association	dataset	threshold value	standardized value
NEFL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.72945
Swine testicular cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.14
LARP4B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.69795
HSF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.0452
PNO1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.11234
NCIH2227	CCLE Cell Line Gene CNV Profiles	1.0	1.667
HOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.5019
DPY30	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.28789
TF1	CCLE Cell Line Gene CNV Profiles	1.0	1.63315
PGAM2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.98235
ITGA6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.7327
lung cancer	GWASdb SNP-Disease Associations	1.0	1.05109
SUDS3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.36423
CXCL6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.12063
AIM2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.99072
GMPS	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.85234
TSG101	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.74408
PRDX3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.4375
RSU1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.71231
CPS1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.00659
MANBA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.98959
MPST	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.16066
HMGCS1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.81585
TIMP4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.57004
EAF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.5043
UMUC3	CCLE Cell Line Gene CNV Profiles	1.0	1.37382
NDUFC2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.20536
KMS-12-PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.65249
MYBL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.7616
AGS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.15156
MED28	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.69324
CKS1B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.4759
ZNF155	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.07716
OTX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.5315
MRPL22	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.46812
SYNGR2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.57479
MKNK1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.0734
all	GWASdb SNP-Phenotype Associations	1.0	0.029141
BCAN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.14498
GPS2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.62564
ICE2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.43479
MPP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.20856
PCM6	CCLE Cell Line Gene CNV Profiles	-1.0	-1.82068
USP7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.86281
NFE2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.6257
NCI-H226	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.855214
H3K27me3_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NEU3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.2469
GSE227698_2_v_4_g0s2_human	RummaGEO Gene Perturbation Signatures	1.0	null
496100330_PCx_possible Alzheimer's disease_no TBI_100+_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.70318
BAIAP2L2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.68041
SAP30_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SPTSSB	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.3408
Extravillous cytotrophoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.517
DAPK1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.43076
NDUFV2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.73625
POU4F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.2117
DIP2A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.15977
OCI-M2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.998667
cancer	GWASdb SNP-Disease Associations	1.0	0.04685
PBDC1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.7747
hsa-miR-628-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
RUNX3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.56995
PUM3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.74578
ATCAY	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.25933
BTBD7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.84212
NFKB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.951
496100287_TCx_no dementia_TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.28611
PRKCB	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.49644
TMEM86B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.53277
hsa-miR-512-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
496100466_PCx_probable Alzheimer's disease_no TBI_89_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.11597
CRLF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.8717
YAPC	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.27435
KARPAS-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.928902
DUX4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.5201
TLV/ENV coat polyprotein	InterPro Predicted Protein Domain Annotations	1.0	null
SDF2L1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.87546
PMC12586484-41598_2025_22484_MOESM2_ESM.xlsx-Supplementary_Table_1-Supplementary_Table_1_DEGs_in_ATOH8-depleted_EVT_ATOH8	Rummagene Transcription Factor Associations 2026	1.0	null
NCI-H1355	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.896334
TRIM56	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.86008
BRCA1	ENCODE Transcription Factor Targets	1.0	null
REL	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.4706
ZDHHC11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.98873
B3GALT9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.22986
SREBF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.2569
GSE189336_1_v_0_nitric oxide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
SIX2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.91708
Placenta cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.153
GSE128730_3_v_6_neratinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Choriocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.154
LSM7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.80479
WSCD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.91856
TDRD5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.16568
PRIMPOL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.07527
IFIT1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.15877
TAGLN2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.74889
PXDNL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.93826
MDAMB157	CCLE Cell Line Gene CNV Profiles	-1.0	-2.01627
H3K4me3_cardiac mesoderm_hg19_5	ENCODE Histone Modification Site Profiles	1.0	null
CPT2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.21135
LN18	CCLE Cell Line Gene CNV Profiles	-1.0	-2.28966
MEIS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.0339
ADPGK	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.0449
SLC7A6OS	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.1276
VPS18	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.47307
PGGHG	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.36625
RECQL4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.05858
TZM-bl cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.783
KARPAS299	CCLE Cell Line Gene CNV Profiles	-1.0	-1.82964
ISG20L2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.32056
FBXL18	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.84608
PSKH1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.55992
NPIPA7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.79092
ZNF410	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.20512
ZNF417	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.95296
TCL1A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.35353
RNF34	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.28943
Uterine epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.601
HCC1534	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Mutation Profiles	1.0	null
SLC39A1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.26453
GRIN3B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.67309
PDP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.00675
SLC38A7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.3514
TUT7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.04762
G2E3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.61599
TMEM250	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.53315
IgD immunoglobulin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.593
TMEM231	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.42097
LRRC8A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.38214
H2AFZ_fibroblast of lung_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
INO80E	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.97589
A549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19865
RAB35	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.78835
E2F7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.4921
abnormal respiratory system morphology	GWASdb SNP-Phenotype Associations	1.0	0.178554
NEK6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.43562
PPARGC1A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.28459
CSTF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.19146
MMUT	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.83024
NDST2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.05848
EPB41L2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.99914
SH3GL1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.99623
GCHFR	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.35845
ZFP14	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	59.0804
AGPAT4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.57895
Choriocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.611
GTPBP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.6003
hsa-miR-4744	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
PMC10534007-Table_2.xlsx-S5_unique_up_MSC_B-721_elements_included_exclusively_in_BFTC905_MSC_up_MSC	Rummagene Transcription Factor Associations 2026	1.0	null
abnormality of the respiratory system	GWASdb SNP-Phenotype Associations	1.0	0.1447
GSE102870_1_v_2_nr1h4_human	RummaGEO Gene Perturbation Signatures	-1.0	null
DU4475	CCLE Cell Line Gene CNV Profiles	1.0	1.48626
TMEM102	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.54326
GOLGA6L9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.26668
NCI-H187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.847489
SCNN1D	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.63805
hsa-miR-1470	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
ITGB1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.43173
NFS1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.59539
PPIL3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.5369
SU.86.86	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.11118
HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.2888
Retrotransposon nucleocapsid	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.154
SF3B3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.64251
RT4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.855214
FBXO3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.16476
RAD23B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.77434
Extravillous trophoblast cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.136
DDT	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.18419
SVIP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.17533
OCI-LY-10	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.961353
dexamethasone_homo sapiens_gpl6480_gds3946	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
GSE139455_2_v_5_stat3_human	RummaGEO Gene Perturbation Signatures	1.0	null
SSR1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.65482
RELT	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.74122
CSAD	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.86409
NCI-H2172	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.888368
NUP50	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.85684
TATDN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.065
IRF9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.30023
ANG	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.04961
NCI-H820	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05881
PLEKHH3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.11243
MAX	ENCODE Transcription Factor Targets	1.0	null
B3GALNT2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.68735
NKX2-2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.2941
PPP6R2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.17179
BLTP3A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.89614
TMD8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.19301
GSE207514,GSE207515_2_v_3_acetylcysteine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
LN-18	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.906653
JDP2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.1988
NCI-H23	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.865059
GSE139455_0_v_6_stat3_human	RummaGEO Gene Perturbation Signatures	-1.0	null
DDX49	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.57867
DAG1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.11101
ZNF667	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.4414
PMC12179525-mmc1.xlsx-Group_HNF4A_vs_Null_sign-Supplemental_Table_S1_Differentially_expressed_genes_in_HNF4A-transduced_cells_vs_Null_HNF4A	Rummagene Transcription Factor Associations 2026	1.0	null
PPARG	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.83096
U-2932	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.57897
POU4F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.3459
FAAH	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.20576
SUPT11	CCLE Cell Line Gene CNV Profiles	1.0	1.36942
Folu	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.461
VPS39	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.98919
UGT8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.07234
DUSP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.76436
ACOT8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.07038
Trophectoderm	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.412
496100555_TCx_no dementia_no TBI_87_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.26961
OVCA2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.7464
HSDL1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.56883
ALKBH6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.00435
GCIY	CCLE Cell Line Gene CNV Profiles	1.0	1.37452
RC3H2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.55941
UOK101	CCLE Cell Line Gene CNV Profiles	1.0	2.24187
POU2F2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.88771
MED12L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.3298
TMEM218	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.15671
SCPEP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.32212
MRPS14	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.06378
membrane part	GO Cellular Component Annotations 2015	1.0	null
GPATCH8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.32921
SIX1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.41612
TAPBPL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.50104
RPS28	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.17592
OCI-LY-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.72792
KLF8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.9518
PMC10335677-pbio.3002161.s009.xls-MLL_siRNA_DEGs-Ensembl_ID_KMT2A	Rummagene Transcription Factor Associations 2026	1.0	null
PRKCSH	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.61757
647V	CCLE Cell Line Gene CNV Profiles	1.0	2.51696
TIMM17B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.75066
XPO4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.81688
SLC35E2B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.99882
MAX_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PNN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.44244
LCMT2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.99876
PMC10794847-mmc6.xlsx-PIAS1_KD_up-Table_S5_Genes_differentially_expressed_with_PIAS1_knockdown_in_keratinocytes_cultured_in_the_differentiation_condition_Related_to_Figure_5_AR	Rummagene Transcription Factor Associations 2026	1.0	null
UACA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.15976
TAPBP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.29185
KAT7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.05578
SERINC3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.36153
NEMP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-4.52002
MRM2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.14409
SKNDZ	CCLE Cell Line Gene CNV Profiles	-1.0	-1.69732
HS 746T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.845796
COMMD2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.03588
RAVER2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.03953
TRPM4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.69857
PLCD3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.27922
Decidual cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.868
ZNF32	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.63099
NMU	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.32621
PRKRIP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.94399
NR4A2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.1776
YJU2B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.65728
hsa-miR-3185	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
G96	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.11033
Acquired immunodeficiency syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.728
ARMT1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.66715
CAOV4	CCLE Cell Line Gene CNV Profiles	1.0	1.60866
CTBP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.33791
SK-N-DZ	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.74971
MZF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.37816
GSE195514_0_v_1_stk25_human	RummaGEO Gene Perturbation Signatures	1.0	null
CD320	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.99887
SW 1417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.928902
BUB1B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.15915
NR2F2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.88045
SKMEL30	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
496100399_PCx_no dementia_no TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.48138
GNG11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.45212
MOLM16	CCLE Cell Line Gene CNV Profiles	-1.0	-1.5056
GSE229973_4_v_2_cisplatin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
BCAT2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.39934
PAPOLG	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.07098
PODXL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.94225
ITLN2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.363
Villous cytotrophoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.636
PI4K2B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.78769
METTL2A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-4.50846
USP14	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.94783
APEX1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.46298
NCOR1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.71854
VPS37B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.40876
KARS1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.62756
VSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.447
GSE128730_4_v_6_neratinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
496100492_TCx_probable Alzheimer's disease_no TBI_89_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.10537
NFKB1-27076634-BEAS2B-HUMAN-LUNG-INFLAMMATION	ChEA Transcription Factor Targets 2022	1.0	null
TAS2R5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.88722
SURF2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.41019
C11orf24	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.82446
ARRB2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.57688
RMG-I	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.963547
GSE147366_3_v_0_med13_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Trophoblast stem cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.6
CDPF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.67608
SARNP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.52877
hsa-miR-604	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
SMARCD3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.14499
Pavement epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.558
ZNF710	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.7631
TTC9C	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.25972
GSC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.6011
TBX6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.89185
ZEB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.3065
SNAI2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.4329
NCI-H1092	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.991622
SLC37A4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.82539
GSE193258,GSE193259_5_v_1_osimertinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
ZNF713	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.39699
SREBF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.9858
TEN	CCLE Cell Line Gene CNV Profiles	-1.0	-1.37554
BLOC1S3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.74497
HEK-293F cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.604
NR0B1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.32387
METTL18	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.25456
C2CD5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.54406
PC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.929908
PDXK	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.36826
AIDA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.32122
MRPS28	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.39965
EPLC-272H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.21351
NCIH2087	CCLE Cell Line Gene CNV Profiles	-1.0	-2.54715
FOXJ2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.45178
496100633_TCx_no dementia_TBI_84_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.2416
H3K4me3_Panc1_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
MTSS2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.98305
COV318	CCLE Cell Line Gene CNV Profiles	1.0	1.90197
CARF	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.47477
CHD4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.37094
MEAF6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.299
GOLGA6A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.38285
BAG3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.54388
SW 948	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.991622
hsa-miR-606	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
NCOR2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.68897
TRAPPC8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.42318
SLC20A1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.23619
CFAP418	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.62099
phenotypic abnormality	GWASdb SNP-Phenotype Associations	1.0	0.02917
ETV6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.71691
HCC4006	CCLE Cell Line Gene CNV Profiles	-1.0	-1.42208
PLEKHG6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.06449
MBD4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.10692
NEURL1B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.66833
SHOX	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.02157
MEF2C	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	83.2884
GSE196259_2_v_0_gcm1_human	RummaGEO Gene Perturbation Signatures	1.0	null
TEAD4_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Disease by infectious agent	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.544
STYX	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.6055
LRRC8B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.45431
OV-90	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.85341
Trophoblast stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.283
GSE80098,GSE80366_0_v_8_progesterone_human	RummaGEO Drug Perturbation Signatures	-1.0	null
FBN3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.52317
CD1D	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.69891
H3K4me1_Panc1_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
ZNF134	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.31698
TMEM170B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.83099
ACBD5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.48389
HEC-1-A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00084
COLO 699	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.16316
Decidua basalis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.641
KIAA0319L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.77165
ZNF540	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.12236
FKBP14	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.46693
HOMEZ	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.11931
496100669_FWM_no dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.98137
GSE186647,GSE217288_2_v_4_hnrnpc_human	RummaGEO Gene Perturbation Signatures	-1.0	null
USP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.26617
ZNF19	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.54565
ENTPD7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.72628
DCUN1D5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.82637
C10orf82	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.82599
hsa-miR-4667-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
BYSL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.08968
H3K4me3_Panc1_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
GSE115542_2_v_0_digoxin_human	RummaGEO Drug Perturbation Signatures	1.0	null
Cytotrophoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.07
MT-ND1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.76766
PAX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.7209
MYF6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.01681
RBIS	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.58344
MTR	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.23855
Cytotrophoblast cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.484
GFI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	50.1846
NINJ1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.71284
PQBP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.39178
NR1D1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.576
GSE148262,GSE150691_3_v_2_hdlbp_human	RummaGEO Gene Perturbation Signatures	1.0	null
H3C11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.28571
CTCF_GM12875_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SNX30	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.45506
POGZ	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.90425
PPP1R26	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.30015
F2R	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.01995
MPPE1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.59246
KCIMOH1	CCLE Cell Line Gene CNV Profiles	1.0	1.35472
FOSL2::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.214
CHL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.5427
PEPD	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.86401
PMC7914369-thnov11p3676s2.xls-BPTF-KOvsCtrl-AccID_BPTF	Rummagene Transcription Factor Associations 2026	1.0	null
SET-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.57696
MAP3K6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.56062
cellular_component	GO Cellular Component Annotations 2015	1.0	null
HGC-27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.11033
BRMS1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.06098
CRTC1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.60389
LCLC-97TM1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.890173
organ system cancer	GWASdb SNP-Disease Associations	1.0	0.049474
SLAIN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.58844
TBXT	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.9205
DPY19L1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.36612
Influenza	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.329
RABL3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.74282
Trophoblast giant cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.133
k1	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.898
TAF6L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.40173
AP1S2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.95469
TNIK	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.15701
SNTA1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.02202
RBBP9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.99937
GSE224294_4_v_2_ngly1_human	RummaGEO Gene Perturbation Signatures	1.0	null
GPT2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.62208
CHML	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.37986
MTF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.6585
TSC22D3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.69558
NIHOVCAR3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.61648
ZNF730	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.0564
NAGK	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.52559
BRF2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.23497
TMEM147	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.32698
Fc-gamma receptor I complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.547
NAB2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.05664
Disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.039
RAD51B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.82938
PTRH1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.43592
ENDOU	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.26006
ENDOG	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.50296
IgG B cell receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.54
RPS26	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.66306
GSE1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.02416
BNIP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.78836
NUDT19	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.20843
RERF-GC-1B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.75317
IgD B cell receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.609
NUDT12	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.54411
MRPL52	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.06382
LMAN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.8547
GSE224742_0_v_1_slc1a5_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE158320,GSE183351_2_v_1_lin28b_human	RummaGEO Gene Perturbation Signatures	1.0	null
FEZ2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.73834
AMDHD2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.10944
HMGXB3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.70038
FOSL2::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.4453
HNF1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.7201
GA10	CCLE Cell Line Gene CNV Profiles	1.0	1.3747
ABCB6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.60441
496100472_PCx_possible Alzheimer's disease_TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.06336
COG1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.95034
FOXF2	JASPAR Predicted Transcription Factor Targets	1.0	null
TP53	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.8529
NCI-H292	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.15156
XPR1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.95164
VMA21	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.84069
ZFP36L1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.28271
JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.1537
SLC25A36	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.25371
PMC11615365-41467_2024_54246_MOESM6_ESM.xlsx-KK47-Numb-KD_vs_Ctr-KD-geneSymbol_AR	Rummagene Transcription Factor Associations 2026	1.0	null
RFX3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.306
H3K4me3_NT2-D1_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
CLN6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.27907
YIPF6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.26022
PPP4R2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.99914
UNCX	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.03863
IPC-298	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11151
ZNF560	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.96584
SLC30A6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.43313
SCAMP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.28356
DTD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.82454
DPY19L3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.22615
POLDIP3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.10398
MOLM-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.37102
GSE242083,GSE242098_3_v_4_med1_human	RummaGEO Gene Perturbation Signatures	1.0	null
FOS::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.3166
FEZF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.52078
SMYD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.22957
MYH9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.30811
LZIC	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.39921
RAD18	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.99636
FOSL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.858
SRPK3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.90611
intrinsic component of membrane	GO Cellular Component Annotations 2015	1.0	null
Disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.431
NFKB1	JASPAR Predicted Transcription Factor Targets	1.0	null
CILP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.68263
GCIY	COSMIC Cell Line Gene CNV Profiles	1.0	3.12177
HCC1162	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.40805
THOC7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.17667
RL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.01368
FOS::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.4098
LRP12	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.55914
PLEKHA8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.23718
DEDD2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.66932
JAM3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.02177
SPI1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.12206
MAP1A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.92043
MED8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.54906
OVCA 420	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29898
C18orf25	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.91657
PMC7825356-8844261.f3.docx-266-ZNF766_ZNF766	Rummagene Transcription Factor Associations 2026	1.0	null
DDX19A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.81524
BATF	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.7083
WWTR1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.19063
Trophoblast cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.29
MAN1A2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.7068
ZNF384	ENCODE Transcription Factor Targets	1.0	null
SARS-BatSRBD_60Hour_23935999_GSE47961	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.5648
496100405_TCx_probable Alzheimer's disease_no TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.00715
PLEKHO1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.92628
AQP3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.09112
AP2B1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.53608
PDCL3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.27392
BNIP3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.38685
MSH2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.25366
GSE192860_0_v_1_trifluoperazine_human	RummaGEO Drug Perturbation Signatures	1.0	null
COPS4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.15546
RHOD	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.93812
FIGLA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.3834
PFKFB2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.62546
CADOES1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.98418
KYSE-270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04258
ZNF563	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.77398
MT-ND5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.83094
CDYL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.38166
H3K9me3_HepG2_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
NASP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.28812
H3K4me3_cardiac mesoderm_hg19_8	ENCODE Histone Modification Site Profiles	1.0	null
JEKO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.50589
BPGM	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.62144
DHRS7B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.07775
Endometrial Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
ZNF230	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.94657
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.37187
TGFBR1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.75271
GSE216273,GSE216292_14_v_6_palbociclib_human	RummaGEO Drug Perturbation Signatures	1.0	null
Syncytium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.722
NCI-H1623	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29898
ALS2CL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.71627
CCDC184	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.3152
KP4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04258
NCK1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.9989
FZD2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.60268
NCIH1975	CCLE Cell Line Gene CNV Profiles	1.0	1.34084
FAM50B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.66145
GSE154350_1_v_0_ascl2_human	RummaGEO Gene Perturbation Signatures	1.0	null
SETD2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.57249
CLN3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.05811
LY6E	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.92796
S100A6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.74397
IGSF8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.52711
PCDH18	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.0458
H3K27me3_K562_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PKNOX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.0344
EFR3A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.37531
SNU-484	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.890173
C2orf81	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.11998
TMEM265	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.58542
BACH2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.008
ASCL5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.42335
hsa-miR-3074-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
ZNF250	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.75837
NCI-H1975	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19865
HOXB4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.76823
TMEM92	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.7817
H3K4me3_cardiac mesoderm_hg19_7	ENCODE Histone Modification Site Profiles	1.0	null
ONECUT1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.35064
RBMS2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.59716
PELI1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.72011
TMEM201	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.67941
DNAJC16	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.71075
LUC7L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.01096
ZNF786	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.48806
ZNF384_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H520 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.644
UMRC2	CCLE Cell Line Gene CNV Profiles	1.0	1.97525
MUSTN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.62247
SPAG4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.46281
HOXC13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.4256
496100379_TCx_probable Alzheimer's disease_no TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.69809
PTBP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.17849
ANKRD54	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.69776
DETROIT 562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.991622
FOSL1::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.121
PIK3IP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.67045
GSE203329_2_v_1_mettl5_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE233679_12_v_9_nicotinamide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
HES2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.7053
TTYH3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.64705
Extravillous trophoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.419
Chorion	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.412
ONECUT3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	108.667
TCF25	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.3753
YD10B	CCLE Cell Line Gene CNV Profiles	-1.0	-1.35057
SK-OV-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.70818
496100508_PCx_possible Alzheimer's disease_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.84548
SETDB1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.28233
GGCX	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.84393
MEF2B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.0346
NUDT1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.92203
G44	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05881
MLLT10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.75645
HIPK2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.31477
EPS8L2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.55221
496100542_PCx_no dementia_no TBI_82_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.68058
SCAF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.53352
GSE169152_5_v_7_ibrutinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
GCLM	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.4701
MEIS3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.1133
ZNF680	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.5449
CRABP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.89782
Trophoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.987
MEC1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.10096
HCC1569	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.16316
GSE133329_2_v_3_trim28_human	RummaGEO Gene Perturbation Signatures	1.0	null
Placenta accreta	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.104
KU812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.90482
GSE133329_0_v_3_trim28_human	RummaGEO Gene Perturbation Signatures	1.0	null
BEX2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.88849
MEC2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.52705
MAF::NFE2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.0413
OVCA-8 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.174
PITX2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.81416
SNAPC4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.60247
CEP135	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.8198
AUP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.96111
HDAC7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.81461
TRIM6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.89866
H3K9me3_endothelial cell of umbilical vein_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
496100487_HIP_probable Alzheimer's disease_no TBI_89_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.55169
GPR63	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.5174
sc11	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.599
GOT2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.25211
HYCC1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.49202
SOX13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.8552
NSMCE4A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.27862
SETX	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.53163
EBC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.914058
GSE169152_5_v_2_ibrutinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
T-47D	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.865059
MAP3K21	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.64453
NCI-H1573	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.10362
AR-27623747-22RV1-MOUSE-PROSTATE-CARCINOMA	ChEA Transcription Factor Targets 2022	1.0	null
LRAT	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.2626
PITX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.6414
MCF10DCIS.COM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.835822
GSE205976,GSE205978_1_v_4_cep83_human	RummaGEO Gene Perturbation Signatures	1.0	null
Syncytiotrophoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.155
GORASP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.58064
ZNF571	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-4.35478
SPAG9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.39836
CEP152	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.09932
GSE173394_1_v_0_nfatc2_human	RummaGEO Gene Perturbation Signatures	1.0	null
UBE2T	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.20142
PIM3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.75782
TDRD10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.33201
Umbilical artery	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.686
496100661_PCx_no dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.37306
hsa-miR-4265	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
496100599_TCx_probable Alzheimer's disease_no TBI_95-99_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.11631
DES	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.26508
SEMA4C	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.35997
TDRD6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.9205
RPL28	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.68985
ZFP30	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.12362
TERT	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.11064
SLX1A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.06379
MAP3K9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.62736
kidney	GTEx Tissue Gene Expression Profiles	1.0	1.44499
neoplasm of the lung	GWASdb SNP-Phenotype Associations	1.0	0.921803
SETBP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.15779
H3K9ac_NT2-D1_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
integral component of membrane	GO Cellular Component Annotations 2015	1.0	null
MED13L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.34643
SLC25A15	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.24747
hsa-miR-4322	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
H3K9me3_CD14-positive monocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
PMC11615365-41467_2024_54246_MOESM6_ESM.xlsx-KK47-Numb-KD_vs_Ctr-KD-ensemblGeneId_AR	Rummagene Transcription Factor Associations 2026	1.0	null
SIRT6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.30091
FOXD2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	69.3299
PHOX2B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.02817
TWSG1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.50776
PXMP4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.19019
GSE147366_1_v_4_med13_human	RummaGEO Gene Perturbation Signatures	-1.0	null
NEUROG1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.5755
neoplasm	GWASdb SNP-Phenotype Associations	1.0	0.056198
thyroid	GTEx Tissue Gene Expression Profiles	1.0	1.19038
GAL3ST1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.38584
ELF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.76532
POU6F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.2793
JARID2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.32952
HCC4017	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.864279
ITM2A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.1914
JEG-3 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.159
MAP3K14	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.45406
RTCB	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.90048
FHDC1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.83137
RFX2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.94713
PA-TU-8988T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04258
PMC7592539-12885_2020_7456_MOESM4_ESM.xlsx-Sup_TableS3_LMS_del_genes_conf-19q13_43_TP63	Rummagene Transcription Factor Associations 2026	1.0	null
JHOS4	CCLE Cell Line Gene CNV Profiles	-1.0	-1.32969
TEAD4	ENCODE Transcription Factor Targets	1.0	null
hsa-miR-370	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
BeWo cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.694
THAP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.30878
ESR1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.61691
JEKO1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.58734
BTBD2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.08804
MRPL32	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.37707
NAA20	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.35186
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
FOXE1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	132.67
MARK4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.26855
hsa-miR-193a-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
FTC238	CCLE Cell Line Gene CNV Profiles	1.0	1.50752
Blastula	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.852
SOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.2098
SLC8A2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.54712
OSR2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.13754
496100350_FWM_no dementia_no TBI_95-99_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.02969
RTN4RL2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.36192
H3K4me3_WERI-Rb-1_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
EMX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.3467
ZNF416	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	47.171
UPP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.93948
RCBTB1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.49272
NR1D2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.606
GALNT3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.01449
H2BC12L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.23122
SATB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.6613
SLC22A1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.71729
H4C1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.42344
OVCAR-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.15031
RPS6KA5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.96038
AMBRA1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.73803
RORC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.9144
SKIC8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.79275
ZNF683	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.39293
Yellow fever	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.044
NCI-H889	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29898
GSE128730_4_v_5_neratinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
DPM2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.65991
SW 403	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04258
BmN cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.253
NRXN2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.56113
TSC22D4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.27262
SORL1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.5072
ELK1	JASPAR Predicted Transcription Factor Targets	1.0	null
ZNF384	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	233.499
RPL8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.43754
NAT9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.04823
KDM5B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.40401
NCIH1876	CCLE Cell Line Gene CNV Profiles	1.0	1.72125
FOXA1	JASPAR Predicted Transcription Factor Targets	1.0	null
COV413A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.5427
PMC10290283-biol-2022-0622-sm3.pdf-328-ZNF557_ZNF557	Rummagene Transcription Factor Associations 2026	1.0	null
TRMO	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.37019
KCI-MOH1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.27086
hsa-miR-2392	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
PRDM5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.6565
THOC6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.11673
496100419_TCx_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.06038
SLC25A33	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.207
SRRT	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.22526
MFGE8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.50723
ERP29	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.22333
RL	CCLE Cell Line Gene CNV Profiles	-1.0	-1.84708
FIS1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.22744
FOXF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.50464
NUMB	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.80672
USF1	ENCODE Transcription Factor Targets	1.0	null
PNISR	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.73249
CRLS1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.81708
CTAGE6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.9923
hsa-miR-4725-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
CACYBP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.00997
Conceptus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.381
RASGRP4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.0951
FLOT1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.3857
eGFP-JUND_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ZNF85	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.19892
NCI-H250	COSMIC Cell Line Gene CNV Profiles	1.0	3.12177
RBM41	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.50207
CPHXL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.57806
PDAP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.25968
NCIH1793	CCLE Cell Line Gene CNV Profiles	1.0	1.43167
XRCC2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.12926
ZNF766	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.432
TET1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.31397
SK-MEL-28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.834792
SK-MEL-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-3.41529
GSE248770_0_v_1_sorafenib_human	RummaGEO Drug Perturbation Signatures	1.0	null
LIN28B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.92717
HOXB5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.90726
496100358_HIP_no dementia_TBI_95-99_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.71525
Microvillus membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.804
KCTD3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.69071
CDX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.6974
ADAM17	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.1056
DDX20	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.6159
FYTTD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.66816
SPART	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.84878
ATIC	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.56334
USF1_ECC-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SUM 52PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07335
PRXL2A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.29396
PLAGL2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.45673
SW780	CCLE Cell Line Gene CNV Profiles	1.0	1.65209
TMEM126B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.67292
ELAC2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.13599
GSC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.6038
CKLF	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.32368
HEATR3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.77979
ZNF350	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.01598
HEK-293-EBNA cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.839
NIH:OVCAR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.4187
UBE2W	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.9113
MAFG::NFE2L1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.6999
PDX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.5508
CD276	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.89985
H3K9me3_fibroblast of lung_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
COQ3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.73815
GSE182185_0_v_1_pstk_human	RummaGEO Gene Perturbation Signatures	-1.0	null
ATP13A3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.06659
H3K9me3_mammary epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
ASCL1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.43215
TFAP2D	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.258
SCN5A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.42733
CENPQ	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.82082
HTR-8/SVneo cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.721
MTCH1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.39511
Te	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.552
DSEL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.2487
NPIPA3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.68293
PMC10861538-41467_2024_45669_MOESM7_ESM.xlsx-Sheet1-Supplementary_Data_4_DEGs_upon_KD_of_EVT_TFs_AR	Rummagene Transcription Factor Associations 2026	1.0	null
ARID1A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.72453
NEMF	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.9128
NCI-H1930	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.30961
CHCHD10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.40937
JMY	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.57921
RPMI-8866 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.664
Uterine epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.222
AIMP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.14429
MCHR1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.74625
TMEM101	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.06427
GLYCTK	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.8059
MRPL19	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.11983
COLO-704	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.835822
UM-UC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.929481
abnormality of the lung	GWASdb SNP-Phenotype Associations	1.0	0.178554
SLC27A4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.31322
NCI-H522	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.13576
CYLD	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.67762
POU2F2	JASPAR Predicted Transcription Factor Targets	1.0	null
PPIP5K1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.71387
NCI-H929	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.84097
Female reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.052
NPAS1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.21727
TRAPPC2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.17918
SLC27A3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.83132
H3K4me2_H1	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
RNF144A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.60598
ZNF526	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.62189
Labyrinthine zone	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.779
ZNF302	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.4329
b12	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.295
NEUROG3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.44755
TRRAP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.24293
TMEM221	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.31419
H2AC1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.43353
BRCA1_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CSNK1D	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.52118
ARL8A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.53148
GSE196259_2_v_3_gcm1_human	RummaGEO Gene Perturbation Signatures	1.0	null
ohh1.k	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.912
ZNF668	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.4828
GNA13	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.69803
ZNF587	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.0891
CRIM1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.50897
FN3KRP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.43573
OVCAR4	CCLE Cell Line Gene CNV Profiles	1.0	1.53007
NCI-N87	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.20085
RASSF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.48746
ZMYM1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.75331
NKX6-3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.5597
MOSMO	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.86251
COLO 794	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.912505
IKBKG	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.42339
MCAM	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.30849
NCI-H1581	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.17801
GSE147366_3_v_2_med13_human	RummaGEO Gene Perturbation Signatures	-1.0	null
APH1A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.37248
SAP30	ENCODE Transcription Factor Targets	1.0	null
Perturb_9793_KD_FOXO1_SRP192099	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	4.49798
DYNLT1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.30228
RASSF8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.04097
POU5F1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.40378
FICD	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.52566
DIP2B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.19186
POU4F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.0956
SNX5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.34185
Uterine wall	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.131
GSE96649_1_v_3_dexamethasone_human	RummaGEO Drug Perturbation Signatures	-1.0	null
PMC10170086-41598_2023_34519_MOESM6_ESM.xlsx-Shee2-The_differentially_expressed_genes_between_the_BARX2_high_and_BARX2_low_group_of_LIHC_patients_BARX2	Rummagene Transcription Factor Associations 2026	1.0	null
ZNF34	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.5353
LIME1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.75736
NPM3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.55266
IFNGR1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.74611
Portio vaginalis cervicis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.627
USP34	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.90361
hsa-miR-3182	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
ZDHHC6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.25148
CS	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.66443
CETN2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.06478
MDA-MB-157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.21348
TMEM200A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.52091
PMC12048643-44318_2025_409_MOESM3_ESM.xlsx-regulonTargets-ERG_ERG	Rummagene Transcription Factor Associations 2026	1.0	null
TOMM34	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.7393
FDXACB1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.14479
PIK3C2A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.81232
NCI-H2170	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29898
EXO5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-4.73662
HEPH	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.55673
SERPINE2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.41446
KAT6B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.59639
OARD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.41899
neoplasm by anatomical site	GWASdb SNP-Phenotype Associations	1.0	0.058294
CHAGO-K-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.15156
Perturb_5600_KD_ESCCAL1_SRP259187	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-20.0
CLEC2D	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.81824
HGC27	CCLE Cell Line Gene CNV Profiles	-1.0	-1.43145
STRAP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.3869
FOSB::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.7322
BARHL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.4594
GATC	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.57094
TBC1D4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.26818
KCNC4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.04627
PARPBP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.35145
KDM5A_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
VCX3B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.7785
Skin - Sun Exposed (Lower leg)	GTEx Tissue Gene Expression Profiles 2023	1.0	7.15425
HES6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.7606
TCF21	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.81716
PCBP3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.00989
CNN2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.90845
RPAIN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.53795
EBF4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.64069
AVPI1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.75692
Reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.067
BLOC1S6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.91553
ZNF471	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.49761
H2AFZ_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ANTKMT	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.47012
Villous trophoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.487
CAMK2G	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.87096
GSE147283_1_v_3_arid1a_human	RummaGEO Gene Perturbation Signatures	-1.0	null
PMC12356745-12015_2025_10896_MOESM2_ESM.pdf-846-ENSG00000198538_ZNF28	Rummagene Transcription Factor Associations 2026	1.0	null
CHRNB2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.20512
CROCC	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.19607
Testicular cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.201
ZNF181	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.85926
STEAP3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.3331
H2AFZ_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Chorionic cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.611
HCC78	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23572
SERBP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.70989
Choriocarcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.202
ZNF853	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.47111
GSE217873_1_v_0_nusap1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
PMC8567280-EMBR-22-e53014-s008.xlsx-PC3_TIP5_bound_promoter-Unnamed_4_BAZ2A	Rummagene Transcription Factor Associations 2026	1.0	null
NMD3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.54015
J82	CCLE Cell Line Gene CNV Profiles	1.0	1.64996
RNF145	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.38637
TK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.847489
ING4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.66328
EIF4G1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.91695
GSE215461_0_v_1_topotecan_human	RummaGEO Drug Perturbation Signatures	1.0	null
SPZ1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.2995
GSE211215_1_v_0_pemetrexed_human	RummaGEO Drug Perturbation Signatures	1.0	null
COV362	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.46306
SOX10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.20044
PMC12356745-12015_2025_10896_MOESM2_ESM.pdf-397-ZNF28_ZNF28	Rummagene Transcription Factor Associations 2026	1.0	null
C1RL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.28576
KP-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.864279
HS 936.T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.16316
ZNF722	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.77897
RERF-LC-OK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.991622
COV318	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.05477
SCML1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.50818
ZR-75-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.917019
Chorionic villus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.51
HSF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.4148
ARHGEF25	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.19592
RELA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.1667
LXF-289	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.16316
L1236	CCLE Cell Line Gene CNV Profiles	1.0	1.37399
EEF2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.67512
DCAF13	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.75133
TEAD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.9797
PLCG1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.12887
KARPAS-422	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24779
COV362	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33501
NCIH1781	CCLE Cell Line Gene CNV Profiles	-1.0	-1.57134
TRIM44	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.47735
TP53	JASPAR Predicted Transcription Factor Targets	1.0	null
BRK1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.08346
NCI-H1437	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.864279
ZNF410	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.5118
ZNF428	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.3534
GLB1L2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.94682
NCIH1930	CCLE Cell Line Gene CNV Profiles	1.0	1.9766
GSE133329_1_v_3_trim28_human	RummaGEO Gene Perturbation Signatures	1.0	null
Cervical mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.211
496100347_PCx_no dementia_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.51874
NCIH854	CCLE Cell Line Gene CNV Profiles	1.0	2.13699
Crfk	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.531
ERMP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.78367
SW 780	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.983604
ZNF320	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.88534
ADAMTS8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.02277
H3K36me3_Pancreatic Islets	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
COX11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.29694
VAX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.4052
ZNFX1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.19589
SEC16A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.97598
SH2D3A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.36544
ATF3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.00725
ISLR	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.78275
GPC2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.45414
P4HB	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.0924
ASPHD2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.05433
H3K4me3_H7_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
PCDHB15	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.71108
MSI1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.28338
PMC5687749-pone.0188272.s005.xlsx-Supplementary_Table_3-Supplementary_Table_3_Differentially_Expressed_Genes_in_Common_between_AFX_compared_to_both_Keratinocytes_and_Fibroblasts_FOXO4	Rummagene Transcription Factor Associations 2026	1.0	null
EMC1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.53761
MEF2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.331
DUSP9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.02006
PMC10335677-pbio.3002161.s009.xls-MLL_siRNA_DEGs-Ensembl_Symbol_KMT2A	Rummagene Transcription Factor Associations 2026	1.0	null
TPRG1L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.21875
MEF2D	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.2139
RIOK1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.4741
EFNA1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.24456
NTF4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.69082
YARS1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.82637
GSE238018_3_v_4_mxra8_human	RummaGEO Gene Perturbation Signatures	-1.0	null
SUPT16H	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.76573
SMC3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.61464
SNU-668	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.62021
GSE210662_3_v_1_znf165_human	RummaGEO Gene Perturbation Signatures	-1.0	null
F12	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.67726
GTF2H5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.76924
UBE2R2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.36596
VASH1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.81614
RAB11FIP5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.32628
KLF13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	77.1549
JADE3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-4.95961
RNASEH1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.7737
pre-eclampsia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.441
TEAD1	JASPAR Predicted Transcription Factor Targets	1.0	null
TMEM74B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.7395
JTB	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.84568
RASGRP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.99282
FCGRT	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.95623
hsa-miR-4763-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
GSE139455_2_v_3_stat3_human	RummaGEO Gene Perturbation Signatures	1.0	null
RCM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.21351
GDF15	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.29917
Viral infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.602
CHAC1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.84205
NCI-H1299	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.941051
RAB42	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.35251
ZSCAN32	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.8728
Cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.044
GORAB	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.04719
BCL2L2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.58168
H4C16	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.93741
COR-L279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.833612
GSE128730_4_v_1_neratinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
ZNF816	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.17388
TRIT1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.48413
NKX2-4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.3892
AAR2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.26333
NCIH1581	CCLE Cell Line Gene CNV Profiles	-1.0	-1.40309
SKIC3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.08281
CTCF	ENCODE Transcription Factor Targets	1.0	null
GSE139455_4_v_6_stat3_human	RummaGEO Gene Perturbation Signatures	-1.0	null
JRK	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.72508
Decidua	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.218
RWDD2B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.37059
MBD3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.53955
NPPC	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.09419
HEL	CCLE Cell Line Gene CNV Profiles	1.0	1.36437
ANKRD40	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.74027
SNAPIN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.38096
USF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.8498
MYOD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.8509
hsa-miR-4296	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
HNRNPUL1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.08154
SKM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.62291
GSE196505,GSE196507_1_v_2_kdm2b_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE139455_7_v_6_stat3_human	RummaGEO Gene Perturbation Signatures	-1.0	null
WRNIP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.02755
GSE154936_3_v_4_remdesivir_human	RummaGEO Drug Perturbation Signatures	-1.0	null
PLS3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.99186
Human immunodeficiency virus infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.823
disease	GWASdb SNP-Disease Associations	1.0	0.025492
respiratory system cancer	GWASdb SNP-Disease Associations	1.0	0.331077
MNT	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.39309
WBP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.27656
PDX1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.58582
UCHL1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.5147
Perturb_8009_KD|OE_PSAT1|TP53_SRP406950	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-20.0
ZNF354A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	55.4909
GSE140997_4_v_7_nsun6_human	RummaGEO Gene Perturbation Signatures	-1.0	null
SEC24A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.87207
GSE147366_3_v_5_med13_human	RummaGEO Gene Perturbation Signatures	-1.0	null
LTBP3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.38235
UBE2I	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.58814
KDM5A	ENCODE Transcription Factor Targets	1.0	null
NFIC::TLX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.0625
SMPD4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.04766
SNX1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.00277
GSE207863_0_v_1_hdac5_human	RummaGEO Gene Perturbation Signatures	1.0	null
ARMC7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.34872
UBE3C	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.79864
PET100	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.10244
A172	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.20085
LSS	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.36044
RORB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.8019
CASZ1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.70972
MARK2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.32543
TTL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.41177
HPAC	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19712
Female reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.084
SLC25A3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.4549
TAF4B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.59989
NCI-H1838	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.865059
DDX23	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.23791
Placenta disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.154
RERF-LC-KJ	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19712
NCIH929	CCLE Cell Line Gene CNV Profiles	-1.0	-1.99648
RL95-2 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.358
F8A1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.21086
BRCA1-C complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.577
PORCN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.54394
CLDN7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.24869
Reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.103
MAX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.6259
496100354_PCx_dementia_no TBI_84_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.99917
ESPNL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.42107
CCT5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.42327
RAPGEF2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.77738
PGP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.64202
Mulchandani-Bhoj-Conlin syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.34
FAM120AOS	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.75788
RI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0706
dh33	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.686
WASF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.57667
TEX45	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.13809
CDX2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.29339
PRRX1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.69979
CCDC112	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.30268
LAGE3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.66501
DPYSL4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.4994
disease of cellular proliferation	GWASdb SNP-Disease Associations	1.0	0.04608
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.28975
SKM1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.51573
SRSF6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.06456
PMC10273062-JCMM-27-1708-s001.xlsx-Sheet_1-BRCA_AND_UCEC_NOT_CESC_NOT_UCS_NR4A2	Rummagene Transcription Factor Associations 2026	1.0	null
PTDSS2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.85252
H4	CCLE Cell Line Gene CNV Profiles	1.0	1.47411
RBM5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.84485
Integrin alpha4-beta7 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.512
HT1376	CCLE Cell Line Gene CNV Profiles	-1.0	-1.5067
GSE109140_2_v_3_valproic acid_human	RummaGEO Drug Perturbation Signatures	1.0	null
PMC8507136-12935_2021_2224_MOESM5_ESM.xlsx-CREB1_upregulated_RRHO_list-RRHO_concordant_degree_CREB1	Rummagene Transcription Factor Associations 2026	1.0	null
HNRNPF	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.14907
TNPO3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.86957
Amyotrophic lateral sclerosis type 5	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.303
FOXD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	166.305
MYO18A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.34277
CENPM	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.29808
GSE227698_5_v_3_g0s2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
ANKRD39	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.67534
CHKA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.67467
HCC1937	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.982489
H2BC13	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.55219
ZFP92	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.23625
SDHC	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.65443
ITFG2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.46308
NFIB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.3442
POLR1A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.7009
POU3F3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.45436
POR	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.65324
OCILY3	CCLE Cell Line Gene CNV Profiles	1.0	3.2803
NCIH1395	CCLE Cell Line Gene CNV Profiles	1.0	1.78191
E2F2-33952803-PATIENT-HUMAN-SYNOVIUM	ChEA Transcription Factor Targets 2022	1.0	null
Testicular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.15
496100426_PCx_no dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.74479
RT4	CCLE Cell Line Gene CNV Profiles	1.0	2.14416
SU8686	CCLE Cell Line Gene CNV Profiles	-1.0	-1.35713
hsa-miR-504	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
hsa-miR-3120-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
PBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.8637
DHX58	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.5791
ZNF638	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.32424
Villous syncytiotrophoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.018
CRABP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.91348
UFSP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.84138
KTN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.71381
OSGEPL1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.07692
ZFYVE26	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.452
Rostral migratory stream	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.337
CCDC106	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.85516
S100A14	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.95286
RCE1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-4.47132
EXOSC2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.90244
NHLRC3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.74806
neoplasm of the respiratory system	GWASdb SNP-Phenotype Associations	1.0	0.330356
ALKBH5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.75387
CNEP1R1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.6736
ZNF382	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.18596
Disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.175
PCNX4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.41109
NCI-H146	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.99545
TEAD2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.4483
RORA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	49.3322
CALM3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.19596
ONECUT1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.3648
KHDC1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.22058
ZNF623	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.52461
HCC515	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.941051