association	dataset	threshold value	standardized value
HT-29	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.63629
HUG1N	CCLE Cell Line Gene CNV Profiles	1.0	1.59534
BEN	CCLE Cell Line Gene CNV Profiles	-1.0	-1.64998
OUMS27	CCLE Cell Line Gene CNV Profiles	1.0	1.54074
T47D	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.25373
OCI-AML5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.862843
NCI-H2009	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10169
HCC70	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06149
cell part	LOCATE Predicted Protein Localization Annotations	1.0	null
NCI-H1092	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.3135
G61	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.32305
HCC2814	CCLE Cell Line Gene CNV Profiles	-1.0	-1.35564
HCC1419	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.765871
level	GeneRIF Biological Term Annotations	1.0	null
NCI-H292	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.988771
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.58101
HEL	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33295
ACCMESO1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.66026
SNU-449	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.899783
20460173-ImmPortComprehensiveListofImmune-RelatedGenes	GeneSigDB Published Gene Signatures	1.0	null
OVCA 432	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.41787
NCIH2342	CCLE Cell Line Gene CNV Profiles	-1.0	-1.91883
intracellular part	LOCATE Predicted Protein Localization Annotations	1.0	null
PK59	CCLE Cell Line Gene CNV Profiles	1.0	1.62347
SUPM2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.55339
before	GeneRIF Biological Term Annotations	1.0	null
membrane-bounded organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
MCF7	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.11699
cellular_component	LOCATE Predicted Protein Localization Annotations	1.0	null
IM-95M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49384
SNU-475	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.53655
OCUM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.962118
SIHA	CCLE Cell Line Gene CNV Profiles	-1.0	-2.04189
COLO-704	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.14835
CJM	CCLE Cell Line Gene CNV Profiles	1.0	2.07342
mechanisms	GeneRIF Biological Term Annotations	1.0	null
CAL78	CCLE Cell Line Gene CNV Profiles	-1.0	-1.812
SUM225CWN	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.856456
EM2	CCLE Cell Line Gene CNV Profiles	1.0	1.36546
J82	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.03082
KURAMOCHI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.30945
organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
ASPC1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.57056
peripheral	GeneRIF Biological Term Annotations	1.0	null
CAL51	CCLE Cell Line Gene CNV Profiles	1.0	1.37581
therapy	GeneRIF Biological Term Annotations	1.0	null
JHH-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.85431
SW 1116	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.30901
HCC70	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.03082
BT474	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.670962
UKE-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.74347
KMS-12-PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29967
TYK-NU.CP-R	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.962118
HCC4017	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-3.64449
HCC2688	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35826
SW 480	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.21562
SNU620	CCLE Cell Line Gene CNV Profiles	1.0	1.8276
BEN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.98527
leukaemia	GeneRIF Biological Term Annotations	1.0	null
SNU-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.853269
SNU245	CCLE Cell Line Gene CNV Profiles	-1.0	-1.49369
CHAGO-K-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.988771
HOP-92	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.953792
NCI-H2198	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.915686
NCI-H322T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07988
U937	CCLE Cell Line Gene CNV Profiles	1.0	1.37281
SNU61	CCLE Cell Line Gene CNV Profiles	-1.0	-1.339
MDAMB157	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.797185
KMS27	CCLE Cell Line Gene CNV Profiles	1.0	1.6386
JHOC5	CCLE Cell Line Gene CNV Profiles	1.0	1.33739
NCI-H1703	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12954
C32	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.934947
MFM-223	COSMIC Cell Line Gene CNV Profiles	1.0	2.15529
A-Vietnam-1203_CIP048_RG4-2004(H5N1)NS1trunc_3Hour_None_GSE43204	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.39713
HCC70	CCLE Cell Line Gene CNV Profiles	-1.0	-2.23066
H322T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07988
OCI-M2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.31696
HS 940.T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.39858
VMRC-LCD	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09112
used	GeneRIF Biological Term Annotations	1.0	null
MV-4-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01826
SW1417	CCLE Cell Line Gene CNV Profiles	-1.0	-1.3224
SPI1	ENCODE Transcription Factor Targets	1.0	null
ME-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.987004
MOLM6	CCLE Cell Line Gene CNV Profiles	1.0	2.6682
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.54982
NCI-H929	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.986022
JHOS4	CCLE Cell Line Gene CNV Profiles	-1.0	-1.68126
MORCPR	CCLE Cell Line Gene CNV Profiles	-1.0	-1.73712
hbd2	GeneRIF Biological Term Annotations	1.0	null
KYM1	CCLE Cell Line Gene CNV Profiles	1.0	1.65312
DOHH2	CCLE Cell Line Gene CNV Profiles	1.0	1.53626
OPM-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.854241
NCI-H820	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.53655
MDAMB231	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.701087
NCI-H1155	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49384
OCI-AML3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49384
OCIAML5	CCLE Cell Line Gene CNV Profiles	1.0	1.33791
NCI-H345	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.32951
chronic	GeneRIF Biological Term Annotations	1.0	null
HCC12	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49384
NCI-H1355	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.20911
JHOS-4	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.03082
mitochondrion	LOCATE Predicted Protein Localization Annotations	1.0	null
OCI-AML2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.925194
MKN-74	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02719
SNU349	CCLE Cell Line Gene CNV Profiles	1.0	2.59551
1321N1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.4053
ECC10	CCLE Cell Line Gene CNV Profiles	1.0	1.98594
SU-DHL-6	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.934386
PL21	CCLE Cell Line Gene CNV Profiles	1.0	1.35458
defa4	GeneRIF Biological Term Annotations	1.0	null
SUM1315MO2	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.36491
intracellular organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
different	GeneRIF Biological Term Annotations	1.0	null
SW 1417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.52631
initiation	GeneRIF Biological Term Annotations	1.0	null
CX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.63629
being	GeneRIF Biological Term Annotations	1.0	null
KCL22	CCLE Cell Line Gene CNV Profiles	1.0	1.68382
myeloid	GeneRIF Biological Term Annotations	1.0	null
NCI-H2804	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.915686
NCI-H1781	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.17752
KARPAS-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24283
DB	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04608
THP-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49384
CPC-N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.969687
CW2	CCLE Cell Line Gene CNV Profiles	1.0	1.67977
TOV-112D	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.899783
NCI-H889	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.66998
GI1	CCLE Cell Line Gene CNV Profiles	1.0	1.47822
intracellular membrane-bounded organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
beta	GeneRIF Biological Term Annotations	1.0	null
BICR 31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.857372
imatinibresistant	GeneRIF Biological Term Annotations	1.0	null
PATU8988S	CCLE Cell Line Gene CNV Profiles	-1.0	-2.48968
L-363	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.03082
hnp1	GeneRIF Biological Term Annotations	1.0	null
OV-90	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.880955
SK-MM-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.89912
HS 852.T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.86916
KYSE-70	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35826
HCC515	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.46388
BICR 22	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.89912
BXPC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.837512
RT4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16783
NCI-H146	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.3135
IM-95	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.73898
defa13	GeneRIF Biological Term Annotations	1.0	null
ASPC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.899783
JHH4	CCLE Cell Line Gene CNV Profiles	-1.0	-1.75179
risk	GeneRIF Biological Term Annotations	1.0	null
POLR2A	ENCODE Transcription Factor Targets	1.0	null
HCC366	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20186
G111	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.56969
MDA-MB-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.32951
SNU475	CCLE Cell Line Gene CNV Profiles	-1.0	-1.46351
rtd1	GeneRIF Biological Term Annotations	1.0	null
HCC2935	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.950974
EFM-19	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35826
SU-DHL-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.39858
G140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.837512
DV-90	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49384
CAL 54	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.899783
theta	GeneRIF Biological Term Annotations	1.0	null
MIAPACA2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.91527
HCC1171	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06149
BT-549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.915686
LOX-IMVI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0452
HT29	CCLE Cell Line Gene CNV Profiles	-1.0	-1.45304
ACHN	CCLE Cell Line Gene CNV Profiles	-1.0	-3.05059
HCC2279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.15349
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0452
HCC202	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.46388
POLR2A_MCF-7_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KYSE-450	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12402
RT-112	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.951329
alpha	GeneRIF Biological Term Annotations	1.0	null
NCI-H209	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49384
HPBALL	CCLE Cell Line Gene CNV Profiles	1.0	1.59833
WSU-DLCL2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49384
BT-20	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20225
NCI-H522	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08608
OVCAR8	CCLE Cell Line Gene CNV Profiles	-1.0	-2.36558
HCC1937	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.989035
MCAS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.98527
BT20	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.884763
HCC3153	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.861982
HCC1493	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09202
MCAS	CCLE Cell Line Gene CNV Profiles	-1.0	-1.39877
SNU-216	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.950974
CAL-85-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25415
MT-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.969988
PC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.52581
cytoplasmic part	LOCATE Predicted Protein Localization Annotations	1.0	null
SPI1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
U266B1	CCLE Cell Line Gene CNV Profiles	1.0	2.1735
A4FUK	CCLE Cell Line Gene CNV Profiles	1.0	1.42327
action	GeneRIF Biological Term Annotations	1.0	null
identify	GeneRIF Biological Term Annotations	1.0	null
18451145-TableS1	GeneSigDB Published Gene Signatures	1.0	null
HCC1171	CCLE Cell Line Gene CNV Profiles	-1.0	-1.4157
RCC10RGB	CCLE Cell Line Gene CNV Profiles	1.0	1.93326
SNU201	CCLE Cell Line Gene CNV Profiles	1.0	2.1105
blood	GeneRIF Biological Term Annotations	1.0	null
MCF10F	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.962183
KU812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.32305
who	GeneRIF Biological Term Annotations	1.0	null
NCIH196	CCLE Cell Line Gene CNV Profiles	-1.0	-1.76449
KMS21BM	CCLE Cell Line Gene CNV Profiles	1.0	1.94405
SUM149PT	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.08835
RERF-LC-KJ	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.41787
antihiv1	GeneRIF Biological Term Annotations	1.0	null