association	dataset	threshold value	standardized value
HCC364	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.5489
RCC10RGB	DepMap CRISPR Gene Dependency	1.0	2.48769
NEUROG2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.4706
HOXB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.1659
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.17006
VAX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.2105
KYSE150	DepMap CRISPR Gene Dependency	1.0	2.23718
PMC12315868-Supplemental_Data_S1.xlsx-Supplemental_Data_S1F-TP53_TP53	Rummagene Transcription Factor Associations 2026	1.0	null
Stat5a::Stat5b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	24.8039
PMC9378714-41467_2022_31999_MOESM10_ESM.xlsx-Supplementary_Data_7-Supplementary_Data_7_Collation_of_genes_possible_regulated_or_co-expressed_with_ELF5_ELF5	Rummagene Transcription Factor Associations 2026	1.0	null
OC-314	COSMIC Cell Line Gene Mutation Profiles	1.0	null
small intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.315861
response to external stimulus	GO Biological Process Annotations 2015	1.0	null
Beta-defensin	InterPro Predicted Protein Domain Annotations	1.0	null
Hoxd13	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	24.3666
Beta defensins	Reactome Pathways 2024	1.0	null
UM-UC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.902959
FOXE1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	58.4394
SUDHL6	CCLE Cell Line Gene CNV Profiles	1.0	1.82161
Msx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.9831
EFM-192C	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.979457
ONECUT1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.7287
Arx	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	46.0601
PL-21	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.844797
HOXD11	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.2333
Epitheliocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.934
NCI-H1573	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.88484
ARGFX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.1123
COLO792	CCLE Cell Line Gene CNV Profiles	-1.0	-1.94358
Heterotrimeric G-protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.981
DAOY cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.561
nitric-oxide synthase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.574
embryonic structure	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057149
tissues, cell types and enzyme sources	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
GTL-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.875167
Rumen	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.887
HOXB5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.565
Foxj2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	24.1766
JUN-21703547-K562-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
TEAD4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.784
Dmbx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	24.9367
RELA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.2222
PANC 03.27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.875167
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052002
HCC364	CCLE Cell Line Gene CNV Profiles	-1.0	-1.96657
ZNF76	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.0957
FOXD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	87.5262
ZNF75A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.4423
HCC38	CCLE Cell Line Gene CNV Profiles	-1.0	-1.35752
SK-BR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03244
gastrointestinal tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059301
Photoreceptor distal connecting cilium	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.135
PDX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.2707
defense response	GO Biological Process Annotations 2015	1.0	null
Vas deferens	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.956
RBM15B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.19351
LXF-289	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.875167
Sox1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	82.9089
A498	CCLE Cell Line Gene CNV Profiles	-1.0	-1.50605
MDST8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.24359
HUG1N	CCLE Cell Line Gene CNV Profiles	1.0	1.69714
VAX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.2588
TDOTT	DepMap CRISPR Gene Dependency	1.0	16.3631
NURR1	MotifMap Predicted Transcription Factor Targets	1.0	null
germinal epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.995425
PA1	DepMap CRISPR Gene Dependency	1.0	2.10511
response to biotic stimulus	GO Biological Process Annotations 2015	1.0	null
ZKSCAN1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.7772
GSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.0213
DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.5883
sodium:potassium-exchanging ATPase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.651
ALX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.2061
S117	DepMap CRISPR Gene Dependency	1.0	2.07666
ZNF652	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.1403
HMBOX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.1277
PAX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.2093
Alx4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	49.2084
SNRPG	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.3201
Antimicrobial peptides	Reactome Pathways 2024	1.0	null
RH28	DepMap CRISPR Gene Dependency	1.0	4.32423
HOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.5459
RBPJ	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.6848
SU-DHL-6	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.50161
ZNF582	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.9898
FOXD2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.6895
Hajdu-Cheney syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.123
ASPC1	DepMap CRISPR Gene Dependency	1.0	2.82017
PITX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.9563
HPAC	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.903776
encoded	GeneRIF Biological Term Annotations	1.0	null
Oviduct epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.03
20460173-ImmPortAntimicrobials	GeneSigDB Published Gene Signatures	1.0	null
MSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.515
HCC4017	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.902959
GSE247764_1_v_2_nell2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
NCIH1573	CCLE Cell Line Gene CNV Profiles	-1.0	-1.52072
biological_process	GO Biological Process Annotations 2015	1.0	null
VSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.9766
defense response to other organism	GO Biological Process Annotations 2015	1.0	null
UNCX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.1017
SOX8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.9794
CDX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.5359
interleukin-20 receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.291
Winchester syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.421
ISL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	12.8965
PXR (PXR:RXR)	MotifMap Predicted Transcription Factor Targets	1.0	null
stomach	HPA Tissue Protein Expression Profiles	1.0	1.10246
RPMI7951	DepMap CRISPR Gene Dependency	1.0	2.03247
cation-transporting ATPase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.629
NCI-H920	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.39117
SJSA1	DepMap CRISPR Gene Dependency	1.0	7.20459
SNU-484	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.22878
Secondary spermatocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.567
FOXA3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.3108
SATB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.9592
Dlx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.2428
respiratory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.337608
HN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0217
MEOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.38
Brain	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
ZNF667	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.5444
JUN	ChEA Transcription Factor Targets	1.0	null
BRCA1	JASPAR Predicted Transcription Factor Targets	1.0	null
GR-M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.851128
epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052074
ISX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.1938
Defensins	Reactome Pathways 2014	1.0	null
HESX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.0533
FOS_MCF 10A_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
response to external biotic stimulus	GO Biological Process Annotations 2015	1.0	null
COLO 829	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07171
Awn	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.933
SU-DHL-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05188
FOXP2_SK-N-MC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BICR10	DepMap CRISPR Gene Dependency	1.0	6.56701
ROCK_INHIBITION_GDS3944_462_mouse_Forebrain astrocytes - 6 Hours	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
Whole body	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
EZH2_fibroblast of dermis_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CAMA1	CCLE Cell Line Gene CNV Profiles	1.0	1.44959
RERF-LC-KJ	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.27228
FOXA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.2474
VCAP	CCLE Cell Line Gene CNV Profiles	1.0	1.78552
KU812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.83586
FOXP1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.2015
ZNF558	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	150.627
EN	COSMIC Cell Line Gene Mutation Profiles	1.0	null
SOX15	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.1913
A-375	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.851128
RH30	DepMap CRISPR Gene Dependency	1.0	2.4901
POLR2A_MCF 10A_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
FOXD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.85
GSE247764_5_v_2_nell2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GTPase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.96
EZH2	ENCODE Transcription Factor Targets	1.0	null
PRRX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.4216
NEUROD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.7585
NCIH1573	DepMap CRISPR Gene Dependency	1.0	2.94249
MEIS2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	57.1241
ZNF547	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.3867
extracellular region	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
PANC0327	CCLE Cell Line Gene CNV Profiles	1.0	1.62047
TCF12	ENCODE Transcription Factor Targets	1.0	null
A-431	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.24984
MEOX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.6088
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052032
NCIH661	CCLE Cell Line Gene CNV Profiles	1.0	1.44859
disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.040599
multi-organism process	GO Biological Process Annotations 2015	1.0	null
C-2 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.058
TCF12_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HOS	CCLE Cell Line Gene CNV Profiles	1.0	1.59771
CL11	DepMap CRISPR Gene Dependency	1.0	2.42942
SW579	DepMap CRISPR Gene Dependency	1.0	5.36023
Pityriasis versicolor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.169
TUHR14TKB	CCLE Cell Line Gene CNV Profiles	-1.0	-1.6889
animal	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
POU4F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	64.3189
OCI-M2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.08551
RAX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.7368
TLX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.6329
GSE140576_0_v_2_plag1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
HOXC11	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.2916
GBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.8369
KURAMOCHI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.27314
COLO205	CCLE Cell Line Gene CNV Profiles	-1.0	-1.48247
Gingival fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.885
Dux	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	15.1334
IALM	CCLE Cell Line Gene CNV Profiles	1.0	1.33928
DLX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8744
GSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.5053
POLR2A_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
LMX1A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.9593
SKLU1	CCLE Cell Line Gene CNV Profiles	1.0	1.33219
Caput epididymis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.528
EVX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.3173
GSE247764_4_v_2_nell2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
EM2	CCLE Cell Line Gene CNV Profiles	1.0	1.81693
KPL-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.866358
ZNF184	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.9319
NCIH1793	CCLE Cell Line Gene CNV Profiles	-1.0	-1.56871
alimentary canal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056225
response to bacterium	GO Biological Process Annotations 2015	1.0	null
SQ1	CCLE Cell Line Gene CNV Profiles	1.0	1.52854
A549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.902959
SUDHL5	DepMap CRISPR Gene Dependency	1.0	2.28037
Immune System	Reactome Pathways 2014	1.0	null
HMY-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.27367
extracellular region	LOCATE Predicted Protein Localization Annotations	1.0	null
Crx	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	14.6898
ETS2	MotifMap Predicted Transcription Factor Targets	1.0	null
MEF2C	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.8207
FOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.6125
PRDM1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.0102
OVCA 420	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.851128
CAPAN-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.29459
Corpus epididymis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.584
POU6F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.2915
SNU-423	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17582
TEAD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.5023
TEAD4_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PMC4858740-ncomms11473-s2.xls-HAdV-D9_Cr1b_Library_2-Hit_name_CENPX	Rummagene Transcription Factor Associations 2026	1.0	null
HCC4006	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.44739
plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.064749
SCLC-22H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.908044
Gingival disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.004
OVKATE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.69353
POU1F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.0365
NCI-H650	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.99564
NFIL3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.2916
NCIH2286	CCLE Cell Line Gene CNV Profiles	-1.0	-1.70645
crypt	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.70968
SW684	COSMIC Cell Line Gene Mutation Profiles	1.0	null
MDFI	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.01168
FOS	ENCODE Transcription Factor Targets	1.0	null
GSE247764_3_v_2_nell2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
CAPAN2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.63392
NCIN87	CCLE Cell Line Gene CNV Profiles	-1.0	-2.30296
PK1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.54982
HOXB4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.2401
GSE183994_1_v_0_scml2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
HCC1897	CCLE Cell Line Gene CNV Profiles	-1.0	-1.76987
H3K27ac_Brain Hippocampus Middle	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
Nobox	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	24.1579
Disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.011
KMS-26	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.35477
SF126	DepMap CRISPR Gene Dependency	1.0	3.55248
Histaminergic neuron	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.621
NCI-H1734	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.94425
IRF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	56.7483
Immune System	Reactome Pathways 2024	1.0	null
HUH6	DepMap CRISPR Gene Dependency	1.0	2.1973
COLO668	CCLE Cell Line Gene CNV Profiles	-1.0	-1.4705
Beta defensins	Reactome Pathways 2014	1.0	null
FOXP2	ENCODE Transcription Factor Targets	1.0	null
integument	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051461
HOXA10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.8915
MG63	CCLE Cell Line Gene CNV Profiles	1.0	2.59999
HCC1576	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.83586
plant form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.323509
CAMA-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19162
cellular_component	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
NCIH1355	DepMap CRISPR Gene Dependency	1.0	2.5343
Hindbrain	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
NCI-H209	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.22996
Prostate adenocarcinoma_PRAD_TCGA-J4-A67S-01A-11R-A30B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Central nervous system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
FOXL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.5291
skeletal muscle	HPA Tissue Protein Expression Profiles	1.0	1.10246
Sec61 translocon complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.549
MSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.8343
EFM-19	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.4589
CAOV3	CCLE Cell Line Gene CNV Profiles	1.0	1.83956
PHOX2B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	67.7967
Tonsillitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.333
Tooth bud	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.63
HOXB2::ELK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.4343
Atoh1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	45.3299
Cytoplasmic side of plasma membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.974
FOS_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HSC3	CCLE Cell Line Gene CNV Profiles	1.0	3.2803
cellular_component	GO Cellular Component Annotations 2015	1.0	null
Brain stem	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
EP300	ENCODE Transcription Factor Targets	1.0	null
tissues, cell types and enzyme sources	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
ESX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.6286
NCI-H1793	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.37128
heart muscle	HPA Tissue Protein Expression Profiles	1.0	1.10246
defense response to bacterium	GO Biological Process Annotations 2015	1.0	null
PRRX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.0931
CL11	CCLE Cell Line Gene CNV Profiles	-1.0	-2.45698
PE01	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.3719
Photoreceptor connecting cilium	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.107
HCC78	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.88347
Arid3a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	29.7778
THP-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.22996
UCSD-242L	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.875167
ZNF35	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.2414
J82	DepMap CRISPR Gene Dependency	1.0	2.69244
EVSA-T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.18984
HS936T	DepMap CRISPR Gene Dependency	1.0	2.08597
MYF6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.357
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
8305C	DepMap CRISPR Gene Dependency	1.0	2.70864
POU3F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.4896
Dlx4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.5985
Sox11	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	23.9803
FOXP4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.1361
NKX6-3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.5033
20460173-ImmPortComprehensiveListofImmune-RelatedGenes	GeneSigDB Published Gene Signatures	1.0	null
OVKATE	CCLE Cell Line Gene CNV Profiles	-1.0	-2.18907
NCI-H1437	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.902959
PSN1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.929765
NRL	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.3536
DB	DepMap CRISPR Gene Dependency	1.0	2.02768
lateral ventricle	HPA Tissue Protein Expression Profiles	1.0	0.720281
SRY	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.0
FOXK2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.2101
interleukin-12 receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.531
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.902959
HUT78	CCLE Cell Line Gene CNV Profiles	1.0	1.38331
Periodontal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.217
EVX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.5476
H2AFZ_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MEF2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	58.7779
EHEB	COSMIC Cell Line Gene Mutation Profiles	1.0	null
SOX21	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.5781
COLO 792	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.60486
VSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.7831
NCI-H1435	COSMIC Cell Line Gene Mutation Profiles	1.0	null
MSC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.375
BARX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.1054
POU6F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.8863
NKX6-1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.5238
tonsil	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.951685
response to stress	GO Biological Process Annotations 2015	1.0	null
LHX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.5721
EZH2_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Atf3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	16.6434
Lhx8	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	14.2268
EMX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.9528
GSE92614_1_v_0_pten_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Pax7	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	33.7946
EMX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.6176
HEP G2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.989757
Metencephalon	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
viscus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052482
FOXC1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	63.9932
NCI-N87	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.47914
Nfat5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	23.8708
COLO 206F	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.44214
TFAP4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.4558
DAN-G	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02761
Hmga1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	73.1558
Innate Immune System	Reactome Pathways 2024	1.0	null
Extrinsic component of cytoplasmic side of plasma membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.98
TT	CCLE Cell Line Gene CNV Profiles	1.0	2.24246
KP-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.902959
SUM149PT	DepMap CRISPR Gene Dependency	1.0	2.11982
U-937	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.72595
bf2	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.716
NOTO	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.3629
Sarcoma_SARC_TCGA-DX-A6Z2-01A-12R-A36F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HDAC3_KO_GDS4886_29_mouse_heart - 6 week old	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
Periodontitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.093
HOXC12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.7691
MEF2B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	54.425
lymphoid tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.066658
Defensins	Reactome Pathways 2024	1.0	null
ETV5::DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.6253
HOXA3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.285
NCI-H2171	COSMIC Cell Line Gene Mutation Profiles	1.0	null
PMC11982601-IMM-175-84-s005.xlsx-Fig5D_LPS-Innate_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
PRPF19	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.28571
TCF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.098
HS 940.T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.15285
extracellular region	GO Cellular Component Annotations 2015	1.0	null
HCC1493	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.94404
Neuro D	MotifMap Predicted Transcription Factor Targets	1.0	null
ZNF680	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.8236
UMC-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.864557
EN1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.3706
HCC4006	CCLE Cell Line Gene CNV Profiles	-1.0	-1.70843
KURAMOCHI	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
HDAC3_KO_GDS4886_66_mouse_Heart	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
HCC461	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.45736
HCC38	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.29459
LMX1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.4611
SHOX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.5542
Sperm plasma membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.66
HCC1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.0581
DMRTA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.3812
SK-MEL-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11918
NCI-H1869	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.908044
Lateral ventricle	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
HCC2814	CCLE Cell Line Gene CNV Profiles	-1.0	-1.41981
NIHOVCAR3	DepMap CRISPR Gene Dependency	1.0	4.54544
NCI-H510A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.36292
FOXB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.8567
Shox2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.9545
NB17	DepMap CRISPR Gene Dependency	1.0	5.00112
POU4F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	63.64
HNF1A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	62.3775
RAX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.0576
HCC2885	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.12012
Pou5f1::Sox2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	31.7924
Cerebellum	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
H3K4me2_CD14-positive monocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
MOGGUVW	DepMap CRISPR Gene Dependency	1.0	2.20911
HOXD12::ELK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.5572
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.97417
Arid3b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	32.4115
H3K4me1_H1-hESC_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
M059K	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.25772
intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.063982
SOX18	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.3517
NCI-H820	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Gingival epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.707
Signal peptidase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.916
TP63	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.984
CHD1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K9me3_Adipose Derived Mesenchymal Stem Cell Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
Innate Immune System	Reactome Pathways 2014	1.0	null
Superficial mycosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.11
HOXA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.3466
Arid5a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	45.4784
Foxj3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	37.8749
interleukin-10 receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.507
CHD1	ENCODE Transcription Factor Targets	1.0	null
CDX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.0857
SEPTIN7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.22873
Cervical mucus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.234
MEF2D	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	62.6421
Nervous system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
HOXB7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.6275
TAL1::TCF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.0909
IGR-37	COSMIC Cell Line Gene Mutation Profiles	1.0	null
FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.7196
SCLC-21H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07189
COLO 201	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07171
UPCISCC152	DepMap CRISPR Gene Dependency	1.0	2.14532
NCI-H1792	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.32168
MEC2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.45943
COLO741	CCLE Cell Line Gene CNV Profiles	1.0	1.67587
NCO2	CCLE Cell Line Gene CNV Profiles	1.0	1.41532
Gorham's disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.11
BAT3 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.039
FOXO6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.9798
IGROV-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
DMRTA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.3475
NFE2L2-22581777-LYMPHOBLASTOID-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
DUXA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.5461
FOXO4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.2872
POU3F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.0246
IGR39	CCLE Cell Line Gene CNV Profiles	-1.0	-1.44923
SJCRH30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.29823
HOXD9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.3833
ETV2::DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.298
MDA-MB-330	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02761
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052031
HOXA4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.8595
VMRC-LCD	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.863566
NCI-H2170	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.851128
NCI-H748	COSMIC Cell Line Gene Mutation Profiles	1.0	null
FOS_MCF 10A_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
smooth muscle	HPA Tissue Protein Expression Profiles	1.0	1.10246
TK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.939677
SOX14	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.8237
HT1197	CCLE Cell Line Gene CNV Profiles	-1.0	-1.51445
NR3C1	JASPAR Predicted Transcription Factor Targets	1.0	null
POU4F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.4094
MNX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.5388
HOXD10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.6977
GBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.4968
HOXC9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.8137
647V	CCLE Cell Line Gene CNV Profiles	1.0	1.33
Cytoplasmic side of membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.969
GSE247764_0_v_2_nell2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
HSC-3	COSMIC Cell Line Gene CNV Profiles	1.0	4.51153
G111	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12934
LBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.6631
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.039678
A-498	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.33236
HCC1599	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.62564
POU3F4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.6083
NCIH2172	CCLE Cell Line Gene CNV Profiles	1.0	1.79825
Sox5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	23.0887
whole plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.064808
hematopoietic system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058704
Sox6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	31.7149
HCE4	DepMap CRISPR Gene Dependency	1.0	3.63694
FOSL1::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.589
EP300_GM12878_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MDA-MB-415	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.938654
TEAD4	ENCODE Transcription Factor Targets	1.0	null
connective tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053826
NCI-H2172	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.80521
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-3.64309
DDX27	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.76455
SOX12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.6864
HCT116	DepMap CRISPR Gene Dependency	1.0	2.45179
HOXA6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.8309
thought	GeneRIF Biological Term Annotations	1.0	null
PMC12582692-medi-104-e45093-s001.xlsx-Table_S1-Table_S1_Genetic_instruments_of_plasma_proteins_for_MR_analysis_NR3C2	Rummagene Transcription Factor Associations 2026	1.0	null
K-562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.875167
WM115	DepMap CRISPR Gene Dependency	1.0	4.29122
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
PROP1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	88.093
display	GeneRIF Biological Term Annotations	1.0	null
response to stimulus	GO Biological Process Annotations 2015	1.0	null
HCC827	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.851128
ZNF8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	84.5182
ZNF274	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.6081
SK-MES-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.903776
Clonei	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.819
Gingivitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.084
HOXD12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.1522
PANC 02.03	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.33236
PHOX2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	67.7992
Dmrt1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.9569
CL-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.63405
HOXB9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.7817
germ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.834061
496100453_HIP_possible Alzheimer's disease_no TBI_88_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	19.1502
U937	CCLE Cell Line Gene CNV Profiles	1.0	2.14784
SCC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.22996
Lhx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	92.05
Smc5-Smc6 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.851
palatine tonsil	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.55795
KYSE-150	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25473
NFE2L2	ChEA Transcription Factor Targets	1.0	null
HT-115	COSMIC Cell Line Gene Mutation Profiles	1.0	null
MDAMB436	CCLE Cell Line Gene CNV Profiles	-1.0	-1.38544
Epididymal fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.775
Palatine tonsil	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.274
LHX9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.3406
KDM2B-26808549-CHIP-SEQ-SIL-ALL-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
NCI-H1975	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.902959
MONOMAC1	DepMap CRISPR Gene Dependency	1.0	3.03736
SNU-475	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00216
MIXL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.0987
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.12012
647-V	COSMIC Cell Line Gene Mutation Profiles	1.0	null
POLR2A_GM12878_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
COLO 741	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.14954
ERF::HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.2214
KYSE150	CCLE Cell Line Gene CNV Profiles	-1.0	-1.32357
TTC1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.35869
HOXC10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.0431
MKN-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.875167
NCIH650	CCLE Cell Line Gene CNV Profiles	1.0	1.59293
JUN-21703547-K562-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
TC138	DepMap CRISPR Gene Dependency	1.0	6.63092
Cauda epididymis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.267
HLF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.2514
MAFF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.06
Alx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	53.1288
H2AFZ_keratinocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
upper respiratory tract disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.806488
cellular_component	LOCATE Predicted Protein Localization Annotations	1.0	null
POLR2A	ENCODE Transcription Factor Targets	1.0	null
FOXP3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.8006
PAX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.4185
PMC12019518-ao5c02459_si_002.xlsx-Table_S3-Table_S3_Screening_of_genes_that_are_commonly_upregulated_in_cells_on_stiff_substrate_and_down-regulated_by_KD_of_UBE2A_B_AR	Rummagene Transcription Factor Associations 2026	1.0	null
NB7	DepMap CRISPR Gene Dependency	1.0	2.00898
LBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.9097
NFE2L2-22581777-LYMPHOBLASTOID-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
ML1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.45887
organism form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055912
Lhx4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.2139
Hoxa13	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	17.731
CDX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.2384
SUDHL8	CCLE Cell Line Gene CNV Profiles	1.0	1.49796
Head	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
TWIST1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.9854
RH41	CCLE Cell Line Gene CNV Profiles	-1.0	-1.38948
JOPACA1	DepMap CRISPR Gene Dependency	1.0	2.14194
tonsillitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.44913
NCI-H1836	COSMIC Cell Line Gene Mutation Profiles	1.0	null
FOXK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.6146
FOXS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.5749
response to other organism	GO Biological Process Annotations 2015	1.0	null
NCI-H1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.52962
HNF1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.9779
antimicrobial	GeneRIF Biological Term Annotations	1.0	null
CPC-N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.31917
JHUEM3	CCLE Cell Line Gene CNV Profiles	1.0	1.83681
SW1783	CCLE Cell Line Gene CNV Profiles	-1.0	-2.14234
DLX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.2098
ZNF354A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	96.829
Jun	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.0466
SCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0724
TEAD2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.3413
COLO 205	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.29459
C32	COSMIC Cell Line Gene Mutation Profiles	1.0	null
ETV5::HOXA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.654
POU2F1::SOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	55.6802
Brain ventricle	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
HOXC13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.9307
TEAD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.4534
NR4A1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.4058