	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
SU-DHL-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09075
PMC10099894-NAN-49-0-s001.xlsx-GENIC_INTERSECT_VCF-MID_TBX1	Rummagene Transcription Factor Associations 2026	1.0	null
MOLP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.840141
U2904	DepMap CRISPR Gene Dependency	1.0	3.58305
CCR chemokine receptor binding	GO Molecular Function Annotations 2025	1.0	null
JHU022	DepMap CRISPR Gene Dependency	1.0	2.38684
496100418_TCx_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	7.65926
KURAMOCHI	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
antimicrobial	GeneRIF Biological Term Annotations	1.0	null
plasma membrane	LOCATE Predicted Protein Localization Annotations	1.0	null
Rarg	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	48.9649
NFIL3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.5903
SMAD4-21741376-EPCS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Phellem	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.648
RAX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.4139
AR-25329375-VCAP-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
SUM225CWN	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.54394
Beta-defensin	InterPro Predicted Protein Domain Annotations	1.0	null
JM1	DepMap CRISPR Gene Dependency	1.0	10.9252
CAMA1	CCLE Cell Line Gene CNV Profiles	1.0	1.42828
KLE	DepMap CRISPR Gene Dependency	1.0	2.28635
EMX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.7829
Defensins	Reactome Pathways 2014	1.0	null
NKX2-5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.4146
MEC2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.45943
496100458_FWM_no dementia_no TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.13487
DAN-G	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03339
NURR1	MotifMap Predicted Transcription Factor Targets	1.0	null
CEBPA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.5179
GATA3-22897851-JUKARTE6-1-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
FUS-26573619-CHIP-SEQ-HEK293-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
OLIG2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.8679
RBPJ	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.6848
U-937	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.78933
TT	CCLE Cell Line Gene CNV Profiles	1.0	2.24246
EN1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.2319
OLIG3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.877
extracellular region	GO Cellular Component Annotations 2015	1.0	null
HOXD10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.3363
Foxo3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	22.0011
ZNF652	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.4841
MG63	CCLE Cell Line Gene CNV Profiles	1.0	2.59999
COLO741	CCLE Cell Line Gene CNV Profiles	1.0	1.66505
P300-19829295-ESCS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
GSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.2883
Epididymal epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.521
LMX1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.9116
SET2	DepMap CRISPR Gene Dependency	1.0	4.00784
MSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.4204
NCI-H1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.58345
HOXC4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.1456
VAX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.6064
Head and Neck squamous cell carcinoma_HNSC_TCGA-RS-A6TO-01A-32R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SK-MEL-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16184
SNU886	DepMap CRISPR Gene Dependency	1.0	2.57102
NCI-H1573	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.88413
AR-27623747-22RV1-MOUSE-PROSTATE-CARCINOMA	ChEA Transcription Factor Targets 2022	1.0	null
G111	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.13315
GATA1::TAL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.4484
HNF4G	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.2618
ECGI10	CCLE Cell Line Gene CNV Profiles	1.0	1.59855
TMEM145	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.764
HNF4A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.704
membrane	LOCATE Predicted Protein Localization Annotations	1.0	null
Stat4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	26.2068
CTCF_GM10266_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
UNCX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.7318
CTCF_MCF-7_hg19_9	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H1975	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.910287
EWS-FLI1-20517297-SK-N-MC-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
HEP G2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02626
Pou5f1::Sox2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	42.4238
496100459_PCx_no dementia_no TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.35003
POLR2A	ENCODE Transcription Factor Targets	1.0	null
POU4F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.1486
EWS-FLI1-20517297-SK-N-MC-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
MSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.7165
FOS	ENCODE Transcription Factor Targets	1.0	null
SUM159PT	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.21885
COLO 206F	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.44378
hsa-miR-578	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
Head	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
VAX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.7176
NCIH2172	CCLE Cell Line Gene CNV Profiles	1.0	1.79405
Innate Immune System	Reactome Pathways 2014	1.0	null
Epididymal fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.081
LHX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.5009
Sox17	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	26.7199
Foxj2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	41.311
Mastitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.582
Stat2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	74.0677
M059K	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.30499
FOXH1-21741376-EPCS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
LHX9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.0559
HBL-100	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.839142
FOXC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.2569
MAFF	ENCODE Transcription Factor Targets	1.0	null
NCI-H748	COSMIC Cell Line Gene Mutation Profiles	1.0	null
HOXD12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.4219
POU3F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.361
THP-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.27694
Nfatc1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	20.5697
496100421_PCx_probable Alzheimer's disease_TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.40625
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.840141
UMC-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.893889
NFYB	ENCODE Transcription Factor Targets	1.0	null
Mecom	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	22.7407
ALX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8538
HOXB4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.6389
GBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.9109
TBX19	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.5956
USF1_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.3353
Foxl2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	39.9787
SW1783	CCLE Cell Line Gene CNV Profiles	-1.0	-2.14234
496100367_FWM_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.68243
heart disease	GWASdb SNP-Disease Associations	1.0	0.812342
COLO 201	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07666
RAX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.7349
cell part	LOCATE Predicted Protein Localization Annotations	1.0	null
BCL6B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.0874
NCIN87	CCLE Cell Line Gene CNV Profiles	-1.0	-2.30296
YY1	MotifMap Predicted Transcription Factor Targets	1.0	null
ZNF354A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	78.7551
SNU-475	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03901
PMC4858740-ncomms11473-s2.xls-HAdV-D9_Cr1b_Library_2-Hit_name_CENPX	Rummagene Transcription Factor Associations 2026	1.0	null
Dlx2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	16.8834
HOXA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.0245
Glycerol kinase deficiency	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.271
Sox11	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	24.6028
MAFK	ENCODE Transcription Factor Targets	1.0	null
PHOX2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.5383
HUG1N	CCLE Cell Line Gene CNV Profiles	1.0	1.68778
NCI-H1792	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.32304
receptor ligand activity	GO Molecular Function Annotations 2025	1.0	null
POU6F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.3199
COLO205	CCLE Cell Line Gene CNV Profiles	-1.0	-1.48247
Defensins	Reactome Pathways 2024	1.0	null
HN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05899
CEBPA-26348894-LIVER-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
RBM28	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.13269
MNX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.652
Nervous system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
GATA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.1103
HCC38	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.29606
LOX-IMVI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.839142
TRPS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.4978
PMC8423434-mmc7.xlsx-SOX2_Primed-Genes_n_3042_SOX2	Rummagene Transcription Factor Associations 2026	1.0	null
EZH2_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HOXC12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.7096
biological_process	GO Biological Process Annotations 2015	1.0	null
ZNF24	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.0118
Dlx4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.6433
defense response to other organism	GO Biological Process Annotations 2015	1.0	null
MDA-MB-330	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03339
disease	GWASdb SNP-Disease Associations	1.0	0.024775
HCC2998	COSMIC Cell Line Gene Mutation Profiles	1.0	null
thought	GeneRIF Biological Term Annotations	1.0	null
POU4F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.4406
Immune System	Reactome Pathways 2024	1.0	null
Grm	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.544
EZH2	ENCODE Transcription Factor Targets	1.0	null
Vitelline membrane	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.533
KYSE-150	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2565
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.12154
ESRRB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.2361
PROP1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.5868
NCIH2286	CCLE Cell Line Gene CNV Profiles	-1.0	-1.70645
CTCF_keratinocyte_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ISX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.1746
NCI-H920	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.3922
hsa-miR-432	TargetScan Predicted Conserved microRNA Targets	1.0	1.11641
Psp	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.603
ZNF189	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.5389
BT20	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.819758
COLO 741	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19394
Hair shaft	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.86
SNU-423	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.22152
VCAP	CCLE Cell Line Gene CNV Profiles	1.0	1.78078
GATA6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.4578
extracellular region	LOCATE Predicted Protein Localization Annotations	1.0	null
SUDHL8	CCLE Cell Line Gene CNV Profiles	1.0	1.47528
PMC12019518-ao5c02459_si_002.xlsx-Table_S3-Table_S3_Screening_of_genes_that_are_commonly_upregulated_in_cells_on_stiff_substrate_and_down-regulated_by_KD_of_UBE2A_B_AR	Rummagene Transcription Factor Associations 2026	1.0	null
Cerebellum	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
response to stress	GO Biological Process Annotations 2015	1.0	null
HCC4006	CCLE Cell Line Gene CNV Profiles	-1.0	-1.70843
Shox2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.9932
SCLC-22H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.939692
NKX6-1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.5556
PMC8104016-hcg-12-e002353-s006.xlsx-mTHP-1-LPS_Prom-Prom_Prom-GWAS-RefSeq_Name_1_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
Ikzf3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	32.5655
BSX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.1992
JUND_H1-hESC_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POU2F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.1329
disease of anatomical entity	GWASdb SNP-Disease Associations	1.0	0.027646
CMLT1	DepMap CRISPR Gene Dependency	1.0	2.4786
YAMATO	DepMap CRISPR Gene Dependency	1.0	3.1159
GATA3	ENCODE Transcription Factor Targets	1.0	null
SW954	DepMap CRISPR Gene Dependency	1.0	2.01533
20460173-ImmPortAntimicrobials	GeneSigDB Published Gene Signatures	1.0	null
BHLHE23	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.9752
JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.3512
abnormality of cardiac morphology	GWASdb SNP-Phenotype Associations	1.0	0.708265
MEL-HO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.839142
EM2	CCLE Cell Line Gene CNV Profiles	1.0	1.81335
NCI-H510A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.41142
OVKATE	CCLE Cell Line Gene CNV Profiles	-1.0	-2.18907
HCC38	CCLE Cell Line Gene CNV Profiles	-1.0	-1.35752
ECC4	DepMap CRISPR Gene Dependency	1.0	5.79364
HCC4006	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.44905
NCIH1793	CCLE Cell Line Gene CNV Profiles	-1.0	-1.56871
Vas deferens	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.368
600MPE	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.63551
COLO320	DepMap CRISPR Gene Dependency	1.0	2.90151
NANOG-20526341-ESCS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
GATA4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.8604
all	GWASdb SNP-Phenotype Associations	1.0	0.028717
TCF4	MotifMap Predicted Transcription Factor Targets	1.0	null
OLIG1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.9269
Lhx4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	14.7278
ZNF680	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.2381
496100416_FWM_dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.36041
A-375	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.858674
HOXA4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.56
EFM-19	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.5104
Tracheal epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.825
PK1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.54982
defense response to bacterium	GO Biological Process Annotations 2025	1.0	null
extracellular region	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
Hmx2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	97.8092
EVSAT	DepMap CRISPR Gene Dependency	1.0	3.64455
phenotypic abnormality	GWASdb SNP-Phenotype Associations	1.0	0.028741
SOX2-19829295-ESCS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
DUSP5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.31864
HUT78	CCLE Cell Line Gene CNV Profiles	1.0	1.36451
HCC1187	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.882351
NOTO	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.6812
EFM-192A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.839142
Egg yolk	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.781
CCR chemokine receptor binding	GO Molecular Function Annotations 2023	1.0	null
Arx	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	45.9276
HCC78	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.890901
NFYB_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Arid3a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	33.7407
496100391_FWM_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.1708
496100472_PCx_possible Alzheimer's disease_TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.25669
CAOV3	CCLE Cell Line Gene CNV Profiles	1.0	1.83673
encoded	GeneRIF Biological Term Annotations	1.0	null
PMC9161725-Table_4.xlsx-EHF-CSAG1_EHF	Rummagene Transcription Factor Associations 2026	1.0	null
LBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.8861
CAPAN2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.63392
HCC1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.05855
CAL72	DepMap CRISPR Gene Dependency	1.0	2.18923
BARX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.7673
NR1I3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.1146
P63-20808887-KERATINOCYTES-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
MKN-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.90514
PSN1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.936877
HOXA5	JASPAR Predicted Transcription Factor Targets	1.0	null
NCIH2110	DepMap CRISPR Gene Dependency	1.0	2.48762
SCC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.27694
A498	CCLE Cell Line Gene CNV Profiles	-1.0	-1.50605
response to external stimulus	GO Biological Process Annotations 2015	1.0	null
POU2F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.2189
NCI-H1437	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.910287
496100466_PCx_probable Alzheimer's disease_no TBI_89_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.08771
PDX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.4651
cardiovascular system disease	GWASdb SNP-Disease Associations	1.0	0.060777
LBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.7172
Sox7	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	21.6865
Hmx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.7836
hsa-miR-3663-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
HCC1599	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.800965
Foxj3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	63.3883
Sperm head	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.196
KYSE150	CCLE Cell Line Gene CNV Profiles	-1.0	-1.32357
GPHA2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.12573
Metencephalon	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
Nr2e1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	24.6542
EVX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.1855
EPLC-272H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.840141
HOXA6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.4126
GSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.1007
Nr2e3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	31.0435
Sox5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.6452
SOX15	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.5165
FOS	JASPAR Predicted Transcription Factor Targets	1.0	null
PMC8104016-hcg-12-e002353-s006.xlsx-mTHP-1-LPS_Prom-Prom_Prom-GWAS-RefSeq_Name_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
KP-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.910287
GATA3-26560356-CHIP-SEQ-TH1-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
HOXD4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.3698
496100469_TCx_no dementia_TBI_89_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.99952
TUHR14TKB	CCLE Cell Line Gene CNV Profiles	-1.0	-1.6889
H3K9me3_fibroblast of lung_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
SCC-9	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.829757
Foxf1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	22.3252
Lymphotoxin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.643
cell chemotaxis	GO Biological Process Annotations 2023	1.0	null
MEOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.5451
PANC0327	CCLE Cell Line Gene CNV Profiles	1.0	1.60451
496100460_TCx_possible Alzheimer's disease_TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.60397
VSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.4495
ZSCAN21	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.7191
GBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.7377
Nfat5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	35.6713
ZBTB18	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.7204
FOS_MCF 10A_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCIH1573	DepMap CRISPR Gene Dependency	1.0	2.22574
EP300_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC1493	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.94337
JUN-21703547-K562-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
PMC11258892-NIHMS2003533-supplement-MMC6.pdf-48-ZNF229_ZNF229	Rummagene Transcription Factor Associations 2026	1.0	null
defense response to bacterium	GO Biological Process Annotations 2015	1.0	null
Disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.018
HOXB3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8489
BT549	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.10771
SUDHL6	CCLE Cell Line Gene CNV Profiles	1.0	1.81817
HNF1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.6405
MDAMB436	CCLE Cell Line Gene CNV Profiles	-1.0	-1.38544
TP63	JASPAR Predicted Transcription Factor Targets	1.0	null
NCI-N87	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.48095
HCC1599	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.68314
CAPAN-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.29606
Brain	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
Alx4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	42.5473
PRRX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.4435
JUND	ENCODE Transcription Factor Targets	1.0	null
ZNF582	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.4983
NR3C1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.1021
receptor ligand activity	GO Molecular Function Annotations 2023	1.0	null
HCC364	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.55101
HCC4017	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.910287
ARGFX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.1343
K-562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.90514
Seminal plasma	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.076
TAL1::TCF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.0
Lhx8	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	27.5526
ATF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.5813
SOX21	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	54.9648
NCI-H1793	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.37267
LXF-289	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.90514
MON	DepMap CRISPR Gene Dependency	1.0	2.15115
Dlx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.2934
Ppara	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	21.7246
no abnormal phenotype detected	MGI Mouse Phenotype Associations 2023	1.0	null
Prdm4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	21.4513
Outer membrane protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.614
POU2F1::SOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.7131
MONOMAC1	DepMap CRISPR Gene Dependency	1.0	6.6222
TK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.97328
tunica media	GAD Gene-Disease Associations	1.0	null
OCI-M2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.12662
hsa-miR-3976	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
Endometrial luminal epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.74
ESR1	JASPAR Predicted Transcription Factor Targets	1.0	null
ATOH7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.4478
Beta defensins	Reactome Pathways 2014	1.0	null
Tunica Media	dbGAP Gene-Trait Associations	1.0	0.172782
chemoattractant activity	GO Molecular Function Annotations 2025	1.0	null
CL11	CCLE Cell Line Gene CNV Profiles	-1.0	-2.45698
HT1197	CCLE Cell Line Gene CNV Profiles	-1.0	-1.51445
multi-organism process	GO Biological Process Annotations 2015	1.0	null
A-431	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.2488
OSBPL9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.24545
defense response to bacterium	GO Biological Process Annotations 2023	1.0	null
Disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.137
cellular_component	GO Cellular Component Annotations 2015	1.0	null
E2F1-20622854-HELA-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
NDUFA1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.01001
Alx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	36.249
FOXD2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.2592
MAFK_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Male infertility	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.005
Nr1h2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	14.5394
HMY-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32096
COLO 205	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.29606
HOXA7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.574
NKX6-3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.5469
DLX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.6083
interleukin-5 receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.431
NCI-H650	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03232
Cauda epididymis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.755
Neuritis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.054
EVX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.4492
SNU-1040	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Rectal epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.615
EN2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.2604
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.99199
Caput epididymis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.754
EWSR1	ChEA Transcription Factor Targets	1.0	null
ZNF211	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.4194
IGR39	CCLE Cell Line Gene CNV Profiles	-1.0	-1.44923
Hoxd13	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	23.0077
SIX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.951
HS578T	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.946331
HCC70	DepMap CRISPR Gene Dependency	1.0	3.46527
COLO668	CCLE Cell Line Gene CNV Profiles	-1.0	-1.4705
response to biotic stimulus	GO Biological Process Annotations 2015	1.0	null
PRRX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.7465
UMUC16	DepMap CRISPR Gene Dependency	1.0	2.26352
HOXB2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.5975
SQ1	CCLE Cell Line Gene CNV Profiles	1.0	1.50576
MAFA	MotifMap Predicted Transcription Factor Targets	1.0	null
NCIH1573	CCLE Cell Line Gene CNV Profiles	-1.0	-1.52072
NR6A1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.2024
SK-MEL-28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.830379
chemoattractant activity	GO Molecular Function Annotations 2023	1.0	null
HOXB7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.6408
OVCA 420	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.858674
MGA::EVX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.2532
TCF7L2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.3508
Perturb_8671_KD_PKP2_SRP035559	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-20.0
POLR2A_GM12878_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
UCSD-242L	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.90514
Tuberculosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.083
response to bacterium	GO Biological Process Annotations 2015	1.0	null
hsa-miR-581	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
Central nervous system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
HCC461	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.50878
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-7247-01A-11R-2016-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
TCF7L1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.9826
H3K27me3_Brain Cingulate Gyrus	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
Epididymis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.449
PMC11982601-IMM-175-84-s005.xlsx-Fig5D_LPS-Innate_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
NANOG-19829295-ESCS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
hsa-miR-4775	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
POU5F1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.8909
HCC2885	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.12154
CatSper complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.045
Foxo1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	21.5319
Beta defensins	Reactome Pathways 2024	1.0	null
SCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07733
HCT-15	COSMIC Cell Line Gene Mutation Profiles	1.0	null
NCI-H1869	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.939692
SUM44PE	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	2.08408
LMX1A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.8126
CL-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.63613
Groin	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.699
MEF2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.7601
Hoxa13	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	22.6173
CCR6 chemokine receptor binding	GO Molecular Function Annotations 2025	1.0	null
COLO 792	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.60699
JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.3492
NEUROG1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.7541
response to stimulus	GO Biological Process Annotations 2015	1.0	null
VSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.2302
Sperm plasma membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.294
EP300	ENCODE Transcription Factor Targets	1.0	null
PAX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.3488
PHOX2B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	74.3484
hsa-miR-4668-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
EMX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.9449
TLX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.3226
JUND	JASPAR Predicted Transcription Factor Targets	1.0	null
EFM-192C	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.98603
Brain Lower Grade Glioma_LGG_TCGA-DU-7014-01A-11R-2027-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Corpus epididymis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.48
LHX5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.1368
20460173-ImmPortComprehensiveListofImmune-RelatedGenes	GeneSigDB Published Gene Signatures	1.0	null
RERF-LC-KJ	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.31957
MDAMB231	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.25138
Oral epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.574
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.173
DLX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.6772
JHUEM3	CCLE Cell Line Gene CNV Profiles	1.0	1.83388
Perturb_6583_KO_Setd1b_SRP308727	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-12.3925
HCC827	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.858674
MEL270	DepMap CRISPR Gene Dependency	1.0	22.7514
bp94	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.437
SU-DHL-6	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.55444
KURAMOCHI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.27735
SJCRH30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.29967
496100419_TCx_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	6.55771
abnormality of the cardiovascular system	GWASdb SNP-Phenotype Associations	1.0	0.048507
MDST8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.24548
496100420_PCx_probable Alzheimer's disease_no TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.69967
stomach	HPA Tissue Protein Expression Profiles	1.0	1.66045
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-3.64353
JUN-21703547-K562-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
CAMA-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23789