association	dataset	threshold value	standardized value
posterior (caudal) superior temporal cortex (area 22c)_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.95817
PMC6280631__F2	PFOCR Pathway Figure Associations 2024	1.0	null
GSE188570,GSE188571_5_v_0_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
orbital frontal cortex_10 mos_M_12977	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.982125
GTEX-O5YT-1026-SM-3MJGF	GTEx Tissue Sample Gene Expression Profiles	1.0	0.901556
r2 part of median raphe nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-3.30009
H2AFZ_fibroblast of lung_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
AA-98-PM63_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.461056
Hmx2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	33.086
NCI-H727	COSMIC Cell Line Gene Mutation Profiles	1.0	null
H3K4me1_endothelial cell of umbilical vein_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Pancreatic adenocarcinoma_PAAD_TCGA-HZ-7920-01A-11R-2204-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MRFAP1L1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.18813
bonemarrow_6c	HPA Tissue Sample Gene Expression Profiles	-1.0	-0.93142
witkop	GeneRIF Biological Term Annotations	1.0	null
GTEX-P4PP-1626-SM-2HMJF	GTEx Tissue Sample Gene Expression Profiles	1.0	1.16817
PRM2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.68585
NCIH510	CCLE Cell Line Gene CNV Profiles	1.0	1.78743
Organ system benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.223
Brain Lower Grade Glioma_LGG_TCGA-DU-5852-01A-11R-1708-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
proteinaceous extracellular matrix	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
e2f1_21245101_mmtv-myc_lof_mouse_gpl8321_gds4094	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	-1.0	-0.323812
enam	GeneRIF Biological Term Annotations	1.0	null
periventricular stratum of r10BM	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.4567
salivary gland	HPA Tissue Protein Expression Profiles	1.0	1.3651
X-linked amelogenesis imperfecta hypoplastic/hypomaturation 2	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.077
estradiol_homo sapiens_gpl570_gds3283	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
superficial stratum of IC	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.18823
hsa-miR-548l	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
pyramidal layer of taenia tecta	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.00224
superficial stratum of r5Co	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.12255
primary auditory cortex (core)_4 mos_M_12296	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.32073
Colorectum	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
Dense body	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.957
SUM185PE	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.655359
GSE135350_2_v_4_dexamethasone_human	RummaGEO Drug Perturbation Signatures	1.0	null
infection	GAD High Level Gene-Disease Associations	1.0	0.293278
lineages	GeneRIF Biological Term Annotations	1.0	null
Cleidocranial dysplasia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.464
Medial septal nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.04792
AU565	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GTEX-S7PM-0526-SM-3NM92	GTEx Tissue Sample Gene Expression Profiles	1.0	1.22819
HS737T	CCLE Cell Line Gene Expression Profiles	-1.0	-1.51028
Perturb_12541_KD_UGT2B17_SRP166340	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	3.0748
RRP9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.32243
thymine	GeneRIF Biological Term Annotations	1.0	null
hsa-miR-4328	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
LF-64-NB46_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.318295
JB-65-ON98_0.01uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.468156
FOXC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	47.0226
demonstration	GeneRIF Biological Term Annotations	1.0	null
DUX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.7101
individuals	GeneRIF Biological Term Annotations	1.0	null
Osteogenesis imperfecta	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.794
medial (magnocellular) part of MD	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.33835
BATF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.9578
Brain Lower Grade Glioma_LGG_TCGA-DU-6397-02A-12R-A36H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hsa-miR-4527	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
FURIN_Deficiency_GDS3512_568_mouse_T-cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
ameloblastic layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	2.15225
Cell trailing edge	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.074
KMOE-2	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Acute Myeloid Leukemia_LAML_TCGA-AB-2820-03A-01T-0735-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Medial geniculate complex, medial part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.14635
Nucleus of the lateral lemniscus, horizontal part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.32957
GTEX-NFK9-0926-SM-2HMJU	GTEx Tissue Sample Gene Expression Profiles	1.0	1.09881
AB-61-FY15_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.29999
maxillary cyst	MGI Mouse Phenotype Associations 2023	1.0	null
P3HR1	CCLE Cell Line Gene Expression Profiles	1.0	1.63066
NR3C1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.3144
adult stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05942
local	GeneRIF Biological Term Annotations	1.0	null
BICR10	DepMap CRISPR Gene Dependency	1.0	2.27885
mbl2	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.329
Prostate adenocarcinoma_PRAD_TCGA-EJ-A46G-01A-31R-A26U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
abnormal head morphology	MPO Gene-Phenotype Associations	1.0	null
GTEX-QLQ7-0526-SM-2I5G3	GTEx Tissue Sample Gene Expression Profiles	1.0	0.971468
GSE183474_1_v_0_lats1_human	RummaGEO Gene Perturbation Signatures	1.0	null
496100372_HIP_dementia_no TBI_84_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.21402
Branchiootorenal syndrome 2	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.357
DIFI	DepMap CRISPR Gene Dependency	1.0	2.11186
SLR20	CCLE Cell Line Gene Expression Profiles	-1.0	-1.55476
FD-55-XG26_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.38615
T cell and NK cell immunodeficiency	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.482
Bradyopsia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.297
GTEX-XPT6-0126-SM-4B65S	GTEx Tissue Sample Gene Expression Profiles	1.0	1.17433
abnormal tooth morphology	MPO Gene-Phenotype Associations	1.0	null
H3K4me2_CH12.LX_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
GTEX-V1D1-0526-SM-4JBGW	GTEx Tissue Sample Gene Expression Profiles	1.0	0.832078
GTEX-QDVN-1626-SM-48TZC	GTEx Tissue Sample Gene Expression Profiles	1.0	0.978468
SW 1463	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.985874
Pancreatic adenocarcinoma_PAAD_TCGA-F2-6880-01A-11R-2156-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
skull base neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.240148
difference	GeneRIF Biological Term Annotations	1.0	null
Vascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.148
Congenital bile acid synthesis defect	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.354
superficial stratum of Hb	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.15122
ZNF677	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.2846
lymphoid tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053875
THBS1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.17429
Bed nucleus of the accessory olfactory tract	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.11203
Nucleus of Roller	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.41622
FOXC1	JASPAR Predicted Transcription Factor Targets	1.0	null
OPM-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1682
GTEX-VJYA-1026-SM-4KL21	GTEx Tissue Sample Gene Expression Profiles	1.0	1.31829
reuniens nucleus, main part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.33634
cerebellar nuclei of CbV	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.08119
Ebolavirus(EBOV)_2day_PBMCs_17725815_GSE8317	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	2.06018
GTEX-XPT6-0226-SM-4B65L	GTEx Tissue Sample Gene Expression Profiles	1.0	1.01465
GTEX-WY7C-1126-SM-3NB3A	GTEx Tissue Sample Gene Expression Profiles	1.0	1.88096
Pancreatic adenocarcinoma_PAAD_TCGA-HZ-8519-01A-11R-2404-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-D9-A4Z2-01A-11R-A24X-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
enlarged heart	MGI Mouse Phenotype Associations 2023	1.0	null
cranial nerve disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.077946
Brain Lower Grade Glioma_LGG_TCGA-HT-8015-01B-11R-A28M-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lung adenocarcinoma_LUAD_TCGA-86-8668-01A-11R-2403-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-6939-11A-01R-1915-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Jaw	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.321
tooth disease	DISEASES Curated Gene-Disease Association Evidence Scores	1.0	null
DNAAF9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.93347
Familial partial lipodystrophy type 6	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.214
HTT-18923047-STHDH-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Retrosplenial area, dorsal part, layer 6b	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.13484
PATU8902	CCLE Cell Line Gene CNV Profiles	-1.0	-1.50057
SNG-M	COSMIC Cell Line Gene Mutation Profiles	1.0	null
extracellular region	LOCATE Curated Protein Localization Annotations	1.0	null
synapse part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.11346
p000001	GeneRIF Biological Term Annotations	1.0	null
LMSU	CCLE Cell Line Gene CNV Profiles	-1.0	-2.57839
internal female genital organ	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	1.53602
hybridoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.176972
KYSE-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23291
structure	GeneRIF Biological Term Annotations	1.0	null
GSE182179_0_v_1_kdsr_human	RummaGEO Gene Perturbation Signatures	1.0	null
posterior (caudal) superior temporal cortex (area 22c)_4 mos_M_12296	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.24819
BE-16-VM54_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.524386
LD-22-SA99_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	1.66955
Orbital area, medial part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.19189
GTEX-N7MS-0826-SM-2HML4	GTEx Tissue Sample Gene Expression Profiles	1.0	0.892626
GTEX-RNOR-0526-SM-2TF4O	GTEx Tissue Sample Gene Expression Profiles	1.0	2.03843
CFTR_Deficiency_GDS1843_192_mouse_Lungs - Animals examined at 6 weeks of age	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
Molaris	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.957
Sarcoma_SARC_TCGA-WK-A8XZ-01A-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
r7 part of basomedial reticular formation	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.04366
anterior (rostral) cingulate (medial prefrontal) cortex_16 pcw_M_12287	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.84245
AC-36-FB52_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.305147
GTEX-S95S-0826-SM-4B64N	GTEx Tissue Sample Gene Expression Profiles	1.0	1.10622
Pycnodysostosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.03
GTEX-OIZH-0326-SM-2HMKC	GTEx Tissue Sample Gene Expression Profiles	1.0	1.91338
RA-27-ST16_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	1.01399
Cranium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.16
dentinogenesis imperfecta	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.3433
PK-45H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.71581
epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.56476
hsa-miR-4763-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
GTEX-X638-0326-SM-47JY1	GTEx Tissue Sample Gene Expression Profiles	1.0	1.1984
GSE158458_2_v_1_sorafenib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
kidney	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.594451
Periapical periodontitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.402
urinary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.043335
lateral part of r9B	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.04606
hepatitis c	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.949102
SCC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.95647
Osteogenic cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.951
K029AX	CCLE Cell Line Gene CNV Profiles	-1.0	-1.50824
OC316	DepMap CRISPR Gene Dependency	1.0	2.55526
RAB3A_Mutation - D77G point mutation_GDS2482_704_mouse_Hippocampus	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
fat_a.V1	HPA Tissue Sample Gene Expression Profiles	-1.0	-0.93142
Brain Lower Grade Glioma_LGG_TCGA-P5-A72Z-01A-11R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Enamel erosion	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.727
PE01	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10338
KMS-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.30091
Amelogenesis imperfecta type 3A	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.968
Kidney renal clear cell carcinoma_KIRC_TCGA-AK-3443-01A-02R-1325-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Acute Myeloid Leukemia_LAML_TCGA-AB-2807-03A-01T-0734-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE188570,GSE188571_5_v_2_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
CD-90-SN76_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.404337
Nucleus of the solitary tract, commissural part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.0234
42MGBA	DepMap CRISPR Gene Dependency	1.0	3.14337
family	GeneRIF Biological Term Annotations	1.0	null
estradiol_mus musculus_gpl4134_gse23072	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
abnormal lower incisor color	MGI Mouse Phenotype Associations 2023	1.0	null
Lateral reticular nucleus, magnocellular part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.10121
HNF4G	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.2043
CA SKI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.926393
CDK18	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.39105
Dorsal peduncular area, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.44262
Liver Cirrhosis	DisGeNET Gene-Disease Associations	1.0	null
GSE89154_1_v_3_proscillaridin_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE135350_3_v_5_dexamethasone_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Sweat gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.98
abnormal incisor color	MPO Gene-Phenotype Associations	1.0	null
Head	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.646
primary motor cortex (area M1, area 4)_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.9594
HCC1500	CCLE Cell Line Gene CNV Profiles	1.0	3.25315
Musculoskeletal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.717
hsa-miR-548a-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
hsa-miR-449b	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
kidney_d	HPA Tissue Sample Gene Expression Profiles	1.0	1.17315
GSE134375_4_v_2_stat3_human	RummaGEO Gene Perturbation Signatures	1.0	null
abnormality of the oral cavity	HPO Gene-Disease Associations	1.0	null
adrenal_4d	HPA Tissue Sample Gene Expression Profiles	-1.0	-0.93142
Sarcoma_SARC_TCGA-DX-A6Z2-01A-12R-A36F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
single-organism process	GO Biological Process Annotations 2015	1.0	null
BFTC-909	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.971925
occur	GeneRIF Biological Term Annotations	1.0	null
FOXP2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.1475
HCC1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21584
erythroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.167655
single-organism developmental process	GO Biological Process Annotations 2015	1.0	null
CW-2	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Sox1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	26.6921
internal cortical nucleus of inferior colliculus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.28234
PRRX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.4125
Dental Caries	HuGE Navigator Gene-Phenotype Associations	1.0	null
laminin-1 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.743
tooth enamel	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	3.28292
affected	GeneRIF Biological Term Annotations	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-5971-01A-11R-1686-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hsa-miR-4496	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
Orbital area, ventrolateral part, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.9648
abnormality of the head	HPO Gene-Disease Associations	1.0	null
GTEX-OHPK-1526-SM-3MJGM	GTEx Tissue Sample Gene Expression Profiles	1.0	0.911183
Dental papilla	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.189
Kidney renal clear cell carcinoma_KIRC_TCGA-B8-A54E-01A-11R-A266-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RAX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.4958
inferolateral temporal cortex (area TEv, area 20)_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.12702
DND-41	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Kidney Chromophobe_KICH_TCGA-KL-8344-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
TGIF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.3722
Genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.955
DAOY	CCLE Cell Line Gene CNV Profiles	-1.0	-1.62337
NOL10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.2754
amelogenesis imperfecta, type ib	OMIM Gene-Disease Associations	1.0	null
GSE156115_2_v_1_igf2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
regulation of enamel mineralization	GO Biological Process Annotations 2025	1.0	null
MAFF	ENCODE Transcription Factor Targets	1.0	null
Hypohidrotic ectodermal dysplasia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.566
Alx4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	36.775
posterior (caudal) superior temporal cortex (area 22c)_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.03425
GTEX-WFON-0326-SM-3GIKX	GTEx Tissue Sample Gene Expression Profiles	1.0	0.939727
GSE128634,GSE128636_2_v_0_foxo1_human	RummaGEO Gene Perturbation Signatures	1.0	null
BA-46-RB17_0.01uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.559445
abnormal facial morphology	MPO Gene-Phenotype Associations	1.0	null
BF-34-DG44_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.232281
abnormality of the genital system	GWASdb SNP-Phenotype Associations	1.0	0.106091
NCI-H1355	COSMIC Cell Line Gene Mutation Profiles	1.0	null
LE-60-VC29_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.305842
MN-60	COSMIC Cell Line Gene Mutation Profiles	1.0	null
anterior open-bite malocclusion	HPO Gene-Disease Associations	1.0	null
AD-16-HL96_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	8.17453
FA-28-MT45_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.462746
EA-18-FP00_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	3.74407
dorsolateral prefrontal cortex_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.934723
cerebellar cortex_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.41131
ESX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.3712
GTEX-WEY5-0226-SM-3GIKN	GTEx Tissue Sample Gene Expression Profiles	1.0	1.50268
ectoderm	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	2.19875
EA-18-FP00_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	7.88175
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-7245-11A-01R-2016-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Mouth disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	3.045
GTEX-S4UY-0526-SM-3K2AN	GTEx Tissue Sample Gene Expression Profiles	1.0	1.1944
SC-72-YW56_0.01uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.233908
dorsolateral prefrontal cortex_9 pcw_M_12833	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.23469
Kidney renal clear cell carcinoma_KIRC_TCGA-T7-A92I-01A-11R-A37O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lung adenocarcinoma_LUAD_TCGA-78-7160-01A-11R-2039-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
tooth disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.99271
TGIF2	MotifMap Predicted Transcription Factor Targets	1.0	null
hsa-miR-3190	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
CEBPA-26348894-LIVER-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
r2 part of prepontine raphe nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.02137
GTEX-U3ZN-2226-SM-3DB88	GTEx Tissue Sample Gene Expression Profiles	1.0	1.12301
Perturb_11467_KD_SRSF1_SRP290964	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	17.5498
GTEX-N7MS-1626-SM-3LK5F	GTEx Tissue Sample Gene Expression Profiles	1.0	2.20245
mesenchyme	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.425344
Tooth bud	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.391
r10 basal plate	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.80929
extracellular matrix	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.777298
Bladder Urothelial Carcinoma_BLCA_TCGA-BL-A13J-11A-13R-A10U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
change	GeneRIF Biological Term Annotations	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-BC-A10T-01A-11R-A131-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Kidney Chromophobe_KICH_TCGA-KN-8419-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
COLO-783	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Amelogenesis Imperfecta, Type Ic	CTD Gene-Disease Associations	1.0	2.88009
layer 2 of AOD cortex	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.10372
Liver hepatocellular carcinoma_LIHC_TCGA-QA-A7B7-01A-11R-A32O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Papillary craniopharyngioma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.582
SLC25A45	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.92729
presynaptic active zone	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.516532
GTEX-Q2AH-0526-SM-2I3ED	GTEx Tissue Sample Gene Expression Profiles	1.0	1.21293
KM12	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GTEX-XLM4-2026-SM-4AT4X	GTEx Tissue Sample Gene Expression Profiles	1.0	0.837805
Dentine erosion	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.697
intracellular organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.418077
GSE175787_5_v_2_rhoc_human	RummaGEO Gene Perturbation Signatures	1.0	null
DETROIT562	CCLE Cell Line Gene CNV Profiles	1.0	1.8984
pulp	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.326798
GTEX-P78B-0426-SM-2I5F5	GTEx Tissue Sample Gene Expression Profiles	1.0	1.12085
HSF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.4303
GTEX-RU72-0326-SM-2TF5T	GTEx Tissue Sample Gene Expression Profiles	1.0	1.11791
UACC812	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.677074
Medullary reticular nucleus, ventral part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.47233
GTEX-TKQ1-0003-SM-3NMAE	GTEx Tissue Sample Gene Expression Profiles	1.0	0.974383
GTEX-SIU8-0526-SM-2XCDP	GTEx Tissue Sample Gene Expression Profiles	1.0	1.09344
inferred	GeneRIF Biological Term Annotations	1.0	null
ZBTB4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.35796
AA-62-HP31_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.266502
MEOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.3056
Pharyngeal arch cartilage	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.538
EBF1_GM12878_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
kidney	HPA Tissue Gene Expression Profiles	1.0	1.15552
hsa-miR-450b-5p	TargetScan Predicted Conserved microRNA Targets	1.0	0.598666
Tooth agenesis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.208
Colon	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
palmitoyltransferase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.816699
DAUDI	COSMIC Cell Line Gene Mutation Profiles	1.0	null
ae2	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.287
GTEX-T6MN-0926-SM-32PLX	GTEx Tissue Sample Gene Expression Profiles	1.0	0.954933
alleles	GeneRIF Biological Term Annotations	1.0	null
Osteoporosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.056
OC-314	COSMIC Cell Line Gene Mutation Profiles	1.0	null
HLF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.8646
sex chromosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.255834
CE-04-HT15_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.402928
GTEX-N7MS-0126-SM-3TW8O	GTEx Tissue Sample Gene Expression Profiles	1.0	2.13982
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A3AB-06A-11R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
dorsal nucleus of the lateral lemniscus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.41621
496100330_PCx_possible Alzheimer's disease_no TBI_100+_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.21744
amygdaloid complex_13 yrs_F_12831	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.70982
GTEX-T6MO-0003-SM-3NMAG	GTEx Tissue Sample Gene Expression Profiles	1.0	0.989392
Prostate adenocarcinoma_PRAD_TCGA-G9-6338-01A-12R-1965-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
G-361	COSMIC Cell Line Gene Mutation Profiles	1.0	null
abnormality of the male genitalia	GWASdb SNP-Phenotype Associations	1.0	0.226888
DA-10-VU83_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.251722
DC-45-WU45_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.316965
ZNF184	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.0644
H3K4me1_thymus_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
PMC11167905-10194_2024_1805_MOESM1_ESM.xlsx-S6-Table_S6_MR_results_of_brain_eQTLs_and_migraine_NR3C2	Rummagene Transcription Factor Associations 2026	1.0	null
Nephrocalcinosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.971
Lung adenocarcinoma_LUAD_TCGA-78-7539-01A-11R-2066-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE128634,GSE128636_1_v_3_foxo1_human	RummaGEO Gene Perturbation Signatures	1.0	null
GTEX-X62O-0826-SM-46MW8	GTEx Tissue Sample Gene Expression Profiles	1.0	0.921352
Koelliker-Fuse nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.71161
GSE195568_3_v_4_palbociclib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
leukocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053806
Female reproductive gland	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	4.539
PMC11033585-BLOOD_BLD-2023-021752-mmc2.xlsx-S10_DGEA_IKZF1-Supplemental_Table_10_Differentially_expressed_genes_between_IKZF1_and_all_other_subcluster_IKZF1	Rummagene Transcription Factor Associations 2026	1.0	null
EC-01-PH79_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.548677
POLR2A_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ASH3	DepMap CRISPR Gene Dependency	1.0	2.02983
HCC2885	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.971925
HDAC1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GTEX-XGQ4-0326-SM-4GIEE	GTEx Tissue Sample Gene Expression Profiles	1.0	1.11675
Tooth resorption	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.775
FOXK2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.5823
Arthropathy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.007
abnormal incisor morphology	MGI Mouse Phenotype Associations 2023	1.0	null
POU2F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.9192
connective tissue cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.055185
NECTIN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.50243
GTEX-U8T8-1126-SM-4DXUE	GTEx Tissue Sample Gene Expression Profiles	1.0	1.05036
KMS26	DepMap CRISPR Gene Dependency	1.0	2.72738
TLX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.9768
GTEX-QV44-0526-SM-2S1RE	GTEx Tissue Sample Gene Expression Profiles	1.0	1.39811
GTEX-PX3G-0326-SM-2I3EO	GTEx Tissue Sample Gene Expression Profiles	1.0	1.27805
LC-54-XS57_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.21288
GSE186810,GSE186813_7_v_0_furin_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
EC-87-ZB49_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.242884
FOXL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.9568
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-7238-11A-01R-2016-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lung adenocarcinoma_LUAD_TCGA-67-3774-01A-01R-0946-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CB-16-SY72_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	2.42937
GFI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.5068
primary auditory cortex (core)_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.37458
GTEX-S7SE-0326-SM-4AT5Q	GTEx Tissue Sample Gene Expression Profiles	1.0	0.903411
abnormal compact bone morphology	MGI Mouse Phenotype Associations 2023	1.0	null
MAFK_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC1937	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.34634
FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.9761
KMS28BM	CCLE Cell Line Gene Expression Profiles	1.0	1.60693
Hmga1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	67.3285
22RV1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
POLR2A_GM12878_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Odontoclast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.149
GTEX-WHPG-0004-SM-3NMDO	GTEx Tissue Sample Gene Expression Profiles	1.0	0.903917
r9 part of basointermediate reticular formation	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.34989
skin_5e	HPA Tissue Sample Gene Expression Profiles	-1.0	-0.93142
NR6A1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.9758
Tooth disease	DISEASES Curated Gene-Disease Association Evidence Scores 2025	1.0	4.0
FB-66-UU47_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	8.22122
Bone remodeling disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.585
Genetic Predisposition to Disease	HuGE Navigator Gene-Phenotype Associations	1.0	null
odontoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.45239
KMH-2	COSMIC Cell Line Gene Mutation Profiles	1.0	null
EVX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.9135
Post-translational protein modification	Reactome Pathways 2024	1.0	null
H3K4me1_CH12.LX_mm9_4	ENCODE Histone Modification Site Profiles	1.0	null
bonemarrow_6b	HPA Tissue Sample Gene Expression Profiles	-1.0	-0.93142
Dental pulp necrosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.354
nonsense	GeneRIF Biological Term Annotations	1.0	null
UA-20-YK17_0.01uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.334963
periventricular stratum of r5Tr	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.01985
GTEX-SNMC-0126-SM-2XCFO	GTEx Tissue Sample Gene Expression Profiles	1.0	1.68316
Presynaptic active zone cytoplasmic component	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.212
MB-49-LL22_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.704527
BARX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.6711
lymphnode_5b	HPA Tissue Sample Gene Expression Profiles	-1.0	-0.93142
Disease of metabolism	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.451
Exocrine gland	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
OlfactoryBulb	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	0.890596
Epitheliocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.731
DA-17-XI26_0.01uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.39504
GTEX-XUJ4-0626-SM-4BOOO	GTEx Tissue Sample Gene Expression Profiles	1.0	1.07038
abnormal mouth morphology	MGI Mouse Phenotype Associations 2023	1.0	null
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.971925
Seminal vesicle	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
Sarcoma_SARC_TCGA-K1-A3PN-01A-11R-A22K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Cheek pouch	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.661
GTEX-QVUS-0226-SM-3GIJY	GTEx Tissue Sample Gene Expression Profiles	1.0	1.89851
abnormal tooth mineralization	MPO Gene-Phenotype Associations	1.0	null
upper (rostral) rhombic lip_9 pcw_M_12833	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.31362
Medial amygdalar nucleus, posterodorsal part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.23106
COLO-668	COSMIC Cell Line Gene Mutation Profiles	1.0	null
hsa-miR-1225-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
Dental follicle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.949
Dmrt1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.4773
NCI-H1563	COSMIC Cell Line Gene Mutation Profiles	1.0	null
FGFR3_knockdown_174_GSE41035	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	-1.0	-1.99335
abnormal digestion	MGI Mouse Phenotype Associations 2023	1.0	null
ae3	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.526
GTEX-R55E-1026-SM-2TC5S	GTEx Tissue Sample Gene Expression Profiles	1.0	0.860307
ventrolateral prefrontal cortex_37 yrs_M_12303	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.845049
GTEX-WH7G-0326-SM-3NMBH	GTEx Tissue Sample Gene Expression Profiles	1.0	0.952101
MAFF_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H2AFZ_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GTEX-V955-1926-SM-4KL1L	GTEx Tissue Sample Gene Expression Profiles	1.0	1.33209
superficial stratum of JcPL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.6224
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-6959-11A-01R-1915-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
abnormality of male internal genitalia	GWASdb SNP-Phenotype Associations	1.0	0.730636
PRDM1	JASPAR Predicted Transcription Factor Targets	1.0	null
HTT	ChEA Transcription Factor Targets	1.0	null
Amelogenesis imperfecta type 1J	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.19
MEF2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.8508
GTEX-SN8G-0326-SM-32PLG	GTEx Tissue Sample Gene Expression Profiles	1.0	0.925963
Desmosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.172
ALX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.4915
abnormal enzyme/coenzyme activity	MGI Mouse Phenotype Associations 2023	1.0	null
superficial stratum of r1BI	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.63033
Kidney renal clear cell carcinoma_KIRC_TCGA-CZ-5463-11A-01R-1503-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Amelogenesis imperfecta	ClinVar Gene-Phenotype Associations 2025	1.0	null
GTEX-UJMC-0526-SM-3GAE3	GTEx Tissue Sample Gene Expression Profiles	1.0	1.76735
MA-31-VM30_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.436745
RAB3A_KO_GDS2483_700_mouse_Cortex	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
CDX2-22108803-LS180-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
ZR7530	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.859275
HOXA5	JASPAR Predicted Transcription Factor Targets	1.0	null
cell cortex part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.200999
exon	GeneRIF Biological Term Annotations	1.0	null
GTEX-SIU7-0426-SM-2XCDX	GTEx Tissue Sample Gene Expression Profiles	1.0	0.889963
FOSL1::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.7977
COLO680N	CCLE Cell Line Gene CNV Profiles	1.0	1.76964
ESS-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
HCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.869583
Autosomal recessive hypophosphatemic rickets	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.344
reproductive system	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.23362
LB1047RCC	DepMap CRISPR Gene Dependency	1.0	2.63426
BT-549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.869583
growth/size/body phenotype	MPO Gene-Phenotype Associations	1.0	null
Disease by infectious agent	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.075
causes	GeneRIF Biological Term Annotations	1.0	null
primary somatosensory cortex (area S1, areas 3,1,2)_12 pcw_F_12960	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.949512
WA-90-HU51_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.795469
TCF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.4809
r7 part of gigantocellular reticular area	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.09118
Sarcoma_SARC_TCGA-PC-A5DO-01A-11R-A26T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
periventricular stratum of r8Tr	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.23104
CAL-85-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
extracellular region part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
small superior vagus ganglion	IMPC Knockout Mouse Phenotypes	1.0	null
Outer dental epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.389
Endoplasmic reticulum	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
autoimmune polyendocrine syndrome type 1	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.292616
hsa-miR-449a	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
hsa-miR-3978	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.13535
PMC9124206-41419_2022_4940_MOESM8_ESM.xlsx-DEG_PACA-US-ID_PTF1A	Rummagene Transcription Factor Associations 2026	1.0	null
placenta_6a	HPA Tissue Sample Gene Expression Profiles	-1.0	-0.93142
Kidney renal clear cell carcinoma_KIRC_TCGA-B8-4619-01A-02R-1325-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Presynaptic active zone	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.188
medial (main) part of Med	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.24637
H2BK20ac_IMR90	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
hippocampus (hippocampal formation)_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.928528
PMC10828394-41698_2024_509_MOESM1_ESM.pdf-56-ELF2_ELF2	Rummagene Transcription Factor Associations 2026	1.0	null
hsa-miR-4276	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
embryonic stem feeder layer	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-1.32991
SOX4	MotifMap Predicted Transcription Factor Targets	1.0	null
superficial stratum of isLim	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.06096
Sox5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	17.5242
amelogenesis imperfecta	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	2.9334
ID4_KO_GDS4178_620_mouse_Splenic B cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
Tooth enamel	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	3.832
Ghost	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.093
KD-04-TL80_0.01uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.225189
Perturb_1202_KO_Sp1/Zbtb7a/Klf16_SRP302435	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	4.74284
DESI2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.30613
Hypercementosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.301
Dermatitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.248
PK45H	CCLE Cell Line Gene CNV Profiles	-1.0	-1.72514
YA-92-YO01_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.520747
BICR78	DepMap CRISPR Gene Dependency	1.0	4.1718
GTEX-QLQW-0726-SM-447AA	GTEx Tissue Sample Gene Expression Profiles	1.0	0.868209
CAMA-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.853316
Osteogenic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.833
GSE245778_1_v_0_runx1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
mantle zone of r2BM	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.29835
MD-91-JM80_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.378706
Medial amygdalar nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.30652
GSE94849_7_v_4_pinometostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
GTEX-XV7Q-0826-SM-4BRV7	GTEx Tissue Sample Gene Expression Profiles	1.0	1.41753
MAZ_02_199	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	4.64386
GSE182179_5_v_4_kdsr_human	RummaGEO Gene Perturbation Signatures	-1.0	null
wholeexome	GeneRIF Biological Term Annotations	1.0	null
Nucleus of the lateral olfactory tract, molecular layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.56419
GTEX-XUYS-0326-SM-47JX2	GTEx Tissue Sample Gene Expression Profiles	1.0	1.08557
CE-66-GR30_0.01uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.34257
GSE180951_6_v_3_bleomycin_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
HCC95	DepMap CRISPR Gene Dependency	1.0	11.0096
HOXD9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	49.1824
NR2F6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.4778
posteromedial visual area, layer 5	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.94023
MAN2B1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.45807
periventricular stratum of r10Lim	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.53546
GTEX-S7PM-0626-SM-4AD4Q	GTEx Tissue Sample Gene Expression Profiles	1.0	1.73084
GTEX-TML8-0526-SM-32QOQ	GTEx Tissue Sample Gene Expression Profiles	1.0	1.16658
CE-24-LQ98_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.289799
EMX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.1875
GBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.3627
r7 portion of the hypoglossal motor nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.58863
Invertebrate mandible	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.822
lateral tuberal nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.21027
mutans	GeneRIF Biological Term Annotations	1.0	null
DUXA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	67.1262
B cell_Kidney_Human	CellMarker Gene-Cell Type Associations	1.0	null
superficial stratum of CoPL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.0942
GTEX-WH7G-0426-SM-3NMBJ	GTEx Tissue Sample Gene Expression Profiles	1.0	0.932525
tissues, cell types and enzyme sources	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	1.53602
SOX13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.5147
abnormal lower incisor morphology	MGI Mouse Phenotype Associations 2023	1.0	null
Immune system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.189
Carapace	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.717
skeletal system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.406315
Brain Lower Grade Glioma_LGG_TCGA-HW-A5KJ-01A-12R-A27Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
KIF15	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.234
Ameloblastoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.693
HMV-II	COSMIC Cell Line Gene Mutation Profiles	1.0	null
organ morphogenesis	GO Biological Process Annotations 2015	1.0	null
HCC2911	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.19301
CLDN9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.79478
H3K27me3_MEL cell line_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
related	GeneRIF Biological Term Annotations	1.0	null
Heimler syndrome 1	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.504
hyperopia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.220424
autoimmune disease of urogenital tract	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.641433
liver	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.73803
LXF-289	COSMIC Cell Line Gene Mutation Profiles	1.0	null
pitting	GeneRIF Biological Term Annotations	1.0	null
GTEX-OHPN-2726-SM-2I5H4	GTEx Tissue Sample Gene Expression Profiles	1.0	0.849376
posteromedial visual area, layer 2/3	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.71008
HCC2279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.54587
LN464	Achilles Cell Line Gene Essentiality Profiles	1.0	1.39551
GTEX-TKQ2-1526-SM-4DXUN	GTEx Tissue Sample Gene Expression Profiles	1.0	1.32908
disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.1755
GATA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.6637
Integumentary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.349
GTEX-Q2AH-1826-SM-2S1Q2	GTEx Tissue Sample Gene Expression Profiles	1.0	0.898384
QD-75-XB03_0.01uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.495483
tooth germ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	2.67762
Salivary gland	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
Tcof1_KD_GDS998_155_mouse_neuroblastoma N1E-115 cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
Dental lamina	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.014
TEAD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.8944
HSC-3	COSMIC Cell Line Gene CNV Profiles	1.0	4.51153
Pou5f1::Sox2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	40.4975
KMS21BM	CCLE Cell Line Gene Expression Profiles	1.0	2.13763
tfip11	GeneRIF Biological Term Annotations	1.0	null
male reproductive organ cancer	GWASdb SNP-Disease Associations	1.0	0.393604
integument	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.18068
GSE195559_8_v_4_notch1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Synostosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.06
GSE171179,GSE171181_0_v_1_e7107_human	RummaGEO Drug Perturbation Signatures	1.0	null
L363	Achilles Cell Line Gene Essentiality Profiles	1.0	1.37829
bonemarrow	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	2.09859
GSE180951_2_v_3_bleomycin_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
H2AFZ_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GSE120612_6_v_5_etoposide_human	RummaGEO Drug Perturbation Signatures	1.0	null
Immunodeficiency 10	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.512
nucleus of the stria terminalis, medial division, ventral part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.1703
Amelogenesis imperfecta type 1B	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.334
CTCF_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Perturb_13390_OE_NSD2_SRP199225	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.76798
nephrocalcinosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.167452
misalignment of teeth	HPO Gene-Disease Associations	1.0	null
G61	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02979
Hypohidrosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.097
gland	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.027006
ZNF154	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.65156
GTEX-XV7Q-2926-SM-4BRUL	GTEx Tissue Sample Gene Expression Profiles	1.0	1.73117
GTEX-OHPK-0326-SM-2HMJO	GTEx Tissue Sample Gene Expression Profiles	1.0	1.10853
proteinaceous extracellular matrix	GO Cellular Component Annotations 2015	1.0	null
GTEX-OHPM-2126-SM-3LK75	GTEx Tissue Sample Gene Expression Profiles	1.0	1.38046
GTEX-OHPM-0326-SM-33HCA	GTEx Tissue Sample Gene Expression Profiles	1.0	1.29531
AD-06-OB47_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.284054
heterogeneous	GeneRIF Biological Term Annotations	1.0	null
LB2518-MEL	COSMIC Cell Line Gene Mutation Profiles	1.0	null
PMC4632482-13039_2015_190_MOESM3_ESM.xlsx-Part_C_63_genes_with_AR-Unnamed_1_AR	Rummagene Transcription Factor Associations 2026	1.0	null
HUG1N	CCLE Cell Line Gene CNV Profiles	-1.0	-3.19829
GTEX-T6MN-2026-SM-4DM7L	GTEx Tissue Sample Gene Expression Profiles	1.0	1.41085
Disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.502
kidney_b	HPA Tissue Sample Gene Expression Profiles	1.0	0.923872
GSE140651,GSE140653_2_v_0_med1_human	RummaGEO Gene Perturbation Signatures	1.0	null
PA-25-OV46_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.218191
BC-02-SI44_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.418157
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A3J8-06A-11R-A20F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCIH520	DepMap CRISPR Gene Dependency	1.0	3.01645
WD-08-QT63_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.30896
CD-47-YL43_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.230172
cone-rod dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.651
PA-TU-8902	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.971925
whole plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052466
mammalian phenotype	MPO Gene-Phenotype Associations	1.0	null
abnormality of cardiovascular system physiology	GWASdb SNP-Phenotype Associations	1.0	0.51476
ONECUT1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.6001
Lung squamous cell carcinoma_LUSC_TCGA-39-5034-01A-01R-1443-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GTEX-TSE9-0526-SM-3DB7Z	GTEx Tissue Sample Gene Expression Profiles	1.0	1.10564
Cellular bud neck	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.652
APOD_OE_GDS3913_489_mouse_Cerebellum	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
GTEX-OOBK-2126-SM-3LK5T	GTEx Tissue Sample Gene Expression Profiles	1.0	1.08076
MIXL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.3899
GTEX-TMZS-0326-SM-3DB9P	GTEx Tissue Sample Gene Expression Profiles	1.0	1.03015
GTEX-XQ8I-0226-SM-4BOPM	GTEx Tissue Sample Gene Expression Profiles	1.0	1.0112
acid	GeneRIF Biological Term Annotations	1.0	null
GSU	CCLE Cell Line Gene Expression Profiles	-1.0	-2.40964
PMC11799530-12276_2024_1380_MOESM1_ESM.xlsx-DEG_KD_PC-Ensembl_ID_AR	Rummagene Transcription Factor Associations 2026	1.0	null
GTEX-WK11-2526-SM-3NM9Y	GTEx Tissue Sample Gene Expression Profiles	1.0	1.37987
Benign meningioma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.11
periventricular stratum of r7Co	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.99935
retinal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.046713
GD-66-XE49_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.257422
mantle zone of r9BI	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.48813
Sarcoma_SARC_TCGA-DX-A3UC-01A-11R-A30C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC5444746-oncotarget-08-30328-s002.xlsx-SI01_ChIPSeq_H3K9me_AR-Gene_Symbol_AR	Rummagene Transcription Factor Associations 2026	1.0	null
inferolateral temporal cortex (area TEv, area 20)_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.28165
CAPAN-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23291
monogenic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.049533
GTEX-PLZ4-0926-SM-2S1OI	GTEx Tissue Sample Gene Expression Profiles	1.0	0.917612
GTEX-XUJ4-0526-SM-4BOON	GTEx Tissue Sample Gene Expression Profiles	1.0	1.61397
rostral interstitial nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.08893
KU812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02979
GBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.0617
HUP-T3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.978751
ME-47-KQ59_0.01uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.258607
CA-37-NI01_0.01uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.277354
hypoplastic	GeneRIF Biological Term Annotations	1.0	null
ovarian dysfunction	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.187719
GTEX-V955-0726-SM-3GAFG	GTEx Tissue Sample Gene Expression Profiles	1.0	0.944967
Presynapse	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.912
Brain Lower Grade Glioma_LGG_TCGA-HT-8106-01A-11R-2404-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
TT	CCLE Cell Line Gene CNV Profiles	1.0	1.38436
Tonsillitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.009
medial amygdala, posterodorsal part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.16755
AD-51-FB60_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	1.02539
U266B1	CCLE Cell Line Gene Expression Profiles	1.0	1.48247
muscle	GTEx Tissue Gene Expression Profiles	1.0	0.885321
HOXB8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.0586
tooth agenesis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.919673
placenta_6b	HPA Tissue Sample Gene Expression Profiles	-1.0	-0.93142
ASCL2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.05557
KHM1B	CCLE Cell Line Gene Expression Profiles	1.0	1.53459
abnormal heart morphology	IMPC Knockout Mouse Phenotypes	1.0	null
HCC366	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.15175
hsa-miR-34c-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
digestive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.695354
r8 portion of the hypoglossal motor nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.58361
urogenital system	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.137257
Eggshell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.054
Acute Myeloid Leukemia_LAML_TCGA-AB-2970-03A-01T-0734-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
LNCAP-CLONE-FGC	COSMIC Cell Line Gene Mutation Profiles	1.0	null
alitretinoin_homo sapiens_gpl6480_gse43090	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
GSE77108_6_v_7_saha_human	RummaGEO Drug Perturbation Signatures	1.0	null
Medial amygdalar nucleus, posterodorsal part, sublayer a	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.1902
Kohlschutter-Tonz syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.501
adamantinous craniopharyngioma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.724907
urogenital system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.3219
r9 portion of the hypoglossal motor nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.41622
sclerosing cholangitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.699517
MAFK_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
abnormal mouth morphology	MPO Gene-Phenotype Associations	1.0	null
periventricular stratum of r9Lim	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.25732
GTEX-WZTO-1326-SM-3NM8X	GTEx Tissue Sample Gene Expression Profiles	1.0	0.886238
p001	GeneRIF Biological Term Annotations	1.0	null
caudal ganglionic eminence_9 pcw_M_12833	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.8997
Dental caries	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.88
superficial stratum of r7Co	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.47855
golgi apparatus	LOCATE Predicted Protein Localization Annotations	1.0	null
anterior olfactory area, dorsal part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.12642
BB-77-QQ71_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.540551
Ectoderm	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	3.055
ameloblast differentiation	GO Biological Process Annotations 2025	1.0	null
DMS454	CCLE Cell Line Gene Expression Profiles	1.0	1.82386
layer 1 of AOD cortex	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.01985
HCC56	CCLE Cell Line Gene Expression Profiles	-1.0	-1.95021
intracellular membrane-bounded organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
Amelogenesis imperfecta type 1C	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.322
JUN::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.4843
fenofibrate_homo sapiens_gpl4044_gse15483	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.049883
intermediate stratum of r9BI	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.34835
IM-95	COSMIC Cell Line Gene Mutation Profiles	1.0	null
phenotypes	GeneRIF Biological Term Annotations	1.0	null
Primary somatosensory area, upper limb, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.41772
CA-66-YB17_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.297973
GTEX-RNOR-0826-SM-2TF5C	GTEx Tissue Sample Gene Expression Profiles	1.0	1.05744
GTEX-X4EO-0526-SM-3P5Z3	GTEx Tissue Sample Gene Expression Profiles	1.0	0.830753
lateral parabrachial nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.28234
stratum intermedium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.824849
r5 part of basointermediate reticular formation	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.01261
HOXB3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.0907
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-4834-01A-01R-1305-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lung adenocarcinoma_LUAD_TCGA-50-6597-01A-11R-1858-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Artery disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.06
Presynaptic cytoskeleton	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.21
total	GeneRIF Biological Term Annotations	1.0	null
Collagen network	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.56
dorsolateral prefrontal cortex_16 pcw_M_12879	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.864254
D283MED	CCLE Cell Line Gene Expression Profiles	1.0	1.37572
sensory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.047074
GTEX-SUCS-0326-SM-32PLL	GTEx Tissue Sample Gene Expression Profiles	1.0	1.24576
PIK3CA_mutant_27_GDS4053	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	-1.0	-2.0289
OELE	Achilles Cell Line Gene Essentiality Profiles	1.0	1.22967
CTCF	ENCODE Transcription Factor Targets	1.0	null
Hypomineralization Of Enamel Of Tooth	DisGeNET Gene-Disease Associations	1.0	null
normoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.167655
Atoh1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	23.5987
HOXA4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.2972
deletion	GeneRIF Biological Term Annotations	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-DD-A1EE-01A-11R-A131-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
eye and adnexa disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.048515
PEER	CCLE Cell Line Gene CNV Profiles	1.0	1.78432
RCOR1	ChEA Transcription Factor Targets	1.0	null
periodontal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.472982
GSE223334_1_v_2_bcl11b_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
FOXG1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.5172
Osteogenesis imperfecta type 1	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.273
SK-GT-2	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GA-88-CF36_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	2.66703
HOXC4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.0197
JURKAT	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Dentin	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	3.2
heart_5b	HPA Tissue Sample Gene Expression Profiles	1.0	1.1184
r1 part of lateral pontine nuclei	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.63033
RAX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.4223
GTEX-QVJO-0126-SM-3GIK4	GTEx Tissue Sample Gene Expression Profiles	1.0	1.18202
Lip epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.511
abnormal tooth hard tissue morphology	MPO Gene-Phenotype Associations	1.0	null
hypophosphatasia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.496175
NCI-H1838	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GTEX-XQ8I-2026-SM-4BOOL	GTEx Tissue Sample Gene Expression Profiles	1.0	1.18477
orofacial cleft	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.218374
GTEX-OOBJ-2126-SM-3NB1N	GTEx Tissue Sample Gene Expression Profiles	1.0	1.06418
Orbital area, medial part, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.60225
cytoplasmic part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.429465
sella turcica neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.260891
SARS-BatSRBD_Day7_None_GSE50000	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.94046
Oral epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.855
FB-66-UU47_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	11.1471
TGFB2_KD_GDS4483_351_mouse_Embryonic palatal tissue	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
RKO	CCLE Cell Line Gene Expression Profiles	-1.0	-2.39551
Adrenocortical carcinoma_ACC_TCGA-PK-A5H9-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GA-88-CF36_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	3.67945
primary auditory cortex (core)_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.873331
encoded	GeneRIF Biological Term Annotations	1.0	null
SUM 1315M02	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.07872
PMC10661700-41525_2023_383_MOESM2_ESM.xlsx-Supp_Table6_gnomAD_EUR_GCR-SYMBOL_NR3C1	Rummagene Transcription Factor Associations 2026	1.0	null
adrenal gland	GTEx Tissue Gene Expression Profiles	-1.0	-0.858792
H2AFZ_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GTEX-T5JC-1526-SM-4DM68	GTEx Tissue Sample Gene Expression Profiles	1.0	1.38094
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-FF-A7CR-01A-11R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ESO51	COSMIC Cell Line Gene Mutation Profiles	1.0	null
decreased compact bone area	MGI Mouse Phenotype Associations 2023	1.0	null
proteinaceous extracellular matrix	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.512862
hsa-miR-548z	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.9446
IDI1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.52126
PECAPJ15	CCLE Cell Line Gene Expression Profiles	-1.0	-1.53291
Anterior Open Bite	DisGeNET Gene-Disease Associations	1.0	null
A1207	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.15374
Amelogenesis imperfecta hypomaturation type 2A2	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.823
496100346_FWM_no dementia_TBI_81_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.23631
GSE246911,GSE246913_4_v_1_arid1a_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
extracellular region	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.641001
SOX8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.7323
OCUBM	DepMap CRISPR Gene Dependency	1.0	2.6787
GE-17-FE71_0.01uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.282149
u	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.548
EFO-27	COSMIC Cell Line Gene Mutation Profiles	1.0	null
SKBR3	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.600477
TC-80-LY86_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.811039
GSE174498,GSE174500_2_v_7_asparaginase_human	RummaGEO Drug Perturbation Signatures	-1.0	null
biological_process	GO Biological Process Annotations 2015	1.0	null
Inner dental epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.747
laminin-5 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.01
GSE225901_0_v_1_dexamethasone_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Cytoplasmic region	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.062
striatum_13 pcw_F_12834	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.07229
SW 837	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.853316
ZNF622_02_108	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	4.24793
Regio oralis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.727
Bladder Urothelial Carcinoma_BLCA_TCGA-E7-A7PW-01A-11R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC8437976-41416_2021_1470_MOESM2_ESM.xls-List_of_MAF_in_SNP_Rectum-Hugo_Symbol_MAF	Rummagene Transcription Factor Associations 2026	1.0	null
superficial stratum of TTe	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.0011
HOXA10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.6452
t2 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.517678
GSE76425_0_v_10_lenalidomide_human	RummaGEO Drug Perturbation Signatures	1.0	null
PB-18-HD85_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.262031
Amelogenesis imperfecta type 1E	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.436
Dental enamel hypoplasia	DISEASES Curated Gene-Disease Association Evidence Scores 2025	1.0	4.0
r1 part of intermediate nucleus of the lateral lemniscus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.11529
HEP3B217	CCLE Cell Line Gene CNV Profiles	1.0	1.7815
COV413B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10893
External encapsulating structure	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
Keratocyst	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.859
Liver hepatocellular carcinoma_LIHC_TCGA-DD-A113-01A-11R-A131-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Molybdopterin cofactor (Moco) biosynthesis adenylyltransferase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.699
Alx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	30.689
endoplasmic reticulum lumen	GO Cellular Component Annotations 2023	1.0	null
A_CA_04_2009_4dayMOI-10^3_None_GSE37569	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.56881
Amelogenesis imperfecta type 3	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	3.002
MOLT-4	COSMIC Cell Line Gene Mutation Profiles	1.0	null
COLO680N	DepMap CRISPR Gene Dependency	1.0	3.57256
KMS11	CCLE Cell Line Gene Expression Profiles	1.0	1.97581
OF-05-CB18_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.809646
GTEX-P4PP-0326-SM-33HC4	GTEx Tissue Sample Gene Expression Profiles	1.0	1.22738
GSE151782_3_v_7_aim2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GTEX-XGQ4-0226-SM-4GIDS	GTEx Tissue Sample Gene Expression Profiles	1.0	0.859424
Anterior olfactory nucleus, posteroventral part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.08563
Bone resorption disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.056
Laminin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.866
GTEX-OOBJ-0326-SM-33HBO	GTEx Tissue Sample Gene Expression Profiles	1.0	1.20582
BT549	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.68973
GSE149035_7_v_0_hepacam_human	RummaGEO Gene Perturbation Signatures	-1.0	null
hsa-miR-2110	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
HCC1162	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.971925
Sarcoma_SARC_TCGA-K1-A42X-02A-11R-A24X-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Uterus	GTEx Tissue Gene Expression Profiles 2023	1.0	0.683141
Keratin filament	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.672
Prostate adenocarcinoma_PRAD_TCGA-VP-A87E-01A-31R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.040328
GSE120612_7_v_1_etoposide_human	RummaGEO Drug Perturbation Signatures	1.0	null
GTEX-XGQ4-0526-SM-4AT6C	GTEx Tissue Sample Gene Expression Profiles	1.0	0.977127
palate	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.226411
MIH complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.568
FOXA3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.6007
AF-60-GR11_0.01uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.560891
TEF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.352
hydrometra	IMPC Knockout Mouse Phenotypes	1.0	null
hematopoietic system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.425344
amino	GeneRIF Biological Term Annotations	1.0	null
KLE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.849474
SQ1	CCLE Cell Line Gene CNV Profiles	1.0	1.44789
Long bone	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.285
membrane-bounded organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
OVCAR-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09103
Uterine Carcinosarcoma_UCS_TCGA-NA-A4QW-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
disease of cellular proliferation	GWASdb SNP-Disease Associations	1.0	0.042354
increased lean body mass	MGI Mouse Phenotype Associations 2023	1.0	null
BE-49-AQ65_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.376352
NCI-N87	COSMIC Cell Line Gene Mutation Profiles	1.0	null
CD33+_Myeloid	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-0.914949
delayed tooth eruption	MPO Gene-Phenotype Associations	1.0	null
MYF6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.4391
Disease	DISEASES Curated Gene-Disease Association Evidence Scores 2025	1.0	4.0
SNB19	CCLE Cell Line Gene CNV Profiles	1.0	2.50415
PMC11390959-41598_2024_70075_MOESM3_ESM.xlsx-520_DMD_common_down_gene_list-HES4_HES4	Rummagene Transcription Factor Associations 2026	1.0	null
r5 part of posteroventral cochlear nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.12053
animal	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	1.53602
Brachyolmia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.076
female reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.045707
Nervous system benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.11
GTEX-S32W-0626-SM-2XCBG	GTEx Tissue Sample Gene Expression Profiles	1.0	1.24533
hsa-miR-4635	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
GSE195559_8_v_5_notch1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Dental plaque	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.775
GTEX-WHPG-0826-SM-3NMBF	GTEx Tissue Sample Gene Expression Profiles	1.0	1.12551
Benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.44
POU4F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.31
H3K9me3_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
mantle zone of r5BI	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.06058
JUND-26020271-SMOOTH-MUSCLE-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
GSE186810,GSE186813_7_v_0_furin_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
pineal_day	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-0.949695
8-MG-BA	COSMIC Cell Line Gene Mutation Profiles	1.0	null
abnormal tooth color	MPO Gene-Phenotype Associations	1.0	null
EIF4A2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.65988
WICH complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.55
Agranular insular area, ventral part, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.05568
AB-17-DF74_0.01uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.944632
H3K4me3_K562_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
dental fluorosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.58005
ameloblastoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.06426
Autoimmune disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.001
gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.555274
Lek	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.504
posteromedial visual area, layer 6a	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.5486
Pheochromocytoma and Paraganglioma_PCPG_TCGA-QT-A5XJ-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HOXA6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.3722
biomineral tissue development	GO Biological Process Annotations 2015	1.0	null
NR1H2::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	49.56
Dentinogenesis imperfecta	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.649
r9 part of basomedial reticular formation	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.3037
amelogenesis imperfecta	HPO Gene-Disease Associations	1.0	null
dental caries	GAD Gene-Disease Associations	1.0	null
GTEX-OIZF-1526-SM-3MJGY	GTEx Tissue Sample Gene Expression Profiles	1.0	1.25159
WC-09-GD62_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	4.12079
anterior tegmental nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.28829
SU-DHL-6	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.75352
ES5	DepMap CRISPR Gene Dependency	1.0	2.86131
JEKO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.978751
BB-27-MC77_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.472437
STAT3_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HSC3	CCLE Cell Line Gene CNV Profiles	1.0	2.05288
EBC1	CCLE Cell Line Gene CNV Profiles	1.0	1.4783
H2AFZ_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Osteopetrosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.356
S0-EE-WJKI_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.335715
GTEX-U3ZH-1926-SM-4DXTR	GTEx Tissue Sample Gene Expression Profiles	1.0	1.51613
independent	GeneRIF Biological Term Annotations	1.0	null
Enamel epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	3.019
external cortical nucleus of inferior colliculus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.89824
acquired metabolic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.045834
GSE164874_5_v_0_prednisolone_human	RummaGEO Drug Perturbation Signatures	-1.0	null
inner dental epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.342971
pituitary	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	1.32603
intermediate part of r5B	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.05936
extracellular matrix	GO Cellular Component Annotations 2015	1.0	null
ARID3A_02_193	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	4.08746
Sublingual gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.595
TE8	CCLE Cell Line Gene Expression Profiles	-1.0	-1.50884
spinalcordlower	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-0.846017
DB-93-SW55_0.01uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.221083
NAMALWA	COSMIC Cell Line Gene Mutation Profiles	1.0	null
NURR1	MotifMap Predicted Transcription Factor Targets	1.0	null
GSE142210_4_v_7_panobinostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
LD-98-CY91_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.278006
FOXC1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	79.0782
ED-10-ED67_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.457075
mouth	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	2.36878
SOX10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.4564
WIDR	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.38016
Ruffle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.836
sequencing	GeneRIF Biological Term Annotations	1.0	null
extracellular region part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.433801
MDAMB453	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.926704
Root apex	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.197
posteromedial visual area, layer 4	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.48849
intermediate stratum of r5BI	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.01139
Dental fluorosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.683
whole body	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.012525
laminin-10 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.745
structural constituent of tooth enamel	GO Molecular Function Annotations 2023	1.0	null
AC-28-RT00_0.01uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.414122
Rectum adenocarcinoma_READ_TCGA-G5-6572-02A-12R-1830-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
496100464_FWM_no dementia_no TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.59919
SKN	COSMIC Cell Line Gene Mutation Profiles	1.0	null
NCI-H2373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.41183
benign meningioma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.609666
CTCF_GM10248_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hsa-miR-1264	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
H3K4me1_A549_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
TUBA1B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.92201
IB-56-BR35_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.221168
NCI-H1573	COSMIC Cell Line Gene Mutation Profiles	1.0	null
disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042345
GTEX-U3ZN-1426-SM-3DB87	GTEx Tissue Sample Gene Expression Profiles	1.0	1.89398
GTEX-WHPG-2226-SM-3NMBO	GTEx Tissue Sample Gene Expression Profiles	1.0	0.929802
ovary	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-0.8328
Exoskeleton	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.041
GTEX-R45C-0926-SM-3GAD4	GTEx Tissue Sample Gene Expression Profiles	1.0	0.894403
HCC70	DepMap CRISPR Gene Dependency	1.0	2.77892
DD-26-RY82_0.01uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.491176
Prostate adenocarcinoma_PRAD_TCGA-J9-A52B-01A-11R-A26U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
lymphoid cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055448
MSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.1737
HD-68-CB31_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.200158
FOXH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.2041
BC-61-ZY95_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.427659
r9 (gustatory) part of solitary complex	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.26004
Cleft lip	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.216
Prostate adenocarcinoma_PRAD_TCGA-EJ-A8FN-01A-11R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
COLO-792	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Periosteum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.837
HEK-293H cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.648
GTEX-WFG7-0826-SM-3GIKU	GTEx Tissue Sample Gene Expression Profiles	1.0	1.10344
VAX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.3715
SNU-C1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.869583
GSE171837_0_v_2_bortezomib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
DLX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.2955
KMS-34	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.985874
Interpeduncular nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.01379
17555561-Table1	GeneSigDB Published Gene Signatures	1.0	null
FOXD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.3
mantle zone of r10BM	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.11748
periventricular stratum of r10Tr	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.3216
Liver hepatocellular carcinoma_LIHC_TCGA-DD-A11B-01A-11R-A131-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
POU4F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.3243
Midbrain raphe nuclei	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.14862
ECC10	CCLE Cell Line Gene Expression Profiles	-1.0	-1.72423
cellular_component	GO Cellular Component Annotations 2015	1.0	null
intermediate part of r8B	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.04366
U-2932	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Mutation Profiles	1.0	null
Msx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	15.1093
exonic	GeneRIF Biological Term Annotations	1.0	null
CCRF-CEM	COSMIC Cell Line Gene Mutation Profiles	1.0	null
S0-EE-XXLY_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.297718
FOXP3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.2979
posterior tegmental nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.28104
GSE211177,GSE211178_4_v_10_ets1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
SLR23	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.1361
r10 part of solitary complex	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.3201
Prostate adenocarcinoma_PRAD_TCGA-ZG-A8QX-01A-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
amel	GeneRIF Biological Term Annotations	1.0	null
PrefrontalCortex	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-0.83251
Kidney disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.326
mediodorsal nucleus of thalamus_15 yrs_M_12299	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.36186
Superior central nucleus raphe	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.2724
abnormal molar morphology	MGI Mouse Phenotype Associations 2023	1.0	null
Sarcoma_SARC_TCGA-IE-A4EK-01A-11R-A24X-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
disease of anatomical entity	DISEASES Curated Gene-Disease Association Evidence Scores	1.0	null
PMC9169777-pnas.2120787119.sd07.xlsx-Sheet1-Dataset_S7_Significantly_differentially_expressed_genes_between_G2_and_GATA3_WT_T-ALL_GATA3	Rummagene Transcription Factor Associations 2026	1.0	null
GSE141328_3_v_2_rock2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE226408_1_v_0_inpp4b_human	RummaGEO Gene Perturbation Signatures	-1.0	null
PAX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.7209
YY1	MotifMap Predicted Transcription Factor Targets	1.0	null
mantle zone of r10BL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.52209
MOLP2	CCLE Cell Line Gene Expression Profiles	1.0	2.42376
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-EK-A3GM-01A-11R-A213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
anterior (rostral) cingulate (medial prefrontal) cortex_9 pcw_M_12833	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.52232
Autosomal genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.926
KCL-22	COSMIC Cell Line Gene Mutation Profiles	1.0	null
AM38	DepMap CRISPR Gene Dependency	1.0	3.71543
laminin-3 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.335
FOXP1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.5742
Meis2	MotifMap Predicted Transcription Factor Targets	1.0	null
hsa-miR-3653	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
PDX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.4956
amygdaloid complex_12 pcw_F_12835	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.972588
macromolecular complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.183025
GTEX-XAJ8-1326-SM-47JYT	GTEx Tissue Sample Gene Expression Profiles	1.0	1.96657
Hypophosphatemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.21
hsa-miR-3148	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
Anodontia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.524
superficial stratum of r2BI	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.70471
hsa-miR-320e	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
lateral ganglionic eminence_8 pcw_M_13058	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.8306
Bone disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.737
catalytic complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.063536
Bone	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.073
r9 portion of vagal motor nucleus (postmigratory)	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.25732
striatum_13 pcw_M_12888	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.64571
DA-33-BM26_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	1.70421
SUPT6H	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.68747
GSE231799_3_v_5_nfkbie_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
methionine	GeneRIF Biological Term Annotations	1.0	null
Osteogenesis imperfecta type 7	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.022
Bladder Urothelial Carcinoma_BLCA_TCGA-G2-A2EL-01A-12R-A18C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ultrastructural	GeneRIF Biological Term Annotations	1.0	null
extracellular region part	GO Cellular Component Annotations 2015	1.0	null
mediodorsal nucleus of thalamus_21 pcw_M_12886	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.08091
autoimmune disease of gastrointestinal tract	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.65205
GTEX-R53T-1826-SM-3GIJX	GTEx Tissue Sample Gene Expression Profiles	1.0	0.983948
Teeth hard tissue disease	DISEASES Curated Gene-Disease Association Evidence Scores 2025	1.0	4.0
BATF::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.732
Inferior colliculus, external nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.52804
ALL-PO	COSMIC Cell Line Gene Mutation Profiles	1.0	null
organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.163865
r5 part of dorsal cochlear nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.11726
Tooth germ	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	3.56
Cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.154
lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059129
revealed	GeneRIF Biological Term Annotations	1.0	null
GTEX-XYKS-2426-SM-4AT43	GTEx Tissue Sample Gene Expression Profiles	1.0	1.25103
primary somatosensory cortex (area S1, areas 3,1,2)_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.9041
Human - Fetal Development - L2 - Placenta-Lymphoid cells	HuBMAP Azimuth Cell Type Annotations	1.0	null
POU3F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.7702
abnormal upper incisor morphology	MGI Mouse Phenotype Associations 2023	1.0	null
Foxl2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	31.5892
r8 part of basomedial reticular formation	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.28463
Hemolytic disease of the fetus	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.01
Liver hepatocellular carcinoma_LIHC_TCGA-ZS-A9CE-01A-11R-A37K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
primary somatosensory cortex (area S1, areas 3,1,2)_13 pcw_F_12834	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.861025
Perturb_15771_KO_Nrl_SRP219918	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	5.15723
COV413A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.16528
Orofacial cleft	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.31
NFE2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.0769
OCI-AML2 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.616
terete nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.01583
Lhx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.4229
Amelogenesis Imperfecta, Type IB	CTD Gene-Disease Associations	1.0	2.88009
Primary immunodeficiency disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.07
organism form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.33953
ZNF558	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	84.4794
CF-65-GU65_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.693536
FL83B cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.608
OCIMY5	CCLE Cell Line Gene CNV Profiles	-1.0	-1.45616
prostate cancer	GWASdb SNP-Phenotype Associations	1.0	0.730636
ZNF143_02_59	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	-1.0	-0.61667
Osteomalacia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.097
hsa-miR-765	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
NR1H4::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.4583
single	GeneRIF Biological Term Annotations	1.0	null
GTEX-REY6-0126-SM-48FDT	GTEx Tissue Sample Gene Expression Profiles	1.0	1.10136
abnormality of the genitourinary system	GWASdb SNP-Phenotype Associations	1.0	0.063902
peripheral blood cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.33965
abnormality of head or neck	HPO Gene-Disease Associations	1.0	null
KLF15_Deficiency_GDS2687_648_mouse_Liver	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
Perturb_1420_OE_Aatf_SRP257744	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	4.29286
retroreuniens nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.49201
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
Irf1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	42.4088
GTEX-WL46-0626-SM-3LK7R	GTEx Tissue Sample Gene Expression Profiles	1.0	1.02762
GSE168797_2_v_6_cannabidiol_human	RummaGEO Drug Perturbation Signatures	-1.0	null
DPRX	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.58998
PMC2886162__F5	PFOCR Pathway Figure Associations 2024	1.0	null
GSE223334_3_v_2_bcl11b_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GTEX-R53T-0426-SM-48FEM	GTEx Tissue Sample Gene Expression Profiles	1.0	0.879331
Osteoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.81
endoplasmic reticulum palmitoyltransferase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.826336
Dysostosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.018
GTEX-T6MN-0526-SM-32PMS	GTEx Tissue Sample Gene Expression Profiles	1.0	1.18062
Adrenocortical carcinoma_ACC_TCGA-OR-A5LK-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
dental enamel hypoplasia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	2.86989
Dentin Dysplasia	DisGeNET Gene-Disease Associations	1.0	null
NCI-H2452	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.925482
Meis1	MotifMap Predicted Transcription Factor Targets	1.0	null
autosomal recessive inheritance	HPO Gene-Disease Associations	1.0	null
USF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.80094
Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)	Reactome Pathways 2024	1.0	null
Dinoflagellate sulcus	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.632
Ankylosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.292
anatomical structure morphogenesis	GO Biological Process Annotations 2015	1.0	null
Nr2e1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	37.4251
GTEX-XQ3S-0626-SM-4BOOB	GTEx Tissue Sample Gene Expression Profiles	1.0	0.915144
NKX6-1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.8217
COLO-800	COSMIC Cell Line Gene Mutation Profiles	1.0	null
intermediate stratum of PcPL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.05964
CB-44-FA25_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.32205
H3K9me1_K562_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Epidermolysis bullosa	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.839
Tegmental reticular nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.02701
cytosol	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.383124
GTEX-XV7Q-0726-SM-4BRV6	GTEx Tissue Sample Gene Expression Profiles	1.0	1.18269
CF-02-MS93_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.209478
organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-H4-A2HO-01A-11R-A180-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
EZH2	ENCODE Transcription Factor Targets	1.0	null
Hoxd13	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	33.9409
NCI-H358	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10338
Junctional epidermolysis bullosa	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.065
striatum_15 yrs_M_12299	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.953262
abnormality of the teeth	HPO Gene-Disease Associations	1.0	null
EN1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.7787
reticular formation of JcPL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.05178
hsa-miR-644	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
Nance-Horan syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.358
dietary	GeneRIF Biological Term Annotations	1.0	null
Ovary	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	2.2603
Perturb_3994_KD_BCL11B_SRP097469	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.79133
primary somatosensory cortex (area S1, areas 3,1,2)_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.66473
disease by infectious agent	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.361502
QE-79-XO29_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	6.69177
posteroventral (inferior) parietal cortex_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.8825
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-7097-11A-01R-2016-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Cortical cytoskeleton	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.117
superficial stratum of the PBC	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.31877
out	GeneRIF Biological Term Annotations	1.0	null
Elf5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	46.6765
Brain disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.082
Pellicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.45
heart muscle	HPA Tissue Gene Expression Profiles	1.0	0.914429
Lung adenocarcinoma_LUAD_TCGA-MP-A4TH-01A-31R-A262-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE114992,GSE114993_0_v_10_irf5_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
all	HPO Gene-Disease Associations	1.0	null
posteromedial visual area	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.67082
primate	GeneRIF Biological Term Annotations	1.0	null
phenotypic abnormality	HPO Gene-Disease Associations	1.0	null
GTEX-SNMC-1426-SM-2XCFM	GTEx Tissue Sample Gene Expression Profiles	1.0	0.933003
GSE77108_0_v_7_saha_human	RummaGEO Drug Perturbation Signatures	1.0	null
TP63	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.8266
PMC11799530-12276_2024_1380_MOESM1_ESM.xlsx-DEG_KD_PC-Symbol_AR	Rummagene Transcription Factor Associations 2026	1.0	null
substantia nigra reticulata, isthmic part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.50632
CAL27	CCLE Cell Line Gene CNV Profiles	-1.0	-1.64315
GSE175787_4_v_2_rhoc_human	RummaGEO Gene Perturbation Signatures	1.0	null
Lung adenocarcinoma_LUAD_TCGA-35-5375-01A-01R-1628-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Rectum adenocarcinoma_READ_TCGA-G5-6572-01A-11R-1830-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
premature	GeneRIF Biological Term Annotations	1.0	null
adaptive	GeneRIF Biological Term Annotations	1.0	null
muscular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.35743
MEWO	COSMIC Cell Line Gene Mutation Profiles	1.0	null
hsa-miR-4753-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
GSE84678,GSE93902_1_v_2_bcl11b_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE212312_2_v_3_fbxw7_human	RummaGEO Gene Perturbation Signatures	-1.0	null
U251MG	CCLE Cell Line Gene CNV Profiles	1.0	2.40856
pronounced	GeneRIF Biological Term Annotations	1.0	null
GSE76425_0_v_3_lenalidomide_human	RummaGEO Drug Perturbation Signatures	1.0	null
NOTO	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.6185
GTEX-OHPL-1026-SM-3MJGI	GTEx Tissue Sample Gene Expression Profiles	1.0	0.847898
Epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.556
endocrine gland	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.026387
GA-88-CF36_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	3.51874
abnormal molar cusp morphology	MGI Mouse Phenotype Associations 2023	1.0	null
GTEX-X3Y1-0426-SM-3P5Z4	GTEx Tissue Sample Gene Expression Profiles	1.0	1.00702
hsa-miR-3122	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
ChIP_STAT3_19079543	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
HMBOX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.237
GTEX-U3ZH-0326-SM-3DB7A	GTEx Tissue Sample Gene Expression Profiles	1.0	1.03382
Mouth	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
BE-79-QU25_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	1.89471
Medial amygdalar nucleus, posteroventral part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.56741
HOS	COSMIC Cell Line Gene Mutation Profiles	1.0	null
intermediate stratum of r9BL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.18032
posterior (caudal) superior temporal cortex (area 22c)_15 yrs_M_12299	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.971973
Lhx8	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	14.2268
H3K4me1_CH12.LX_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
DETROIT 562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.69137
erythroid cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.167655
HCC1493	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.43772
SHMAC5	DepMap CRISPR Gene Dependency	1.0	2.24829
Ameloblastoma	DisGeNET Gene-Disease Associations	1.0	null
Liver	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-1.04173
region	GeneRIF Biological Term Annotations	1.0	null
Lung adenocarcinoma_LUAD_TCGA-78-7161-01A-11R-2039-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GFAP_OE_GDS1488_254_mouse_Olfactory bulb of 23 day old	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
RPMI8402	CCLE Cell Line Gene CNV Profiles	1.0	1.86938
RFX5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.7025
Gfi1b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	20.0227
r6 part of dorsal cochlear nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.59442
SCA1_Knock-in_GDS1756_234_mouse_Forebrain tissue - 12 weeks of age	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
endoplasmic reticulum part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.101894
amelogenesis imperfecta	DISEASES Curated Gene-Disease Association Evidence Scores	1.0	null
FOXD2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	64.6681
GSE63048_11_v_12_morc1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GTEX-SSA3-0326-SM-32QPS	GTEx Tissue Sample Gene Expression Profiles	1.0	2.50075
BA-02-FS63_0.01uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.673841
GTEX-UPK5-0226-SM-3GAEV	GTEx Tissue Sample Gene Expression Profiles	1.0	1.43866
Thap11	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	34.7273
r7 part of cochlear column	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.79961
mantle zone of r7Co	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.79961
Kidney renal clear cell carcinoma_KIRC_TCGA-CZ-5454-11A-01R-1503-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
KMS20	CCLE Cell Line Gene Expression Profiles	1.0	1.9584
GTEX-OIZI-0626-SM-2XCEH	GTEx Tissue Sample Gene Expression Profiles	1.0	1.47361
Dried cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.893
GSE137325_2_v_0_copanlisib_human	RummaGEO Drug Perturbation Signatures	1.0	null
GTEX-QV44-2026-SM-2S1RD	GTEx Tissue Sample Gene Expression Profiles	1.0	0.83496
Lung adenocarcinoma_LUAD_TCGA-75-6206-01A-11R-1755-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.057
GTEX-WFJO-0626-SM-4LVMC	GTEx Tissue Sample Gene Expression Profiles	1.0	0.843583
GTEX-X3Y1-0226-SM-3P5Z5	GTEx Tissue Sample Gene Expression Profiles	1.0	1.4479
MKN-45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.23047
Central nervous system benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.124
GTEX-U4B1-1526-SM-4DXSL	GTEx Tissue Sample Gene Expression Profiles	1.0	0.957768
HMCB	CCLE Cell Line Gene Expression Profiles	-1.0	-1.60211
Bladder Urothelial Carcinoma_BLCA_TCGA-GC-A3WC-11A-11R-A22U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.218914
KURAMOCHI	COSMIC Cell Line Gene Mutation Profiles	1.0	null
periventricular stratum of r5Co	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.11793
Suprageniculate nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.28182
DBH_KO_GDS4324_362_mouse_Embryonic heart  E10.5	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
hypertension	GWASdb SNP-Disease Associations	1.0	0.605962
NIH:OVCAR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10338
NR3C2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.4736
rara_21299862_mcf7_lof_human__gds4065	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	-1.0	-0.738615
serine c-palmitoyltransferase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.826336
L-363	COSMIC Cell Line Gene Mutation Profiles	1.0	null
klf5_18983969_embryonic_stem_cell_lof_mouse_gpl1261_gds3509	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	-1.0	-0.457488
MAFK_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
FOXS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.4652
r10 portion of the hypoglossal motor nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.47864
Rhox11	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.4058
hsa-miR-3646	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
DC-22-OP01_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.294411
medial part of r10B	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.12008
Mitotic actomyosin contractile ring	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.707
sp1k	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.161
Dlx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	13.8319
having	GeneRIF Biological Term Annotations	1.0	null
patient	GeneRIF Biological Term Annotations	1.0	null
CEBPG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.2018
urinary tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.578016
GSE109530,GSE109531_2_v_0_hdac3_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Gingival fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.612
Postsubiculum, layer 2	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.94788
dentin dysplasia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.26211
lateral part of the lateral habenular nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.15393
GTEX-RWS6-0926-SM-47JXE	GTEx Tissue Sample Gene Expression Profiles	1.0	0.848881
HCC1599	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-2.24277
blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.389289
GTEX-WOFM-1326-SM-3MJFR	GTEx Tissue Sample Gene Expression Profiles	1.0	0.980393
autosomaldominant	GeneRIF Biological Term Annotations	1.0	null
PC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.62318
MDA-MB-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.849474
Amelogenesis imperfecta type 4	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.25
23132-87	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GTEX-NPJ8-2226-SM-3TW8D	GTEx Tissue Sample Gene Expression Profiles	1.0	1.91433
NCI-H1299	COSMIC Cell Line Gene Mutation Profiles	1.0	null
HT55	DepMap CRISPR Gene Dependency	1.0	2.8027
Reproductive system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
TP73	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.3812
MYC-19829295-ESCS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
COLO684	CCLE Cell Line Gene Expression Profiles	1.0	1.79135
kidney disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.045728
NR2F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	63.9076
Medial amygdalar nucleus, anteroventral part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.75507
OV7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.41183
Disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.363
SW1573	CCLE Cell Line Gene CNV Profiles	-1.0	-1.4517
GSE192663_3_v_5_acly_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
MC3T3-E1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.955
GTEX-U8XE-0126-SM-4E3I3	GTEx Tissue Sample Gene Expression Profiles	1.0	0.827462
PMC11496110-42255_2024_1140_MOESM3_ESM.xlsx-ST18_Gene_view-Unnamed_1_ST18	Rummagene Transcription Factor Associations 2026	1.0	null
SW684	COSMIC Cell Line Gene Mutation Profiles	1.0	null
STAT3-19079543-MESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
FOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.1746
neuropathy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.05859
result	GeneRIF Biological Term Annotations	1.0	null
craniofacial phenotype	MPO Gene-Phenotype Associations	1.0	null
Hypoglossal nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.94299
NCI-H1693	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.971925
bone	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.545739
membrane part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.05051
Postsubiculum, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	3.40206
molaris	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.66307
copies	GeneRIF Biological Term Annotations	1.0	null
IKZF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.3905
SCC-25	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.23047
GSE160817_5_v_9_slamf6_human	RummaGEO Gene Perturbation Signatures	-1.0	null
abnormal enamel mineralization	MGI Mouse Phenotype Associations 2023	1.0	null
Copula pyramidis, granular layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.01201
H3K27me3_G1E-ER4_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MDA-MB-157	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Cyst	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.406
HOXB5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.5504
496100355_HIP_no dementia_no TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.60656
mantle zone of r10BI	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.56042
positive regulation of tooth mineralization	GO Biological Process Annotations 2023	1.0	null
DMRTC2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	5.10364
FXR	MotifMap Predicted Transcription Factor Targets	1.0	null
Glaucoma_Retina_GSE3554	GEO Signatures of Differentially Expressed Genes for Diseases	1.0	1.97972
FOSL1::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.191
POU6F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.5279
GTEX-NPJ8-2126-SM-3MJGK	GTEx Tissue Sample Gene Expression Profiles	1.0	0.956845
GTEX-P4PQ-1026-SM-3NMCN	GTEx Tissue Sample Gene Expression Profiles	1.0	1.19806
intermediate stratum of ITTh	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.06936
abnormal incisor morphology	MPO Gene-Phenotype Associations	1.0	null
epulis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.660404
HCC1419	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.853316
NKX6-2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.4183
AR-27623747-22RV1-MOUSE-PROSTATE-CARCINOMA	ChEA Transcription Factor Targets 2022	1.0	null
hsa-miR-548ac	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
GC-04-UF36_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	10.2768
Subparafascicular area	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.25477
dorsolateral prefrontal cortex_12 pcw_F_12835	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.15588
GSE125862_2_v_1_dexamethasone_human	RummaGEO Drug Perturbation Signatures	1.0	null
CB-16-SY72_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	3.31273
NC-73-QU79_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.202991
LY2	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.627329
hsa-miR-4510	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
Hmgn1_KO_GDS5010_406_mouse_liver	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
Retrosplenial area, dorsal part, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.0962
NQO2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.80167
spleen	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	1.32925
abnormal craniofacial development	MPO Gene-Phenotype Associations	1.0	null
strabismus	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.32009
Geleophysic dysplasia 3	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.344
Columnar cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.372
IRF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.2226
NCI-H2198	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.869583
NCI-H2171	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10793
ZNF24	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.6901
cytoplasmic part	LOCATE Predicted Protein Localization Annotations	1.0	null
FOSL2::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.4996
DF-80-BU28_0.01uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.26252
IRF2	JASPAR Predicted Transcription Factor Targets	1.0	null
bud	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.139773
decreased circulating transferrin level	MGI Mouse Phenotype Associations 2023	1.0	null
intermediate stratum of r10BI	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.34538
GTEX-PX3G-1526-SM-48U11	GTEx Tissue Sample Gene Expression Profiles	1.0	0.901796
YY1	JASPAR Predicted Transcription Factor Targets	1.0	null
MEIS3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.9792
hsa-miR-4709-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
decreased bone mineral content	MGI Mouse Phenotype Associations 2023	1.0	null
Osteogenesis imperfecta type 3	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.494
H2AFZ_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
plant reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.073951
position	GeneRIF Biological Term Annotations	1.0	null
c-Myc_OE_GDS3321_157_mouse_lung adenocarcinomas alveolar epithelia	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
GTEX-WHPG-1026-SM-3NMBA	GTEx Tissue Sample Gene Expression Profiles	1.0	0.892341
SJSA1	CCLE Cell Line Gene Expression Profiles	-1.0	-1.56826
Eye degenerative disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.032
KA-78-TY66_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.433279
CAKI1	DepMap CRISPR Gene Dependency	1.0	2.73692
cytoskeleton	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.232744
GTEX-SNOS-1126-SM-4DM67	GTEx Tissue Sample Gene Expression Profiles	1.0	1.56175
BC-09-XQ45_0.01uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.220801
GNA11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.7578
Bladder Urothelial Carcinoma_BLCA_TCGA-CU-A0YR-11A-13R-A10U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Carbohydrate metabolic disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.105
GTEX-O5YW-0326-SM-2I5EI	GTEx Tissue Sample Gene Expression Profiles	1.0	0.867765
mandible	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.745451
GTEX-POMQ-0826-SM-3P61H	GTEx Tissue Sample Gene Expression Profiles	1.0	0.869164
layer 1 of PaS	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.1186
Retinal degeneration	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.017
OCILY3	CCLE Cell Line Gene Expression Profiles	1.0	1.49536
Head and Neck squamous cell carcinoma_HNSC_TCGA-CQ-6228-01A-11R-1915-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HC-74-HM63_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	2.91932
increased mean corpuscular volume	MGI Mouse Phenotype Associations 2023	1.0	null
KYM1	CCLE Cell Line Gene Expression Profiles	1.0	3.40793
lysp100-associated nuclear domain	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.266774
Ovary	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	4.466
Brain - Amygdala	GTEx Tissue Gene Expression Profiles 2023	1.0	3.51334
YB-27-PO08_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.430417
Cell leading edge	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.518
cellular_component	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
U-2 OS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.52449
Acute Myeloid Leukemia_LAML_TCGA-AB-2934-03A-01T-0740-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RXRA-24833708-LIVER-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
GTEX-VJYA-0926-SM-4KL1N	GTEx Tissue Sample Gene Expression Profiles	1.0	1.0022
Periodontitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.762
BEN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.67993
neuro2a	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-0.832978
preoptic	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-1.34393
Disease of anatomical entity	DISEASES Curated Gene-Disease Association Evidence Scores 2025	1.0	4.0
HCC366	CCLE Cell Line Gene CNV Profiles	1.0	1.33023
Entorhinal area, medial part, dorsal zone, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.09551
DBH_KO_GSE33906_53_mouse_heart (E10.5)	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
GTEX-XQ3S-0426-SM-4BOOA	GTEx Tissue Sample Gene Expression Profiles	1.0	0.966872
L363	CCLE Cell Line Gene Expression Profiles	1.0	1.52365
LYSET	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.16806
MOLP8	CCLE Cell Line Gene Expression Profiles	1.0	1.55565
dental	GeneRIF Biological Term Annotations	1.0	null
SNUC5	DepMap CRISPR Gene Dependency	1.0	2.33473
Terminal web	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.171
MAP6D1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.72398
Pancreatic adenocarcinoma_PAAD_TCGA-IB-AAUM-01A-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
LCLC97TM1	CCLE Cell Line Gene Expression Profiles	-1.0	-2.69508
GTEX-U3ZN-2026-SM-4DXUC	GTEx Tissue Sample Gene Expression Profiles	1.0	0.840727
Scarlet fever	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.127
mesoderm	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.372369
DB-56-XL71_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.261274
HT55	Achilles Cell Line Gene Essentiality Profiles	1.0	1.86953
posteroventral (inferior) parietal cortex_21 pcw_F_12365	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.900164
Head and Neck squamous cell carcinoma_HNSC_TCGA-WA-A7GZ-11A-11R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
anterior pretectal nucleus, dorsal core part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.05897
autosomal genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.05112
GTEX-V1D1-2126-SM-4JBH4	GTEx Tissue Sample Gene Expression Profiles	1.0	1.04174
GSE138938_1_v_3_foxp2_human	RummaGEO Gene Perturbation Signatures	1.0	null
Nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.467
cancer	GWASdb SNP-Disease Associations	1.0	0.043007
phenotypic abnormality	GWASdb SNP-Phenotype Associations	1.0	0.030619
embryo	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.51285
FZD3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.87386
H3K4me2_endothelial cell of umbilical vein_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
DorsalRootGanglion	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	1.07265
HOXB6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.6852
FOXH1-21741376-EPCS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
GTEX-SE5C-0626-SM-2XCDV	GTEx Tissue Sample Gene Expression Profiles	1.0	1.55651
cardiovascular system disease	GWASdb SNP-Disease Associations	1.0	0.052454
hsa-miR-3662	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
ruled	GeneRIF Biological Term Annotations	1.0	null
SJSA1	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.41568
SW 1573	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04648
enamel organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	2.74593
deciduous	GeneRIF Biological Term Annotations	1.0	null
GSE218819_2_v_1_kdm5b_human	RummaGEO Gene Perturbation Signatures	-1.0	null
TGIF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.6533
FOXB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	67.755
Chondroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.633
PANC 04.03	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.964927
CAL 27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.51591
GSE109530,GSE109531_2_v_3_hdac3_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Eye disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.108
Plant crown	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.767
Primary somatosensory area, trunk, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.95886
primary somatosensory cortex (area S1, areas 3,1,2)_13 pcw_M_12820	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.00686
GTEX-XPVG-0826-SM-4B654	GTEx Tissue Sample Gene Expression Profiles	1.0	0.851777
abnormal incisor color	MGI Mouse Phenotype Associations 2023	1.0	null
PCDH12_Deficiency_GDS3415_577_mouse_Embryonic placentas (12.5 day)	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
cell cortex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.187333
layer 2 of LOT	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.19697
mediodorsal nucleus of thalamus_23 yrs_M_12300	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.902574
GTEX-PW2O-1426-SM-48TCD	GTEx Tissue Sample Gene Expression Profiles	1.0	1.21647
Otitis media	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.069
intracellular membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.219265
NCI-H187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.52449
GSE148269,GSE148273_0_v_1_arid4b_human	RummaGEO Gene Perturbation Signatures	1.0	null
GTEX-P4QS-0326-SM-2I3EU	GTEx Tissue Sample Gene Expression Profiles	1.0	0.942359
G402	DepMap CRISPR Gene Dependency	1.0	2.47951
nuclear body	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.088419
GTEX-OXRO-1726-SM-3LK6C	GTEx Tissue Sample Gene Expression Profiles	1.0	0.900584
Uropod	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.091
KLKB1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.21075
heart muscle	HPA Tissue Protein Expression Profiles	1.0	0.738023
ovary	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	1.53602
Gingival disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.952
UE-13-LK75_0.01uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.2218
Ebolavirus(EBOV)_1day_PBMCs_17725815_GSE8317	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.81155
YH13	CCLE Cell Line Gene CNV Profiles	-1.0	-1.43783
hsa-miR-1207-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
nuclear part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041794
Yellow-Brown Discoloration Of The Teeth	DisGeNET Gene-Phenotype Associations	1.0	null
gastrointestinal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.51809
CB-16-SY72_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.231678
RORA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.7422
UOK101	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.84572
BE-38-UW72_0.01uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	1.0111
Dental Caries	DisGeNET Gene-Disease Associations	1.0	null
Pulpitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.341
Nucleus prepositus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.31285
MZ7-MEL	COSMIC Cell Line Gene Mutation Profiles	1.0	null
ZB-72-PE17_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.445096
DD-61-DY35_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.486365
MAFG::NFE2L1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.6326
OCUB-M	COSMIC Cell Line Gene Mutation Profiles	1.0	null
hsa-miR-3171	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
MC-82-RG58_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.262754
CDX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.2774
Retrosplenial area, lateral agranular part, layer 6b	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.26762
POU1F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	49.945
Sarcoma_SARC_TCGA-K1-A42X-01A-11R-A24X-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
QA-25-HL62_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.418126
AB-17-DF74_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.464898
496100459_PCx_no dementia_no TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.95029
Perturb_5910_KD_GATAD2A_SRP271175	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	11.6724
DA-63-NP63_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.445919
skin	HPA Tissue Gene Expression Profiles	-1.0	-1.03532
Carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.037
cortical cytoskeleton	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.255834
epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.2586
NCI-H28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.971925
PMC10661700-41525_2023_383_MOESM2_ESM.xlsx-Supp_Table8_gnomAD_AFR_GCR-SYMBOL_NR3C1	Rummagene Transcription Factor Associations 2026	1.0	null
abnormality of dental enamel	HPO Gene-Disease Associations	1.0	null
GTEX-WHWD-0426-SM-3LK83	GTEx Tissue Sample Gene Expression Profiles	1.0	1.37843
autosomalrecessive	GeneRIF Biological Term Annotations	1.0	null
CF-46-PR45_0.01uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.250976
superficial stratum of r1BL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.11793
skeletal muscle	HPA Tissue Protein Expression Profiles	1.0	0.738023
Lip disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.152
Lingula (I), molecular layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.11492
Brain Lower Grade Glioma_LGG_TCGA-E1-A7Z3-01A-11R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.37316
Liver hepatocellular carcinoma_LIHC_TCGA-KR-A7K0-01A-12R-A33R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Hypophosphatasia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.508
HOXC8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.6729
MM1S	CCLE Cell Line Gene Expression Profiles	1.0	1.43109
hematopoietic stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.06423
hsa-miR-569	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
RT11284	CCLE Cell Line Gene CNV Profiles	-1.0	-1.48155
SUPHD1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.82835
G361	CCLE Cell Line Gene CNV Profiles	1.0	1.32884
Neural crest	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.483
Amelogenesis imperfecta - hypoplastic autosomal dominant - local	ClinVar Gene-Phenotype Associations 2025	1.0	null
GTEX-QEG4-0626-SM-2S1OY	GTEx Tissue Sample Gene Expression Profiles	1.0	2.16013
mandibular incisor	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.35086
stellate reticulum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.436438
GSE147662_0_v_4_nicotinamide_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
intermediate part of r10B	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.56208
496100419_TCx_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	7.29077
Heart	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-1.33806
496100420_PCx_probable Alzheimer's disease_no TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	6.65663
protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.045821
THOC2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.11415
bone cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.074341
ae1	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.607
central nervous system organ benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.476772
superficial stratum of r8BM	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.82296
hsa-miR-193a-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
mantle zone of AOD	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.12771
Oculodentodigital dysplasia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.325
body wall	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.650966
PMC7450072-41598_2020_71096_MOESM1_ESM.xlsx-Table1_SS_vs_AA_RBC_lys-Gene_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
HS766T	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GSE84678,GSE93902_3_v_2_bcl11b_human	RummaGEO Gene Perturbation Signatures	-1.0	null
critical	GeneRIF Biological Term Annotations	1.0	null
Perturb_5916_KD_HNRNPK_SRP271175	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	10.9479
GSE126463_6_v_2_pomalidomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
SNU-C5	COSMIC Cell Line Gene Mutation Profiles	1.0	null
TGIF2LY	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.9989
496100491_HIP_no dementia_no TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.47307
Molar Incisor Hypomineralization	DisGeNET Gene-Disease Associations	1.0	null
Tear gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.797
autoimmune polyendocrine syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.188632
abnormal enamel organ morphology	MGI Mouse Phenotype Associations 2023	1.0	null
ZNF680	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.4089
GSE235066_4_v_0_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
Vesiculobullous skin disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.838
Perturb_5914_KD_HMGA1_SRP271175	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	6.27548
GSE109530,GSE109531_1_v_0_hdac3_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PK-45P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09778
POU2F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.5007
Brain Lower Grade Glioma_LGG_TCGA-S9-A6WL-01A-21R-A33Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
KMS12BM	Achilles Cell Line Gene Essentiality Profiles	1.0	1.34841
intracellular	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.575495
PRRX2	JASPAR Predicted Transcription Factor Targets	1.0	null
erythrocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.177039
hsa-miR-4802-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
Lung adenocarcinoma_LUAD_TCGA-97-8171-01A-11R-2287-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Anteromedial visual area, layer 6b	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.38276
IGROV-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
streptococcus	GeneRIF Biological Term Annotations	1.0	null
hsa-miR-1913	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
Pancreatic adenocarcinoma_PAAD_TCGA-S4-A8RM-01A-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Adamantinous craniopharyngioma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.563
cell part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.583012
decreased hematocrit	MGI Mouse Phenotype Associations 2023	1.0	null
vascular disease	GWASdb SNP-Disease Associations	1.0	0.072478
GTEX-TKQ1-0926-SM-4DXU2	GTEx Tissue Sample Gene Expression Profiles	1.0	0.882486
STAT3	ChEA Transcription Factor Targets	1.0	null
intermediate part of r9B	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.48498
real	GeneRIF Biological Term Annotations	1.0	null
posterior triangular nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.2705
PMC9999213-mmc1.xlsx-DEGs_vs_2D-DEA_NB_MSC_PSc_vs_NB_2D_MSC	Rummagene Transcription Factor Associations 2026	1.0	null
mantle zone of THyB-I	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.02701
HEC1B	CCLE Cell Line Gene CNV Profiles	-1.0	-1.35104
496100414_TCx_probable Alzheimer's disease_no TBI_87_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.01393
imperfecta	GeneRIF Biological Term Annotations	1.0	null
Z chromosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.823
Lung adenocarcinoma_LUAD_TCGA-49-4501-01A-01R-1206-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
496100407_FWM_probable Alzheimer's disease_no TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.16355
Intracranial meningioma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.091
JDP2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.7653
GTEX-OXRL-2126-SM-3NM98	GTEx Tissue Sample Gene Expression Profiles	1.0	1.44044
Acute Myeloid Leukemia_LAML_TCGA-AB-2918-03A-01T-0740-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
JHOM2B	CCLE Cell Line Gene Expression Profiles	-1.0	-1.59833
Lung adenocarcinoma_LUAD_TCGA-NJ-A55O-01A-11R-A262-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Hair follicle bulge	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.74
peripheral blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.16302
Periodontal ligament	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.053
BICR18	CCLE Cell Line Gene Expression Profiles	-1.0	-1.54541
NCIH28	CCLE Cell Line Gene CNV Profiles	-1.0	-1.50505
autosomal	GeneRIF Biological Term Annotations	1.0	null
GTEX-XUJ4-0004-SM-4BOQE	GTEx Tissue Sample Gene Expression Profiles	1.0	1.01809
GSE183994_3_v_0_scml2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GTEX-Q2AI-1226-SM-48U14	GTEx Tissue Sample Gene Expression Profiles	1.0	0.891207
Hereditary Disturbances In Tooth Structure, Not Elsewhere Classified In Icd10Cm	DisGeNET Gene-Disease Associations	1.0	null
GC-04-UF36_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	6.3233
temporal neocortex_9 pcw_M_12833	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.9971
NFYB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.4748
OUMS23	CCLE Cell Line Gene Expression Profiles	-1.0	-2.08991
hepatobiliary disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.826178
Diabetes mellitus	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.073
Gingivitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.586
LMX1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.539
GTEX-U3ZG-0326-SM-47JXN	GTEx Tissue Sample Gene Expression Profiles	1.0	1.33095
Saliva	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.956
HCC1428	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04648
NALM-6	COSMIC Cell Line Gene Mutation Profiles	1.0	null
SUM 149PT	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02879
MSTO-211H	COSMIC Cell Line Gene Mutation Profiles	1.0	null
where	GeneRIF Biological Term Annotations	1.0	null
dental malocclusion	HPO Gene-Disease Associations	1.0	null
Bone development disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.774
germ layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.8087
Bone benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.206
dna	GeneRIF Biological Term Annotations	1.0	null
disease	DISEASES Curated Gene-Disease Association Evidence Scores	1.0	null
MSC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.9085
Mouth	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	3.083
r10 part of vagal motor nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.5287
Bladder Urothelial Carcinoma_BLCA_TCGA-HQ-A2OF-01A-11R-A26T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SUDHL6	CCLE Cell Line Gene CNV Profiles	-1.0	-1.93297
UBE2V2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.34589
Cirrhosis	DisGeNET Gene-Disease Associations	1.0	null
increased alkaline phosphatase activity	MGI Mouse Phenotype Associations 2023	1.0	null
Secondary motor area, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.08993
Osteochondrodysplasia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.776
GC-15-JX22_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.216119
hsa-miR-193b	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
Stratum intermedium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.704
GTEX-O5YT-0326-SM-32PKA	GTEx Tissue Sample Gene Expression Profiles	1.0	0.955805
p002	GeneRIF Biological Term Annotations	1.0	null
disease	GWASdb SNP-Disease Associations	1.0	0.027919
amygdaloid complex_26 pcw_F_12949	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.06978
NFE2L2_KO_GDS514_699_mouse_liver	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
vorinostat_homo sapiens_gpl570_gse34880	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
Middle ear disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.05
E2F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	52.2019
intracellular organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.165697
GTEX-PWCY-0526-SM-2I3ER	GTEx Tissue Sample Gene Expression Profiles	1.0	1.12799
GATA3-22897851-JUKARTE6-1-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
ISX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.6726
MRK-NU-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Posterior limiting nucleus of the thalamus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.28915
HOXB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.0204
P12-ICHIKAWA	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GTEX-S3XE-0426-SM-3K2AC	GTEx Tissue Sample Gene Expression Profiles	1.0	1.29481
TC-91-SL57_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.293879
GTEX-RUSQ-2126-SM-47JXK	GTEx Tissue Sample Gene Expression Profiles	1.0	0.844406
TULP4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.00643
layer 1 of PrS	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.32957
Copula pyramidis	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.06607
abnormal craniofacial morphology	MPO Gene-Phenotype Associations	1.0	null
GSE77108_4_v_9_saha_human	RummaGEO Drug Perturbation Signatures	-1.0	null
cSARS Bat SRBD_54Hour_None_GSE37827	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.25664
X-linked dominant hypophosphatemic rickets	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.083
AA-81-IB40_0.01uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.205222
Temporomandibular joint	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.685
amelogenesis	GO Biological Process Annotations 2015	1.0	null
Pulp degeneration	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.378
resulting	GeneRIF Biological Term Annotations	1.0	null
VCAP	CCLE Cell Line Gene CNV Profiles	1.0	1.98
Prostate adenocarcinoma_PRAD_TCGA-EJ-7123-11A-01R-1965-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
nucleoplasm part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.04744
SKRC20	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.2592
NDUFA1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.01001
time	GeneRIF Biological Term Annotations	1.0	null
generating	GeneRIF Biological Term Annotations	1.0	null
GSE175787_8_v_2_rhoc_human	RummaGEO Gene Perturbation Signatures	1.0	null
STAT1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.6104
GTEX-P4PQ-0326-SM-2HMJ8	GTEx Tissue Sample Gene Expression Profiles	1.0	1.66545
PA-TU-8988S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.869583
hsa-miR-520d-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
FB-66-UU47_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	3.16124
ocular motility disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.157929
HCT-15	COSMIC Cell Line Gene Mutation Profiles	1.0	null
abnormality of dental structure	HPO Gene-Disease Associations	1.0	null
GSE244233_1_v_0_quercetin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
hybridoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.170791
previously	GeneRIF Biological Term Annotations	1.0	null
GTEX-RWS6-0326-SM-2XCAP	GTEx Tissue Sample Gene Expression Profiles	1.0	0.8518
GTEX-WH7G-0002-SM-4LVN9	GTEx Tissue Sample Gene Expression Profiles	1.0	1.18165
type	GeneRIF Biological Term Annotations	1.0	null
GSE142210_11_v_7_panobinostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
reduced enamel thickness	MPO Gene-Phenotype Associations	1.0	null
Cellular bud	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.638
hypersensitivity reaction disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.0711
POU3F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	73.5013
CAL51	Achilles Cell Line Gene Essentiality Profiles	1.0	2.16457
excretory gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.546136
orbital frontal cortex_37 yrs_M_12303	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.12845
Bladder Urothelial Carcinoma_BLCA_TCGA-BT-A20R-11A-11R-A16R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
EZH2_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
endothelial progenitor cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.451428
Nucleus of the solitary tract, gelatinous part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.06533
HOXA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.6332
r9 basal plate	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.30562
Ectodermal dysplasia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.7
PK59	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33179
Head and Neck squamous cell carcinoma_HNSC_TCGA-CN-6017-01A-11R-1686-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
endocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.56603
SCH	COSMIC Cell Line Gene Mutation Profiles	1.0	null
caudal interpeduncular nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.03648
GTEX-OXRK-0826-SM-2HMK7	GTEx Tissue Sample Gene Expression Profiles	1.0	2.18706
associations	GeneRIF Biological Term Annotations	1.0	null
Body wall	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.476
HCC56	DepMap CRISPR Gene Dependency	1.0	3.60347
Bullous skin disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.612
PMC10335677-pbio.3002161.s009.xls-MLL_siRNA_DEGs-Ensembl_ID_KMT2A	Rummagene Transcription Factor Associations 2026	1.0	null
NCI-H1417	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-BT-A0YX-01A-11R-A10U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
abnormal enamel rod pattern	MGI Mouse Phenotype Associations 2023	1.0	null
Hnf1a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	32.5901
striatum_23 yrs_M_12300	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.84275
496100612_HIP_no dementia_no TBI_95-99_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.35425
Cell cortex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.045
PMC2886162__F5	PFOCR Pathway Figure Associations 2023	1.0	null
GTEX-W5X1-0826-SM-3GILN	GTEx Tissue Sample Gene Expression Profiles	1.0	0.867198
Mesothelioma_MESO_TCGA-LK-A4O4-01A-11R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
abnormal tooth morphology	MGI Mouse Phenotype Associations 2023	1.0	null
TCF7L2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.521
Plasma cell_Kidney_Human	CellMarker Gene-Cell Type Associations	1.0	null
Connective tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.734
KGN	COSMIC Cell Line Gene Mutation Profiles	1.0	null
retinal degeneration	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.054975
Craniopharyngioma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.346
hsa-miR-548d-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
klk4	GeneRIF Biological Term Annotations	1.0	null
mRNA_SOX2_17515932	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	-1.0	null
base	GeneRIF Biological Term Annotations	1.0	null
GSE143692_0_v_1_trim8_human	RummaGEO Gene Perturbation Signatures	1.0	null
Renal tubular acidosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.703
PMC10809641-DataSheet3.pdf-115-EMX2_EMX2	Rummagene Transcription Factor Associations 2026	1.0	null
GTEX-OHPL-0326-SM-33HC8	GTEx Tissue Sample Gene Expression Profiles	1.0	1.31713
Perturb_13518_KD_ILF2_SRP077068	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	1.91982
Perihypoglossal nuclei	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.35868
Large intestine	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
PF-382	COSMIC Cell Line Gene Mutation Profiles	1.0	null
abnormality of the face	HPO Gene-Disease Associations	1.0	null
Foxo3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	21.865
Stat2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	69.3082
EFM-19	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.00752
iii	GeneRIF Biological Term Annotations	1.0	null
SCMCRM2	DepMap CRISPR Gene Dependency	1.0	2.97981
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-GS-A9TT-01A-11R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GTEX-QDVN-0326-SM-2I3FS	GTEx Tissue Sample Gene Expression Profiles	1.0	0.830102
Dental enamel hypoplasia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	3.405
GSE128634,GSE128636_4_v_3_foxo1_human	RummaGEO Gene Perturbation Signatures	1.0	null
PMC12211354-12915_2025_2224_MOESM6_ESM.xlsx-Sheet1-Sheet1_The_source_list_of_zebrafish_Npas4b_targets_from_human_NPAS4_targets_in_CHEA3_database_NPAS4	Rummagene Transcription Factor Associations 2026	1.0	null
BACH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.2256
hsa-miR-147	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
delayed tooth eruption	MGI Mouse Phenotype Associations 2023	1.0	null
intermediate stratum of Ist	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.41483
decreased body length	MGI Mouse Phenotype Associations 2023	1.0	null
MEIOC	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.52313
NCI-H1435	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.978751
OE-31-YC41_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	3.64673
p1 part of the substantia nigra reticulata	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.10941
U266B1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.06211
AE-39-DG66_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.421337
Acute Myeloid Leukemia_LAML_TCGA-AB-2933-03A-01T-0734-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hsa-miR-3074-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
urinary system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.586427
H3K4me1_A549_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
SK-LMS-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
dental enamel hypoplasia	DISEASES Curated Gene-Disease Association Evidence Scores	1.0	null
OVK18	CCLE Cell Line Gene Expression Profiles	-1.0	-1.53746
CHK2_KD_GSE54268_667_human_MCF-10A	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
GTEX-WEY5-0426-SM-3GIKT	GTEx Tissue Sample Gene Expression Profiles	1.0	1.25898
FA-63-WI26_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.283346
ZNF136	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.2156
U178	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.54998
connective tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.299601
Sarcoma_SARC_TCGA-IS-A3K6-01A-11R-A21T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cyst	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.684327
GTEX-UJHI-0426-SM-3DB8Y	GTEx Tissue Sample Gene Expression Profiles	1.0	1.23036
mineral metabolism disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.07361
GTEX-PLZ5-0626-SM-2I5F8	GTEx Tissue Sample Gene Expression Profiles	1.0	1.00168
RCOR1-19997604-NEURONS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
prostate_4c	HPA Tissue Sample Gene Expression Profiles	-1.0	-0.93142
GTEX-P78B-1626-SM-2S1O1	GTEx Tissue Sample Gene Expression Profiles	1.0	1.27593
HCC2998	COSMIC Cell Line Gene Mutation Profiles	1.0	null
RCC10RGB	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GTEX-XPT6-2026-SM-4B64V	GTEx Tissue Sample Gene Expression Profiles	1.0	0.954297
amygdaloid complex_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.53534
families	GeneRIF Biological Term Annotations	1.0	null
Lung adenocarcinoma_LUAD_TCGA-55-6984-01A-11R-1949-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC9724253-12920_2022_1407_MOESM1_ESM.pdf-144-ELK4_ELK4	Rummagene Transcription Factor Associations 2026	1.0	null
GSE146687_2_v_5_eribulin_human	RummaGEO Drug Perturbation Signatures	1.0	null
FE-73-PS05_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.305817
TRPS1_Mutation_GDS4493_594_mouse_Whisker pads	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
Mineral metabolism disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.241
A673	CCLE Cell Line Gene CNV Profiles	-1.0	-1.93114
Perturb_4375_KD_CREBBP_SRP072506	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	6.96411
kidney_a	HPA Tissue Sample Gene Expression Profiles	1.0	1.11633
codon	GeneRIF Biological Term Annotations	1.0	null
Phosphorus metabolism disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.092
DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.8766
Sarcoma_SARC_TCGA-WK-A8XX-01A-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Gigantocellular reticular nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.38101
hydrometra	MGI Mouse Phenotype Associations 2023	1.0	null
Rhomboid nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.60415
Hair follicle inner root sheath	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.601
plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052456
HE-29-OW54_0.01uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.230318
Mantle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.08
GTEX-Q734-2026-SM-3GADA	GTEx Tissue Sample Gene Expression Profiles	1.0	1.48404
PMC5444746-oncotarget-08-30328-s002.xlsx-SI02_Gene_symbols-1912_ChIP-Seq_H3K9me1_2_demethylation_and_ChIP-Seq_AR_AR	Rummagene Transcription Factor Associations 2026	1.0	null
liver cirrhosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.353027
H4	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Gingiva	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.974
Cytoskeleton of presynaptic active zone	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.212
GMEB2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.9952
GSE208096_1_v_0_progesterone_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
placenta_3a	HPA Tissue Sample Gene Expression Profiles	-1.0	-0.93142
mandibular cyst	MGI Mouse Phenotype Associations 2023	1.0	null
HDMYZ	CCLE Cell Line Gene CNV Profiles	-1.0	-2.06831
seminal vesicle	HPA Tissue Protein Expression Profiles	1.0	1.3651
Lung adenocarcinoma_LUAD_TCGA-93-7347-01A-11R-2187-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
female reproductive system	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	1.53602
kidney	GTEx Tissue Gene Expression Profiles	1.0	1.40173
GTEX-T2IS-2626-SM-32QPP	GTEx Tissue Sample Gene Expression Profiles	1.0	1.31929
Liver hepatocellular carcinoma_LIHC_TCGA-ZP-A9CV-01A-11R-A38B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GATA1::TAL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.2153
bonemarrow_5a	HPA Tissue Sample Gene Expression Profiles	-1.0	-0.93142
GTEX-POMQ-0326-SM-2I5FO	GTEx Tissue Sample Gene Expression Profiles	1.0	1.34854
Enamel knot	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.106
GTEX-XYKS-1226-SM-4BRVI	GTEx Tissue Sample Gene Expression Profiles	1.0	1.12332
retina	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-0.962915
Buccal epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.023
GE-84-VZ24_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.306522
r1 part of principal trigeminal sensory nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.05568
BARX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.1728
LBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.3625
Enamel caries	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.249
r10 part of nucleus gracilis	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.86954
autoimmune hepatitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.9797
RNA helicase p68_KD_GDS2152_626_mouse_skeletal muscle cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
mih	GeneRIF Biological Term Annotations	1.0	null
Post-translational protein phosphorylation	Reactome Pathways 2024	1.0	null
Gastrointestinal stromal tumor_Gastric Tissue_GSE15966	GEO Signatures of Differentially Expressed Genes for Diseases	-1.0	-1.8235
fruit	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.079681
YMB1	CCLE Cell Line Gene Expression Profiles	-1.0	-2.2617
Cell type benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.258
germ cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.85482
ISTMEL1	DepMap CRISPR Gene Dependency	1.0	2.31384
heterozygous	GeneRIF Biological Term Annotations	1.0	null
Inherited metabolic disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.203
AB-33-EM56_0.01uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.300636
Parabrachial nucleus, lateral division, external lateral part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.38208
GTEX-PX3G-1626-SM-2S1PT	GTEx Tissue Sample Gene Expression Profiles	1.0	0.896363
PMC10425715-Supplementary_material-Suppl.3-s3.docx-2-DLX3_DLX3	Rummagene Transcription Factor Associations 2026	1.0	null
AB-18-YN11_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.361825
Head and Neck squamous cell carcinoma_HNSC_TCGA-KU-A6H8-01A-21R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hypomineralization of enamel	HPO Gene-Disease Associations	1.0	null
hsa-miR-3688-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
Cementum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.437
gingival overgrowth	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.593674
H3K4me1_CH12.LX_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
hsa-miR-4299	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
ghost	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.284253
CREB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.3535
Ebolavirus(EBOV)_6day_PBMCs_17725815_GSE8317	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.2786
Biofilm	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.489
PL45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.985874
496100462_PCx_dementia_TBI_86_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.30281
gametocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.325669
DA-91-NR73_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.568035
amelogenesis imperfecta, type ic	OMIM Gene-Disease Associations	1.0	null
EWSR1	ChEA Transcription Factor Targets	1.0	null
Gastrointestinal system disease	DISEASES Curated Gene-Disease Association Evidence Scores 2025	1.0	4.0
r8 part of inferior olive	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.71392
GTEX-QCQG-2126-SM-2S1P8	GTEx Tissue Sample Gene Expression Profiles	1.0	1.30139
PMC6936254__F2	PFOCR Pathway Figure Associations 2024	1.0	null
TUHR14TKB	CCLE Cell Line Gene CNV Profiles	1.0	1.41089
GSE186810,GSE186813_2_v_0_furin_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
Gingival overgrowth	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.848
superficial stratum of r1Tr	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.05437
NUGC-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.971925
GSE208171_0_v_1_zc4h2_human	RummaGEO Gene Perturbation Signatures	1.0	null
AA-18-GQ83_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.34789
Pax7	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	40.9498
GTEX-WQUQ-1326-SM-3MJFF	GTEx Tissue Sample Gene Expression Profiles	1.0	0.952269
Head and Neck squamous cell carcinoma_HNSC_TCGA-HD-8224-01A-11R-2403-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lung adenocarcinoma_LUAD_TCGA-MP-A5C7-01A-11R-A262-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.388
PHC3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.82962
GTEX-UPK5-0326-SM-3GAF3	GTEx Tissue Sample Gene Expression Profiles	1.0	0.856933
IE-28-SY71_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.261407
PMC8995652-Table_10.XLS-hsa-miR-449a-HNF4A_HNF4A	Rummagene Transcription Factor Associations 2026	1.0	null
embryonic stem no feeder	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-1.18386
TBX20	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.12984
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-7250-11A-01R-2016-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
invertebrate mandible	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.335
abnormal tooth wear	MGI Mouse Phenotype Associations 2023	1.0	null
abnormality of the prostate	GWASdb SNP-Phenotype Associations	1.0	0.730636
hsa-miR-3913-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
Cellular bud neck contractile ring	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.709
MD-92-LN15_0.01uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.457727
LD-37-JE11_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.405424
chinese	GeneRIF Biological Term Annotations	1.0	null
placenta	HPA Tissue Gene Expression Profiles	-1.0	-1.03532
Dental pulp calcification	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.079
substituted	GeneRIF Biological Term Annotations	1.0	null
hsa-miR-340	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
enlarged heart	IMPC Knockout Mouse Phenotypes	1.0	null
FE-10-KQ78_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	1.45879
prostate neoplasm	GWASdb SNP-Phenotype Associations	1.0	0.730636
disease of metabolism	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.040694
Liver hepatocellular carcinoma_LIHC_TCGA-DD-A4NE-01A-11R-A27V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Amelogenesis imperfecta hypomaturation type 2A3	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.326
LMX1A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.3117
mantle zone of r6Co	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.1809
H3K4me2_CD14-positive monocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Autosomal recessive disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.617
calcinosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.127957
NCI-H1373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29982
Hemidesmosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.407
PTK7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.95954
GSE235066_7_v_0_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
Palate	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.229
GTEX-OXRL-0326-SM-2I3F2	GTEx Tissue Sample Gene Expression Profiles	1.0	1.11142
mantle zone of r8BI	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.04366
abnormal genital system morphology	GWASdb SNP-Phenotype Associations	1.0	0.121449
Disease of mental health	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.191
H3K27ac_B cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
GSE171352_2_v_3_glucagon_human	RummaGEO Drug Perturbation Signatures	-1.0	null
MEL-HO	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GSE171837_3_v_2_bortezomib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE195568_3_v_7_palbociclib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
POU4F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.1732
OVKATE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.62422
SIX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.3228
autosomal dominant inheritance	HPO Gene-Disease Associations	1.0	null
GTEX-QLQ7-0826-SM-447B3	GTEx Tissue Sample Gene Expression Profiles	1.0	1.00837
primary motor-sensory cortex (samples)_8 pcw_M_13058	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.41058
Taenia tecta, dorsal part, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-3.36367
Jalili syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.428
nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.043723
Dystonia 24	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.15
639-V	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GTEX-U412-0326-SM-3DB9L	GTEx Tissue Sample Gene Expression Profiles	1.0	0.848258
GSE168797_2_v_3_cannabidiol_human	RummaGEO Drug Perturbation Signatures	-1.0	null
superficial stratum of isBI	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.50346
GTEX-WFON-0226-SM-3GIKR	GTEx Tissue Sample Gene Expression Profiles	1.0	1.13646
Brain Lower Grade Glioma_LGG_TCGA-DB-5281-01A-01R-1470-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
periventricular stratum of r9BM	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.13021
intracellular non-membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.282926
skin_6a	HPA Tissue Sample Gene Expression Profiles	-1.0	-0.93142
compared	GeneRIF Biological Term Annotations	1.0	null
GTEX-SUCS-1326-SM-4DM5T	GTEx Tissue Sample Gene Expression Profiles	1.0	0.927504
MRPL17	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.6672
Orofacial cleft 7	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.074
probands	GeneRIF Biological Term Annotations	1.0	null
BB-52-LF37_0.01uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.506098
496100335_PCx_no dementia_TBI_81_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.23106
Perturb_12106_KO_Fcgr2b_SRP326159	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	5.12019
HOXD4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.1658
brazilian	GeneRIF Biological Term Annotations	1.0	null
abnormal enamel morphology	MPO Gene-Phenotype Associations	1.0	null
Hereditary Gingival Fibromatosis	DisGeNET Gene-Disease Associations	1.0	null
Buccal epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.897
cell	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.583012
Amelogenesis imperfecta hypomaturation type 2A5	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.489
Rickets	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.733
Secretory cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.162
layer 6b of PaS	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.49988
primary auditory cortex (core)_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.33394
posterior (caudal) superior temporal cortex (area 22c)_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.06034
H2AFZ_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ctnnb1_19652203_myeloma_lof_human_gpl570_gds3578	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	1.0	0.691439
form	GeneRIF Biological Term Annotations	1.0	null
STAT3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.1123
BFTC-905	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.89996
decreased total body fat amount	MGI Mouse Phenotype Associations 2023	1.0	null
intermediate-density lipoprotein particle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.679
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A2GS-06A-12R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
prostate_4b	HPA Tissue Sample Gene Expression Profiles	-1.0	-0.93142
Enamelin	InterPro Predicted Protein Domain Annotations	1.0	null
GSE118794_5_v_1_zmynd8_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
positive regulation of tooth mineralization	GO Biological Process Annotations 2025	1.0	null
Osteoblast cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.51
Subparaventricular zone	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.01985
KP1N	DepMap CRISPR Gene Dependency	1.0	3.38639
CENPU	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.05935
decreased erythrocyte cell number	MGI Mouse Phenotype Associations 2023	1.0	null
Monogenic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.925
decreased bone mineral density	MGI Mouse Phenotype Associations 2023	1.0	null
Integrin alphav-beta6 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.617
shows	GeneRIF Biological Term Annotations	1.0	null
cementum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.13368
RXRA::VDR	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.2
GSE195568_3_v_0_palbociclib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
BSX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.2663
PMC5927328-NIHMS77085-supplement-Table_S4.xlsx-Table_S4A_LPS_induced_genes_GO-Unnamed_16_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
NACAD	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.85549
Trichodontoosseous syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.301
craniofacial region	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.574816
ZR7530	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.11757
NCIH510	CCLE Cell Line Gene Expression Profiles	1.0	1.37343
hsa-miR-4728-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
Sarcoma_SARC_TCGA-PC-A5DK-01A-11R-A27Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-CZ-5461-11A-01R-1503-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
LUDLU1	DepMap CRISPR Gene Dependency	1.0	3.02711
VSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.1484
POLR2A	ENCODE Transcription Factor Targets	1.0	null
TAL1-30185409-HPC-MOUSE-BONEMARROW-LEUKEMIA	ChEA Transcription Factor Targets 2022	1.0	null
GSE118794_0_v_1_zmynd8_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Pancreatic adenocarcinoma_PAAD_TCGA-IB-7897-01A-21R-2204-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Extracellular matrix	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
CDX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.321
centromedian nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.35868
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-4712-11A-02R-1503-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
C32	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.76465
primary motor-sensory cortex (samples)_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.907945
GSE210101,GSE210114_0_v_9_urod_human	RummaGEO Gene Perturbation Signatures	-1.0	null
POU5F1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.0518
r5 (gustatory) part of solitary complex	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.02224
localised	GeneRIF Biological Term Annotations	1.0	null
HOP-62	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.830919
fam83h	GeneRIF Biological Term Annotations	1.0	null
dental caries	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.493885
Dentin dysplasia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.656
BC-10-OR76_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.605685
MAPK1_knockdown_145_GSE31912	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	-1.0	-1.32669
cellular_component	LOCATE Predicted Protein Localization Annotations	1.0	null
Odontoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.882
FOSL2::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.3211
TOLEDO	CCLE Cell Line Gene Expression Profiles	1.0	1.71757
GTEX-WFG7-0426-SM-4LMK5	GTEx Tissue Sample Gene Expression Profiles	1.0	0.897211
positive regulation of enamel mineralization	GO Biological Process Annotations 2025	1.0	null
Ameloblastoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.111
Lung adenocarcinoma_LUAD_TCGA-62-8397-01A-11R-2326-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
WC-09-GD62_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	5.34489
QE-79-XO29_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	1.00988
ZNF155	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.07716
Nr2e3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	26.9565
glis2_17618285_kidney_lof_mouse_gpl2897_gds2817	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	-1.0	-0.521922
responsible	GeneRIF Biological Term Annotations	1.0	null
HSC4	DepMap CRISPR Gene Dependency	1.0	2.93363
HMGN1_02_79	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	-1.0	-0.61667
snps	GeneRIF Biological Term Annotations	1.0	null
H3K9ac_CH12.LX_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
Osteosclerosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.395
Skin disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.339
refractive error	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.115522
DMS-79	COSMIC Cell Line Gene Mutation Profiles	1.0	null
abnormal upper incisor color	MGI Mouse Phenotype Associations 2023	1.0	null
BATF	ENCODE Transcription Factor Targets	1.0	null
dental pulp	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.32913
MAFK	ENCODE Transcription Factor Targets	1.0	null
regulation of enamel mineralization	GO Biological Process Annotations 2023	1.0	null
Root resorption	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.782
r10 part of basomedial reticular formation	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.26142
AD-16-HL96_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	9.09747
ventrolateral prefrontal cortex_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.885968
ZNF211	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.0327
MS751	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10793
hsa-miR-379	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
SNU886	CCLE Cell Line Gene CNV Profiles	-1.0	-2.04966
ameloblast differentiation	GO Biological Process Annotations 2023	1.0	null
ESRRB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.067
observed	GeneRIF Biological Term Annotations	1.0	null
hsa-miR-122	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
GSE234289_5_v_2_rfx6_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GTEX-S32W-2326-SM-2XCAW	GTEx Tissue Sample Gene Expression Profiles	1.0	1.72832
r8 (gustatory) part of solitary complex	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.23381
Whipple's Disease_macrophage_GSE16180	GEO Signatures of Differentially Expressed Genes for Diseases	-1.0	-2.31858
Basement membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.925
E2F3_KD_GDS4094_448_mouse_Mammary tumors (Myc-induced)	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
nih 3T3	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-2.04392
OPM2	CCLE Cell Line Gene Expression Profiles	1.0	2.28032
GTEX-PLZ6-1526-SM-2S1OC	GTEx Tissue Sample Gene Expression Profiles	1.0	1.22724
Meningioma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.192
prostate cancer	GWASdb SNP-Disease Associations	1.0	0.836043
r10 part of basolateral reticular formation	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.5287
Pancreatic adenocarcinoma_PAAD_TCGA-FB-A4P6-01A-12R-A26U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.3169
Acute Myeloid Leukemia_LAML_TCGA-AB-2817-03A-01T-0736-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
DC-01-WE57_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.321742
medial part of r2B	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.29408
RERFGC1B	CCLE Cell Line Gene Expression Profiles	-1.0	-3.0169
H2AFZ_osteoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
gallbladder_5b	HPA Tissue Sample Gene Expression Profiles	1.0	0.846752
EFM19	CCLE Cell Line Gene CNV Profiles	1.0	1.3974
Neuro D	MotifMap Predicted Transcription Factor Targets	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-FG-A4MY-01A-11R-A26U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE118794_2_v_1_zmynd8_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
nervous system benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.13886
GTEX-QCQG-0426-SM-48U29	GTEx Tissue Sample Gene Expression Profiles	1.0	1.04727
superficial stratum of THyB-P	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.0133
extracellular region	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
salivarygland_6c	HPA Tissue Sample Gene Expression Profiles	-1.0	-0.93142
TEAD2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.4613
HDAC1	ENCODE Transcription Factor Targets	1.0	null
GTEX-WY7C-0526-SM-3NB3D	GTEx Tissue Sample Gene Expression Profiles	1.0	1.27189
hsa-miR-1292	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
GSE128634,GSE128636_2_v_3_foxo1_human	RummaGEO Gene Perturbation Signatures	1.0	null
intracellular part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.568832
viscus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.60893
F2R	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.89496
neuron part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.060671
accelerated tooth eruption	MPO Gene-Phenotype Associations	1.0	null
columnar/cuboidal epithelial cell differentiation	GO Biological Process Annotations 2025	1.0	null
Teeth hard tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	3.438
posteromedial visual area, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.40303
dorsolateral prefrontal cortex_13 pcw_M_12888	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.04702
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-7091-11A-01R-2016-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE89154_1_v_0_proscillaridin_human	RummaGEO Drug Perturbation Signatures	1.0	null
Ameloblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	3.691
Skin Cutaneous Melanoma_SKCM_TCGA-ER-A3ET-06A-11R-A20F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GTEX-P4QS-1126-SM-3NMD5	GTEx Tissue Sample Gene Expression Profiles	1.0	1.4549
FNBP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.55131
Liver hepatocellular carcinoma_LIHC_TCGA-BW-A5NQ-01A-11R-A27V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Dentinogenesis Imperfecta	DisGeNET Gene-Disease Associations	1.0	null
mantle zone of r5Co	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.01267
r7 part of the basointermediate reticular formation	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.0011
GTEX-XPVG-2226-SM-4B65U	GTEx Tissue Sample Gene Expression Profiles	1.0	0.894354
absent Tomes' process	MGI Mouse Phenotype Associations 2023	1.0	null
Gingival recession	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.382
OVMIU	DepMap CRISPR Gene Dependency	1.0	9.68417
Skin - Sun Exposed (Lower leg)	GTEx Tissue Gene Expression Profiles 2023	1.0	5.58558
GSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8999
GTEX-TML8-1826-SM-32QOR	GTEx Tissue Sample Gene Expression Profiles	1.0	1.62416
Autosomal dominant disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.831
amelx	GeneRIF Biological Term Annotations	1.0	null
G111	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.52328
Odontogenesis Imperfecta	DisGeNET Gene-Disease Associations	1.0	null
PK-59	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10893
BB-74-RX30_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.656264
changes	GeneRIF Biological Term Annotations	1.0	null
GSE76425_0_v_7_lenalidomide_human	RummaGEO Drug Perturbation Signatures	1.0	null
Cell cortex region	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.192
NOMO1	DepMap CRISPR Gene Dependency	1.0	2.43974
intermediate stratum of r2BM	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.11492
OPM2	Achilles Cell Line Gene Essentiality Profiles	1.0	2.04362
Perturb_5917_KD_HNRNPL_SRP271175	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	4.82249
cerebellum_12 pcw_F_12960	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.891625
H2AFZ_skeletal muscle myoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GTEX-UPIC-1126-SM-4IHLO	GTEx Tissue Sample Gene Expression Profiles	1.0	1.32987
Liver hepatocellular carcinoma_LIHC_TCGA-CC-A3MC-01A-11R-A22L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC10115638-41591_2023_2255_MOESM4_ESM.xlsx-HGG_MYCN_deletions-Unnamed_4_MYCN	Rummagene Transcription Factor Associations 2026	1.0	null
SNU840	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.35443
viral infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.485505
hsa-miR-4793-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
Endoplasmic reticulum-plasma membrane contact site	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.994
FOXO4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.0585
KMS-12-BM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10793
Bone matrix	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.334
mmp20	GeneRIF Biological Term Annotations	1.0	null
Perturb_12923_KO_Arid1a_SRP305322	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-2.98948
H3K27me3_G1E-ER4_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Renal hypomagnesemia 5 with ocular involvement	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.045
bonemarrow_6a	HPA Tissue Sample Gene Expression Profiles	-1.0	-0.93142
Gastrointestinal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.526
WC-38-CZ02_0.01uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.467233
Bladder Urothelial Carcinoma_BLCA_TCGA-CU-A0YN-11A-11R-A10U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
serine-type endopeptidase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.479
Kidney Chromophobe_KICH_TCGA-KO-8403-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hsa-miR-670	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
presynaptic cytoskeletal matrix assembled at active zones	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.544411
primary somatosensory cortex (area S1, areas 3,1,2)_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.68733
Tooth and nail syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.02
GATA3-26560356-CHIP-SEQ-TH2-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
decreased circulating cholesterol level	MGI Mouse Phenotype Associations 2023	1.0	null
Pancreatic adenocarcinoma_PAAD_TCGA-3A-A9IO-01A-11R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Tooth	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	3.349
Dental Caries In Children	DisGeNET Gene-Disease Associations	1.0	null
NCIH2052	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.03296
GTEX-XPVG-0726-SM-4B658	GTEx Tissue Sample Gene Expression Profiles	1.0	1.10689
Liver hepatocellular carcinoma_LIHC_TCGA-CC-5258-01A-01R-A131-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE151782_6_v_5_aim2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
posteroventral (inferior) parietal cortex_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.08683
Amelogenesis imperfecta	DISEASES Curated Gene-Disease Association Evidence Scores 2025	1.0	4.0
GSE94849_6_v_4_pinometostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
BATF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.6312
Alveolar bone	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	3.41
Pek	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.541
COV362	Achilles Cell Line Gene Essentiality Profiles	1.0	1.45807
organ system cancer	GWASdb SNP-Disease Associations	1.0	0.045229
Immunodeficiency 9	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.8
POU3F4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.2869
FTC238	CCLE Cell Line Gene CNV Profiles	-1.0	-2.06788
CCK81	DepMap CRISPR Gene Dependency	1.0	3.34468
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.978751
GTEX-VJWN-0426-SM-3GIJI	GTEx Tissue Sample Gene Expression Profiles	1.0	1.75422
Pancreatic adenocarcinoma_PAAD_TCGA-IB-7654-01A-11R-2156-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SR cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.957
heart	GTEx Tissue Gene Expression Profiles	1.0	1.00424
anterior (rostral) cingulate (medial prefrontal) cortex_4 mos_M_12296	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.18752
EPLC272H	DepMap CRISPR Gene Dependency	1.0	2.50944
GSE186810,GSE186813_2_v_0_furin_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
POU2F1::SOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	82.4794
JUN-26020271-SMOOTH-MUSCLE-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
abnormal tooth development	MPO Gene-Phenotype Associations	1.0	null
abnormality of the cardiovascular system	GWASdb SNP-Phenotype Associations	1.0	0.043536
CSNK1A1	KEA Substrates of Kinases	1.0	null
Lung adenocarcinoma_LUAD_TCGA-86-8669-01A-11R-2403-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Apical complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.954
changing	GeneRIF Biological Term Annotations	1.0	null
Taenia tecta	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.01379
SRCAP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.54436
periventricular stratum of r6Co	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.59442
Linear skin defects with multiple congenital anomalies 1	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.075
Golgi lumen	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.551
Skin Cutaneous Melanoma_SKCM_TCGA-ER-A19Q-06A-11R-A18U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE228413_4_v_3_mavs_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
FD-77-ZV22_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.259546
occipital neocortex_9 pcw_M_12833	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-2.16317
Brain Lower Grade Glioma_LGG_TCGA-P5-A5F6-01A-11R-A28M-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GTEX-WHWD-0326-SM-3LK6L	GTEx Tissue Sample Gene Expression Profiles	1.0	1.17807
GSE148657_3_v_0_cd44_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE225900_1_v_0_hsdl2_human	RummaGEO Gene Perturbation Signatures	1.0	null
inferolateral temporal cortex (area TEv, area 20)_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.09814
GTEX-REY6-0826-SM-2TF4S	GTEx Tissue Sample Gene Expression Profiles	1.0	1.06455
JD-87-MR82_0.01uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.641394
GTEX-R53T-0926-SM-3GADH	GTEx Tissue Sample Gene Expression Profiles	1.0	1.52642
Kidney renal clear cell carcinoma_KIRC_TCGA-A3-3374-01A-02R-1325-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Taenia tecta, dorsal part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.81663
mantle zone of r9BL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.04193
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-7406-11A-01R-2081-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Thymus	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	0.857542
H3K27me3_MEL cell line_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Amelogenesis imperfecta type 1G	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.535
Mature stage	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.952
guanine	GeneRIF Biological Term Annotations	1.0	null
CEBPB-22108803-LS180-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
abnormal ameloblast morphology	MGI Mouse Phenotype Associations 2023	1.0	null
UF-27-HS98_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.433104
X-linked monogenic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.039
calcium metabolism disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.111642
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.03451
GSE178267_2_v_4_vemurafenib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
EVX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.1999
CHUK	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.93528
LK2	CCLE Cell Line Gene Expression Profiles	-1.0	-1.67274
decreased body weight	MGI Mouse Phenotype Associations 2023	1.0	null
detected	GeneRIF Biological Term Annotations	1.0	null
pcr	GeneRIF Biological Term Annotations	1.0	null
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.3791
work	GeneRIF Biological Term Annotations	1.0	null
Rectum adenocarcinoma_READ_TCGA-AG-4021-01A-01R-1736-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE174701_1_v_0_maml3_human	RummaGEO Gene Perturbation Signatures	-1.0	null
MAJIN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.71959
HDAC6_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
AD-66-NO48_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.46833
Foxj2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	52.9026
H2BK15ac_IMR90	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
Pancreatic adenocarcinoma_PAAD_TCGA-IB-8126-01A-11R-2404-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Gingival fibromatosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.851
PC-86-EW46_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.273609
Germ layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.674
GTEX-P44H-0726-SM-48TBT	GTEx Tissue Sample Gene Expression Profiles	1.0	0.828762
GSE137325_3_v_0_copanlisib_human	RummaGEO Drug Perturbation Signatures	1.0	null
FOXP4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.7308
HS695T	DepMap CRISPR Gene Dependency	1.0	2.29005
Perturb_5906_KD_ERH_SRP271175	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	15.9321
estradiol_oncorhynchus mykiss_gpl2096_gse5643	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
ATF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.7112
r7 part of the dorsal cochlear nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.00086
Oral mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.733
SNU-387	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.971925
OV90	Achilles Cell Line Gene Essentiality Profiles	1.0	1.31854
hsa-miR-4697-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
Rough endoplasmic reticulum	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.201
abnormality of dental color	HPO Gene-Disease Associations	1.0	null
isthmic part of the intermediate lateral lemniscal nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.24801
OAW28	CCLE Cell Line Gene Expression Profiles	-1.0	-1.51366
Central medial nucleus of the thalamus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.15295
Bladder Urothelial Carcinoma_BLCA_TCGA-MV-A51V-01A-11R-A26T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lhx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	70.0
Amelogenesis Imperfecta	CTD Gene-Disease Associations	1.0	2.88009
BB-57-AZ77_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.239779
primary auditory cortex (core)_30 yrs_F_12290	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.848769
tcof1_15522210_neuroblastoma_lof_mouse_gpl339_gds998	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	1.0	0.145588
Dlx4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	14.1113
Urinary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.314
non-membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.282926
Lung squamous cell carcinoma_LUSC_TCGA-85-8071-01A-11R-2247-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Mandibular incisor	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.839
CAL-62	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Androgen insensitivity syndrome_Fibroblast_GSE3871	GEO Signatures of Differentially Expressed Genes for Diseases	-1.0	-2.05399
arginine	GeneRIF Biological Term Annotations	1.0	null
EF-74-KW12_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.467763
bile duct disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.299092
GTEX-OOBJ-1526-SM-3NB1Q	GTEx Tissue Sample Gene Expression Profiles	1.0	0.901485
GTEX-QDVJ-0426-SM-2I5FW	GTEx Tissue Sample Gene Expression Profiles	1.0	0.825577
abnormal tooth eruption	MPO Gene-Phenotype Associations	1.0	null
Apical bud	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.9
substantia nigra reticulata, m1 part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.52876
Mouth disease	DISEASES Curated Gene-Disease Association Evidence Scores 2025	1.0	4.0
lateral part of r10B	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.52537
developmental process	GO Biological Process Annotations 2015	1.0	null
Hoxa13	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	33.7493
septum (resp epith)	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	1.04887
Germ cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.888
Foxj3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	75.0332
GTEX-PSDG-0926-SM-2I5FP	GTEx Tissue Sample Gene Expression Profiles	1.0	0.989922
GTEX-RN64-0326-SM-2TC5J	GTEx Tissue Sample Gene Expression Profiles	1.0	1.62799
abnormal molar crown morphology	MGI Mouse Phenotype Associations 2023	1.0	null
evaluated	GeneRIF Biological Term Annotations	1.0	null
IE-30-KW32_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.565077
all	GWASdb SNP-Phenotype Associations	1.0	0.030575
NCI-H2023	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02979
Prostate adenocarcinoma_PRAD_TCGA-HC-7737-11A-02R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
r3 roof plate	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.68784
Acquired metabolic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.114
r5 part of the cochlear column	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.01201
hsa-miR-4419a	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
GSE135030_11_v_5_fludarabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
SJRH30	CCLE Cell Line Gene CNV Profiles	1.0	1.57699
H4K8ac_IMR90	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
superficial stratum of r10Ve	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.16613
sample	GeneRIF Biological Term Annotations	1.0	null
hsa-miR-3672	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
GF-57-LR72_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.267293
Perturb_5929_KD_MBD3_SRP271175	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	1.75977
NCIH1435	CCLE Cell Line Gene CNV Profiles	1.0	1.91422
BC-56-WO88_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.239578
PARPBP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.46968
NCIH23	DepMap CRISPR Gene Dependency	1.0	2.72372
evolution	GeneRIF Biological Term Annotations	1.0	null
LOUNH91	DepMap CRISPR Gene Dependency	1.0	2.06945
rostromedial tegmental nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.38101
Amelogenesis imperfecta - hypoplastic autosomal dominant - local	ClinVar Gene-Phenotype Associations	1.0	null
RNF141	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.27533
Primary failure of tooth eruption	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.065
support	GeneRIF Biological Term Annotations	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-CS-6669-01A-11R-1896-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Arid3b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	15.7076
ARSA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.4173
Bladder Urothelial Carcinoma_BLCA_TCGA-BT-A20U-11A-11R-A14Y-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE120612_6_v_1_etoposide_human	RummaGEO Drug Perturbation Signatures	1.0	null
MEIS2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.566
Apical part of cell	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.959
HF-57-QB74_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.265968
PKNOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.116
hsa-miR-488	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
FOXA1-21572438-LNCAP-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
anatomical structure development	GO Biological Process Annotations 2015	1.0	null
Nfat5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	23.7022
Adenoiditis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.058
absent enamel	MGI Mouse Phenotype Associations 2023	1.0	null
Periodontal ligament cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.667
b-lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.083452
columnar/cuboidal epithelial cell differentiation	GO Biological Process Annotations 2023	1.0	null
NCIH1385	CCLE Cell Line Gene Expression Profiles	1.0	1.48484
serine-type peptidase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.479
GTEX-XMK1-2026-SM-4B65K	GTEx Tissue Sample Gene Expression Profiles	1.0	1.05252
AA-51-RY00_0.01uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.225108
ZNF35	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.8228
intracellular organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
GTEX-XBED-2026-SM-4AT5D	GTEx Tissue Sample Gene Expression Profiles	1.0	1.15081
GSE120612_7_v_5_etoposide_human	RummaGEO Drug Perturbation Signatures	1.0	null
Nfatc2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	24.3384
SRSF4_02_04	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	2.80735
TAL1-22897851-JUKARTE6-1-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
GSE135030_11_v_2_fludarabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
POU3F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.4254
posterior (caudal) superior temporal cortex (area 22c)_24 pcw_M_12288	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.13615
HS822T	CCLE Cell Line Gene Expression Profiles	-1.0	-1.76942
TFAP2C	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.477
STAT3	ENCODE Transcription Factor Targets	1.0	null
composition	GeneRIF Biological Term Annotations	1.0	null
GTEX-PWOO-0526-SM-2S1Q3	GTEx Tissue Sample Gene Expression Profiles	1.0	0.858909
GSE200982_0_v_2_plac8_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Calvarium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.143
angioblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.307528
EWS-ERG-20517297-CADO-ES1-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
Pilomatrixoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.102
GSE228992_0_v_1_mafb_human	RummaGEO Gene Perturbation Signatures	1.0	null
GTEX-QV31-0626-SM-447C5	GTEx Tissue Sample Gene Expression Profiles	1.0	0.898314
cellular_component	LOCATE Curated Protein Localization Annotations	1.0	null
GTEX-QDT8-0526-SM-3NMD8	GTEx Tissue Sample Gene Expression Profiles	1.0	1.36561
ovary_6b	HPA Tissue Sample Gene Expression Profiles	-1.0	-0.93142
Hair follicle neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.099
NFIC_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
abnormal internal genitalia	GWASdb SNP-Phenotype Associations	1.0	0.16963
EFM19	DepMap CRISPR Gene Dependency	1.0	4.27384
r6 part of the cochlear column	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.18156
HOXB2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.7673
GTEX-UTHO-0726-SM-3GAEN	GTEx Tissue Sample Gene Expression Profiles	1.0	1.5092
PMC6080909-JEM_20171312_TableS1.xlsx-miR-196_predicted-Table_S1_miR-196a_b_predicted_targets_by_PITA_PicTar_TargetScan_and_DIANA_prediction_algorithms_ZFP1	Rummagene Transcription Factor Associations 2026	1.0	null
formation	GeneRIF Biological Term Annotations	1.0	null
located	GeneRIF Biological Term Annotations	1.0	null
BC-94-PR16_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.217216
GSE188870,GSE188871_4_v_5_kat7_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
amygdaloid complex_13 pcw_M_12888	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.16489
Oral epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.644
A172	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.16528
GTEX-X5EB-0626-SM-46MVQ	GTEx Tissue Sample Gene Expression Profiles	1.0	1.41001
reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.28547
pyrazinamide_mus musculus_gpl6246_gse48027	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
decreased body mass index	MGI Mouse Phenotype Associations 2023	1.0	null
Amelogenesis imperfecta	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	3.37
less	GeneRIF Biological Term Annotations	1.0	null
hepatitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.831508
FOSL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.1032
HOXB4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.8413
mouth disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.94689
Physical disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.191
FOXA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.6288
SREBF1	JASPAR Predicted Transcription Factor Targets	1.0	null
hematopoietic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054358
absent enamel	MPO Gene-Phenotype Associations	1.0	null
A-VN-1203-2004(H5N1)_Day1-10^3pfu_22074594_GSE33263	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	2.41455
DLX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.3323
EC-40-DQ58_0.01uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.334056
GTEX-P44H-0426-SM-2XCEZ	GTEx Tissue Sample Gene Expression Profiles	1.0	1.58823
Postsubiculum, layer 3	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.24598
Skin Cutaneous Melanoma_SKCM_TCGA-EB-A3Y6-01A-21R-A239-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Malocclusion	DisGeNET Gene-Disease Associations	1.0	null
dominant	GeneRIF Biological Term Annotations	1.0	null
cellular_component	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.830007
PC3	CCLE Cell Line Gene CNV Profiles	1.0	1.44659
A-673	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.68898
adult	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.212586
abnormal heart morphology	MGI Mouse Phenotype Associations 2023	1.0	null
GSE138938_1_v_2_foxp2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
AD-16-HL96_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	6.58168
OE-04-VO07_0.01uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.322739
WC-09-GD62_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.768138
Dental abscess	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.38
layer 1 of LOT	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.57391
r9 part of the basolateral reticular formation	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.18032
Endoplasmic reticulum lumen	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
ZNF253	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.75306
KCNE5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.28613
GTEX-RTLS-0526-SM-2TF64	GTEx Tissue Sample Gene Expression Profiles	1.0	1.7054
structural constituent of tooth enamel	GO Molecular Function Annotations 2025	1.0	null
GTEX-X5EB-2026-SM-4E3KA	GTEx Tissue Sample Gene Expression Profiles	1.0	1.4972
HOXB7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.7226
embryonic structure	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.44079
FOXA2	JASPAR Predicted Transcription Factor Targets	1.0	null
Lung adenocarcinoma_LUAD_TCGA-05-4422-01A-01R-1206-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
brachyolmia-amelogenesis imperfecta syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.775
M14	COSMIC Cell Line Gene Mutation Profiles	1.0	null
m2 part of substantia nigra compacta	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.26355
Shell Teeth	DisGeNET Gene-Disease Associations	1.0	null
SUDHL10	DepMap CRISPR Gene Dependency	1.0	2.78908
Cardiovascular system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.188
BL70	CCLE Cell Line Gene Expression Profiles	1.0	1.77785
BV173	CCLE Cell Line Gene Expression Profiles	1.0	2.55989
superficial stratum of Str	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.1916
HA-30-KD77_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.365894
GTEX-PWN1-1526-SM-48TDA	GTEx Tissue Sample Gene Expression Profiles	1.0	0.830525
MDA-MB-453	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Epithelial stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.42
QE-93-PG25_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.353381
EMX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.5883
enamel epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.41999
GSE109530,GSE109531_1_v_3_hdac3_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GTEX-WFG8-0726-SM-3GILP	GTEx Tissue Sample Gene Expression Profiles	1.0	0.962266
basement membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.168101
hsa-miR-324-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
Lung adenocarcinoma_LUAD_TCGA-78-7156-01A-11R-2039-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
IE-44-DP45_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.409928
Tooth erosion	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.018
NKX6-3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.3965
Pharyngeal tooth	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.24
GTEX-XPVG-0526-SM-4B65N	GTEx Tissue Sample Gene Expression Profiles	1.0	1.28363
dental papilla	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.275444
blast cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.063926
Shox2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	15.167
drug-induced hepatitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.18238
H3K27me3_MEL cell line_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-DU-5855-01A-11R-1708-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NF-21-HQ00_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.340503
Buccal mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.908
Acute Myeloid Leukemia_LAML_TCGA-AB-2899-03A-01T-0736-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.373
BEN	CCLE Cell Line Gene CNV Profiles	1.0	1.44724
HS729	CCLE Cell Line Gene CNV Profiles	1.0	1.69077
disease of anatomical entity	GWASdb SNP-Disease Associations	1.0	0.026429
ovarian disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.07141
LP-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.921664
Superior central nucleus raphe, lateral part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.26042
HEP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.869583
Musculoskeletal system benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.161
BATF_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.7487
genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.047849
BL41	CCLE Cell Line Gene CNV Profiles	-1.0	-1.79446
seen	GeneRIF Biological Term Annotations	1.0	null
MCC13	COSMIC Cell Line Gene Mutation Profiles	1.0	null
QGP-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GSE224742_0_v_1_slc1a5_human	RummaGEO Gene Perturbation Signatures	1.0	null
PMC10661700-41525_2023_383_MOESM2_ESM.xlsx-Supp_Table5_gnomAD_SAS_GCR-SYMBOL_NR3C1	Rummagene Transcription Factor Associations 2026	1.0	null
AA-86-YY62_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.578874
GSE233183,GSE233187_3_v_9_larp1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Arx	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	33.1521
ILF2_02_152	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	3.0
HCC2218	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.798621
AA-45-SU80_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.768344
GTEX-P4QR-0726-SM-2I5GO	GTEx Tissue Sample Gene Expression Profiles	1.0	1.03936
Ameloblastic layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	3.424
hsa-miR-567	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
MEIS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.9774
Primary somatosensory area, mouth, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.03504
dentin	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.8281
hsa-miR-142-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
decreased hemoglobin concentration distribution width	MGI Mouse Phenotype Associations 2023	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-HI-7169-01A-11R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.3939
Tooth disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	3.412
amygdaloid complex_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.854339
Perturb_5935_KD_MYBBP1A_SRP271175	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	7.73828
TA-57-FF07_0.01uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.508099
H3K4me1_CH12.LX_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
UACC-257	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.971925
Renal tubular transport disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.419
thyroid	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	0.877811
GTEX-P4QS-2126-SM-3NMCF	GTEx Tissue Sample Gene Expression Profiles	1.0	1.10063
Kidney Chromophobe_KICH_TCGA-KO-8411-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC11330984-41467_2024_51229_MOESM6_ESM.xlsx-MYC_UP-ID_SYMBOL_MYC	Rummagene Transcription Factor Associations 2026	1.0	null
heart_6a	HPA Tissue Sample Gene Expression Profiles	1.0	0.889118
reduced enamel thickness	MGI Mouse Phenotype Associations 2023	1.0	null
Large congenital melanocytic nevus	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.239
NCI-N87	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.921664
ethmoid nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.40097
primary biliary cirrhosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.641433
hypersensitivity reaction type ii disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.11519
NCI-H2135	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.53995
Preosteoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.238
PGR	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.65799
KM12	Achilles Cell Line Gene Essentiality Profiles	1.0	1.03519
EJM	DepMap CRISPR Gene Dependency	1.0	5.84007
termination	GeneRIF Biological Term Annotations	1.0	null
cone-rod dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.266558
extracellular matrix	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.040499
GSE120612_4_v_5_etoposide_human	RummaGEO Drug Perturbation Signatures	1.0	null
JcP contribution to LTL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.6224
EB-09-JJ93_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.383196
reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042999
superficial stratum of AOD	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.12642
Orbital area, medial part, layer 2/3	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.06715
myeloid progenitor cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.066368
Perturb_1251_KO_MED1_ERP116563	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-3.53121
Head and Neck squamous cell carcinoma_HNSC_TCGA-CN-5360-01A-01R-1436-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hsa-miR-3116	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
extracellular matrix part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.509604
FOXO6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.8276
E2F2_KD_GDS4094_447_mouse_Mammary tumors (Myc-induced)	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-22-4591-01A-01R-1201-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Sarcoma_SARC_TCGA-FX-A2QS-11A-11R-A21T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
periodontium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.732677
abnormal molar morphology	MPO Gene-Phenotype Associations	1.0	null
FOXK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.4915
GTEX-V955-0326-SM-4JBGV	GTEx Tissue Sample Gene Expression Profiles	1.0	1.04185
Dental Enamel Hypoplasia	DisGeNET Gene-Disease Associations	1.0	null
chromosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.106167
Liver hepatocellular carcinoma_LIHC_TCGA-BC-A10W-01A-11R-A131-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Dental pulp disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.868
Epulis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.206
thyroid_5b	HPA Tissue Sample Gene Expression Profiles	-1.0	-0.93142
Brain - Substantia nigra	GTEx Tissue Gene Expression Profiles 2023	1.0	0.944505
Organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.283
GTEX-O5YV-0326-SM-2I5H2	GTEx Tissue Sample Gene Expression Profiles	1.0	1.03632
CardiacMyocytes	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-1.45843
SUM149PT	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.98974
RDH11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.67712
HCC1143	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.23047
Autoimmune Hepatitis	DisGeNET Gene-Disease Associations	1.0	null
IC-72-HR20_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.652684
head	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.69351
COV504	DepMap CRISPR Gene Dependency	1.0	3.31199
unrelated	GeneRIF Biological Term Annotations	1.0	null
hsa-miR-4711-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
A-Vietnam-1203_CIP048_RG3-2004(H5N1)PB1-F2del_1day-MOI-10^4_None_GSE44441	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-2.26138
GTEX-WFG7-0726-SM-3GIKO	GTEx Tissue Sample Gene Expression Profiles	1.0	1.33205
pancreas	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	0.915038
layer 2 of PaS	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.12186
Medial geniculate complex, dorsal part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.43578
Incisor	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	3.075
NCIH1339	CCLE Cell Line Gene CNV Profiles	1.0	1.58901
GSE195514_0_v_1_stk25_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Glucose metabolism disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.092
mediodorsal nucleus of thalamus_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.13648
r2 part of lateral pontine nuclei	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.70471
NCI-H2803	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04194
Dental pulp	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.673
periventricular stratum of r9Tr	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.26004
Ectodermal dysplasia 1	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.344
primary somatosensory cortex (area S1, areas 3,1,2)_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.875594
HEY	DepMap CRISPR Gene Dependency	1.0	4.45178
STAT3-19079543-MESC-mouse	ChEA Transcription Factor Binding Site Profiles	1.0	null
gingival disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.333583
GlobusPallidus	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	0.824971
Osteocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.298
CE-66-GR30_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.217032
Ewing's family tumor cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.643
PMC6936254__F2	PFOCR Pathway Figure Associations 2023	1.0	null
GSE234289_5_v_0_rfx6_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Stellate reticulum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.534
GSE141328_1_v_0_rock2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
exotropia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.588612
GTEX-WK11-0626-SM-3NMAV	GTEx Tissue Sample Gene Expression Profiles	1.0	1.11124
enamel	GeneRIF Biological Term Annotations	1.0	null
CAOV3	DepMap CRISPR Gene Dependency	1.0	13.8806
Perturb_5952_KD_RBM15_SRP271175	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	8.04505
OVKATE	CCLE Cell Line Gene CNV Profiles	-1.0	-1.58119
Bladder Urothelial Carcinoma_BLCA_TCGA-BT-A20N-11A-11R-A14Y-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
mode of inheritance	HPO Gene-Disease Associations	1.0	null
Dux	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	37.6371
Secondary enamel knot	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.674
eye disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.049851
H3K4me1_spleen_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
ZNF667	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.8371
GSE49929,GSE49931_1_v_0_irf4_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
intermediate part of THyB	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.02578
cytoplasm	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.49499
GSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.8338
GTEX-OIZI-0526-SM-2XCEG	GTEx Tissue Sample Gene Expression Profiles	1.0	0.945009
GTEX-X5EB-0004-SM-46MWA	GTEx Tissue Sample Gene Expression Profiles	1.0	0.82606
Dorsal motor nucleus of the vagus nerve	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.64135
yellow-brown discoloration of the teeth	HPO Gene-Disease Associations	1.0	null
Adrenalgland	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	1.20021
AB-85-YK41_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.228876
SK-MEL-5	COSMIC Cell Line Gene Mutation Profiles	1.0	null
MAFK_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
caries	GeneRIF Biological Term Annotations	1.0	null
premature tooth eruption	MGI Mouse Phenotype Associations 2023	1.0	null
GTEX-WL46-0726-SM-3LK5Z	GTEx Tissue Sample Gene Expression Profiles	1.0	0.929909
HC-74-HM63_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	2.78802
SCC-3	COSMIC Cell Line Gene Mutation Profiles	1.0	null
musculoskeletal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.05276
layer 3 of PrS	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.12992
496100460_TCx_possible Alzheimer's disease_TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.23873
GTEX-RWS6-2126-SM-2XCAV	GTEx Tissue Sample Gene Expression Profiles	1.0	1.07823
lateral terminal nucleus of the accessory optic tract, lateral part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.09749
teeth hard tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	2.47053
PMC10335677-pbio.3002161.s009.xls-MLL_siRNA_DEGs-Ensembl_Symbol_KMT2A	Rummagene Transcription Factor Associations 2026	1.0	null
OVOL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.1959
Enamel organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	3.63
CAKI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.38016
posterior (caudal) superior temporal cortex (area 22c)_8 pcw_M_13058	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.30947
collagen trimer	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.456012
abnormal tooth attrition	MGI Mouse Phenotype Associations 2023	1.0	null
hsa-miR-34a	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.13535
CDX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.1105
hsa-miR-4708-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
Saccule	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.748
NFIC	ENCODE Transcription Factor Targets	1.0	null
GTEX-WZTO-0826-SM-3NM8Q	GTEx Tissue Sample Gene Expression Profiles	1.0	1.39428
genomic	GeneRIF Biological Term Annotations	1.0	null
FU97	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10338
Periodontium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.32
dorsolateral prefrontal cortex_15 yrs_M_12299	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.46858
GTEX-XBEC-0126-SM-4GIDT	GTEx Tissue Sample Gene Expression Profiles	1.0	1.01244
transferase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.07609
Developmental and epileptic encephalopathy 93	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.073
tissue development	GO Biological Process Annotations 2015	1.0	null
intracellular part	LOCATE Predicted Protein Localization Annotations	1.0	null
mouth disease	DISEASES Curated Gene-Disease Association Evidence Scores	1.0	null
NDUFA7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.81253
H3K4me1_K562_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
PMC3879300-pone.0084292.s002.xlsx-SPD_dataset-Gene_symbol_HOXD13	Rummagene Transcription Factor Associations 2026	1.0	null
GSE153871_1_v_3_cytarabine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
3e1	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.962
Central nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.294
intracellular organelle lumen	GO Cellular Component Annotations 2023	1.0	null
MA-06-DJ95_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.216062
hypocalcified	GeneRIF Biological Term Annotations	1.0	null
GSE131377_1_v_0_spocd1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GC-04-UF36_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	4.46534
FOSB::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.6967
NDC80	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.18948
Rat-2 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.626
Root caries	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.376
GSE128634,GSE128636_4_v_5_foxo1_human	RummaGEO Gene Perturbation Signatures	1.0	null
POU2F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.5408
craniopharyngioma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.263722
plexiform layer of TuStr	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.94402
hsa-miR-3911	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
Subparafascicular nucleus, magnocellular part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.41483
each	GeneRIF Biological Term Annotations	1.0	null
small superior vagus ganglion	MGI Mouse Phenotype Associations 2023	1.0	null
Body fat percentage	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.730103
hsa-miR-3143	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
hsa-miR-548m	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.13535
endogenous progenitor cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.449116
tooth bud	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.405176
endoplasmic reticulum lumen	GO Cellular Component Annotations 2025	1.0	null
WA-09 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.604
Caries (Morphologic Abnormality)	DisGeNET Gene-Disease Associations	1.0	null
Pulp	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.307
T47D	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.820945
t-lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.098802
G121	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.985874
amygdaloid complex_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.943083
Arthritis	DisGeNET Gene-Disease Associations	1.0	null
gastrointestinal system disease	DISEASES Curated Gene-Disease Association Evidence Scores	1.0	null
Adrenocortical carcinoma_ACC_TCGA-OR-A5JT-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Sensory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.229
Primary enamel knot	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.692
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.76332
hsa-miR-1254	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
Medullary reticular nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.02103
susceptibility	GeneRIF Biological Term Annotations	1.0	null
ZNF37A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.23222
abnormality of the mouth	HPO Gene-Disease Associations	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-HC-8258-11A-01R-2263-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
E2F7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.9488
MLS syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.129
GTEX-S7SF-0526-SM-3K2BC	GTEx Tissue Sample Gene Expression Profiles	1.0	1.12805
E2F1_KD_GDS4094_446_mouse_Mammary tumors	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
GTEX-UPJH-0126-SM-4IHLL	GTEx Tissue Sample Gene Expression Profiles	1.0	1.09475
thyroid_5a	HPA Tissue Sample Gene Expression Profiles	-1.0	-0.93142
bursts	GeneRIF Biological Term Annotations	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-BF-A3DM-01A-11R-A20F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
physical disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.05668
y chromosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.409089
IRS4_KO_GDS1219_306_mouse_brown preadipocytes	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
superficial stratum of r2BM	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.38552
immune system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.90321
teeth hard tissue disease	DISEASES Curated Gene-Disease Association Evidence Scores	1.0	null
intracellular organelle lumen	GO Cellular Component Annotations 2025	1.0	null
GTEX-R55C-0326-SM-3GAF1	GTEx Tissue Sample Gene Expression Profiles	1.0	0.849727
RT-112	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.81749
TGIF2LX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.9158
amelogenesis	GeneRIF Biological Term Annotations	1.0	null
PHOX2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.3769
RCOR1-19997604-NEURONS-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
candidate	GeneRIF Biological Term Annotations	1.0	null
HDAC6	ENCODE Transcription Factor Targets	1.0	null
Mandible	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.362
positive regulation of enamel mineralization	GO Biological Process Annotations 2023	1.0	null
E2F4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.2291
NCI-N417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.35114
tooth	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	2.64813
Perturb_1212_KO_Zfp580/Sp1_SRP302435	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	4.11273
biliary tract disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.295132
SARS-CoV MA15_Day4-PFU-10^5_None_GSE50000	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.58478
GTEX-R55E-0526-SM-2TC6B	GTEx Tissue Sample Gene Expression Profiles	1.0	1.45795
GSE192663_3_v_2_acly_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
H2AFZ_CD14-positive monocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Cheek	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.047
Infralimbic area, layer 2	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.50591
HTT-18923047-STHdh-human	ChEA Transcription Factor Binding Site Profiles	1.0	null
MSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.462
hsa-miR-4329	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
SNU-601	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.971925
GTEX-RN64-1626-SM-48FD7	GTEx Tissue Sample Gene Expression Profiles	1.0	1.21319
UNCX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.4
Perturb_5947_KD_PRMT1_SRP271175	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	14.9469
MDAMB468	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.907525
organ system benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.054134
Apical cytoplasm	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.828
artery disease	GWASdb SNP-Disease Associations	1.0	0.10148
Creb5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	20.3631
Connective tissue benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.215
Hepatitis C	DisGeNET Gene-Disease Associations	1.0	null
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.38093
DBTRG05MG	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.57618
Metabolism of proteins	Reactome Pathways 2024	1.0	null
female reproductive gland	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	1.53602
IB-33-TE51_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.412046
TEAD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.566
Sendai virus infection_Tracheal epithelium_GSE10211	GEO Signatures of Differentially Expressed Genes for Diseases	-1.0	-1.37233
PMC11330984-41467_2024_51229_MOESM6_ESM.xlsx-MYC_UP-ID_ENSEMBL_MYC	Rummagene Transcription Factor Associations 2026	1.0	null
reproductive organ cancer	GWASdb SNP-Disease Associations	1.0	0.238939
GTEX-XYKS-0226-SM-4BRW3	GTEx Tissue Sample Gene Expression Profiles	1.0	1.23057
FF-01-OH44_0.01uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.223893
fenofibrate_homo sapiens_gpl4044_gse15494	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
Bud	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.781
KPL1	DepMap CRISPR Gene Dependency	1.0	2.73656
abnormal enamel morphology	MGI Mouse Phenotype Associations 2023	1.0	null
possible	GeneRIF Biological Term Annotations	1.0	null
Syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.713
TP53	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.7995
cholangitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.532314
GCIY	CCLE Cell Line Gene Expression Profiles	1.0	1.66126
EBF1	ENCODE Transcription Factor Targets	1.0	null
mRNA_SOX17_20123909	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	-1.0	null
GSE151612_4_v_2_pracinostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
Amelogenesis Imperfecta	DisGeNET Gene-Disease Associations	1.0	null
ZNF280D	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.13373
Anteromedial visual area, layer 6a	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.0667
Gingival epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.372
H3K27me3_fibroblast of dermis_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GTEX-WOFL-0626-SM-3MJG3	GTEx Tissue Sample Gene Expression Profiles	1.0	0.916016
Fastigial nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.17978
RNA helicase p68_KD_GDS2152_625_mouse_skeletal muscle cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
abnormal trabecular bone morphology	MGI Mouse Phenotype Associations 2023	1.0	null
496100529_HIP_no dementia_no TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.54167
GSE211177,GSE211178_9_v_11_ets1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
submedius thalamic nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.43996
GTEX-QEG4-0426-SM-33HC3	GTEx Tissue Sample Gene Expression Profiles	1.0	1.69956
one	GeneRIF Biological Term Annotations	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-EB-A4IS-01A-21R-A266-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
marrow cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.066787
CAL-12T	COSMIC Cell Line Gene Mutation Profiles	1.0	null
abnormal tooth mineralization	MGI Mouse Phenotype Associations 2023	1.0	null
NFIL3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.4327
orbital frontal cortex_8 pcw_M_13058	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.59349
BA-07-GC72_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.265969
Gingival fibroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.299
Kidney Chromophobe_KICH_TCGA-KO-8406-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC11496110-42255_2024_1140_MOESM3_ESM.xlsx-ST18_Gene_view-Supplementary_Table_18_Top_100_FAM46C_co-expressed_genes_according_to_Islet_Gene_View_ST18	Rummagene Transcription Factor Associations 2026	1.0	null
Kidney renal papillary cell carcinoma_KIRP_TCGA-BQ-7055-01A-11R-1965-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
FOSL1::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.9502
Anchoring collagen complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.549
UMUC3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36468
Intermediodorsal nucleus of the thalamus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.49129
GTEX-OXRL-1626-SM-2YUMU	GTEx Tissue Sample Gene Expression Profiles	1.0	1.0299
QE-79-XO29_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	4.08274
FE-69-HJ93_0.01uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.278778
Foxo1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	21.5047
BD-11-DV28_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	7.83411
skull cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.240148
incisor	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.80768
Extraosseus Ewing's sarcoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.74
Lymphoma_burkitts(Raji)	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-1.93704
EOL1	CCLE Cell Line Gene CNV Profiles	1.0	1.3967
PMC11582613-41514_2024_180_MOESM1_ESM.pdf-16-IRX4_IRX4	Rummagene Transcription Factor Associations 2026	1.0	null
HC-74-HM63_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	1.52987
PITX2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.81416
ameloblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	2.73728
primary somatosensory cortex (area S1, areas 3,1,2)_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.85527
GTEX-T5JC-0001-SM-3NMAK	GTEx Tissue Sample Gene Expression Profiles	1.0	0.943936
EWS-ERG-20517297-CADO-ES1-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
outer dental epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.898595
Kidney - Cortex	GTEx Tissue Gene Expression Profiles 2023	1.0	1.14986
striatal part of olfactory tuberculum	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.19092
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-FU-A3HZ-01A-11R-A213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
alveolar bone	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	2.51338
r7 part of the posteroventral cochlear nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.47783
autosomal dominant disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.064112
DBP	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.7217
odontogenesis	GO Biological Process Annotations 2015	1.0	null
inferolateral temporal cortex (area TEv, area 20)_21 pcw_M_12886	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.32776
LASV_FML29_24hr_24069471_GSE41300	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	0.656763
GSE180277_0_v_1_bach2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
posterior (caudal) superior temporal cortex (area 22c)_23 yrs_M_12300	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.02336
decreased circulating triglyceride level	MGI Mouse Phenotype Associations 2023	1.0	null
GTEX-WFON-1126-SM-4LVMA	GTEx Tissue Sample Gene Expression Profiles	1.0	0.953613
TBCCD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.72068
GSE128634,GSE128636_4_v_0_foxo1_human	RummaGEO Gene Perturbation Signatures	1.0	null
UM-UC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.23047
X-linked dominant disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.129
medial (fastigial) cerebellar nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.08245
inferolateral temporal cortex (area TEv, area 20)_23 yrs_M_12300	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.938459
autoimmune disease of endocrine system	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.138846
COR-L23	COSMIC Cell Line Gene Mutation Profiles	1.0	null
U343	Achilles Cell Line Gene Essentiality Profiles	-1.0	-2.62529
GTEX-N7MS-0426-SM-2YUN6	GTEx Tissue Sample Gene Expression Profiles	1.0	0.82696
cranium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.576415
DD-30-SX80_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.593308
intermediate stratum of r10BL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.52537
PMC11827247-41065_2025_387_MOESM5_ESM.xlsx-Sheet_1-Only_ESR_ESR1	Rummagene Transcription Factor Associations 2026	1.0	null
Postsubiculum	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.01672
EWS-26573619-CHIP-SEQ-HEK293-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
COLO 680N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.0061
heterogeneous	HPO Gene-Disease Associations	1.0	null
NCI-H510A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.92055
MDAMB415	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.11171
U266B1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.75352
COLO 320DM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.35114
proper	GeneRIF Biological Term Annotations	1.0	null
Aortic Valve Insufficiency	DisGeNET Gene-Disease Associations	1.0	null
GTEX-RU72-1326-SM-2TF6T	GTEx Tissue Sample Gene Expression Profiles	1.0	1.41628
GTEX-QV31-1426-SM-2S1QD	GTEx Tissue Sample Gene Expression Profiles	1.0	1.09774
Periodontal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.137
NFIC	JASPAR Predicted Transcription Factor Targets	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A2GB-06A-11R-A18T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Sarcoma_SARC_TCGA-HS-A5NA-01A-11R-A26T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SRY	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.2143
GTEX-Q2AG-0426-SM-2S1PU	GTEx Tissue Sample Gene Expression Profiles	1.0	1.51665
EE-02-BO83_0.01uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.306651
SNU-81	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BA-06-RE84_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.289377
BARHL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.7909
CAOV3	CCLE Cell Line Gene CNV Profiles	1.0	1.38808
organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.41221
BEN	CCLE Cell Line Gene Expression Profiles	1.0	1.97882
GTEX-XOT4-0526-SM-4B66O	GTEx Tissue Sample Gene Expression Profiles	1.0	1.37393
GTEX-R55G-0526-SM-2TC5O	GTEx Tissue Sample Gene Expression Profiles	1.0	1.19931
nevoid basal cell carcinoma syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.311739
odontogenesis of dentin-containing tooth	GO Biological Process Annotations 2015	1.0	null
GTEX-QEG5-0426-SM-2I5GJ	GTEx Tissue Sample Gene Expression Profiles	1.0	0.887931
AA-49-BD04_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.201575
HOXA7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.9662
jaw	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.806047
Perturb_5966_KD_SUMO2_SRP271175	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	16.7796
SOX15	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.1653
recessive	GeneRIF Biological Term Annotations	1.0	null
zfx_17448993_embryonic_stem_cell_lof_mouse_gpl1261_gds2718	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	1.0	0.122018
cell part	LOCATE Predicted Protein Localization Annotations	1.0	null
r10 part of external cuneate nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.17019
GTEX-XBED-0526-SM-47JY3	GTEx Tissue Sample Gene Expression Profiles	1.0	1.14677
amygdaloid complex_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.46434
HD-51-KD29_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.23269
Taenia tecta, dorsal part, layer 2	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.62104
liver disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.836427
superficial stratum of r9BL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.02224
layer 6a of PaS	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.06482
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.44924
GSE114992,GSE114993_0_v_5_irf5_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
ND-39-PO34_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	4.75758
Lung adenocarcinoma_LUAD_TCGA-55-1594-01A-01R-0946-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
OA-74-FH10_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.233942
Craniofacial region	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.166
spots complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.826336
kidney_c	HPA Tissue Sample Gene Expression Profiles	1.0	1.25368
estradiol_mus musculus_gpl4134_gse23241	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-FG-A713-01A-11R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GTEX-WFG8-0626-SM-3GILJ	GTEx Tissue Sample Gene Expression Profiles	1.0	0.972785
bone marrow	HPA Tissue Gene Expression Profiles	-1.0	-1.03532
hsa-miR-3175	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
ZNF214	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.1597
described	GeneRIF Biological Term Annotations	1.0	null
HCC202	DepMap CRISPR Gene Dependency	1.0	3.08181
hsa-miR-4668-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
Copula pyramidis, molecular layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.14302
COR-L279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.985874