association	dataset	threshold value	standardized value
intracellular membrane-bounded organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
artery	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.06781
regulation of cellular macromolecule biosynthetic process	GO Biological Process Annotations 2015	1.0	null
cell junction	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.107543
CTCF	ENCODE Transcription Factor Targets	1.0	null
nucleus	LOCATE Predicted Protein Localization Annotations	1.0	null
C32TG	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.27947
FOSL2	ENCODE Transcription Factor Targets	1.0	null
GTL-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12183
cranium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.175365
aromatic compound biosynthetic process	GO Biological Process Annotations 2015	1.0	null
basophil	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.312595
atherosclerotic plaque	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.247399
NCI-H522	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08494
pancreatic islet	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.139697
rna metabolic process	GO Biological Process Annotations 2015	1.0	null
SIN3A_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RXRA_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RH30	CCLE Cell Line Gene CNV Profiles	-1.0	-2.24761
HCC1493	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.61404
BATF_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SK-MEL-5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.874306
rna biosynthetic process	GO Biological Process Annotations 2015	1.0	null
regulation of cellular process	GO Biological Process Annotations 2015	1.0	null
tunica intima vasorum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.186632
COLO 741	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.831108
diffuse large b-cell lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.541605
vascular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058001
EBF1_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KLF5	JASPAR Predicted Transcription Factor Targets	1.0	null
HCC70	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0062
UT7	CCLE Cell Line Gene CNV Profiles	1.0	1.48536
ZBTB33_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SPI1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EBF1_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
regulation of rna metabolic process	GO Biological Process Annotations 2015	1.0	null
nitrogen compound metabolic process	GO Biological Process Annotations 2015	1.0	null
HUP-T3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03731
cellular_component	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.040912
PAX5_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
COV413A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.963569
musculoskeletal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.047378
HCC1897	CCLE Cell Line Gene CNV Profiles	1.0	2.53237
IRF4_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
embryo	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.462239
OVCAR8	CCLE Cell Line Gene CNV Profiles	-1.0	-1.46084
PEER	CCLE Cell Line Gene CNV Profiles	1.0	1.43638
FOXA2_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
regulation of biological process	GO Biological Process Annotations 2015	1.0	null
FOXP2_PFSK-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TCF12	ENCODE Transcription Factor Targets	1.0	null
myotube	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.257572
OE19	CCLE Cell Line Gene CNV Profiles	-1.0	-1.70329
myoblast cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.253578
monocytic leukemia cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.155163
SP1_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
blood cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.066389
muscular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.243918
bone marrow cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.06018
leukemia cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056354
GATA2	JASPAR Predicted Transcription Factor Targets	1.0	null
OVISE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.896726
NCIH854	CCLE Cell Line Gene CNV Profiles	-1.0	-1.72185
artery wall	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.178538
cellular_component	GO Cellular Component Annotations 2015	1.0	null
intracellular membrane-bounded organelle	GO Cellular Component Annotations 2015	1.0	null
MDA-MB-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.869194
non-hodgkin lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.135242
PECAPJ34CLONEC12	CCLE Cell Line Gene CNV Profiles	-1.0	-2.42679
retina	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.076594
OAW28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.845866
TP53	JASPAR Predicted Transcription Factor Targets	1.0	null
acute lymphoblastic leukemia cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.244545
macromolecule metabolic process	GO Biological Process Annotations 2015	1.0	null
molecular_function	GO Molecular Function Annotations 2015	1.0	null
germ layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.617393
PL45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19189
intracellular membrane-bounded organelle	GO Cellular Component Annotations 2023	1.0	null
EFM-192A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.53256
tendon	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.516497
SPI1_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
FOXA2	ENCODE Transcription Factor Targets	1.0	null
cellular aromatic compound metabolic process	GO Biological Process Annotations 2015	1.0	null
OV56	CCLE Cell Line Gene CNV Profiles	1.0	1.64217
regulation of nucleic acid-templated transcription	GO Biological Process Annotations 2015	1.0	null
intracellular organelle	GO Cellular Component Annotations 2015	1.0	null
DANG	CCLE Cell Line Gene CNV Profiles	-1.0	-2.41841
eye	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058911
embryonic structure	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.397979
vertebrate muscular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054765
HCC2885	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.4941
regulation of metabolic process	GO Biological Process Annotations 2015	1.0	null
nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.040769
lymphocytic leukemia cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.0742
KYSE140	CCLE Cell Line Gene CNV Profiles	-1.0	-1.57168
HCC1419	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.874306
biosynthetic process	GO Biological Process Annotations 2015	1.0	null
cellular biosynthetic process	GO Biological Process Annotations 2015	1.0	null
heterocycle biosynthetic process	GO Biological Process Annotations 2015	1.0	null
CTCF_GM10248_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cartilage	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.535042
BATF	ENCODE Transcription Factor Targets	1.0	null
granulocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.187665
muscle tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.068543
GABPA	ENCODE Transcription Factor Targets	1.0	null
leukocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.075766
cellular nitrogen compound biosynthetic process	GO Biological Process Annotations 2015	1.0	null
heterocycle metabolic process	GO Biological Process Annotations 2015	1.0	null
SPI1_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hematopoietic system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.063708
cellular_component	LOCATE Predicted Protein Localization Annotations	1.0	null
SW 837	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.874306
NCI-H1651	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.896726
HINFP	JASPAR Predicted Transcription Factor Targets	1.0	null
organelle	GO Cellular Component Annotations 2015	1.0	null
regulation of gene expression	GO Biological Process Annotations 2015	1.0	null
mandible	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.484766
cardiovascular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056819
TCF3	ENCODE Transcription Factor Targets	1.0	null
SNU-475	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.98423
pancreas	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.072697
POU2F2_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
organic cyclic compound biosynthetic process	GO Biological Process Annotations 2015	1.0	null
EP300_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
endocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051765
cellular process	GO Biological Process Annotations 2015	1.0	null
cell-substrate junction	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.172735
craniofacial region	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.168177
JUND	ENCODE Transcription Factor Targets	1.0	null
KYSE520	CCLE Cell Line Gene CNV Profiles	1.0	1.48843
SNU1196	CCLE Cell Line Gene CNV Profiles	1.0	1.78817
SCC-25	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.85264
primary metabolic process	GO Biological Process Annotations 2015	1.0	null
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12183
TAF1_GM12892_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
lymphoid tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051989
KHM-1B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32621
HCC1263	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35512
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.347038
RXRA_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mesoderm	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.681064
COR-L88	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.43269
intracellular part	LOCATE Predicted Protein Localization Annotations	1.0	null
OCIMY5	CCLE Cell Line Gene CNV Profiles	1.0	2.01133
NCI-H146	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.896726
nucleobase-containing compound biosynthetic process	GO Biological Process Annotations 2015	1.0	null
FADU	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.961916
PE01	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-3.64461
SP1_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
endocrine pancreas	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.135554
JEKO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.25015
NCI-H820	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.83829
neointima	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.363766
regulation of transcription, dna-templated	GO Biological Process Annotations 2015	1.0	null
MAX	JASPAR Predicted Transcription Factor Targets	1.0	null
SNU-668	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.93523
SPI1	ENCODE Transcription Factor Targets	1.0	null
muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.383637
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.041092
TCF12_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SK-N-AS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.37249
organic cyclic compound binding	GO Molecular Function Annotations 2015	1.0	null
JUND_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RERF-LC-OK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.896726
MEC1	CCLE Cell Line Gene CNV Profiles	1.0	2.14572
UM-UC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.874306
SK-BR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.903678
DMS 454	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.831108
SIN3A_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
b-cell lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.305948
SCC-9	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20358
inner ear	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.250953
E2F1	JASPAR Predicted Transcription Factor Targets	1.0	null
blood vessel	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059651
KMS-34	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19189
viscus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05158
TCF12_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cell part	GO Cellular Component Annotations 2015	1.0	null
regulation of rna biosynthetic process	GO Biological Process Annotations 2015	1.0	null
NCI-H28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.4941
NCI-H2196	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.59632
head	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054179
physical disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.18621
IRF4	ENCODE Transcription Factor Targets	1.0	null
NCI-H2595	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.27947
SNU738	CCLE Cell Line Gene CNV Profiles	-1.0	-1.39773
cleft palate	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.652484
KYSE-150	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.27824
CTCF_spleen_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
OUMS23	CCLE Cell Line Gene CNV Profiles	-1.0	-1.7849
PK-59	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.68231
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.340388
NCIH838	CCLE Cell Line Gene CNV Profiles	-1.0	-1.61178
NCI-H520	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01992
KLE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.869194
NCIH2081	CCLE Cell Line Gene CNV Profiles	1.0	1.35067
thp-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.33744
CBX3_K562_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
intracellular part	GO Cellular Component Annotations 2015	1.0	null
nucleus	GO Cellular Component Annotations 2015	1.0	null
organism form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.421529
hematopoietic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.066982
atrophic muscular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.344941
NCI-H187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05163
NCI-N87	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.963569
RMG-I	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.92334
POLR2A	ENCODE Transcription Factor Targets	1.0	null
transcription, dna-templated	GO Biological Process Annotations 2015	1.0	null
cell part	LOCATE Predicted Protein Localization Annotations	1.0	null
PK59	CCLE Cell Line Gene CNV Profiles	-1.0	-1.43827
myoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.225144
JUND_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SF539	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.845866
organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
TE1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.97564
neuropathy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.050647
SCC25	CCLE Cell Line Gene CNV Profiles	-1.0	-1.42207
PAX5_GM12878_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05163
somite	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.03302
FOSL2_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
digestive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057532
transcription regulatory region nucleic acid binding	GO Molecular Function Annotations 2023	1.0	null
EP300	ENCODE Transcription Factor Targets	1.0	null
muscular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.067036
LN-18	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10025
disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.040447
pancreatic beta cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.781063
intracellular organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
myopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.069355
GABPA_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
LP-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.963569
OCI-M1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.44318
HLF	CCLE Cell Line Gene CNV Profiles	1.0	1.5112
heterocyclic compound binding	GO Molecular Function Annotations 2015	1.0	null
NCI-H2803	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11554
EP300_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
JUND_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
regulation of cellular biosynthetic process	GO Biological Process Annotations 2015	1.0	null
ZBTB33_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cellular nitrogen compound metabolic process	GO Biological Process Annotations 2015	1.0	null
TCF12_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
neural crest	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.670471
SUM 149PT	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09898
SP1	JASPAR Predicted Transcription Factor Targets	1.0	null
c2c12 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.323144
REST_GM12878_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
regulation of cellular metabolic process	GO Biological Process Annotations 2015	1.0	null
bud	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.366381
HEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.933839
G122	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.962963
cleft lip	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.72612
NCI-H920	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.92188
ZBTB33	ENCODE Transcription Factor Targets	1.0	null
immune system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.067626
SKNAS	CCLE Cell Line Gene CNV Profiles	1.0	1.70906
TFAP2A	JASPAR Predicted Transcription Factor Targets	1.0	null
PAX5_GM12878_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
branchial arch	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.624658
lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.122626
lymphoblastic leukemia cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.243294
muscle tendon junction	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.998086
gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051252
NCI-H2081	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12183
REST_Panc1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MOLP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.53404
DAN-G	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.896726
SW579	CCLE Cell Line Gene CNV Profiles	1.0	1.48005
disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.04108
SARS-CoV_0Hour_23935999_GSE47962	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.3132
organic substance metabolic process	GO Biological Process Annotations 2015	1.0	null
HOP-62	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.844829
G121	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.51294
metabolic process	GO Biological Process Annotations 2015	1.0	null
sense organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059492
BFTC-905	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.93523
USF1_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
biological_process	GO Biological Process Annotations 2015	1.0	null
alitretinoin_homo sapiens_gpl6480_gse43090	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
SKNFI	CCLE Cell Line Gene CNV Profiles	-1.0	-1.50561
PANC 04.03	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01992
G292CLONEA141B1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36398
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.345558
neural plate	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.173048
SPI1_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
plasma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.220604
PAX5_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TCF3_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
membrane-bounded organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
ELK4	JASPAR Predicted Transcription Factor Targets	1.0	null
SIX5	ENCODE Transcription Factor Targets	1.0	null
TCF3_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
OVKATE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.38096
NCI-H1299	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.831108
SIX5_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HT-144	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.869194
regulation of transcription by RNA polymerase II	GO Biological Process Annotations 2023	1.0	null
NCIH23	CCLE Cell Line Gene CNV Profiles	-1.0	-1.59333
POU2F2_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
786O	CCLE Cell Line Gene CNV Profiles	-1.0	-3.00711
FOXP2	ENCODE Transcription Factor Targets	1.0	null
burkitt lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.583163
NCIH1355	CCLE Cell Line Gene CNV Profiles	1.0	1.36625
facioscapulohumeral muscular dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.0606
USF1	ENCODE Transcription Factor Targets	1.0	null
A101D	CCLE Cell Line Gene CNV Profiles	1.0	1.36458
mesenchyme	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.351856
CAPAN-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.34622
SW 948	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.896726
sequence-specific double-stranded DNA binding	GO Molecular Function Annotations 2023	1.0	null
BCL11A	ENCODE Transcription Factor Targets	1.0	null
BATF_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H1666	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.53256
OVCAR-5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20041
orofacial cleft	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.586665
BCL11A_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
COV362	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11554
jaw	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.374618
KU812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10025
SCC-25	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.83684
cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.041733
OCI-LY-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.19171
lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054859
b-lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.067944
IRF4_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SARS-dORF6_24Hour_23935999_GSE47962	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.04396
SUM 229PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32621
binding	GO Molecular Function Annotations 2015	1.0	null
CTCF_LNCaP clone FGC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KYSE-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.34622
bone marrow	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059804
nucleus	GO Cellular Component Annotations 2023	1.0	null
TAF1	ENCODE Transcription Factor Targets	1.0	null
regulation of macromolecule metabolic process	GO Biological Process Annotations 2015	1.0	null
POU2F2	ENCODE Transcription Factor Targets	1.0	null
PA-TU-8902	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.4941
KMS-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.42905
ear	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.071308
biological regulation	GO Biological Process Annotations 2015	1.0	null
786-O	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.68092
HCC1954	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.903678
BT-20	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.17867
HCC1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32621
monocytic leukemia cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.03522
NCIH2141	CCLE Cell Line Gene CNV Profiles	1.0	1.44239
TAF1_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TM31	CCLE Cell Line Gene CNV Profiles	1.0	2.34027
PATU8988S	CCLE Cell Line Gene CNV Profiles	1.0	1.70518
HUPT3	CCLE Cell Line Gene CNV Profiles	1.0	1.48966
RXRA	ENCODE Transcription Factor Targets	1.0	null
macromolecule biosynthetic process	GO Biological Process Annotations 2015	1.0	null
POU2F2_GM12878_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2098
SP1	ENCODE Transcription Factor Targets	1.0	null
HCC630	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02907
nucleic acid-templated transcription	GO Biological Process Annotations 2015	1.0	null
ZBTB33_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HEP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35512
leukemia cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.078064
adherens junction	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.134514
hematopoietic cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055262
105KC	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.10516
regulation of nitrogen compound metabolic process	GO Biological Process Annotations 2015	1.0	null
PBX3_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EBF1	ENCODE Transcription Factor Targets	1.0	null
cellular metabolic process	GO Biological Process Annotations 2015	1.0	null
regulation of biosynthetic process	GO Biological Process Annotations 2015	1.0	null
OPM-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2705
RPMI7951	CCLE Cell Line Gene CNV Profiles	1.0	2.03077
USF1_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
bone	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062259
SNU1214	CCLE Cell Line Gene CNV Profiles	1.0	2.01265
GABPA_HeLa-S3_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PBX3	ENCODE Transcription Factor Targets	1.0	null
dna binding	GO Molecular Function Annotations 2015	1.0	null
organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042075
HS766T	CCLE Cell Line Gene CNV Profiles	-1.0	-1.94325
SP1_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC1428	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.59632
TAF1_HeLa-S3_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
limb bud	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.511384
NCI-H1648	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.70389
organic cyclic compound metabolic process	GO Biological Process Annotations 2015	1.0	null
BT-549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35512
HH	CCLE Cell Line Gene CNV Profiles	-1.0	-1.53552
SPI1_GM12878_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
transcription cis-regulatory region binding	GO Molecular Function Annotations 2023	1.0	null
G111	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05273
gonadotrophic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.511384
REST	ENCODE Transcription Factor Targets	1.0	null
blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.065692
NCI-H596	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.961916
nucleic acid metabolic process	GO Biological Process Annotations 2015	1.0	null
647V	CCLE Cell Line Gene CNV Profiles	-1.0	-1.7703
regulation of DNA-templated transcription	GO Biological Process Annotations 2023	1.0	null
ZBTB33_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PLC/PRF/5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07164
neuromuscular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.249608
organic substance biosynthetic process	GO Biological Process Annotations 2015	1.0	null
POLR2A_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BRD4_01_119	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	1.225
PBX3_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SIX5_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SIX5_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CBX3	ENCODE Transcription Factor Targets	1.0	null
skeletal system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.33413
SJCRH30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.36233
ZBTB33_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
regulation of nucleobase-containing compound metabolic process	GO Biological Process Annotations 2015	1.0	null
nucleic acid binding	GO Molecular Function Annotations 2015	1.0	null
cellular macromolecule biosynthetic process	GO Biological Process Annotations 2015	1.0	null
HCC1599	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.83684
HMCB	CCLE Cell Line Gene CNV Profiles	1.0	1.33078
KMS-26	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03731
anchoring junction	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.13079
hematologic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.075482
L1236	CCLE Cell Line Gene CNV Profiles	1.0	1.65096
HEC1B	CCLE Cell Line Gene CNV Profiles	-1.0	-1.67621
P12ICHIKAWA	CCLE Cell Line Gene CNV Profiles	1.0	3.2803
PAX5	ENCODE Transcription Factor Targets	1.0	null
lymphoid cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052853
HCC1599	CCLE Cell Line Gene CNV Profiles	-1.0	-2.02599
ectoderm	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.096558
regulation of macromolecule biosynthetic process	GO Biological Process Annotations 2015	1.0	null
nucleobase-containing compound metabolic process	GO Biological Process Annotations 2015	1.0	null
ZBTB33_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MKN-74	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.97345
FOSL2_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
pancreatic beta cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.185821
HCoV-EMC2012_3Hour_23631916_GSE45042	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.52254
ganglion cell layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.344818
cellular macromolecule metabolic process	GO Biological Process Annotations 2015	1.0	null
NCIH2066	CCLE Cell Line Gene CNV Profiles	-1.0	-1.57111
muscular dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.344941
POLR2A_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BCL11A_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
LU65	CCLE Cell Line Gene CNV Profiles	-1.0	-1.43313
NCI-H2135	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.64725
connective tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.06262
regulation of primary metabolic process	GO Biological Process Annotations 2015	1.0	null
mature b-cell neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.466172
cell-substrate adherens junction	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.180339
membrane-bounded organelle	GO Cellular Component Annotations 2015	1.0	null
SNU-601	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.4941
KYSE180	CCLE Cell Line Gene CNV Profiles	1.0	1.83955
NCIH1838	CCLE Cell Line Gene CNV Profiles	1.0	1.67988
SIN3A	ENCODE Transcription Factor Targets	1.0	null