association	dataset	threshold value	standardized value
SPI1	ENCODE Transcription Factor Targets	1.0	null
SIX5_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
USF1_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
chromosomal part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.859392
rhabdomyosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.767576
NCI-H1666	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.53256
nuclear part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
SPI1_GM12878_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
germ cell cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.547724
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.950393
transcription regulatory region nucleic acid binding	GO Molecular Function Annotations 2023	1.0	null
intracellular part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
facioscapulohumeral muscular dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	2.8959
disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.319726
BCL11A_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2098
nucleus	GO Cellular Component Annotations 2023	1.0	null
TCF12_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.16342
skeletal muscle cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.277197
myoepithelioma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.498467
SNU-601	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.4941
satellite cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.222224
intracellular part	LOCATE Predicted Protein Localization Annotations	1.0	null
JUND	ENCODE Transcription Factor Targets	1.0	null
intracellular membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
COR-L88	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.43269
NCI-H187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05163
RERF-LC-OK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.896726
embryonic cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059259
HINFP	JASPAR Predicted Transcription Factor Targets	1.0	null
JUND_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
limb	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.223906
POU2F2_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KU812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10025
SW 837	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.874306
adult	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.337072
cervical cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.259591
KMS-26	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03731
cytoskeletal part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.043876
intracellular non-membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.644429
SP1	JASPAR Predicted Transcription Factor Targets	1.0	null
flexor	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.15308
ZBTB33_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KLF5	JASPAR Predicted Transcription Factor Targets	1.0	null
organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
y chromosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.219969
USF1	ENCODE Transcription Factor Targets	1.0	null
quadriceps	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.694128
nucleoplasm	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
cellular_component	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
SF539	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.845866
embryo	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.1111
TFAP2A	JASPAR Predicted Transcription Factor Targets	1.0	null
vascular bundle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.149424
conventional central osteosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.659215
cell part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.4676
NCI-H1648	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.70389
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.956428
SIX5_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
membrane-enclosed lumen	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
gonad	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.398357
membrane-bounded organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
NCI-N87	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.963569
OAW28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.845866
intracellular organelle lumen	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.067806
PBX3_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
FOXA2	ENCODE Transcription Factor Targets	1.0	null
SK-MEL-5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.874306
HEP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35512
plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055717
SCC-25	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.85264
nuclear envelope	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
JUND_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KHM-1B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32621
SK-BR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.903678
embryonic fibroblast cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.080543
integumentary system benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.07988
male reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.073262
embryonic structure	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.08148
skeletal muscle cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.21673
vastus lateralis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.230656
HCC70	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0062
OCI-M1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.44318
extensor	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.584823
RXRA	ENCODE Transcription Factor Targets	1.0	null
COLO 741	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.831108
ZBTB33	ENCODE Transcription Factor Targets	1.0	null
biceps	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.465723
hematologic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.043355
PL45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19189
G122	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.962963
transcription cis-regulatory region binding	GO Molecular Function Annotations 2023	1.0	null
organelle lumen	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
BATF	ENCODE Transcription Factor Targets	1.0	null
musculoskeletal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.26473
intracellular	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.484079
skin benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.080903
C32TG	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.27947
skeletal muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.15717
EP300	ENCODE Transcription Factor Targets	1.0	null
embryonic fibroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.079066
NCI-H2595	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.27947
fibroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.278603
EP300_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052414
FADU	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.961916
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12183
protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.040342
sarcoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.693719
GABPA	ENCODE Transcription Factor Targets	1.0	null
nucleus	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.252202
POU2F2	ENCODE Transcription Factor Targets	1.0	null
KYSE-150	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.27824
male reproductive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.247079
nuclear lumen	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
organelle part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
connective tissue cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.086414
cell part	LOCATE Predicted Protein Localization Annotations	1.0	null
mature b-cell neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.101901
cell part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
plasmacytoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.158097
intracellular organelle part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
plant vessel	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.946947
myoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.76977
SNU-668	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.93523
SPI1_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H2081	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12183
musculoskeletal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.357446
OVISE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.896726
bone cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.250627
SNU-475	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.98423
cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.22145
SIN3A	ENCODE Transcription Factor Targets	1.0	null
embryoid body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.553286
nervous system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.442418
urogenital system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059436
vascular tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.141561
juvenile	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.412011
HOP-62	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.844829
TK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05163
muscular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.66555
PAX5_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H2135	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.64725
histiocytosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.094156
HCC1954	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.903678
PANC 04.03	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01992
leg	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.242054
cell	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.4676
HCC2885	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.4941
membrane-enclosed lumen	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.056411
rhabdomyosarcoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.853788
OPM-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2705
cellular_component	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.440124
REST_SK-N-SH_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ZBTB33_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
organelle membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
myosin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.074972
regulation of DNA-templated transcription	GO Biological Process Annotations 2023	1.0	null
PAX5	ENCODE Transcription Factor Targets	1.0	null
c2c12 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.931051
HCC1428	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.59632
MDA-MB-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.869194
thigh	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.568823
UM-UC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.874306
endocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053309
connective tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.081103
leg muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.544152
sex chromosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.1074
TAF1	ENCODE Transcription Factor Targets	1.0	null
seed	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.068187
organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.160021
BT-20	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.17867
langerhans-cell histiocytosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.262306
non-membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.644429
intracellular organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.544823
bone osteosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.592116
intracellular membrane-bounded organelle	GO Cellular Component Annotations 2023	1.0	null
plasma cell neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.117848
NCI-H1299	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.831108
HCC630	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02907
epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.050492
MOLP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.53404
HCC1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32621
GABPA_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
neuromuscular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.82549
BT-549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35512
HUP-T3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03731
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.817976
NCI-H28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.4941
SP1	ENCODE Transcription Factor Targets	1.0	null
G121	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.51294
GATA2	JASPAR Predicted Transcription Factor Targets	1.0	null
NCI-H596	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.961916
HEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.933839
muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.38505
HT-144	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.869194
PA-TU-8902	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.4941
intracellular membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.163641
TP53	ChEA Transcription Factor Targets	1.0	null
nuclear lumen	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.190814
membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
TCF3	ENCODE Transcription Factor Targets	1.0	null
cell property	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.225144
cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.300173
intracellular organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
stem	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.081784
PE01	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-3.64461
organ system benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.045352
organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.538649
DMS 454	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.831108
COV413A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.963569
786-O	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.68092
nucleus	LOCATE Predicted Protein Localization Annotations	1.0	null
NCI-H146	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.896726
whole plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055741
uterus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.066292
intracellular membrane-bounded organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
BCL11A	ENCODE Transcription Factor Targets	1.0	null
myoblast cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.847065
SIX5	ENCODE Transcription Factor Targets	1.0	null
uterine cervix	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.091108
intracellular organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
b-cell lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.069784
muscle tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.66645
sarcoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.277549
nucleus	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
POLR2AphosphoS5_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SJCRH30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.36233
PLC/PRF/5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07164
FOSL2	ENCODE Transcription Factor Targets	1.0	null
cervical cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.255234
POLR2A_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
muscular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.32958
ELK4	JASPAR Predicted Transcription Factor Targets	1.0	null
internal male genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.239007
DAN-G	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.896726
POU2F2_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC1493	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.61404
plant form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.066094
regulation of transcription by RNA polymerase II	GO Biological Process Annotations 2023	1.0	null
myopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.66735
HCC1263	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35512
organelle lumen	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.060698
hindlimb	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.318042
sequence-specific double-stranded DNA binding	GO Molecular Function Annotations 2023	1.0	null
KYSE-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.34622
NCI-H2196	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.59632
CAPAN-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.34622
peripheral nervous system neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.610838
lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.052064
nih-3t3 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.232881
RXRA_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BFTC-905	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.93523
POU2F2_GM12878_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KMS-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.42905
TP53-22573176-HFKS-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
SIN3A_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC1419	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.874306
non-hodgkin lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.059656
skeletal system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.815233
female reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057846
disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.813052
intracellular organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.624355
TCF12_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
LN-18	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10025
chromatin	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.894406
EFM-192A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.53256
E2F1	JASPAR Predicted Transcription Factor Targets	1.0	null
NCI-H2803	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11554
POLR2A	ENCODE Transcription Factor Targets	1.0	null
TCF12_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
shoot	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.065138
embryonal rhabdomyosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.354131
SK-N-AS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.37249
female reproductive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057303
TCF12	ENCODE Transcription Factor Targets	1.0	null
unconventional myosin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.183328
TP53	JASPAR Predicted Transcription Factor Targets	1.0	null
testis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.424963
FOXA2_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BCL11A_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.043576
organelle envelope	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
SP1_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
nuclear part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.180634
heterochromatin	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.452029
peripheral primitive neuroectodermal tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.1541
PAX5_GM12878_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BATF_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
internal female genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055375
TCF3_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
JEKO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.25015
muscle cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.670732
PAX5_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SPI1_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
intracellular part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.511233
PBX3	ENCODE Transcription Factor Targets	1.0	null
SW 948	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.896726
muscle fibre	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.16826
nuclear membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
fibroblast cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05958
FOSL2_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MAX	JASPAR Predicted Transcription Factor Targets	1.0	null
ZBTB33_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MKN-74	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.97345
reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062757
osteosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.137768
small cell osteogenic sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.88516
KMS-34	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19189
GTL-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12183
NCI-H1651	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.896726
OCI-LY-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.19171
SPI1_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
bone	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.107169
integument	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.050278
intracellular organelle lumen	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
NCI-H520	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01992
myotube	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.52856
plant embryo	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.071753
TAF1_GM12892_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
myoepithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.224893
PK-59	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.68231
KLE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.869194
te-671 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.12704
REST	ENCODE Transcription Factor Targets	1.0	null
EP300_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
vertebrate muscular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.924623
immune system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.040977
PAX5_GM12878_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
COV362	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11554
skeletal muscle cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.752492
SCC-25	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.83684
immune system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042395
forelimb	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.282837
organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.621379
germ cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.120448
REST_Panc1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
OVCAR-5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20041
HCC1599	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.83684
sweat gland neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.340173
RMG-I	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.92334
leaf	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.075247
envelope	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
OVKATE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.38096
muscular dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.94736
105KC	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.10516
organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
G111	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05273
chromosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.834597
hamstring muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.340019
plumule	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.074091
cellular_component	LOCATE Predicted Protein Localization Annotations	1.0	null
nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.11687
seedling	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.071753
neuropathy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.6516
LP-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.963569
hypocotyl	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.073375
macromolecular complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.042176
GABPA_HeLa-S3_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H820	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.83829
endomembrane system	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
cervical carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.084843
cell	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
NCI-H920	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.92188
lymphatic system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.056257
GABPA_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H522	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08494
SUM 149PT	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09898
membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
SUM 229PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32621
TAF1_GM12892_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
organism form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.08722
sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.749237
rhabdomyosarcoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.14254
nucleolus	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.32195
SP1_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
gametocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.118536
SCC-9	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20358
thigh muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.742564
bone cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.121498
cartilage	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.146633
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.957722
intracellular	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
TCF3_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
atrophic muscular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.94736