association	dataset	threshold value	standardized value
Kidney renal papillary cell carcinoma_KIRP_TCGA-Y8-A8S1-01A-11R-A37K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HOXB2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.7383
COLO205	CCLE Cell Line Gene CNV Profiles	-1.0	-1.48247
Innate Immune System	Reactome Pathways 2024	1.0	null
PMC11185762-media-2.xlsx-ATAC2wk_KD_V337M_intersect_peak-Symbol_AR	Rummagene Transcription Factor Associations 2026	1.0	null
KPNYS	DepMap CRISPR Gene Dependency	1.0	3.5644
JHUEM3	CCLE Cell Line Gene CNV Profiles	1.0	1.83388
HNF1A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	96.0371
SJCRH30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.29967
H376	DepMap CRISPR Gene Dependency	1.0	4.44821
Uterine epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.585
COLO 792	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.60699
COLO668	CCLE Cell Line Gene CNV Profiles	-1.0	-1.4705
NO11	DepMap CRISPR Gene Dependency	1.0	3.99475
Decidua parietalis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.819
TCF7L2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.926
HCC1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.05855
HOXC8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.7623
Aphthous stomatitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.127
NCI-H209	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.27694
NFIL3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.642
PE01	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.37329
NKX6-1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.2324
MDAMB231	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.46232
ZNF354A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	71.8924
ALX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.9139
HOXD4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.3698
POU2F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.933
THOC2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.11415
HOXA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.84
MDST8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.24548
MEOX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.3932
NKX6-2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.7724
metabolic	GAD High Level Gene-Disease Associations	1.0	0.298214
GBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.7926
Central nervous system disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.894
TRPS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.9075
cellular_component	LOCATE Predicted Protein Localization Annotations	1.0	null
STAT3_MCF 10A_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-B8-5546-01A-01R-1541-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RH30	DepMap CRISPR Gene Dependency	1.0	2.4304
Body Mass Index	dbGAP Gene-Trait Associations	1.0	0.494295
SNU-423	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.22152
MEL270	DepMap CRISPR Gene Dependency	1.0	7.80219
EPLC-272H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.840141
PDX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.2346
Activin AB complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.633
MAFK_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MAFK_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PSN1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.936877
MM485	DepMap CRISPR Gene Dependency	1.0	2.4661
MEC2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.45943
CHD1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Uterine epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.388
TBXT	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.5125
MEOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.062
HT1197	CCLE Cell Line Gene CNV Profiles	-1.0	-1.51445
VMRC-LCD	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.892827
GATA6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.2886
HOXB7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.6654
CPC-N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.36702
BICR16	DepMap CRISPR Gene Dependency	1.0	8.006
MDA-MB-415	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.972191
ESRRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.0073
MFE-319	COSMIC Cell Line Gene Mutation Profiles	1.0	null
thought	GeneRIF Biological Term Annotations	1.0	null
HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.3079
UM-UC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.910287
JUN-21703547-K562-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
HESX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.5259
HCC1493	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.94337
multi-organism process	GO Biological Process Annotations 2015	1.0	null
PSMG3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.2836
cellular_component	GO Cellular Component Annotations 2015	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-BB-A6UM-01A-12R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NURR1	MotifMap Predicted Transcription Factor Targets	1.0	null
Body Weight Changes	dbGAP Gene-Trait Associations	1.0	0.294545
LMX1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.4934
defense response to other organism	GO Biological Process Annotations 2015	1.0	null
HCC1599	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.68314
CAPAN-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.29606
MIXL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.731
NCI-H446	COSMIC Cell Line Gene Mutation Profiles	1.0	null
M059K	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.30499
RAX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.6471
ONECUT3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	53.3653
extracellular region	LOCATE Predicted Protein Localization Annotations	1.0	null
HCC1897	CCLE Cell Line Gene CNV Profiles	-1.0	-1.76987
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.12154
MNX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.738
Breast size	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.530103
AP-1	MotifMap Predicted Transcription Factor Targets	1.0	null
SK-BR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03814
EMX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.9083
v91	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.984
LHX5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.1904
CW-2	COSMIC Cell Line Gene Mutation Profiles	1.0	null
A-431	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.2488
testis	HPA Tissue Protein Expression Profiles	1.0	0.959343
defense response to bacterium	GO Biological Process Annotations 2015	1.0	null
NOTO	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.8432
ZR7530	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.818091
MG63	DepMap CRISPR Gene Dependency	1.0	2.79818
Specific developmental disorder	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.2
STAT3_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07733
CDX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.8442
BARX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	52.5603
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-3.64353
FOXL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.1081
FOS::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.775
POU5F1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.731
NCI-H358	COSMIC Cell Line Gene Mutation Profiles	1.0	null
KYSE150	CCLE Cell Line Gene CNV Profiles	-1.0	-1.32357
Developmental disorder of mental health	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.2
DUX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.9028
PAX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.775
VAX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.6457
OVKATE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.69521
HUT78	CCLE Cell Line Gene CNV Profiles	1.0	1.36451
Aortic body	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.697
HOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.5715
VAX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.3868
ZNF136	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	50.4077
Corpus epididymis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.977
Endocervix	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.916
MAFA	MotifMap Predicted Transcription Factor Targets	1.0	null
HOXC4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.1456
HCC4006	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.44905
Beta defensins	Reactome Pathways 2014	1.0	null
CUX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.5316
H3K27me3_K562_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RBM28	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.13269
HOXB4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.1361
HCC38	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.815376
ISL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	12.8965
Cervical mucus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.036
Attention deficit hyperactivity disorder	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.2
HSC-3	COSMIC Cell Line Gene CNV Profiles	1.0	4.51153
GBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.3696
MEIS2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.9769
ERF::FOXO1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.7766
HCC38	CCLE Cell Line Gene CNV Profiles	-1.0	-1.35752
HCC1576	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.89956
Immune System	Reactome Pathways 2014	1.0	null
U-937	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.78933
MOLP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.840141
HLF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.5323
SOX15	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.0584
SOX9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.7105
KM12	COSMIC Cell Line Gene Mutation Profiles	1.0	null
20460173-ImmPortAntimicrobials	GeneSigDB Published Gene Signatures	1.0	null
ZNF184	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.908
BT20	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.832182
POU3F4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.7616
MAFK	ENCODE Transcription Factor Targets	1.0	null
C80	DepMap CRISPR Gene Dependency	1.0	4.46614
IKZF1_01_138	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	2.60522
RAX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.5545
HCC364	CCLE Cell Line Gene CNV Profiles	-1.0	-1.96657
Mastitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.312
TK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.97328
Liver hepatocellular carcinoma_LIHC_TCGA-G3-A7M6-01A-11R-A33R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
YSCCC	DepMap CRISPR Gene Dependency	1.0	2.31639
thyroid gland	HPA Tissue Protein Expression Profiles	1.0	1.66218
PMC11982601-IMM-175-84-s005.xlsx-Fig5D_LPS-Innate_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
COLO 206F	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.44378
PPARG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.4643
MEF2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.4963
NCI-H1666	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.839142
PBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.7048
MKN-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.90514
A549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.910287
COLO 201	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07666
EN1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.9871
BARHL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.6258
LXF-289	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.90514
ERF::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.2
MYF6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.4883
body weight changes	GAD Gene-Disease Associations	1.0	null
JUN-21703547-K562-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
NCI-H847	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GATA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.2465
NCI-H1793	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.37267
CDX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.9398
LHX9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.0669
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
C3A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.830552
Uterine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.61
FOXD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	74.2918
EM2	CCLE Cell Line Gene CNV Profiles	1.0	1.81335
STAT3	ENCODE Transcription Factor Targets	1.0	null
SMAD2/3-21741376-EPCS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
NCO2	CCLE Cell Line Gene CNV Profiles	1.0	1.39497
PMC8202205-NIHMS1706275-supplement-Table_S1.xlsx-Def_End_D4_GATA6-dependent-ENSEMBL_GATA6	Rummagene Transcription Factor Associations 2026	1.0	null
response to external stimulus	GO Biological Process Annotations 2015	1.0	null
SCLC-22H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.939692
PANC0327	CCLE Cell Line Gene CNV Profiles	1.0	1.60451
MEF2B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.2302
MDA-MB-330	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03339
KU812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.89956
POU4F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	52.3188
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.173
ATF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.0019
Kidney renal papillary cell carcinoma_KIRP_TCGA-BQ-7050-01A-11R-1965-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SQ1	CCLE Cell Line Gene CNV Profiles	1.0	1.50576
NCI-H1792	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.32304
SA1-27219007-CHIP-SEQ-ERYTHROID-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
SW620	COSMIC Cell Line Gene Mutation Profiles	1.0	null
MEIS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.6323
Primosome complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.048
PRRX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.0071
ASH3	DepMap CRISPR Gene Dependency	1.0	2.00891
TAL1::TCF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.2045
NCIH2172	CCLE Cell Line Gene CNV Profiles	1.0	1.79405
PFAPA syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.917
ESX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.5116
SHOX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.2445
HUG1N	CCLE Cell Line Gene CNV Profiles	1.0	1.68778
PRRX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.4621
PMC8423434-mmc7.xlsx-SOX2_Primed-Genes_n_3042_SOX2	Rummagene Transcription Factor Associations 2026	1.0	null
Bpe	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.552
ECGI10	CCLE Cell Line Gene CNV Profiles	1.0	1.59855
NF-kappaB p50/p65 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.834
PHOX2B-30127528-KELLY-HUMAN-BRAINNEUROBLASTOMA	ChEA Transcription Factor Targets 2022	1.0	null
SIX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8998
extracellular region	GO Cellular Component Annotations 2015	1.0	null
BT549	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.56302
HPAFII	DepMap CRISPR Gene Dependency	1.0	4.19328
BL70	DepMap CRISPR Gene Dependency	1.0	2.07219
HOXC13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.2977
encoded	GeneRIF Biological Term Annotations	1.0	null
NR2F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.8707
KMRC3	DepMap CRISPR Gene Dependency	1.0	6.56198
PMC11255700-JAH3-13-e033544-s001.pdf-29-ELK1_ELK1	Rummagene Transcription Factor Associations 2026	1.0	null
DMRTA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.1934
CL11	CCLE Cell Line Gene CNV Profiles	-1.0	-2.45698
NCIN87	CCLE Cell Line Gene CNV Profiles	-1.0	-2.30296
HEP G2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02626
184A1N4	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.996802
Caput epididymis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.752
extracellular region	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
PMC9327205-11658_2022_358_MOESM7_ESM.xlsx-K562-BP1-Symbol_1_DLX4	Rummagene Transcription Factor Associations 2026	1.0	null
SNU-484	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.27575
Neuro D	MotifMap Predicted Transcription Factor Targets	1.0	null
LBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.4196
SUM159PT	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.2679
FOXC1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.2556
HOXA5	JASPAR Predicted Transcription Factor Targets	1.0	null
Vaginal mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.84
SU-DHL-6	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.55444
STAT1-20625510-HELA-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
FOSL1::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.022
HCC4006	CCLE Cell Line Gene CNV Profiles	-1.0	-1.70843
DLX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.0851
response to external biotic stimulus	GO Biological Process Annotations 2015	1.0	null
H2AFZ_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
LBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.2942
HUPT4	DepMap CRISPR Gene Dependency	1.0	2.69743
LHX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.1193
HSC3	CCLE Cell Line Gene CNV Profiles	1.0	3.2803
POU3F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.2429
G111	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.13315
ZNF652	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.8877
Body mass index	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.6
UMUC10	DepMap CRISPR Gene Dependency	1.0	2.06977
ETS2	MotifMap Predicted Transcription Factor Targets	1.0	null
UW228	DepMap CRISPR Gene Dependency	1.0	2.07191
Disease of mental health	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.2
HOXA6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.3059
DMRTC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.35
NCI-H2172	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.86938
Prostate adenocarcinoma_PRAD_TCGA-HC-7740-11A-01R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
EVX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.5844
SUDHL8	CCLE Cell Line Gene CNV Profiles	1.0	1.47528
Innate Immune System	Reactome Pathways 2014	1.0	null
UMC-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.893889
KURAMOCHI	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
KYSE-150	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2565
DAN-G	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03339
A-375	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.858674
biological_process	GO Biological Process Annotations 2015	1.0	null
Uterine endometrial epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.274
COLO741	CCLE Cell Line Gene CNV Profiles	1.0	1.66505
GSC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.4887
TBR1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.7258
Brain Lower Grade Glioma_LGG_TCGA-S9-A6WL-01A-21R-A33Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PAX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	57.7402
COLO 205	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.29606
Merocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.546
HCC4017	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.910287
PK1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.54982
HOXA3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.0471
U2904	DepMap CRISPR Gene Dependency	1.0	2.9943
BCL6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.5337
response to other organism	GO Biological Process Annotations 2015	1.0	null
K-562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.90514
HCC2885	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.12154
EZH2_mammary epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mt3	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.981
PHOX2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	74.6663
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.910287
JUN	ChEA Transcription Factor Targets	1.0	null
Tectum mesencephali	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.353
ML1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.45887
SCC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.27694
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.99199
ZNF680	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.2882
EW1	DepMap CRISPR Gene Dependency	1.0	2.18378
NCIH1793	CCLE Cell Line Gene CNV Profiles	-1.0	-1.56871
NCI-H1869	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.939692
Acid phosphatase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.117
NCIH2286	CCLE Cell Line Gene CNV Profiles	-1.0	-1.70645
MSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.1951
ELK1_01_162	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	-1.0	-0.60859
GSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.624
HCC202	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.617349
RRP9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.32243
NCI-H1573	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.88413
CL-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.63613
UMUC6	DepMap CRISPR Gene Dependency	1.0	2.39708
ETK-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
HN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05899
20460173-ImmPortComprehensiveListofImmune-RelatedGenes	GeneSigDB Published Gene Signatures	1.0	null
HOXA4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.1486
POU3F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	53.3755
ZNF667	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.8609
HOXB3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.2348
PL-21	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.872538
NFKB1-27076634-BEAS2B-HUMAN-LUNG-INFLAMMATION	ChEA Transcription Factor Targets 2022	1.0	null
NCI-H196	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.830552
Restless legs syndrome	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.894
GR-M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.858674
CAMA-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23789
Jejunal mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.14
SOX21	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	63.366
SW1783	CCLE Cell Line Gene CNV Profiles	-1.0	-2.14234
MDAMB436	CCLE Cell Line Gene CNV Profiles	-1.0	-1.38544
SLR20	DepMap CRISPR Gene Dependency	1.0	2.20949
HCC827	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.858674
ESRRB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.8278
HCC38	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.29606
neurological	GAD High Level Gene-Disease Associations	1.0	0.293278
MOGGUVW	DepMap CRISPR Gene Dependency	1.0	2.46066
FOXB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	71.8791
Prostate adenocarcinoma_PRAD_TCGA-EJ-7794-11A-01R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
UNCX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.7279
PANC 02.03	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.33371
496100627_TCx_no dementia_TBI_86_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	18.7567
OTX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.3529
SG231	DepMap CRISPR Gene Dependency	1.0	2.36091
Eccrine sweat gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.546
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.840141
SIX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.5725
SUM44PE	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.34925
A-498	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.33371
OCI-M2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.12662
IGR39	CCLE Cell Line Gene CNV Profiles	-1.0	-1.44923
FOXD2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	62.6244
BARHL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.1361
Glomus cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.724
MEL-HO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.839142
VSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.1427
HNF1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.443
Vestibulum vaginae	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.152
GATA2	JASPAR Predicted Transcription Factor Targets	1.0	null
CDX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.9204
NR4A1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.8226
PMC5770158-elife-31706-supp3.xls-ISL1_target_regions-Nearest_gene_1_ISL1	Rummagene Transcription Factor Associations 2026	1.0	null
NCIH661	CCLE Cell Line Gene CNV Profiles	1.0	1.42729
duodenum	HPA Tissue Protein Expression Profiles	1.0	1.66218
ARGFX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.6396
ZNF35	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.7253
Discoidal high-density lipoprotein particle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.689
ATF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.2958
JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.8624
KPL-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.895811
VSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.4207
SCC-9	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.829757
HPAC	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.911098
Nervous system disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.894
HCC364	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.55101
POU2F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.917
DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.3956
PMC6499311-supp_gr.243345.118_Supplemental_Table_S8.xlsx-S8C_Het1A-HNF4A_2d_5x_closed-Nearest_Ensembl_HNF4A	Rummagene Transcription Factor Associations 2026	1.0	null
NR4A2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.9441
cellular_component	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
ZNF8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.6796
H3K27me3_SK-N-SH_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POU5F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.3502
RB1_KD_GSE50532_627_human_OSTEOBLASTS	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
POU2F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.9647
ZNF766	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.8405
CEBPG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.3494
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4981-01A-01R-1334-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HCC78	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.890901
COLO 829	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07666
HCC1419	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.851233
Sperm plasma membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.774
Head and Neck squamous cell carcinoma_HNSC_TCGA-UF-A71A-01A-22R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
TT	CCLE Cell Line Gene CNV Profiles	1.0	2.24246
CAPAN2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.63392
BECKER	DepMap CRISPR Gene Dependency	1.0	9.91857
JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.086
THP-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.27694
Cervical canal	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.719
PROP1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	102.082
SPIC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.1384
LB647-SCLC	COSMIC Cell Line Gene Mutation Profiles	1.0	null
EZH2_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
FOXE1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	72.3785
NCI-H1975	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.910287
DLX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.4614
FLI1::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.7211
T3M4	DepMap CRISPR Gene Dependency	1.0	2.85684
HOXD9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.1114
HCC2814	CCLE Cell Line Gene CNV Profiles	-1.0	-1.41981
COLO792	CCLE Cell Line Gene CNV Profiles	-1.0	-1.94358
Mucosal mast cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.547
MSC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.0562
LOX-IMVI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.839142
TEF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.7848
body mass index	GAD Gene-Disease Associations	1.0	null
POU4F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	65.4419
STAT1	ChEA Transcription Factor Targets	1.0	null
small intestine	HPA Tissue Protein Expression Profiles	1.0	1.66218
Prostate adenocarcinoma_PRAD_TCGA-HC-7737-11A-02R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SNG-M	COSMIC Cell Line Gene Mutation Profiles	1.0	null
EFM-192C	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.98603
CDKN1A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.49067
HOS	CCLE Cell Line Gene CNV Profiles	1.0	1.58005
DUXA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	66.5162
POLR2AphosphoS2_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PANC 03.27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.90514
POU1F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	70.6053
NCI-H920	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.3922
BCL6B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	52.8949
PHOX2B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	105.107
OVKATE	CCLE Cell Line Gene CNV Profiles	-1.0	-2.18907
Type IV pilus	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.689
Western dietary pattern	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.739794
PMC10123531-NIHMS1874945-supplement-Table_S6.xlsx-SOX2_BCAT_cobound_peaks-Gene_Name_SOX2	Rummagene Transcription Factor Associations 2026	1.0	null
RERFLCAI	DepMap CRISPR Gene Dependency	1.0	2.00281
GATA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.0927
PSMC3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.10003
VCAP	CCLE Cell Line Gene CNV Profiles	1.0	1.78078
Pharyngitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.35
SCLC-21H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11231
FOXO1::ELF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.9111
HOXA7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.0079
HBL-100	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.839142
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-5001-01A-01R-1334-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
EVX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.268
Brain Lower Grade Glioma_LGG_TCGA-TM-A84R-01A-21R-A36H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
response to stress	GO Biological Process Annotations 2015	1.0	null
HCC1937	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.674092
NCI-H510A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.41142
MEF2D	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	58.9551
NRL	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.4996
Nasal vestibule	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.996
cardiovascular	GAD High Level Gene-Disease Associations	1.0	0.303208
EZH2	ENCODE Transcription Factor Targets	1.0	null
RH41	CCLE Cell Line Gene CNV Profiles	-1.0	-1.38948
POU3F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	64.684
Disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.2
Ischial spine	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.521
TBX19	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.0564
MG63	CCLE Cell Line Gene CNV Profiles	1.0	2.59999
TLX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.1809
Overweight status	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.604576
FOXC1	JASPAR Predicted Transcription Factor Targets	1.0	null
COLO 741	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19394
pre-primosome complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.657
SUM1315MO2	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.981616
RB1_KD_GSE50532_656_human_OSTEOBLASTS	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
OVCA 420	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.858674
Decidua basalis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.567
response to bacterium	GO Biological Process Annotations 2015	1.0	null
DnaB helicase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.172
Tonsillitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.476
IM95	DepMap CRISPR Gene Dependency	1.0	7.58629
LMX1A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.9066
STAT1-20625510-HELA-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
HOXB5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.4455
POU6F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.2252
EMX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.1053
CAMA1	CCLE Cell Line Gene CNV Profiles	1.0	1.42828
EFM-192A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.839142
MGA::EVX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.5915
WM793B	COSMIC Cell Line Gene Mutation Profiles	1.0	null
UCSD-242L	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.90514
EFM-19	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.5104
PAX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.5116
NCIH650	CCLE Cell Line Gene CNV Profiles	1.0	1.57489
CAOV3	CCLE Cell Line Gene CNV Profiles	1.0	1.83673
KURAMOCHI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.27735
NCI-H1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.58345
Cervical adenitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.72
NCI-H650	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03232
KCL-22	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Portio vaginalis cervicis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.962
PFSK1	DepMap CRISPR Gene Dependency	1.0	2.31751
Immune System	Reactome Pathways 2024	1.0	null
antimicrobial	GeneRIF Biological Term Annotations	1.0	null
SUDHL6	CCLE Cell Line Gene CNV Profiles	1.0	1.81817
A498	CCLE Cell Line Gene CNV Profiles	-1.0	-1.50605
PMC6744561-41467_2019_12125_MOESM7_ESM.xlsx-Normal_309_TCF7_rep1_sorted_pea-Gene_Name_TCF7	Rummagene Transcription Factor Associations 2026	1.0	null
CBC361 (MALT1)	NURSA Protein Complexes	1.0	null
Chemoreceptor cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.682
Disease of anatomical entity	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.894
FOXL1	JASPAR Predicted Transcription Factor Targets	1.0	null
HOXA10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.8761
NKX6-3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.555
Kidney renal papillary cell carcinoma_KIRP_TCGA-SX-A7SO-01A-11R-A355-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCI-H2170	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.858674
SATB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.5901
response to biotic stimulus	GO Biological Process Annotations 2015	1.0	null
PROX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.9854
CHD1	ENCODE Transcription Factor Targets	1.0	null
Beta-defensin	InterPro Predicted Protein Domain Annotations	1.0	null
HCC202	DepMap CRISPR Gene Dependency	1.0	2.7496
SK-MEL-28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.830379
HOXB8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.4638
SK-MEL-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16184
RBBP5_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC1599	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.9838
NCI-H1437	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.910287
POU4F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	72.4688
HMY-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32096
ONECUT1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.7187
PMC6499311-supp_gr.243345.118_Supplemental_Table_S8.xlsx-S8C_Het1A-HNF4A_2d_5x_closed-Gene_Name_HNF4A	Rummagene Transcription Factor Associations 2026	1.0	null
PMC7021771-41467_2020_14684_MOESM7_ESM.xlsx-CASZ1_ChIPseq_in_SMS-CTR_MEKi-Gene_Name_CASZ1	Rummagene Transcription Factor Associations 2026	1.0	null
TCF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.1801
Antimicrobial peptides	Reactome Pathways 2024	1.0	null
defense response	GO Biological Process Annotations 2015	1.0	null
ZNF558	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	165.469
GTL-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.90514
U937	CCLE Cell Line Gene CNV Profiles	1.0	2.14784
EVSA-T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23606
NCI-N87	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.48095
HCC461	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.50878
RBBP5	ENCODE Transcription Factor Targets	1.0	null
RERF-LC-KJ	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.31957
rectum	HPA Tissue Protein Expression Profiles	1.0	1.66218
FOXH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.6052
PMC9378714-41467_2022_31999_MOESM10_ESM.xlsx-Supplementary_Data_7-Supplementary_Data_7_Collation_of_genes_possible_regulated_or_co-expressed_with_ELF5_ELF5	Rummagene Transcription Factor Associations 2026	1.0	null
Beta defensins	Reactome Pathways 2024	1.0	null
ISTMEL1	DepMap CRISPR Gene Dependency	1.0	14.3291
Defensins	Reactome Pathways 2024	1.0	null
response to stimulus	GO Biological Process Annotations 2015	1.0	null
CBC582 (KDM5C)	NURSA Protein Complexes	1.0	null
ISX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.4611
SNRPG	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.3201
MEF2C	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	49.2675
Brain Lower Grade Glioma_LGG_TCGA-DH-5143-01A-01R-1470-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.8842
MSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.7516
PMC12885947-44386_2025_32_MOESM1_ESM.pdf-23-ZNF469_ZNF469	Rummagene Transcription Factor Associations 2026	1.0	null
TUHR14TKB	CCLE Cell Line Gene CNV Profiles	-1.0	-1.6889
HOXD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.1774
NB7	DepMap CRISPR Gene Dependency	1.0	3.84729
ZNF157	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.847
PMC7021771-41467_2020_14684_MOESM7_ESM.xlsx-CASZ1_ChIPseq_in_SMS-CTR_MEKi-Nearest_Ensembl_CASZ1	Rummagene Transcription Factor Associations 2026	1.0	null
KP-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.910287
NCIH1573	CCLE Cell Line Gene CNV Profiles	-1.0	-1.52072
Epididymal epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.666
GATA4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.6435
SNU-475	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03901
IRF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	58.1347
MB1	DepMap CRISPR Gene Dependency	1.0	2.95372
display	GeneRIF Biological Term Annotations	1.0	null
POU6F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.4846
SU-DHL-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09075
Defensins	Reactome Pathways 2014	1.0	null
GSC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.3182
LHX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.6529
PMC8202205-NIHMS1706275-supplement-Table_S1.xlsx-Def_End_D4_GATA6-dependent-SYMBOL_GATA6	Rummagene Transcription Factor Associations 2026	1.0	null