association dataset threshold value standardized value smoothmuscle_8b HPA Tissue Sample Gene Expression Profiles -1.0 -0.951127 FF-28-ES17_0.1uM NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles 1.0 0.248553 GTEX-PW2O-1726-SM-2S1OO GTEx Tissue Sample Gene Expression Profiles -1.0 -0.942998 RPUSD1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.5014 GTEX-RVPU-2426-SM-2XCAR GTEx Tissue Sample Gene Expression Profiles -1.0 -1.17032 INPP4A CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.35425 GTEX-SN8G-0226-SM-4DM6B GTEx Tissue Sample Gene Expression Profiles 1.0 1.10396 Nr1h3::Rxra JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 23.6887 ND-39-PO34_10uM NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles -1.0 -0.602164 H3K4me1_thymus_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null GTEX-TMZS-0001-SM-3P61Q GTEx Tissue Sample Gene Expression Profiles -1.0 -0.927434 GTEX-P44H-1126-SM-48TBU GTEx Tissue Sample Gene Expression Profiles 1.0 1.10051 CCDC152 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.61193 DHFR2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.89299 EXOSC9 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.25352 GTEX-U4B1-0326-SM-3DB8K GTEx Tissue Sample Gene Expression Profiles -1.0 -1.03727 DV90 CCLE Cell Line Gene CNV Profiles -1.0 -1.81893 PMC7161353-supp_073353.119_Supplemental_Tab_S8.xlsx-LUAD_HRGs_correlation_to_MBNL2-gene_name_MBNL2 Rummagene Transcription Factor Associations 2026 1.0 null CA-75-HA22_10uM NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles -1.0 -0.238614 GSE149075_6_v_9_foxa2_mouse RummaGEO Gene Perturbation Signatures 1.0 null CDKN1A CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.49067 GTEX-OXRP-0006-SM-2I3FN GTEx Tissue Sample Gene Expression Profiles -1.0 -1.26882 GSE147876,GSE147877_2_v_7_enzalutamide_human RummaGEO Drug Perturbation Signatures 1.0 null TTLL3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.5757 dorsolateral prefrontal cortex_19 pcw_F_12885 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq 1.0 1.36077 ATP6V1B2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.16424 ECC12 CCLE Cell Line Gene CNV Profiles 1.0 1.32804 N6AMT1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.50084 IPO7 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.99898 HOXA6 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.9057 ALG3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.58974 CAMSAP2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.27397 GTEX-OIZH-3026-SM-3NB1G GTEx Tissue Sample Gene Expression Profiles -1.0 -0.990366 PL45 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles -1.0 -2.00017 GSE222047_0_v_1_imidazole_human RummaGEO Drug Perturbation Signatures 1.0 null BD-61-OO16_10uM NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles 1.0 0.227153 LRCH3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.64206 ATRIP CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.58331 GTEX-QLQW-0126-SM-447BK GTEx Tissue Sample Gene Expression Profiles 1.0 1.08817 PMC4387713-supp_gad.255984.114_Table_S5.xlsx-S5E-Down_H3K27me3_DPY30_KD-Unnamed_12_AR Rummagene Transcription Factor Associations 2026 1.0 null GSE183994_3_v_0_scml2_mouse RummaGEO Gene Perturbation Signatures 1.0 null NTERA-2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Mutation Profiles 1.0 null TMC8 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.21365 GSE242290_3_v_2_glutathione_human RummaGEO Drug Perturbation Signatures -1.0 null GTEX-S3XE-1526-SM-4AD5A GTEx Tissue Sample Gene Expression Profiles 1.0 1.6799 GTEX-OHPM-0326-SM-33HCA GTEx Tissue Sample Gene Expression Profiles -1.0 -1.55679 PMC12048643-44318_2025_409_MOESM3_ESM.xlsx-regulonTargets-FOS_FOS Rummagene Transcription Factor Associations 2026 1.0 null LOU-NH91 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles 1.0 1.26381 NCI-H187 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles 1.0 0.895038 POU2F1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.04159 GRK6 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.30278 HCC38 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.04994 ADPGK CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.16777 MRPL2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.40652 POLR2A_cortical plate_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE166004_3_v_2_pld1_mouse RummaGEO Gene Perturbation Signatures -1.0 null ATF7 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.05576 TOP1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.32238 GTEX-OOBK-0625-SM-3LK5P GTEx Tissue Sample Gene Expression Profiles -1.0 -0.88258 PRMT7 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.66408 CCDC69 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.99977 KIF21B CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.45203 NCIH1838 CCLE Cell Line Gene CNV Profiles -1.0 -2.1458 TP53INP2_KO_GSE54917_384_mouse_Quadriceps muscle GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null BLM CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.23343 RET_mutant_23_GDS3319 GEO Signatures of Differentially Expressed Genes for Kinase Perturbations -1.0 -1.55428 GSE235066_4_v_0_cisplatin_human RummaGEO Drug Perturbation Signatures 1.0 null primary somatosensory cortex (area S1, areas 3,1,2)_11 yrs_F_12289 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq -1.0 -1.8495 Perturb_3998_KD_RIOK3_SRP116196 PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 -20.0 SIG-M5 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles 1.0 1.49848 orbital frontal cortex_2 yrs_F_12979 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq 1.0 1.71142 IF-87-AU84_10uM NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles -1.0 -0.334266 GTEX-X5EB-2226-SM-46MW4 GTEx Tissue Sample Gene Expression Profiles 1.0 1.1718 anterior (rostral) cingulate (medial prefrontal) cortex_19 pcw_F_12885 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq 1.0 1.19687 TRAK2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.098 SYNDIG1L CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.61782 H3K4me1_erythroblast_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null POLR2A_testis_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null LHB CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.29919 GTEX-U3ZM-1226-SM-3DB9G GTEx Tissue Sample Gene Expression Profiles -1.0 -1.08651 PMC7021759-41467_2020_14682_MOESM10_ESM.xlsx-downregulated_genes-Table_S7_Dowregulated_genes_in_SKNMM_and_U2OS_cells_with_MYCN_induction_MYCN Rummagene Transcription Factor Associations 2026 1.0 null GTEX-POMQ-0008-SM-48TE7 GTEx Tissue Sample Gene Expression Profiles -1.0 -1.17996 GTEX-S33H-0126-SM-4AD62 GTEx Tissue Sample Gene Expression Profiles 1.0 1.51842 amygdaloid complex_17 pcw_F_12880 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq 1.0 1.25321 H3K4me1_heart_mm9_2 ENCODE Histone Modification Site Profiles 1.0 null heart_6b HPA Tissue Sample Gene Expression Profiles -1.0 -1.35992 GTEX-S341-1326-SM-4AD72 GTEx Tissue Sample Gene Expression Profiles 1.0 0.872389 small intestine HPA Tissue Protein Expression Profiles 1.0 0.931102 GTEX-QDVN-0526-SM-48TZ4 GTEx Tissue Sample Gene Expression Profiles 1.0 0.970037 GTEX-QLQ7-0008-SM-447AW GTEx Tissue Sample Gene Expression Profiles -1.0 -0.990889 GTEX-T2IS-0126-SM-4DM6O GTEx Tissue Sample Gene Expression Profiles 1.0 0.909855 RUNX3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 17.7265 MCM2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.46929 PLBD1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.27447 COX10 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.85333 EFM-192B Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.23056 NCIH1573 DepMap CRISPR Gene Dependency 1.0 2.07288 GSE103122_0_v_1_riok3_human RummaGEO Gene Perturbation Signatures -1.0 null GSE206226_2_v_1_cisplatin_human RummaGEO Drug Perturbation Signatures 1.0 null CACUL1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.4523 NIPA1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.30443 H3K4me1_brain_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null GTEX-OXRK-1826-SM-2HMJE GTEx Tissue Sample Gene Expression Profiles -1.0 -0.955613 GTEX-RM2N-1326-SM-48FCW GTEx Tissue Sample Gene Expression Profiles 1.0 1.69176 DPRX JASPAR Predicted Human Transcription Factor Targets 2025 1.0 17.6605 LS DepMap CRISPR Gene Dependency 1.0 2.5913 GSE95077_1_v_4_amiloride_human RummaGEO Drug Perturbation Signatures 1.0 null JUN-27471255-CHONDROCYTES-MOUSE-RIB ChEA Transcription Factor Targets 2022 1.0 null PMC8569982-41065_2021_205_MOESM1_ESM.xlsx-mono_THP1_a2b_tpm1-gene_GLI2 Rummagene Transcription Factor Associations 2026 1.0 null GTEX-TML8-1826-SM-32QOR GTEx Tissue Sample Gene Expression Profiles -1.0 -0.961154 GSE193258,GSE193259_2_v_6_osimertinib_human RummaGEO Drug Perturbation Signatures 1.0 null GSE203158_5_v_15_aire_mouse RummaGEO Gene Perturbation Signatures 1.0 null FN1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.82375 inferolateral temporal cortex (area TEv, area 20)_21 yrs_F_13057 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq -1.0 -1.34116 GSE165334_2_v_0_dabrafenib_human RummaGEO Drug Perturbation Signatures -1.0 null PMC6684323-NIHMS1532201-supplement-Table_S6.xlsx-LPS-Sup_Table_6C_Delta_PVE_among_PopDE_genes_LPS_PopDE_FDR_0_2_IRF6 Rummagene Transcription Factor Associations 2026 1.0 null ME-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles 1.0 1.7041 GTEX-T5JC-1526-SM-4DM68 GTEx Tissue Sample Gene Expression Profiles 1.0 1.21743 Viral Load Result DisGeNET Gene-Phenotype Associations 1.0 null LRRC32 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.52963 GSE60217_1_v_8_inosine_human RummaGEO Drug Perturbation Signatures -1.0 null H3K4me1_kidney_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null ISY1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 4.16228 SUPHD1 CCLE Cell Line Gene CNV Profiles -1.0 -1.91103 BB-87-SF89_1uM NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles -1.0 -0.300216 ZC3HAV1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.98708 RFX2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 25.0892 GSE214212_2_v_0_chd6_human RummaGEO Gene Perturbation Signatures -1.0 null SLC16A3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.66662 GTEX-S4Q7-0008-SM-3NM8A GTEx Tissue Sample Gene Expression Profiles -1.0 -1.00141 GSE197630_1_v_0_ruvbl1_human RummaGEO Gene Perturbation Signatures 1.0 null H3K27me3_liver_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null DMS79 CCLE Cell Line Gene CNV Profiles 1.0 1.41064 TMEM165 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.52885 GZF1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.21269 GTEX-Q2AH-1526-SM-48TZG GTEx Tissue Sample Gene Expression Profiles 1.0 1.80648 VMRC-LCD Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.32318 GSE138741,GSE138743_0_v_1_lin28b_human RummaGEO Gene Perturbation Signatures 1.0 null GSE206729_2_v_1_trps1_human RummaGEO Gene Perturbation Signatures 1.0 null H3K4me1_spleen_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null GTEX-WH7G-0526-SM-3NMBI GTEx Tissue Sample Gene Expression Profiles 1.0 0.845247 POLR2A_MEL cell line_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null spleen HPA Tissue Gene Expression Profiles 1.0 0.954749 SK-MM-2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles 1.0 1.94008 FARP1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.56948 GSE217552_3_v_0_fisetin_human RummaGEO Drug Perturbation Signatures 1.0 null NRBF2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.25283 GTEX-N7MS-0011-R11A-SM-2HMJS GTEx Tissue Sample Gene Expression Profiles 1.0 0.915514 496100646_TCx_probable Alzheimer's disease_no TBI_82_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.06868 GSE226584,GSE226589_3_v_0_ezh2_human RummaGEO Gene Perturbation Signatures 1.0 null NB-80-IM48_10uM NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles -1.0 -0.635339 GTEX-WWYW-0926-SM-3NB2Z GTEx Tissue Sample Gene Expression Profiles 1.0 0.865106 RFX5 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 17.5902 DPYSL5 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.33538 GTEX-X4XX-0126-SM-3NMC2 GTEx Tissue Sample Gene Expression Profiles 1.0 1.01444 RBM8A CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.82079 NCI-H2081 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles 1.0 1.00092 CSKMT CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.52496 GSE149760_3_v_5_elof1_human RummaGEO Gene Perturbation Signatures 1.0 null GSE130437_2_v_3_palbociclib_human RummaGEO Drug Perturbation Signatures 1.0 null CTC1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.74448 GTEX-X4XY-1026-SM-46MVX GTEx Tissue Sample Gene Expression Profiles 1.0 0.896316 GTEX-UJMC-0008-SM-4IHKK GTEx Tissue Sample Gene Expression Profiles -1.0 -1.02868 PMC12224929-ADVS-12-2416784-s006.xlsx-DEG_circGLIS3_KD-Unnamed_6_AR Rummagene Transcription Factor Associations 2026 1.0 null PIP4K2C CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.519 GOLGA6C CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.41229 POLR2AphosphoS2_myocyte_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null HBP1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.34311 CLPTM1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.52287 SNF8 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.08996 GSE216043_11_v_9_cisplatin_human RummaGEO Drug Perturbation Signatures 1.0 null HT-55 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.61899 SLC25A34 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.85558 HEC251 DepMap CRISPR Gene Dependency 1.0 2.45529 GTEX-WL46-0126-SM-3TW8I GTEx Tissue Sample Gene Expression Profiles 1.0 0.843688 KNS42 DepMap CRISPR Gene Dependency 1.0 2.23649 mediodorsal nucleus of thalamus_1 yrs_F_12830 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq -1.0 -1.08115 TXNL4A CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.34297 UPF2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.2626 UM-UC-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.949768 GNL2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.86045 primary visual cortex (striate cortex, area V1/17)_37 pcw_M_263195015 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq 1.0 0.979336 ZNF714 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.0488 GTEX-XGQ4-0126-SM-4AT4H GTEx Tissue Sample Gene Expression Profiles 1.0 1.27532 Zfx JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 52.9332 GTEX-NL4W-0011-R2a-SM-2I5GV GTEx Tissue Sample Gene Expression Profiles -1.0 -0.844057 Perturb_5600_KD_ESCCAL1_SRP259187 PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 -20.0 KIAA1671 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.73023 STC2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.48355 NCI-H146 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.09909 primary motor-sensory cortex (samples)_19 pcw_F_12885 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq 1.0 0.905899 NR4A3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.57559 GTEX-OIZI-0626-SM-2XCEH GTEx Tissue Sample Gene Expression Profiles -1.0 -2.58847 GSE182680,GSE182683_5_v_9_dexamethasone_human RummaGEO Drug Perturbation Signatures 1.0 null GTEX-T5JW-1826-SM-3GAE1 GTEx Tissue Sample Gene Expression Profiles -1.0 -1.06957 pancreas_6b HPA Tissue Sample Gene Expression Profiles -1.0 -1.63893 Kdm1a_KD_GDS5055_274_mouse_3T3-L1 preadipocytes - 24h GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null FA-36-VA24_10uM NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles -1.0 -0.303134 GTEX-QV31-1426-SM-2S1QD GTEx Tissue Sample Gene Expression Profiles -1.0 -4.16963 GTEX-RNOR-1426-SM-48FDJ GTEx Tissue Sample Gene Expression Profiles 1.0 1.1568 GTEX-T6MN-2026-SM-4DM7L GTEx Tissue Sample Gene Expression Profiles 1.0 2.47126 GSE189859,GSE189861_1_v_2_idh1_human RummaGEO Gene Perturbation Signatures 1.0 null NCI-H2452 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.954128 SREBF2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.8847 ARFIP2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.94123 primary auditory cortex (core)_19 yrs_F_12832 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq -1.0 -0.982581 primary visual cortex (striate cortex, area V1/17)_1 yrs_F_12830 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq -1.0 -1.01328 XC-81-LR46_10uM NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles -1.0 -0.282094 posterior (caudal) superior temporal cortex (area 22c)_17 pcw_F_12880 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq 1.0 0.943825 CHP-212 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.93458 Olig2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 17.8375 GSE197630_1_v_0_enzalutamide_human RummaGEO Drug Perturbation Signatures 1.0 null GSE206226_0_v_1_cisplatin_human RummaGEO Drug Perturbation Signatures 1.0 null AP5S1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.45376 DCLRE1A CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.82504 GTEx Lung 20-29 vs 50-59 GTEx Tissue-Specific Aging Signatures 1.0 4.52386 PMC7498599-41467_2020_18508_MOESM11_ESM.xlsx-4cell_CTCF-Unnamed_3_CTCF Rummagene Transcription Factor Associations 2026 1.0 null GSE163240_2_v_0_enzalutamide_human RummaGEO Drug Perturbation Signatures -1.0 null GSE224311_3_v_0_chaetocin_human RummaGEO Drug Perturbation Signatures -1.0 null SYNGR3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.42307 GSE156708_1_v_2_fbxo11_human RummaGEO Gene Perturbation Signatures 1.0 null GTEX-QVJO-0011-R10A-SM-2S1QJ GTEx Tissue Sample Gene Expression Profiles -1.0 -0.993724 SGO1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.32608 GTEX-X5EB-0426-SM-46MVY GTEx Tissue Sample Gene Expression Profiles 1.0 1.06098 KLHL9 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.33318 GTEX-NL4W-0011-R11A-SM-2I3DW GTEx Tissue Sample Gene Expression Profiles 1.0 1.1926 GSE200982_0_v_2_plac8_human RummaGEO Gene Perturbation Signatures -1.0 null GTEX-P4QR-0726-SM-2I5GO GTEx Tissue Sample Gene Expression Profiles -1.0 -1.62134 GTEX-XMD1-0011-R11A-SM-4AT5J GTEx Tissue Sample Gene Expression Profiles 1.0 1.47 GTEX-NPJ8-0007-SM-2D7VX GTEx Tissue Sample Gene Expression Profiles -1.0 -2.09009 PMC11781671-ppat.1012897.s015.xlsx-Tab_S1-S1_Table_The_detailed_information_of_DEGs_in_Huh7_cells_post_MSX1_overexpression_MSX1 Rummagene Transcription Factor Associations 2026 1.0 null FHIP2A CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.29821 mediodorsal nucleus of thalamus_37 pcw_M_263195015 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq 1.0 1.14693 GTEX-RVPU-0005-SM-2TF6L GTEx Tissue Sample Gene Expression Profiles -1.0 -1.76264 GTEX-TKQ1-0926-SM-4DXU2 GTEx Tissue Sample Gene Expression Profiles 1.0 2.03411 Nr1h4 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 16.526 NRL JASPAR Predicted Human Transcription Factor Targets 2025 1.0 22.1079 VRK3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.68677 AKR1B1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.08215 Ascl2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 33.5631 ZNF546 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.65867 CEP85 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.19249 TJP2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.36916 GTEX-SJXC-0526-SM-2XCFG GTEx Tissue Sample Gene Expression Profiles -1.0 -1.17441 GTEX-UPK5-1126-SM-3GAEJ GTEx Tissue Sample Gene Expression Profiles -1.0 -0.849416 GSE226249_2_v_8_pirfenidone_human RummaGEO Drug Perturbation Signatures 1.0 null GTEX-PWCY-1426-SM-48TCT GTEx Tissue Sample Gene Expression Profiles 1.0 1.32103 GSE236504,GSE236505_0_v_1_atmin_human RummaGEO Gene Perturbation Signatures 1.0 null G84 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles 1.0 0.858448 PLEKHN1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 4.45841 MDA-MB-175-VII Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.74154 VPS16 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.04699 496100592_FWM_no dementia_no TBI_89_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.09238 TBX18 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 19.0341 GTEX-SUCS-1326-SM-4DM5T GTEx Tissue Sample Gene Expression Profiles 1.0 1.93335 H3K27me3_brain_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null KF-18-RY71_10uM NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles -1.0 -0.419293 POU5F1-18347094-MESC-mouse ChEA Transcription Factor Binding Site Profiles 1.0 null CF-87-AS90_10uM NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles -1.0 -0.232766 DYNC1H1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.1131 GTEX-UJMC-1826-SM-3GADT GTEx Tissue Sample Gene Expression Profiles -1.0 -0.857241 Aids (Disease) DisGeNET Gene-Phenotype Associations 1.0 null CABIN1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.01379 GSE179036_1_v_0_trim24_mouse RummaGEO Gene Perturbation Signatures -1.0 null bj HPA Cell Line Gene Expression Profiles -1.0 -1.33469 GTEX-U3ZN-2226-SM-3DB88 GTEx Tissue Sample Gene Expression Profiles -1.0 -1.30124 SPSB3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.54063 IRS1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.32762 pancreas HPA Tissue Gene Expression Profiles -1.0 -1.34219 PRPS2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.05201 inferolateral temporal cortex (area TEv, area 20)_15 yrs_M_12299 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq -1.0 -1.10064 GTEX-X5EB-2026-SM-4E3KA GTEx Tissue Sample Gene Expression Profiles 1.0 1.9941 ODF2L CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.15979 GSE158834_10_v_6_palmitic acid_human RummaGEO Drug Perturbation Signatures 1.0 null 496100511_TCx_no dementia_no TBI_89_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.10028 496100405_TCx_probable Alzheimer's disease_no TBI_88_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.12918 B9D2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.03284 RHOXF1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 13.4709 NCI-H1975 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles -1.0 -1.01786 GSE206226_0_v_3_cisplatin_human RummaGEO Drug Perturbation Signatures -1.0 null GTEX-QEG5-0626-SM-2S1PP GTEx Tissue Sample Gene Expression Profiles -1.0 -1.30381 A172 CCLE Cell Line Gene CNV Profiles -1.0 -1.38032 REXO4 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.02424 CTCF_small intestine_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null UACC-812 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.835112 GTEX-PSDG-0008-SM-48TE5 GTEx Tissue Sample Gene Expression Profiles -1.0 -1.85438 PMC4595011-pgen.1005555.s001.xlsx-MITF_UP-regulated-Ensembl_gene_id_MITF Rummagene Transcription Factor Associations 2026 1.0 null BA-84-WN26_0.1uM NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles -1.0 -0.244346 SAT1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.5956 GTEX-PVOW-2726-SM-48TCA GTEx Tissue Sample Gene Expression Profiles 1.0 0.89209 PMC10925000-12885_2024_12075_MOESM2_ESM.pdf-5-HEY2_HEY2 Rummagene Transcription Factor Associations 2026 1.0 null GTEX-XGQ4-2026-SM-4AT6G GTEx Tissue Sample Gene Expression Profiles 1.0 1.69729 GTEX-O5YV-0326-SM-2I5H2 GTEx Tissue Sample Gene Expression Profiles -1.0 -1.12881 TRMT5 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.49529 GTEX-RN64-1626-SM-48FD7 GTEx Tissue Sample Gene Expression Profiles 1.0 1.20151 GSE205316,GSE205317_2_v_1_nrip1_mouse RummaGEO Gene Perturbation Signatures 1.0 null CCLFUPGI0005T DepMap CRISPR Gene Dependency 1.0 2.47693 GTEX-V955-0726-SM-3GAFG GTEx Tissue Sample Gene Expression Profiles -1.0 -2.07116 GADD45GIP1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.35177 M-1 BioGPS Mouse Cell Type and Tissue Gene Expression Profiles -1.0 -1.38124 ZFAND5 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.37564 UMC-11 Klijn et al., Nat. 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Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.926857 FARS2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.7633 GTEX-RWSA-0626-SM-2XCBD GTEx Tissue Sample Gene Expression Profiles -1.0 -1.25879 SNU668 DepMap CRISPR Gene Dependency 1.0 2.24973 SJCRH30 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles 1.0 1.06274 DV-90 Klijn et al., Nat. 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Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.04994 SNU886 DepMap CRISPR Gene Dependency 1.0 2.95942 GSE48812_2_v_6_sulforaphane_human RummaGEO Drug Perturbation Signatures 1.0 null CTCF_embryonic fibroblast_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null MMACHC CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.42631 OCUG1 DepMap CRISPR Gene Dependency 1.0 2.55954 POLR2AphosphoS2_CH12.LX_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE77108_3_v_2_saha_human RummaGEO Drug Perturbation Signatures 1.0 null ACTR5 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.23993 FAM76A CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.73724 HPAEC cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.981 RERFLCMS CCLE Cell Line Gene CNV Profiles 1.0 1.77894 GTEX-WH7G-1626-SM-4LVMY GTEx Tissue Sample Gene Expression Profiles 1.0 0.992101 GTEX-XUZC-1026-SM-4BOPY GTEx Tissue Sample Gene Expression Profiles 1.0 1.23201 GB-46-CK08_1uM NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles 1.0 0.251905 GTEX-SIU8-0526-SM-2XCDP GTEx Tissue Sample Gene Expression Profiles -1.0 -0.904481 GLCCI1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.58724 GSE149901_2_v_0_anlotinib_human RummaGEO Drug Perturbation Signatures -1.0 null GTEX-SNMC-1326-SM-2XCFK GTEx Tissue Sample Gene Expression Profiles -1.0 -1.81479 GTEX-XLM4-0726-SM-4AT64 GTEx Tissue Sample Gene Expression Profiles 1.0 1.05637 TET1-21490601-MESC-MOUSE ChEA Transcription Factor Binding Site Profiles 1.0 null HUS1B CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.05848 SNRPG CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.44422 CB-31-UO16_10uM NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles -1.0 -0.655917 ERLIN2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.53365 EDRF1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.84817 GSE209582_1_v_2_chloroquine_human RummaGEO Drug Perturbation Signatures 1.0 null ONCODG1 DepMap CRISPR Gene Dependency 1.0 2.02428 GSE210101,GSE210114_8_v_9_urod_human RummaGEO Gene Perturbation Signatures 1.0 null TYKNU CCLE Cell Line Gene CNV Profiles 1.0 1.64775 PMC11409756-13062_2024_533_MOESM1_ESM.xlsx-Sheet1-Table_S1_Differentially_expressed_genes_DEGs_regulated_by_ZFP64_through_mRNA-seq_ZFP64 Rummagene Transcription Factor Associations 2026 1.0 null primary auditory cortex (core)_19 pcw_F_12885 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq 1.0 1.10535 GSE77108_5_v_2_saha_human RummaGEO Drug Perturbation Signatures 1.0 null GSE180185_7_v_10_setbp1_human RummaGEO Gene Perturbation Signatures -1.0 null SYNGR1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.78773 CAL78 CCLE Cell Line Gene CNV Profiles 1.0 1.65694 C99 DepMap CRISPR Gene Dependency 1.0 2.61766 SLC35C1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.00044 EFM-19 Klijn et al., Nat. 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Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.827372 GSE216273,GSE216292_0_v_7_palbociclib_human RummaGEO Drug Perturbation Signatures 1.0 null H3K4me1_erythroblast_mm9_3 ENCODE Histone Modification Site Profiles 1.0 null GTEX-T5JW-1726-SM-3GADN GTEx Tissue Sample Gene Expression Profiles -1.0 -0.845081 A-498 Klijn et al., Nat. 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Biotechnol., 2015 Cell Line Gene Expression Profiles -1.0 -1.32598 496100611_FWM_no dementia_no TBI_84_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 3.21239 cerebellar cortex_8 yrs_M_12841 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq 1.0 1.12255 GTEX-XUW1-0926-SM-4BONX GTEx Tissue Sample Gene Expression Profiles 1.0 0.830493 786-O Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles 1.0 0.833188 GD-66-XE49_10uM NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles 1.0 0.240981 GTEX-U8XE-0626-SM-3DB8U GTEx Tissue Sample Gene Expression Profiles -1.0 -1.18737 GSE248045,GSE248046_6_v_2_runx1_mouse RummaGEO Gene Perturbation Signatures -1.0 null cerebellar cortex_15 yrs_M_12299 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq 1.0 0.845676 PADI4 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.40118 PRRC2C CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.81937 BC-62-RZ55_10uM NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles 1.0 0.215247 GTEX-XMD1-2826-SM-4AT5F GTEx Tissue Sample Gene Expression Profiles 1.0 1.46799 CPSF3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.25078 hsa-miR-4711-5p TargetScan Predicted Conserved microRNA Targets 1.0 0.31417 GTEX-RTLS-2326-SM-46MUH GTEx Tissue Sample Gene Expression Profiles 1.0 1.03221 ACSBG2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.73929 CAT CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.12856 thyroid gland HPA Tissue Protein Expression Profiles 1.0 0.931102 NCI-H1975 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.949768 MYPOP CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.22544 KDM1A_KD_GDS5055_367_mouse_adipose tissue GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null PMC7581777-41419_2020_3029_MOESM6_ESM.xlsx-MNX1_ChIP-Symbol_MNX1 Rummagene Transcription Factor Associations 2026 1.0 null FBLL1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.5269 AR-27623747-22RV1-MOUSE-PROSTATE-CARCINOMA ChEA Transcription Factor Targets 2022 1.0 null FUBP3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.10576 GTEX-RU72-0011-R11A-SM-2TF6J GTEx Tissue Sample Gene Expression Profiles 1.0 1.17937 PGF CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.54374 hek293 HPA Cell Line Gene Expression Profiles 1.0 1.94327 hsa-miR-2113 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.965816 496100630_PCx_no dementia_no TBI_78_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.14418 GTEX-UPIC-0002-SM-3NMDC GTEx Tissue Sample Gene Expression Profiles -1.0 -1.13314 spleen HPA Tissue Protein Expression Profiles -1.0 -1.12208 CERS3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.17536 GTEX-OHPL-2426-SM-48TDN GTEx Tissue Sample Gene Expression Profiles 1.0 1.16368 primary somatosensory cortex (area S1, areas 3,1,2)_1 yrs_F_12830 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq -1.0 -1.49165 GTEX-OOBJ-0008-SM-3NB26 GTEx Tissue Sample Gene Expression Profiles -1.0 -1.12771 GTEx Heart 20-29 vs 50-59 GTEx Tissue-Specific Aging Signatures 1.0 3.45625 COX14 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.57156 KYSE-30 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.04994 GTEX-WXYG-0226-SM-3NB2Y GTEx Tissue Sample Gene Expression Profiles 1.0 0.849045 PLCD4 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.00665 GSE209601_0_v_1_mef2a_human RummaGEO Gene Perturbation Signatures -1.0 null YIF1B CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.8695 primary auditory cortex (core)_11 yrs_F_12289 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq -1.0 -1.09643 RAB40AL CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 4.38029 GSE162892_4_v_0_sox9_human RummaGEO Gene Perturbation Signatures 1.0 null GTEX-R55E-0726-SM-48FCZ GTEx Tissue Sample Gene Expression Profiles 1.0 2.09008 RPMI-7951 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles -1.0 -1.15629 cerebellar cortex_21 yrs_F_13057 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq 1.0 0.972632 GTEX-T5JC-0011-R11A-SM-32PMB GTEx Tissue Sample Gene Expression Profiles 1.0 1.1066 H3K4me1_liver_mm9_2 ENCODE Histone Modification Site Profiles 1.0 null GTEX-XMK1-0008-SM-4GICF GTEx Tissue Sample Gene Expression Profiles -1.0 -1.34403 SETDB1_KO_GSE40296_7_mouse_brain (telencephalon) GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null L-363 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles 1.0 1.78092 GSE60217_1_v_2_inosine_human RummaGEO Drug Perturbation Signatures -1.0 null GTEX-S7SF-0008-SM-3NM8T GTEx Tissue Sample Gene Expression Profiles -1.0 -1.06352 GTEX-P44H-0008-SM-48TDW GTEx Tissue Sample Gene Expression Profiles -1.0 -1.18651 POLR3E CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.84324 GTEX-U3ZH-0926-SM-4DXU4 GTEx Tissue Sample Gene Expression Profiles 1.0 0.885995 H3K4me3_ES-E14_mm9_2 ENCODE Histone Modification Site Profiles 1.0 null SMN1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.90931 DA-35-DU85_1uM NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles 1.0 0.243233 RERF-LC-KJ Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.950687 GSE123638,GSE123639_2_v_1_bortezomib_human RummaGEO Drug Perturbation Signatures 1.0 null DU4475 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles 1.0 2.53006 GTEX-OHPM-0008-SM-4E3IP GTEx Tissue Sample Gene Expression Profiles -1.0 -0.991112 CLPP_KO_GDS4791_374_mouse_Testies GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null CAPAN-2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.04994 KIF2A CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.70037 ACACB CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.33577 NAP1L3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.64736 KHDC1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.22058 ZNF283 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.89218 GSE234340_1_v_7_muc2_mouse RummaGEO Gene Perturbation Signatures 1.0 null GSE154577_2_v_12_plagl1_human RummaGEO Gene Perturbation Signatures -1.0 null RELB JASPAR Predicted Human Transcription Factor Targets 2025 1.0 17.2185 SNU5 CCLE Cell Line Gene CNV Profiles -1.0 -1.94871 CLPP_KO_GDS4791_104_mouse_testis GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null GTEX-X261-0011-R11A-SM-4E3JY GTEx Tissue Sample Gene Expression Profiles 1.0 1.27437 GSE202587_1_v_0_xrn1_mouse RummaGEO Gene Perturbation Signatures 1.0 null GTEX-XMD3-2326-SM-4AT5H GTEx Tissue Sample Gene Expression Profiles 1.0 1.42395 PMC10901781-41467_2024_46134_MOESM12_ESM.xlsx-Supplementary_Data_9-Supplementary_Data_09_Differential_expressed_genes_in_RUNX1-mutated_AML_RUNX1 Rummagene Transcription Factor Associations 2026 1.0 null ANKRD12 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.58929 GTEX-PLZ6-0126-SM-48TC6 GTEx Tissue Sample Gene Expression Profiles 1.0 0.925295 GTEX-S7PM-0626-SM-4AD4Q GTEx Tissue Sample Gene Expression Profiles 1.0 1.64803 GTEX-RWSA-0726-SM-2XCBE GTEx Tissue Sample Gene Expression Profiles -1.0 -1.35869 GTEX-UTHO-2726-SM-4JBH9 GTEx Tissue Sample Gene Expression Profiles 1.0 1.37519 NPIPA8 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.18267 dorsolateral prefrontal cortex_17 pcw_F_12880 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq 1.0 0.938047 GSE223893_11_v_9_setd2_human RummaGEO Gene Perturbation Signatures -1.0 null GTEX-XPVG-2226-SM-4B65U GTEx Tissue Sample Gene Expression Profiles 1.0 1.63868 LEPROTL1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.95306 H3K36me3_CH12.LX_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null TNFRSF12A CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.19199 GINM1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.453 NCI-H847 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.23442 GTEX-TML8-0526-SM-32QOQ GTEx Tissue Sample Gene Expression Profiles -1.0 -0.90573 GSE229914_1_v_3_keap1_human RummaGEO Gene Perturbation Signatures 1.0 null IRX5 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.15996 inferolateral temporal cortex (area TEv, area 20)_1 yrs_F_12830 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq -1.0 -1.06526 GTEX-SNMC-0126-SM-2XCFO GTEx Tissue Sample Gene Expression Profiles -1.0 -1.94776 CEP290 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.96754 HCC1319 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.835112 METTL21A CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.2918 GTEX-U3ZN-0226-SM-3DB8D GTEx Tissue Sample Gene Expression Profiles -1.0 -2.11207 GTEX-QVJO-0006-SM-2S1RC GTEx Tissue Sample Gene Expression Profiles -1.0 -1.64645 ARFGAP1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.22123 TWIST1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 17.6251 PSN1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.89269 KLE Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles 1.0 1.27475 NCIH209 CCLE Cell Line Gene CNV Profiles 1.0 2.42823 striatum_19 pcw_F_12885 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq 1.0 1.10619 GTEX-T8EM-1826-SM-4DM7F GTEx Tissue Sample Gene Expression Profiles 1.0 1.11808 ZHX1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.03075 GTEX-X62O-0008-SM-46MU5 GTEx Tissue Sample Gene Expression Profiles -1.0 -1.69199 LLGL1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.41889 GTEX-VUSG-1726-SM-4KKZL GTEx Tissue Sample Gene Expression Profiles 1.0 1.00097 HL-60 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles 1.0 1.10985 cerebellar cortex_40 yrs_F_12304 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq 1.0 1.05927 GTEX-WHSB-1626-SM-3LK6J GTEx Tissue Sample Gene Expression Profiles 1.0 0.92509 GPATCH11 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.86556 SOX10 MotifMap Predicted Transcription Factor Targets 1.0 null GTEX-RM2N-1626-SM-2TF5N GTEx Tissue Sample Gene Expression Profiles -1.0 -1.35833 GTEX-RN64-0326-SM-2TC5J GTEx Tissue Sample Gene Expression Profiles -1.0 -1.12953 PIP5K1A CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.26818 PL-21 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles 1.0 2.64609 H2BC7 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.46903 cerebellar cortex_11 yrs_F_12289 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq 1.0 1.14079 496100631_PCx_dementia_TBI_77_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 3.13234 GTEX-SUCS-0326-SM-32PLL GTEx Tissue Sample Gene Expression Profiles -1.0 -1.51222 SNU182 DepMap CRISPR Gene Dependency 1.0 2.02307 496100616_FWM_no dementia_TBI_84_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.9892 DU4475 DepMap CRISPR Gene Dependency 1.0 2.49477 HIF3A CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.09506 GTEX-O5YV-2026-SM-2D7VS GTEx Tissue Sample Gene Expression Profiles -1.0 -1.77329 GTEX-S341-0826-SM-4AD73 GTEx Tissue Sample Gene Expression Profiles 1.0 0.939946 GSE135514_8_v_3_dasatinib_human RummaGEO Drug Perturbation Signatures 1.0 null YWHAH CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.77094 BD-96-HO33_10uM NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles -1.0 -0.617384 GTEX-N7MT-0007-SM-3GACQ GTEx Tissue Sample Gene Expression Profiles -1.0 -1.31009 PPHLN1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.58843 VSNL1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.2872 GSE171837_0_v_3_bortezomib_human RummaGEO Drug Perturbation Signatures -1.0 null FHDC1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.83137 GTEX-W5X1-0826-SM-3GILN GTEx Tissue Sample Gene Expression Profiles -1.0 -1.11978 ANO6 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.98517 GTEX-QDVJ-1826-SM-2S1P3 GTEx Tissue Sample Gene Expression Profiles -1.0 -1.01865 COX8A CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.13825 GTEX-OHPM-2126-SM-3LK75 GTEx Tissue Sample Gene Expression Profiles 1.0 2.84881 RIC8B CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.88613 SPPL3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.14789 GSE178292_0_v_2_melphalan_human RummaGEO Drug Perturbation Signatures 1.0 null T3M3 DepMap CRISPR Gene Dependency 1.0 2.40012 GTEX-QXCU-0326-SM-2TC63 GTEx Tissue Sample Gene Expression Profiles 1.0 0.829168 GTEX-WFG7-2326-SM-3GIKV GTEx Tissue Sample Gene Expression Profiles -1.0 -1.01644 posteroventral (inferior) parietal cortex_37 yrs_M_12303 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq -1.0 -0.831092 Skeletal Muscle Male Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles 1.0 1.93529 HNRNPM CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.34546 GSE162892_3_v_0_isox_human RummaGEO Drug Perturbation Signatures 1.0 null ZNF276 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.90642 GSE146982_7_v_5_metformin_human RummaGEO Drug Perturbation Signatures -1.0 null BB-86-BE19_10uM NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles -1.0 -0.226341 TLR7 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.02856 GTEX-S95S-1226-SM-4GICG GTEx Tissue Sample Gene Expression Profiles 1.0 1.18352 GTEX-QEG4-0426-SM-33HC3 GTEx Tissue Sample Gene Expression Profiles -1.0 -1.43193 HC-01-FD24_0.01uM NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles -1.0 -0.286003 GSE183994_1_v_0_scml2_mouse RummaGEO Gene Perturbation Signatures 1.0 null ADGRE5 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.74709 TEAD3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 17.3143 PACADD188 DepMap CRISPR Gene Dependency 1.0 2.39207 IFT22 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.66542 GULP1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.25546 GTEX-SNMC-0926-SM-4DM5U GTEx Tissue Sample Gene Expression Profiles 1.0 0.892038 NCI-H510A Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.892467 GNAI3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.65414 GSE242367_1_v_0_sorafenib_human RummaGEO Drug Perturbation Signatures 1.0 null RNASEH2C CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.37473 GAL3ST1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.38584 GTEX-X4XX-0926-SM-46MV7 GTEx Tissue Sample Gene Expression Profiles 1.0 1.33362 KLE CCLE Cell Line Gene CNV Profiles 1.0 1.54536 GTEX-P4PP-0008-SM-48TDV GTEx Tissue Sample Gene Expression Profiles -1.0 -0.845633 GSE158834_10_v_13_palmitic acid_human RummaGEO Drug Perturbation Signatures 1.0 null CHL1DM DepMap CRISPR Gene Dependency 1.0 2.40936 EDF1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.24078 GTEX-RU1J-0008-SM-46MV9 GTEx Tissue Sample Gene Expression Profiles -1.0 -1.06495 GTEX-WZTO-0426-SM-3NM99 GTEx Tissue Sample Gene Expression Profiles 1.0 1.03442 GSE240258_0_v_1_prmt1_human RummaGEO Gene Perturbation Signatures -1.0 null GTEX-OOBK-0008-SM-3NB27 GTEx Tissue Sample Gene Expression Profiles -1.0 -0.998178 GTEX-SE5C-0006-SM-4BRW5 GTEx Tissue Sample Gene Expression Profiles 1.0 0.956963 GTEX-R55F-0005-SM-2TF4W GTEx Tissue Sample Gene Expression Profiles -1.0 -0.949137 GSE226115,GSE226116_1_v_0_doxorubicin_human RummaGEO Drug Perturbation Signatures 1.0 null GTEX-WY7C-2526-SM-3NB2N GTEx Tissue Sample Gene Expression Profiles -1.0 -1.14058 PRB3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.29209 GTEX-XPT6-0001-SM-4B64G GTEx Tissue Sample Gene Expression Profiles -1.0 -1.16406 GTEX-X8HC-0726-SM-46MWG GTEx Tissue Sample Gene Expression Profiles 1.0 1.03032 GSE130437_2_v_1_palbociclib_human RummaGEO Drug Perturbation Signatures 1.0 null GTEX-TMMY-1726-SM-4DXTD GTEx Tissue Sample Gene Expression Profiles 1.0 1.072 GTEX-O5YW-0126-SM-3LK6D GTEx Tissue Sample Gene Expression Profiles 1.0 0.913136 TBRG4 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.44233 TMD8 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.884 Perturb_7959_KD_ZFC3H1_SRP222099 PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 9.31469 c2c12 BioGPS Mouse Cell Type and Tissue Gene Expression Profiles -1.0 -1.25582 GSE153064,GSE153065_1_v_0_hdac3_mouse RummaGEO Gene Perturbation Signatures -1.0 null GTEX-RWSA-0008-SM-47JYX GTEx Tissue Sample Gene Expression Profiles -1.0 -1.11157 GTEX-X88G-0006-SM-47JX5 GTEx Tissue Sample Gene Expression Profiles 1.0 0.918127 CAL-148 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles -1.0 -0.888452 GSE154337_0_v_1_temozolomide_human RummaGEO Drug Perturbation Signatures 1.0 null TNFRSF11A CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.87197 GTEX-RWS6-2126-SM-2XCAV GTEx Tissue Sample Gene Expression Profiles -1.0 -0.895757 GTEX-PWOO-2326-SM-2S1PQ GTEx Tissue Sample Gene Expression Profiles -1.0 -1.00806 DDAH2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.388 GTEX-S3XE-0626-SM-4AD6B GTEx Tissue Sample Gene Expression Profiles 1.0 1.34758 COR-L88 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 2.74585 GSE184356_3_v_0_tfam_human RummaGEO Gene Perturbation Signatures 1.0 null ELF5 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.85758 KCNG1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.58748 ZNF326 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.33991 GTEX-QV31-1626-SM-2S1QC GTEx Tissue Sample Gene Expression Profiles -1.0 -0.827314 TMEM125 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.896 PCDHB4 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -4.30381 HEATR5A CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.01131 hsa-miR-218 TargetScan Predicted Conserved microRNA Targets 1.0 0.632343 hela HPA Cell Line Gene Expression Profiles 1.0 1.10339 GTEX-QESD-1626-SM-2S1RB GTEx Tissue Sample Gene Expression Profiles -1.0 -1.62855 CAR-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.835112 GSE158834_1_v_4_palmitic acid_human RummaGEO Drug Perturbation Signatures -1.0 null TTC14 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.6364 BAX CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.38571 PMC9714459-DataSheet3.xlsx-Supplement_3A-1166_common_elements_in_MSC_and_Fibroblasts_MSC Rummagene Transcription Factor Associations 2026 1.0 null GTEX-XBEW-0006-SM-4AT4E GTEx Tissue Sample Gene Expression Profiles 1.0 1.2043 NTF4 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.76369 FBXO22 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.6793 GSE221327_8_v_0_clpp_human RummaGEO Gene Perturbation Signatures 1.0 null C2orf69 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.97829 DETROIT 562 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles -1.0 -1.06847 MALME3M DepMap CRISPR Gene Dependency 1.0 2.89843 GTEX-RUSQ-2126-SM-47JXK GTEx Tissue Sample Gene Expression Profiles 1.0 2.26625 PTEN_KD_GDS4759_337_mouse_E16 primary cortical neuron cultures GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null mRNA_NR5A2_19796622 ESCAPE Omics Signatures of Genes and Proteins for Stem Cells 1.0 null H3K27me3_spleen_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null GTEX-XYKS-1726-SM-4E3IO GTEx Tissue Sample Gene Expression Profiles 1.0 1.29718 GTEX-R45C-1226-SM-48FEE GTEx Tissue Sample Gene Expression Profiles 1.0 1.08839 HCC70 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.49267 GTEX-P4PP-2426-SM-3P61L GTEx Tissue Sample Gene Expression Profiles 1.0 1.05275 GTEX-SN8G-0008-SM-4DM4X GTEx Tissue Sample Gene Expression Profiles -1.0 -1.72938 Tcf12 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 32.0688 LUC7L3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.39773 ES-WA7 Cells Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles -1.0 -0.896477 muscle GTEx Tissue Gene Expression Profiles -1.0 -1.5445 GTEX-SNMC-1026-SM-4DM7K GTEx Tissue Sample Gene Expression Profiles 1.0 1.7127 GTEX-T5JW-0003-SM-3NMAD GTEx Tissue Sample Gene Expression Profiles -1.0 -0.849277 HYLS1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.35208 ZR751 CCLE Cell Line Gene CNV Profiles -1.0 -1.32135 NACA CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.47383 SLC7A2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.26312 cerebellar cortex_37 pcw_M_263195015 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq 1.0 1.30607 urinary bladder HPA Tissue Gene Expression Profiles -1.0 -0.837785 OVSAHO Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 2.14649 GTEX-Q2AG-1126-SM-48U1P GTEx Tissue Sample Gene Expression Profiles 1.0 1.02832 CTCF_limb_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null H3K4me1_bone marrow macrophage_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null GTEX-VUSG-1226-SM-4KKZF GTEx Tissue Sample Gene Expression Profiles -1.0 -0.824758 EWSR1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.77336 GTEX-WFON-1626-SM-4LVMV GTEx Tissue Sample Gene Expression Profiles 1.0 0.88225 NCIH1792 DepMap CRISPR Gene Dependency 1.0 2.20041 GTEX-P4QS-1626-SM-2S1NH GTEx Tissue Sample Gene Expression Profiles -1.0 -1.2368 MDA-MB-436 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.873777 496100586_HIP_no dementia_no TBI_89_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.6676 GTEX-WZTO-0826-SM-3NM8Q GTEx Tissue Sample Gene Expression Profiles -1.0 -0.869601 496100532_FWM_no dementia_no TBI_89_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.56291 GTEx Thyroid 20-29 vs 70-79 GTEx Tissue-Specific Aging Signatures 1.0 4.01943 GTEX-U3ZN-1026-SM-4DXTC GTEx Tissue Sample Gene Expression Profiles 1.0 0.831914 testis_7a HPA Tissue Sample Gene Expression Profiles 1.0 2.38293 hsa-miR-1307 TargetScan Predicted Conserved microRNA Targets 1.0 0.766596 PMC10111863-supp_gad.350269.122_Supplemental_Paun350269_FileS3.xlsx-A_ASCL1-regulated_DGE-geneID_ASCL1 Rummagene Transcription Factor Associations 2026 1.0 null SW 1417 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.15743 JURKAT DepMap CRISPR Gene Dependency 1.0 2.32068 BXPC-3 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.926857 hsa-miR-423-3p TargetScan Predicted Conserved microRNA Targets 1.0 0.23348 C2BBE1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.4705 bonemarrow_6a HPA Tissue Sample Gene Expression Profiles 1.0 1.24606 POLR2A ENCODE Transcription Factor Targets 1.0 null GTEX-R55C-0526-SM-3GIKA GTEx Tissue Sample Gene Expression Profiles -1.0 -0.948034 496100375_FWM_dementia_no TBI_84_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.42173 H3K4me3_embryonic fibroblast_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null Talus TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.073 EZH2 ChEA Transcription Factor Targets 1.0 null LN235 DepMap CRISPR Gene Dependency 1.0 2.52355 GTEX-XQ8I-1726-SM-4BOQB GTEx Tissue Sample Gene Expression Profiles 1.0 1.39169 PMC7371429-elife-53600-supp2.xlsx-annotated_MEIS1_in_B13ko-M1-Gene_Name_MEIS1 Rummagene Transcription Factor Associations 2026 1.0 null GTEX-S4UY-0008-SM-3NM8H GTEx Tissue Sample Gene Expression Profiles -1.0 -1.1266 GTEX-WFG7-0826-SM-3GIKU GTEx Tissue Sample Gene Expression Profiles -1.0 -1.41987 DA-66-OE69_10uM NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles -1.0 -0.422378 SLC16A8 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.16747 GTEX-T2IS-2626-SM-32QPP GTEx Tissue Sample Gene Expression Profiles -1.0 -1.285 cerebellar cortex_35 pcw_F_12295 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq 1.0 2.76483 GTEX-U3ZM-0002-SM-3NMDM GTEx Tissue Sample Gene Expression Profiles -1.0 -1.45227 GTEX-NPJ8-0011-R1a-SM-33HCB GTEx Tissue Sample Gene Expression Profiles -1.0 -1.35603 SLC25A5 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.90701 GTEX-OIZH-2126-SM-3NB1P GTEx Tissue Sample Gene Expression Profiles 1.0 1.63036 H3K4me1_megakaryocyte_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null RIPK1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 4.07254 TAF9B CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.71826 GTEX-TKQ1-0008-SM-4DXSO GTEx Tissue Sample Gene Expression Profiles -1.0 -1.3985 lung HPA Tissue Protein Expression Profiles -1.0 -1.12208 DA-33-BM26_10uM NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles 1.0 0.268997 TSPYL5 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.52665 SK-MEL-5 Klijn et al., Nat. 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Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.60222 GTEX-XBED-2026-SM-4AT5D GTEx Tissue Sample Gene Expression Profiles 1.0 1.68954 GTEX-REY6-2426-SM-48FF5 GTEx Tissue Sample Gene Expression Profiles -1.0 -1.0176 GSE158834_2_v_13_palmitic acid_human RummaGEO Drug Perturbation Signatures 1.0 null GTEX-Q2AH-0226-SM-48U1I GTEx Tissue Sample Gene Expression Profiles 1.0 1.06382 PMC4595011-pgen.1005555.s001.xlsx-BPTF_UP-regulated-Ensembl_gene_id_BPTF Rummagene Transcription Factor Associations 2026 1.0 null posteroventral (inferior) parietal cortex_11 yrs_F_12289 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq -1.0 -1.06798 SECISBP2L CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.48157 Hinge joint TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.401 DLGAP3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.43227 NELFE CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.72539 NABP2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.05339 TOR2A CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.82032 primary visual cortex (striate cortex, area V1/17)_19 pcw_F_12885 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq 1.0 1.1286 TACC1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.44927 SU-DHL-10 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles 1.0 1.06204 GTEX-XOTO-2926-SM-4B65G GTEx Tissue Sample Gene Expression Profiles 1.0 1.05287 JHUEM7 DepMap CRISPR Gene Dependency 1.0 2.80819 TSC1_Deficiency_GDS4572_346_mouse_Naive CD4 T cells GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null SLR24 CCLE Cell Line Gene CNV Profiles -1.0 -1.45127 H3K4me3_G1E-ER4_mm9_3 ENCODE Histone Modification Site Profiles 1.0 null GTEX-OIZH-0326-SM-2HMKC GTEx Tissue Sample Gene Expression Profiles -1.0 -1.08327 JHH-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.960418 hsa-miR-3662 TargetScan Predicted Conserved microRNA Targets 1.0 0.226173 KDELR2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.48959 GOS3 CCLE Cell Line Gene CNV Profiles -1.0 -1.36463 CAL-85-1 Klijn et al., Nat. 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Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.56123 SART1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.60364 POGLUT1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.5475 SET-2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.88479 MB1 DepMap CRISPR Gene Dependency 1.0 2.33261 posteroventral (inferior) parietal cortex_8 yrs_M_12981 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq -1.0 -1.07985 GTEX-XUYS-0326-SM-47JX2 GTEx Tissue Sample Gene Expression Profiles -1.0 -1.18657 LS1034 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.28434 GTEX-P4PP-2026-SM-3P61N GTEx Tissue Sample Gene Expression Profiles 1.0 0.82659 GSE158834_10_v_13_palm_human RummaGEO Gene Perturbation Signatures 1.0 null ELMO3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.99015 GTEX-SSA3-0008-SM-47JWJ GTEx Tissue Sample Gene Expression Profiles -1.0 -2.26458 ACBD6 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.77326 inferolateral temporal cortex (area TEv, area 20)_21 pcw_F_12365 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq 1.0 0.889378 OVCAR-8 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles -1.0 -1.99645 GSE68925_1_v_0_fasudil_human RummaGEO Drug Perturbation Signatures 1.0 null GSE231745_1_v_0_venetoclax_human RummaGEO Drug Perturbation Signatures 1.0 null GTEX-XAJ8-0526-SM-47JYK GTEx Tissue Sample Gene Expression Profiles 1.0 0.952364 SET-2 Klijn et al., Nat. 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Biotechnol., 2015 Cell Line Gene Expression Profiles -1.0 -0.885786 TMEM86B CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.53277 WASF3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 4.60941 GSE242290_3_v_11_glutathione_human RummaGEO Drug Perturbation Signatures -1.0 null amygdaloid complex_8 yrs_M_12981 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq -1.0 -0.974198 H3K4me3_limb_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null GTEX-P4PP-0326-SM-33HC4 GTEx Tissue Sample Gene Expression Profiles -1.0 -1.89588 ZMYM5 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.8136 HCC366 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.92844 GTEX-W5WG-0002-SM-3NMDN GTEx Tissue Sample Gene Expression Profiles -1.0 -1.06777 OPM-2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles 1.0 1.11415 CORL88 CCLE Cell Line Gene CNV Profiles 1.0 2.02034 GSE168602,GSE168604_2_v_6_selumetinib_human RummaGEO Drug Perturbation Signatures 1.0 null 496100561_PCx_probable Alzheimer's disease_TBI_78_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.1645 POLR2A_brain_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null hippocampus HPA Tissue Protein Expression Profiles -1.0 -1.12208 POLA1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.15963 CEND1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.14428 GTEX-OXRP-2326-SM-2S1NL GTEx Tissue Sample Gene Expression Profiles -1.0 -1.60318 UNC5B CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.83447 GTEX-SN8G-0326-SM-32PLG GTEx Tissue Sample Gene Expression Profiles -1.0 -1.40882 GTEX-SJXC-1226-SM-4DM78 GTEx Tissue Sample Gene Expression Profiles 1.0 0.958341 BT-20 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles -1.0 -1.48441 DPPA3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.63299 PMC6335596-mmc2.xlsx-RNA-seq_Day_12_GATA6_Het-Unnamed_12_GATA6 Rummagene Transcription Factor Associations 2026 1.0 null UBR2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.47445 GTEX-O5YT-0326-SM-32PKA GTEx Tissue Sample Gene Expression Profiles -1.0 -2.20207 anterior (rostral) cingulate (medial prefrontal) cortex_2 yrs_F_12979 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq 1.0 1.59392 MCAM CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.30849 H3K9ac_heart_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null COLO 829 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles -1.0 -0.841436 GTEX-P4PQ-0226-SM-2S1NK GTEx Tissue Sample Gene Expression Profiles -1.0 -1.0679 CERS4 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.11781 H3K4me1_brown adipose tissue_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null GTEX-OHPL-1626-SM-2HMIR GTEx Tissue Sample Gene Expression Profiles -1.0 -1.64762 GSE242290_1_v_2_glutathione_human RummaGEO Drug Perturbation Signatures -1.0 null MSANTD2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.0455 GTEX-PWOO-0526-SM-2S1Q3 GTEx Tissue Sample Gene Expression Profiles -1.0 -1.45229 hippocampus (hippocampal formation)_37 pcw_M_263195015 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq 1.0 1.25365 ELMO2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.54263 GSE202933_1_v_0_ugt2b28_human RummaGEO Gene Perturbation Signatures -1.0 null GSE146982_7_v_5_gpd1_human RummaGEO Gene Perturbation Signatures -1.0 null GSE96777,GSE96778_1_v_0_zbtb4_human RummaGEO Gene Perturbation Signatures 1.0 null GTEX-X4LF-0006-SM-3NMCO GTEx Tissue Sample Gene Expression Profiles 1.0 0.832099 BRCC3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.70288 ADAM9 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.54343 SUM52PE DepMap CRISPR Gene Dependency 1.0 2.7915 GTEX-N7MS-0126-SM-3TW8O GTEx Tissue Sample Gene Expression Profiles 1.0 2.54935 ZFHX4 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.36034 ACCS CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.44391 anterior (rostral) cingulate (medial prefrontal) cortex_19 yrs_F_12832 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq -1.0 -1.01328 cerebellar cortex_37 yrs_M_12303 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq 1.0 1.47738 NCI-H1048 Klijn et al., Nat. 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Biotechnol., 2015 Cell Line Gene Expression Profiles -1.0 -1.14861 INTS13 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 4.20457 PROKR1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.10164 Ankle joint TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.405 heart muscle HPA Tissue Protein Expression Profiles 1.0 0.931102 HCC1171 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.19353 GTEX-QDVN-0326-SM-2I3FS GTEx Tissue Sample Gene Expression Profiles -1.0 -1.75072 GATA2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 16.4379 GTEX-OXRO-1726-SM-3LK6C GTEx Tissue Sample Gene Expression Profiles 1.0 0.996149 BE-81-QL64_10uM NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles -1.0 -0.250107 PMC8185471-mmc4.xlsx-D4-DEGs_between_SOX15_KO_DPs_and_WT_DPs_cells_at_day_4_padj_0_05_Log2FoldChange_0_5_SOX15_KO_WT_or_Log2FoldChange_-0_5_SOX15_KO_WT_SOX15 Rummagene Transcription Factor Associations 2026 1.0 null CTCF ENCODE Transcription Factor Targets 1.0 null GTEX-UTHO-2926-SM-3P5Z9 GTEx Tissue Sample Gene Expression Profiles 1.0 1.34529 mediodorsal nucleus of thalamus_8 yrs_M_12841 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq -1.0 -0.997118 PRPH2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.61085 496100543_FWM_probable Alzheimer's disease_TBI_78_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 3.5813 GTEX-WWYW-0011-R11A-SM-3NB38 GTEx Tissue Sample Gene Expression Profiles 1.0 1.3717 DMS153 CCLE Cell Line Gene CNV Profiles 1.0 2.47633 PMC9160255-41467_2022_30710_MOESM4_ESM.xlsx-AR_specific_regulated_genes-SYMBOL_1_AR Rummagene Transcription Factor Associations 2026 1.0 null GTEX-WCDI-0008-SM-47JYE GTEx Tissue Sample Gene Expression Profiles -1.0 -1.05852 TMED9 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.56428 Ebf2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 31.5756 GTEX-RWSA-2026-SM-47JX8 GTEx Tissue Sample Gene Expression Profiles 1.0 1.1778 T84 DepMap CRISPR Gene Dependency 1.0 2.587 PANC 03.27 Klijn et al., Nat. 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Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.850123 RABAC1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.11698 KIT CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.97601 GSE182680,GSE182683_5_v_8_dexamethasone_human RummaGEO Drug Perturbation Signatures 1.0 null PMC10534007-Table_2.xlsx-S1_overlap_MSC_up_B_V-438_common_elements_in_BFTC905_MSC_up_and_VM-CUB1_MSC_up_MSC Rummagene Transcription Factor Associations 2026 1.0 null GSE221327_8_v_2_clpp_human RummaGEO Gene Perturbation Signatures 1.0 null H3K4me1_small intestine_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null 496100438_PCx_possible Alzheimer's disease_no TBI_88_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.05135 GSE169356_0_v_4_ivermectin_human RummaGEO Drug Perturbation Signatures 1.0 null TRIT1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.36376 bonemarrow_6c HPA Tissue Sample Gene Expression Profiles 1.0 1.08593 EPHA2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 4.1445 GTEX-QEG4-0626-SM-2S1OY GTEx Tissue Sample Gene Expression Profiles -1.0 -1.51662 UOK101 DepMap CRISPR Gene Dependency 1.0 2.16874 NCI-H1355 Klijn et al., Nat. 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Biotechnol., 2015 Cell Line Gene Expression Profiles 1.0 1.08848 NT5DC2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.7485 GSE206516,GSE206518_0_v_4_ptdss2_human RummaGEO Gene Perturbation Signatures 1.0 null GTEX-NPJ8-1626-SM-2HMIY GTEx Tissue Sample Gene Expression Profiles -1.0 -2.6744 BRD1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.37721 GTEX-OOBK-2126-SM-3LK5T GTEx Tissue Sample Gene Expression Profiles 1.0 2.49575 INHA CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.63332 LSS CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.36044 wm115 HPA Cell Line Gene Expression Profiles -1.0 -1.14905 COLO 849 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles -1.0 -1.08452 RPL7L1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.95228 GSE158834_1_v_3_palmitic acid_human RummaGEO Drug Perturbation Signatures -1.0 null OLFM2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.397 H3K4me3_brown adipose tissue_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null Hiv-1, Resistance To DisGeNET Gene-Phenotype Associations 1.0 null TXNDC11 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.78441 PBX3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.66666 Hand1::Tcf3 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 28.4828 GNRH1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.05039 GTEX-R55C-1426-SM-48FED GTEx Tissue Sample Gene Expression Profiles 1.0 1.80902 GSE158834_1_v_4_palm_human RummaGEO Gene Perturbation Signatures -1.0 null DDX47 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.02299 GTEX-S7SF-0526-SM-3K2BC GTEx Tissue Sample Gene Expression Profiles -1.0 -1.90975 hsa-miR-3133 TargetScan Predicted Conserved microRNA Targets 1.0 0.454769 skin HPA Tissue Gene Expression Profiles 1.0 1.06008 GTEX-R55G-0226-SM-48FEI GTEx Tissue Sample Gene Expression Profiles 1.0 1.09193 ESET_KO_GDS4508_348_mouse_Dorsal telencephalon from E14.5 embryos GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null GTEX-O5YT-0008-SM-4E3IQ GTEx Tissue Sample Gene Expression Profiles -1.0 -1.30517 GPR50 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.73701 GSE215086_3_v_6_batf_human RummaGEO Gene Perturbation Signatures 1.0 null GTEX-XXEK-2026-SM-4BRVE GTEx Tissue Sample Gene Expression Profiles -1.0 -0.883927 PEX13 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.12123 Perturb_7552_OE_IL1RN_SRP300901 PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 2.33612 POLR2A_cerebellum_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null FLO1 DepMap CRISPR Gene Dependency 1.0 2.40575 NPTX1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.78 AASDHPPT CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.5397 PE01 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles -1.0 -1.03784 GTEX-WK11-2526-SM-3NM9Y GTEx Tissue Sample Gene Expression Profiles -1.0 -0.96716 KO52 CCLE Cell Line Gene CNV Profiles 1.0 1.53573 GTEX-PLZ4-2826-SM-3P617 GTEx Tissue Sample Gene Expression Profiles 1.0 1.21193 GTEX-P4QS-2026-SM-3NMCG GTEx Tissue Sample Gene Expression Profiles 1.0 1.06493 GTEX-U3ZH-1526-SM-4DXV1 GTEx Tissue Sample Gene Expression Profiles 1.0 1.51506 GTEX-TKQ1-1426-SM-4GICK GTEx Tissue Sample Gene Expression Profiles -1.0 -1.42292 TNIP1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.58718 CORL105 CCLE Cell Line Gene CNV Profiles -1.0 -1.33158 GTEX-WEY5-2126-SM-3GILK GTEx Tissue Sample Gene Expression Profiles -1.0 -0.864372 TD-29-IN36_10uM NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles -1.0 -1.11037 KA-29-AB08_10uM NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles -1.0 -0.411877 C12orf57 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.66389 OVCA 432 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.950687 SPSB4 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.53727 GTEX-U3ZN-1426-SM-3DB87 GTEx Tissue Sample Gene Expression Profiles -1.0 -1.42793 HCC1569 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.33947 PMC12099056-research.0703.f1.pdf-12-DDIT3_DDIT3 Rummagene Transcription Factor Associations 2026 1.0 null HSC4 CCLE Cell Line Gene CNV Profiles -1.0 -1.47851 H3K4me1_erythroblast_mm9_2 ENCODE Histone Modification Site Profiles 1.0 null GTEX-SNMC-1526-SM-2XCFN GTEx Tissue Sample Gene Expression Profiles -1.0 -1.48219 GSE181517_0_v_1_doxorubicin_human RummaGEO Drug Perturbation Signatures 1.0 null FUS CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.56861 NCIH1092 CCLE Cell Line Gene CNV Profiles 1.0 1.42472 PMC11373733-ABR-13-34_Suppl1.pdf-263-ZNF682_ZNF682 Rummagene Transcription Factor Associations 2026 1.0 null GTEX-XUJ4-1326-SM-4BOQ9 GTEx Tissue Sample Gene Expression Profiles 1.0 0.846511 ZNF568 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.46464 FF-28-ES17_10uM NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles 1.0 0.293016 GTEx Brain 20-29 vs 70-79 GTEx Tissue-Specific Aging Signatures 1.0 13.0611 PDCD4 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -5.0363 Patu-8988 cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.841 GTEX-U3ZH-0002-SM-3NMDD GTEx Tissue Sample Gene Expression Profiles -1.0 -1.13975 placenta_6a HPA Tissue Sample Gene Expression Profiles -1.0 -1.64255 GSE221327_6_v_2_clpp_human RummaGEO Gene Perturbation Signatures 1.0 null ONECUT1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.38701 RCC4 CCLE Cell Line Gene CNV Profiles -1.0 -1.47134 GTEX-OOBJ-2126-SM-3NB1N GTEx Tissue Sample Gene Expression Profiles 1.0 1.89414 PMC12178829-mmc4.xlsx-Sheet_4-MEG3-KD_Up-ID_AR Rummagene Transcription Factor Associations 2026 1.0 null DOV13 CCLE Cell Line Gene CNV Profiles 1.0 2.15137 PMC10319804-41467_2023_38747_MOESM10_ESM.xlsx-circARID1A_KD_genes_up-gene_name_AR Rummagene Transcription Factor Associations 2026 1.0 null MAP1B CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.2278 DMS 454 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.04036 GTEX-XQ8I-1426-SM-4BOPW GTEx Tissue Sample Gene Expression Profiles 1.0 0.91653 TTC642 DepMap CRISPR Gene Dependency 1.0 2.62656 H3K4me1_megakaryocyte_mm9_3 ENCODE Histone Modification Site Profiles 1.0 null GTEX-P4QT-1626-SM-2S1NP GTEx Tissue Sample Gene Expression Profiles -1.0 -1.13437 GTEX-QESD-0526-SM-2I5G5 GTEx Tissue Sample Gene Expression Profiles -1.0 -1.03187 GSE145990_1_v_0_ibrutinib_human RummaGEO Drug Perturbation Signatures 1.0 null GTEX-S341-1526-SM-4AD6K GTEx Tissue Sample Gene Expression Profiles 1.0 0.933908 AOC3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.0174 GTEX-VUSG-2226-SM-4KKZO GTEx Tissue Sample Gene Expression Profiles 1.0 0.921809 HT115 DepMap CRISPR Gene Dependency 1.0 2.04633 GTEX-NPJ7-0011-R11A-SM-2I3E8 GTEx Tissue Sample Gene Expression Profiles 1.0 0.951567 EB2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles 1.0 1.36609 GTEX-TSE9-2626-SM-4DXV2 GTEx Tissue Sample Gene Expression Profiles 1.0 0.999098 H3K4me3_ES-Bruce4_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null GSE154577_7_v_10_plagl1_human RummaGEO Gene Perturbation Signatures -1.0 null H3K4me3_megakaryocyte_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null HNRNPL CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.41982 SNU-5 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.85375 GSE146982_0_v_2_gpd1_human RummaGEO Gene Perturbation Signatures 1.0 null GSE162892_3_v_0_sox9_human RummaGEO Gene Perturbation Signatures 1.0 null Twist2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 17.8894 GSE214212_3_v_1_chd6_human RummaGEO Gene Perturbation Signatures 1.0 null GTEX-PWN1-0008-SM-48TEA GTEx Tissue Sample Gene Expression Profiles -1.0 -0.97126 ARID1A CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.72453 GSE207122_1_v_0_metformin_human RummaGEO Drug Perturbation Signatures 1.0 null GTEX-WWYW-3026-SM-3NB36 GTEx Tissue Sample Gene Expression Profiles 1.0 1.44212 striatum_37 pcw_M_263195015 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq 1.0 1.23983 GTEX-QVUS-0011-R3A-SM-3GAFD GTEx Tissue Sample Gene Expression Profiles -1.0 -1.20147 NCI-H2810 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles 1.0 0.886203 GSE171572_0_v_2_tp53_human RummaGEO Gene Perturbation Signatures 1.0 null ADAT2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.69398 GTEX-T8EM-0126-SM-4DM5R GTEx Tissue Sample Gene Expression Profiles 1.0 1.79358 GTEX-X5EB-1626-SM-4E3IV GTEx Tissue Sample Gene Expression Profiles 1.0 1.18541 GTEX-S4Z8-0226-SM-4AD5K GTEx Tissue Sample Gene Expression Profiles 1.0 1.25515 PET100 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.10244 GTEX-SSA3-0326-SM-32QPS GTEx Tissue Sample Gene Expression Profiles -1.0 -1.31834 LCLC97TM1 DepMap CRISPR Gene Dependency 1.0 2.47357 GTEX-S33H-1326-SM-4AD6A GTEx Tissue Sample Gene Expression Profiles 1.0 1.30167 GSE224969,GSE224971_3_v_5_chtop_mouse RummaGEO Gene Perturbation Signatures 1.0 null PANC 05.04 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles -1.0 -0.911389 HCC2885 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.48901 EIF3C CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.44659 fallopian tube HPA Tissue Protein Expression Profiles 1.0 0.931102 TNKS1BP1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.24498 CLPP_KO_GDS4791_537_mouse_testis GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null mRNA_KLF4_19796622 ESCAPE Omics Signatures of Genes and Proteins for Stem Cells 1.0 null GTEX-S7SE-0008-SM-33HB1 GTEx Tissue Sample Gene Expression Profiles -1.0 -1.50417 GSE234340_10_v_7_muc2_mouse RummaGEO Gene Perturbation Signatures 1.0 null GTEX-PW2O-1426-SM-48TCD GTEx Tissue Sample Gene Expression Profiles 1.0 2.38747 testis BioGPS Mouse Cell Type and Tissue Gene Expression Profiles 1.0 2.09859 HCC1011 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles 1.0 0.889772 GSE103122_0_v_1_puromycin_human RummaGEO Drug Perturbation Signatures -1.0 null ARIH2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.58828 RPA1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.16936 GR-M Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 2.14649 GTEX-P4QS-2126-SM-3NMCF GTEx Tissue Sample Gene Expression Profiles 1.0 1.81474 GSE158834_1_v_3_palm_human RummaGEO Gene Perturbation Signatures -1.0 null GTEX-XGQ4-0008-SM-4AT3Z GTEx Tissue Sample Gene Expression Profiles -1.0 -0.888283 UBXN2B CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.54147 JJN-3 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles -1.0 -0.887048 GTEX-XBEC-1526-SM-4AT68 GTEx Tissue Sample Gene Expression Profiles 1.0 1.11913 PMC7335061-41467_2020_17150_MOESM4_ESM.xlsx-Table_S3-KLF4_correlates_KLF4 Rummagene Transcription Factor Associations 2026 1.0 null BC-25-VR48_10uM NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles -1.0 -0.216805 H3K4me1_testis_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null LRRC40 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.5137 RPF1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.48794 GTEX-U4B1-1526-SM-4DXSL GTEx Tissue Sample Gene Expression Profiles 1.0 1.58368 GTEX-WHWD-0426-SM-3LK83 GTEx Tissue Sample Gene Expression Profiles -1.0 -0.925037 HCC70 CCLE Cell Line Gene CNV Profiles 1.0 1.57531 caco2 HPA Cell Line Gene Expression Profiles -1.0 -1.86641 anterior (rostral) cingulate (medial prefrontal) cortex_23 yrs_M_12300 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq -1.0 -0.824038 A549 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.949768 NUDT10 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.68578 PPP1R12C CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.12802 KLHL5 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.65758 H3K27ac_testis_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null TC138 DepMap CRISPR Gene Dependency 1.0 2.00083 GSE158834_0_v_13_palm_human RummaGEO Gene Perturbation Signatures 1.0 null GSE193258,GSE193259_9_v_14_osimertinib_human RummaGEO Drug Perturbation Signatures 1.0 null SAPCD2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.47001 DNAL1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.30959 TET1 ChEA Transcription Factor Targets 1.0 null HCC1162 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.873777 GTEX-XPVG-2126-SM-4B667 GTEx Tissue Sample Gene Expression Profiles 1.0 1.38791 spleen_3b HPA Tissue Sample Gene Expression Profiles 1.0 0.922705 GTEX-XAJ8-0126-SM-47JYG GTEx Tissue Sample Gene Expression Profiles 1.0 0.865537 H3K4me1_ES-Bruce4_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null NCI-H2170 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.892467 SOX30 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.06752 GTEX-XMD1-0526-SM-4AT4Z GTEx Tissue Sample Gene Expression Profiles 1.0 0.885733 ChIP_POU5F1_18347094 ESCAPE Omics Signatures of Genes and Proteins for Stem Cells 1.0 null CARS1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.77059 GTEX-T6MO-1426-SM-4DM73 GTEx Tissue Sample Gene Expression Profiles 1.0 0.934568 HC-92-HE59_10uM NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles -1.0 -0.246395 CS CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.66443 GSE180185_7_v_5_setbp1_human RummaGEO Gene Perturbation Signatures -1.0 null EKVX Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.04036 PANC 08.13 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles -1.0 -1.99645 GTEX-RTLS-0008-SM-48FET GTEx Tissue Sample Gene Expression Profiles -1.0 -0.884804 T-47D Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles -1.0 -1.99645 hsa-miR-1469 TargetScan Predicted Conserved microRNA Targets 1.0 0.670641 AGPS CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.52159 MM.1S Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles 1.0 1.54095 GTEX-R55F-1526-SM-2TF4X GTEx Tissue Sample Gene Expression Profiles -1.0 -1.24404 GSE60217_1_v_9_inosine_human RummaGEO Drug Perturbation Signatures -1.0 null GTEX-U3ZN-0626-SM-3DB7U GTEx Tissue Sample Gene Expression Profiles -1.0 -0.979472 HCC33 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.954128 SMG9 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.60408 GTEX-R3RS-0005-SM-3GAEH GTEx Tissue Sample Gene Expression Profiles -1.0 -1.95923 GTEX-RU72-2626-SM-4GIE1 GTEx Tissue Sample Gene Expression Profiles 1.0 1.18212 PNO1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.11234 RAJI Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles 1.0 0.936959 SUP-B15 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles -1.0 -1.16485 GTEX-T5JW-0426-SM-4DM7M GTEx Tissue Sample Gene Expression Profiles 1.0 1.06301 GTEX-R55G-1126-SM-48FDG GTEx Tissue Sample Gene Expression Profiles -1.0 -1.19532 RPMI 8226 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles 1.0 1.36066 KMS-12-PE Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles 1.0 1.32457 GSE242290_1_v_0_glutathione_human RummaGEO Drug Perturbation Signatures -1.0 null GTEX-U3ZM-0008-SM-4DXTQ GTEx Tissue Sample Gene Expression Profiles -1.0 -0.881306 GTEX-XQ3S-0926-SM-4BOPI GTEx Tissue Sample Gene Expression Profiles 1.0 0.886802 GSE173810_0_v_3_igf2_mouse RummaGEO Gene Perturbation Signatures 1.0 null GTEX-X5EB-0008-SM-46MU3 GTEx Tissue Sample Gene Expression Profiles -1.0 -1.11811 PMC7498599-41467_2020_18508_MOESM11_ESM.xlsx-4cell_CTCF-Unnamed_1_CTCF Rummagene Transcription Factor Associations 2026 1.0 null heart_5a HPA Tissue Sample Gene Expression Profiles -1.0 -0.980399 NFIX JASPAR Predicted Human Transcription Factor Targets 2025 1.0 39.9588 BLVRB CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.23234 SRRT CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.22526 8MGBA CCLE Cell Line Gene CNV Profiles 1.0 1.81718 dorsolateral prefrontal cortex_8 yrs_M_12981 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq -1.0 -1.55375 LCLC-97TM1 Klijn et al., Nat. 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Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.5871 GTEX-X5EB-1926-SM-4E3IW GTEx Tissue Sample Gene Expression Profiles 1.0 0.852687 CCDC28B CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.02859 SHOC1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.25786 GTEX-XUJ4-0004-SM-4BOQE GTEx Tissue Sample Gene Expression Profiles -1.0 -0.8613 DETROIT 562 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.09909 GTEX-Q2AH-1826-SM-2S1Q2 GTEx Tissue Sample Gene Expression Profiles -1.0 -1.90101 MOB3C CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.22942 ATXN7L2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.36515 PYCR2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.97773 GSE221327_10_v_2_clpp_human RummaGEO Gene Perturbation Signatures 1.0 null inferolateral temporal cortex (area TEv, area 20)_8 yrs_M_12981 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq -1.0 -2.50596 ELK3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.81101 GTEX-NL3H-0011-R11A-SM-2I3E6 GTEx Tissue Sample Gene Expression Profiles 1.0 0.98737 H2AC11 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.67259 H3K27me3_G1E_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE113817_0_v_1_bach1_human RummaGEO Gene Perturbation Signatures -1.0 null GTEX-WFON-2026-SM-4LVMW GTEx Tissue Sample Gene Expression Profiles 1.0 1.54383 GTEX-OHPM-1626-SM-2HMK4 GTEx Tissue Sample Gene Expression Profiles -1.0 -0.923611 GTEX-QVUS-0006-SM-3GAE8 GTEx Tissue Sample Gene Expression Profiles -1.0 -1.16317 SLC66A3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.50461 COLO 800 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles -1.0 -1.16485 ERRFI1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.34785 NCI-N417 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.21246 SK-MEL-31 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.850123 GTEX-XQ3S-1726-SM-4BOOD GTEx Tissue Sample Gene Expression Profiles 1.0 1.30386 TBC1D1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.51232 BA-56-QV45_10uM NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles 1.0 0.210582 H3K36me3_ES-E14_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null TEAD4 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 17.6858 ETS2 MotifMap Predicted Transcription Factor Targets 1.0 null GTEX-VUSH-0004-SM-3P61T GTEx Tissue Sample Gene Expression Profiles -1.0 -1.54376 NR1H4::RXRA JASPAR Predicted Human Transcription Factor Targets 2025 1.0 28.1099 GTEX-QLQW-1226-SM-2S1Q9 GTEx Tissue Sample Gene Expression Profiles -1.0 -0.968117 U118MG DepMap CRISPR Gene Dependency 1.0 2.10102 GTEX-RNOR-0526-SM-2TF4O GTEx Tissue Sample Gene Expression Profiles -1.0 -0.937015 IFT80 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.53331 GTEX-X585-0011-R11B-SM-46MUZ GTEx Tissue Sample Gene Expression Profiles 1.0 1.44837 ANKLE1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.81368 H3K4me3_brain_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null DCAF4 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.90521 GTEX-U3ZM-1526-SM-3DB9D GTEx Tissue Sample Gene Expression Profiles 1.0 1.17004 NCI-H2081 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.33947 GTEX-RWSA-0005-SM-2XCAO GTEx Tissue Sample Gene Expression Profiles -1.0 -1.67024 NALM16 DepMap CRISPR Gene Dependency 1.0 2.15817 GTEX-OIZI-0008-SM-2XCFD GTEx Tissue Sample Gene Expression Profiles -1.0 -1.68275 GTEX-XXEK-0126-SM-4BRVU GTEx Tissue Sample Gene Expression Profiles 1.0 0.953823 OTOL1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.27617 NCI-H1373 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.38413 Perturb_7931_KD_ZFC3H1_SRP222099 PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 1.7014 CDX4 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.3395 MAPK8IP1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.47352 SNU-620 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles 1.0 0.933334 GSE221327_1_v_9_clpp_human RummaGEO Gene Perturbation Signatures 1.0 null JHOC5 CCLE Cell Line Gene CNV Profiles 1.0 1.37149 ZNF207 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.25239 GSE207282_1_v_0_polydatin_human RummaGEO Drug Perturbation Signatures -1.0 null GTEX-X8HC-2726-SM-46MUA GTEx Tissue Sample Gene Expression Profiles 1.0 1.08599 GSE202434,GSE202438_4_v_5_talazoparib_human RummaGEO Drug Perturbation Signatures 1.0 null Tcf21 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 28.6254 hippocampus (hippocampal formation)_9 pcw_M_12833 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq -1.0 -0.875471 AC-35-CK01_10uM NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles 1.0 0.244656 H3K4me3_ES-E14_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null GTEX-U8XE-1026-SM-4E3HM GTEx Tissue Sample Gene Expression Profiles -1.0 -1.25314 GTEX-O5YT-1826-SM-32PK9 GTEx Tissue Sample Gene Expression Profiles -1.0 -1.47196 mRNA_RXRA_19796622 ESCAPE Omics Signatures of Genes and Proteins for Stem Cells -1.0 null 496100461_PCx_possible Alzheimer's disease_TBI_89_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.31397 GTEX-T5JC-0001-SM-3NMAK GTEx Tissue Sample Gene Expression Profiles -1.0 -0.823938 GTEX-WFG8-0726-SM-3GILP GTEx Tissue Sample Gene Expression Profiles -1.0 -1.53711 KMRC3 CCLE Cell Line Gene CNV Profiles -1.0 -1.47134 testis_7b HPA Tissue Sample Gene Expression Profiles 1.0 1.13525 AD-51-FB60_0.01uM NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles -1.0 -0.336202 ERVV-2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.59751 H3K9ac_ES-Bruce4_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null GSE213153_1_v_0_ulixertinib_human RummaGEO Drug Perturbation Signatures 1.0 null GSE176008_8_v_5_azacitidine_human RummaGEO Drug Perturbation Signatures 1.0 null GTEX-XQ3S-0426-SM-4BOOA GTEx Tissue Sample Gene Expression Profiles -1.0 -0.92809 H3K4me1_ES-E14_mm9_2 ENCODE Histone Modification Site Profiles 1.0 null XPNPEP3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.79944 POU6F1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.64516 496100409_FWM_no dementia_TBI_85_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.12629 PMC6335596-mmc2.xlsx-RNA-seq_Day_12_GATA6_Het-Genes_significantly_differentially_expressed_between_H9_and_GATA6_4ins_at_day_12_in_RNA-seq_GATA6 Rummagene Transcription Factor Associations 2026 1.0 null SVIP CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.17533 GTEX-PWN1-2426-SM-48TDD GTEx Tissue Sample Gene Expression Profiles 1.0 1.28527 Perturb_9104_KD_KDM4C_SRP202026 PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 -1.98988 CALU-6 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles -1.0 -1.00616 BMP2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.44319 GPAT4 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.59735 GSE174498,GSE174500_0_v_8_asparaginase_human RummaGEO Drug Perturbation Signatures -1.0 null GTEX-RTLS-1226-SM-46MUP GTEx Tissue Sample Gene Expression Profiles 1.0 0.842346 PMC11295044-pnas.2403331121.sapp.pdf-213-ZNF716_ZNF716 Rummagene Transcription Factor Associations 2026 1.0 null NCI-H1651 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.09909 GTEX-TMZS-0008-SM-47JWM GTEx Tissue Sample Gene Expression Profiles -1.0 -0.836424 GSE146982_0_v_2_metformin_human RummaGEO Drug Perturbation Signatures 1.0 null FADS1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.12028 501A Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.926857 ventrolateral prefrontal cortex_17 pcw_F_12880 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq 1.0 0.904276 GTEX-P4QS-0926-SM-48TBS GTEx Tissue Sample Gene Expression Profiles 1.0 0.893049 GSE173810_0_v_1_igf2_mouse RummaGEO Gene Perturbation Signatures 1.0 null GSE226439,GSE226441_6_v_2_hnf4g_human RummaGEO Gene Perturbation Signatures 1.0 null GSE173394_1_v_0_nfatc2_human RummaGEO Gene Perturbation Signatures 1.0 null H3K9ac_ES-E14_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null ITPRIP CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.46247 GTEX-RNOR-2426-SM-48FDY GTEx Tissue Sample Gene Expression Profiles 1.0 0.995805 GTEX-NL4W-0008-SM-4E3I2 GTEx Tissue Sample Gene Expression Profiles -1.0 -1.54527 GTEX-QLQ7-0526-SM-2I5G3 GTEx Tissue Sample Gene Expression Profiles -1.0 -1.04285 GSE132694,GSE132717_0_v_2_meis1_human RummaGEO Gene Perturbation Signatures -1.0 null GSE234514,GSE234516_2_v_3_palbociclib_human RummaGEO Drug Perturbation Signatures -1.0 null H3K27me3_small intestine_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null ERF::NHLH1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 63.1843 GTEX-UJHI-1226-SM-4IHLR GTEx Tissue Sample Gene Expression Profiles 1.0 1.01917 GSE77108_8_v_2_saha_human RummaGEO Drug Perturbation Signatures 1.0 null GTEX-VUSG-0926-SM-3GIK6 GTEx Tissue Sample Gene Expression Profiles -1.0 -1.12034 IFT172 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.54113 GSE242290_3_v_0_glutathione_human RummaGEO Drug Perturbation Signatures -1.0 null NCI-H345 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles 1.0 1.36691 GSE201309_5_v_3_matrine_human RummaGEO Drug Perturbation Signatures 1.0 null GSE235066_7_v_0_cisplatin_human RummaGEO Drug Perturbation Signatures 1.0 null SAMM50 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.79697 PRELID3B CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.69741 HUP-T3 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles -1.0 -0.926685 TTC17 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.9452 GTEX-OIZH-1626-SM-2HMKI GTEx Tissue Sample Gene Expression Profiles -1.0 -0.888668 PMC6604319-13072_2019_278_MOESM3_ESM.xlsx-CEM_ect_TET2_DEGs_DMRs_hDMRs-Unnamed_4_TET2 Rummagene Transcription Factor Associations 2026 1.0 null NUF2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.43648 GTEX-QV44-0526-SM-2S1RE GTEx Tissue Sample Gene Expression Profiles -1.0 -0.868374 RGMB CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.37002 GTEX-X585-1226-SM-46MW7 GTEx Tissue Sample Gene Expression Profiles 1.0 0.918042 ZE-14-BN99_0.1uM NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles -1.0 -0.258871 HMY-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.97401 GSE168918_1_v_0_tmprss4_human RummaGEO Gene Perturbation Signatures 1.0 null PDCD1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.82919 primary visual cortex (striate cortex, area V1/17)_16 pcw_M_12837 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq 1.0 0.959022 UMUC14 DepMap CRISPR Gene Dependency 1.0 2.68182 PMC11024925-mmc3.xlsx-Gene_lists-MV411_FOS_ChIP_and_RNA_overlap_after_10_nM_Gilteritinib_FOS Rummagene Transcription Factor Associations 2026 1.0 null H9 Cells Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles -1.0 -1.38873 dorsolateral prefrontal cortex_11 yrs_F_12289 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq -1.0 -1.32628 GTEX-P4PP-0126-SM-3LK69 GTEx Tissue Sample Gene Expression Profiles 1.0 0.899741 mRNA_NANOG_19796622 ESCAPE Omics Signatures of Genes and Proteins for Stem Cells 1.0 null IMR32 CCLE Cell Line Gene CNV Profiles -1.0 -2.27873 NCCIT COSMIC Cell Line Gene CNV Profiles 1.0 4.51153 GTEX-TKQ2-0826-SM-33HB6 GTEx Tissue Sample Gene Expression Profiles -1.0 -1.31757 GSE158834_2_v_6_palmitic acid_human RummaGEO Drug Perturbation Signatures 1.0 null H3K4me3_megakaryocyte_mm9_2 ENCODE Histone Modification Site Profiles 1.0 null PK1 DepMap CRISPR Gene Dependency 1.0 2.2859 GTEX-S7SE-0326-SM-4AT5Q GTEx Tissue Sample Gene Expression Profiles 1.0 1.78079 GTEX-WFG7-0001-SM-3P61S GTEx Tissue Sample Gene Expression Profiles -1.0 -1.35395 C2CD2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.42816 GTEX-XMK1-2026-SM-4B65K GTEx Tissue Sample Gene Expression Profiles 1.0 1.67596 tonsil HPA Tissue Protein Expression Profiles -1.0 -1.12208 G142 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles 1.0 0.863358 GTEX-XOTO-0011-R11B-SM-4B64O GTEx Tissue Sample Gene Expression Profiles 1.0 0.957269 H3K4me1_lung_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null TEAD2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 22.3247 ZNF142 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.80935 TYK-NU.CP-R Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.12032 GTEX-Q2AI-1226-SM-48U14 GTEx Tissue Sample Gene Expression Profiles 1.0 1.974 HDGFL3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.45667 NCI-H2198 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.04994 TYK-NU Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles 1.0 1.04024 TNP2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.26128 GSE102467_1_v_0_pazopanib_human RummaGEO Drug Perturbation Signatures 1.0 null skin_6a HPA Tissue Sample Gene Expression Profiles 1.0 1.05303 GSE217776,GSE217829_1_v_6_sgf29_human RummaGEO Gene Perturbation Signatures 1.0 null RPUSD4 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.13238 CDK10 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.03474 PC3 DepMap CRISPR Gene Dependency 1.0 2.34425 GSE77108_4_v_2_saha_human RummaGEO Drug Perturbation Signatures 1.0 null GTEX-QCQG-0226-SM-48U28 GTEx Tissue Sample Gene Expression Profiles 1.0 1.09788 GTEX-XQ8I-0926-SM-4BOOF GTEx Tissue Sample Gene Expression Profiles 1.0 0.842794 ANKMY2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.75607 NKX2-3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.70536 GTEX-TKQ2-1526-SM-4DXUN GTEx Tissue Sample Gene Expression Profiles 1.0 1.84135 GSE195713_0_v_1_lapatinib_human RummaGEO Drug Perturbation Signatures 1.0 null GTEX-VJYA-1426-SM-4KL1Y GTEx Tissue Sample Gene Expression Profiles 1.0 1.55757 GTEX-T5JW-0126-SM-4DM6K GTEx Tissue Sample Gene Expression Profiles 1.0 1.15601 posteroventral (inferior) parietal cortex_21 yrs_F_13057 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq -1.0 -1.00437 brownfat BioGPS Mouse Cell Type and Tissue Gene Expression Profiles 1.0 1.12395 COQ10A CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.1936 GPATCH8 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.79886 CLCN6 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.44025 GTEX-WRHU-0226-SM-3MJFV GTEx Tissue Sample Gene Expression Profiles 1.0 0.846181 TBX5 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 22.084 GTL-16 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles -1.0 -1.09344 posteroventral (inferior) parietal cortex_19 pcw_F_12885 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq 1.0 1.04451 HEY Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles -1.0 -1.99877 496100618_PCx_probable Alzheimer's disease_no TBI_86_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.29428 ZNF808 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.06233 NCI-H1793 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles -1.0 -1.12654 NCI-H1930 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles 1.0 1.56389 H3K4me3_kidney_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null GSE154577_7_v_12_plagl1_human RummaGEO Gene Perturbation Signatures -1.0 null SLC2A6 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.4029 GTEX-UTHO-2426-SM-4JBHD GTEx Tissue Sample Gene Expression Profiles 1.0 1.02289 ZNF615 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.03883 LRATD1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.82559 LS123 DepMap CRISPR Gene Dependency 1.0 2.28189 CTDP1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.15524 amygdaloid complex_15 yrs_M_12299 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq -1.0 -0.84292 NEK3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.20933 dorsolateral prefrontal cortex_1 yrs_F_12830 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq -1.0 -1.0991 testis_7d HPA Tissue Sample Gene Expression Profiles 1.0 1.11498 CCNF CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.89472 GTEX-SE5C-0626-SM-2XCDV GTEx Tissue Sample Gene Expression Profiles -1.0 -0.989911 HCC1187 CCLE Cell Line Gene CNV Profiles 1.0 1.48926 KURAMOCHI Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles 1.0 0.864953 posterior (caudal) superior temporal cortex (area 22c)_21 yrs_F_13057 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq -1.0 -1.21271 GOLGA8B CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.80561 OVCA 420 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.892467 OVCA 420 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles -1.0 -1.56571 DOT1L CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.35509 hippocampus (hippocampal formation)_8 yrs_M_12981 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq -1.0 -1.06247 UBL5 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.37903 GTEX-UPK5-0326-SM-3GAF3 GTEx Tissue Sample Gene Expression Profiles -1.0 -1.27715 inferolateral temporal cortex (area TEv, area 20)_2 yrs_F_12979 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq 1.0 0.882374 PARP9 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.68327 PROSER3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.51897 GSE234340_12_v_7_muc2_mouse RummaGEO Gene Perturbation Signatures 1.0 null Yy1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 18.339 ERF::SREBF2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 26.5936 GTEX-VUSG-0006-SM-3GIK9 GTEx Tissue Sample Gene Expression Profiles -1.0 -0.978017 H3K4me3_heart_mm9_2 ENCODE Histone Modification Site Profiles 1.0 null GTEX-XMD1-0008-SM-4AT41 GTEx Tissue Sample Gene Expression Profiles -1.0 -0.951637 primary somatosensory cortex (area S1, areas 3,1,2)_21 yrs_F_13057 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq -1.0 -0.950418 RNF112 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.34388 ZDHHC22 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.65323 MTF2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.63464 GTEX-RN64-1826-SM-48FDV GTEx Tissue Sample Gene Expression Profiles 1.0 0.98951 TAS2R5 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.12266 fertilizedegg BioGPS Mouse Cell Type and Tissue Gene Expression Profiles -1.0 -1.72901 AC-84-QG99_1uM NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles -1.0 -0.949231 CTCF_thymus_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null TSPAN6 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.58724 GTEX-O5YW-0326-SM-2I5EI GTEx Tissue Sample Gene Expression Profiles -1.0 -1.71804 JM1 DepMap CRISPR Gene Dependency 1.0 2.89842 JURKAT, CLONE E6-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles 1.0 1.23887 GSE147876,GSE147877_4_v_7_enzalutamide_human RummaGEO Drug Perturbation Signatures 1.0 null GTEX-S4P3-0926-SM-4AD54 GTEx Tissue Sample Gene Expression Profiles 1.0 0.943787 H3K9ac_liver_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null GTEX-T2IS-0011-R3A-SM-32QPB GTEx Tissue Sample Gene Expression Profiles -1.0 -1.93713 H3K4me1_olfactory bulb_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null CAL-120 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles -1.0 -1.4371 UBB_KO_GDS3906_496_mouse_Testis - 28 Days GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null GTEX-XMK1-0001-SM-4B64F GTEx Tissue Sample Gene Expression Profiles -1.0 -0.842231 HEL Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles 1.0 1.18724 CAS1 DepMap CRISPR Gene Dependency 1.0 2.29159 AKNA CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.14372 posteroventral (inferior) parietal cortex_2 yrs_F_12979 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq 1.0 1.11743 LN340 DepMap CRISPR Gene Dependency 1.0 2.14629 B4GALT2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.60826 primary motor cortex (area M1, area 4)_11 yrs_F_12289 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq -1.0 -1.03118 H3K4me1_liver_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null GSE139975_3_v_0_rnf2_mouse RummaGEO Gene Perturbation Signatures 1.0 null cerebellar cortex_18 yrs_M_12984 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq 1.0 1.683 GSE237053_1_v_0_comt_human RummaGEO Gene Perturbation Signatures 1.0 null PANC 02.03 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles -1.0 -1.99877 NCIH1092 DepMap CRISPR Gene Dependency 1.0 2.53809 cerebellar cortex_36 yrs_M_12302 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq 1.0 1.51627 OVCAR-5 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles -1.0 -1.4371 EBF2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.92424 RAP2C CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.8752 FAM210A CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.48161 GTEX-N7MS-0011-R3a-SM-33HC6 GTEx Tissue Sample Gene Expression Profiles -1.0 -1.32628 PMC10319804-41467_2023_38747_MOESM9_ESM.xlsx-KHSRP_KD_genes_up-gene_name_AR Rummagene Transcription Factor Associations 2026 1.0 null HOXC11 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.43858 GTEX-PX3G-2426-SM-48TZZ GTEx Tissue Sample Gene Expression Profiles 1.0 0.924093 mRNA_ESX1_19796622 ESCAPE Omics Signatures of Genes and Proteins for Stem Cells 1.0 null GTEX-QEG4-0008-SM-48TYZ GTEx Tissue Sample Gene Expression Profiles -1.0 -0.949054 GTEX-SNOS-1126-SM-4DM67 GTEx Tissue Sample Gene Expression Profiles 1.0 2.11901 GTEX-WHSE-0011-R11A-SM-3P5YY GTEx Tissue Sample Gene Expression Profiles 1.0 1.18352 KASUMI-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles 1.0 1.48925 Perturb_3978_KD_KAT5_SRP128080 PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 13.4164 GTEX-XBEC-0126-SM-4GIDT GTEx Tissue Sample Gene Expression Profiles 1.0 1.8948 GTEX-OIZH-1826-SM-2YUNP GTEx Tissue Sample Gene Expression Profiles -1.0 -1.19072 hippocampus (hippocampal formation)_11 yrs_F_12289 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq -1.0 -3.51575 ventrolateral prefrontal cortex_35 pcw_F_12295 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq 1.0 2.11605 ps90 TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.918 CCDC8 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.31241 GTEX-S4Z8-2026-SM-3K2A9 GTEx Tissue Sample Gene Expression Profiles -1.0 -0.953449 GTEX-TMZS-0326-SM-3DB9P GTEx Tissue Sample Gene Expression Profiles -1.0 -0.907835 ALG13 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.06482 RIPPLY3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.06532 GSE202359_1_v_0_rbpms_mouse RummaGEO Gene Perturbation Signatures 1.0 null GSE158834_11_v_13_palm_human RummaGEO Gene Perturbation Signatures 1.0 null ST6GAL2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.79533 ZDHHC5 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.31518 C14orf93 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.86564 GTEX-UPIC-1626-SM-4IHKT GTEx Tissue Sample Gene Expression Profiles 1.0 1.14182 DAZAP2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.73148 GTEX-R55C-0005-SM-3GAE9 GTEx Tissue Sample Gene Expression Profiles -1.0 -1.04072 GSE169356_2_v_3_ivermectin_human RummaGEO Drug Perturbation Signatures -1.0 null ATXN10 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.0474 NAPB CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.03538 ZNF691 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.3939 AFAP1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.80874 SW 948 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.09909 DAN-G Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles -1.0 -1.0011 GSE171837_3_v_2_bortezomib_human RummaGEO Drug Perturbation Signatures 1.0 null TK-10 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.20575 GTEX-OOBJ-0326-SM-33HBO GTEx Tissue Sample Gene Expression Profiles -1.0 -0.999372 SUM 229PE Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.02582 NADK2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.07369 CASD1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.29688 spleen GTEx Tissue Gene Expression Profiles 1.0 1.23074 PMC12178829-mmc4.xlsx-Sheet_4-MEG3-KD_Up-GeneName_AR Rummagene Transcription Factor Associations 2026 1.0 null GTEX-XUZC-1726-SM-4BRWS GTEx Tissue Sample Gene Expression Profiles 1.0 0.827222 GTEX-V955-2426-SM-3GAEF GTEx Tissue Sample Gene Expression Profiles -1.0 -1.02155 H3K4me1_embryonic fibroblast_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null testis_4a HPA Tissue Sample Gene Expression Profiles 1.0 1.08888 ZDHHC4 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.53154 GTEX-U3ZM-1626-SM-4DXSK GTEx Tissue Sample Gene Expression Profiles 1.0 1.72567 PC CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.1925 kidney BioGPS Mouse Cell Type and Tissue Gene Expression Profiles 1.0 1.02987 NCI-H520 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles -1.0 -0.830358 SLC39A9 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.71676 GTEX-WEY5-0426-SM-3GIKT GTEx Tissue Sample Gene Expression Profiles -1.0 -2.81122 PMC7371429-elife-53600-supp2.xlsx-annotated_MEIS1_in_B13ko-M1-Nearest_Ensembl_MEIS1 Rummagene Transcription Factor Associations 2026 1.0 null GSE221327_10_v_0_clpp_human RummaGEO Gene Perturbation Signatures 1.0 null GTEX-SNMC-1426-SM-2XCFM GTEx Tissue Sample Gene Expression Profiles -1.0 -1.2257 CACO2 CCLE Cell Line Gene CNV Profiles -1.0 -1.32533 COG4 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.63687 H3K4me3_G1E-ER4_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null thyroid BioGPS Mouse Cell Type and Tissue Gene Expression Profiles -1.0 -1.35792 USP15 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.34906 FAM234B CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.13901 posterior (caudal) superior temporal cortex (area 22c)_11 yrs_F_12289 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq -1.0 -1.01448 Acquired Immunodeficiency Syndrome DisGeNET Gene-Phenotype Associations 1.0 null CREB1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 17.7614 smooth muscle HPA Tissue Protein Expression Profiles -1.0 -1.12208 posterior (caudal) superior temporal cortex (area 22c)_15 yrs_M_12299 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq -1.0 -1.76317 NCI-H1838 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -3.43479 SW954 DepMap CRISPR Gene Dependency 1.0 2.90283 PIM1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.68974 ROM1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.36337 MOLM-16 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.954128 GSE216043_3_v_9_cisplatin_human RummaGEO Drug Perturbation Signatures 1.0 null PGAP4 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.63677 GSE226249_0_v_1_pirfenidone_human RummaGEO Drug Perturbation Signatures -1.0 null CDK4 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.03997 GSE234340_3_v_7_muc2_mouse RummaGEO Gene Perturbation Signatures 1.0 null GOLM2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.1901 parathyroid gland HPA Tissue Protein Expression Profiles 1.0 0.931102 GTEX-OIZG-0008-SM-4E3J2 GTEx Tissue Sample Gene Expression Profiles -1.0 -0.831469 NCI-H2052 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.949768 GSE196343_1_v_0_metformin_human RummaGEO Drug Perturbation Signatures -1.0 null CTCF_kidney_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null adrenal gland HPA Tissue Protein Expression Profiles 1.0 2.92081 KG-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles 1.0 0.930778 CDC42BPG CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.71572 dorsolateral prefrontal cortex_2 yrs_F_12979 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq 1.0 1.00615 inferolateral temporal cortex (area TEv, area 20)_4 mos_M_12296 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq -1.0 -0.921869 posterior (caudal) superior temporal cortex (area 22c)_19 pcw_F_12885 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq 1.0 0.940073 CHP126 CCLE Cell Line Gene CNV Profiles -1.0 -2.14071 GSE77108_6_v_2_saha_human RummaGEO Drug Perturbation Signatures 1.0 null primary visual cortex (striate cortex, area V1/17)_2 yrs_F_12979 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq 1.0 1.45182 GTEX-O5YT-0526-SM-32PK8 GTEx Tissue Sample Gene Expression Profiles -1.0 -0.919043 NCIH1650 DepMap CRISPR Gene Dependency 1.0 2.19045 Nfatc1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 21.471 mRNA_SMAD7_19796622 ESCAPE Omics Signatures of Genes and Proteins for Stem Cells -1.0 null GTEX-WRHU-0926-SM-4E3IG GTEx Tissue Sample Gene Expression Profiles 1.0 1.09114 GSE140322_0_v_1_imatinib_human RummaGEO Drug Perturbation Signatures 1.0 null Perturb_10677_KD_MTF2_SRP105765 PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 -20.0 H3K27me3_megakaryocyte_mm9_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null GTEX-O5YT-2126-SM-3MJGD GTEx Tissue Sample Gene Expression Profiles 1.0 1.4904 NCIH522 DepMap CRISPR Gene Dependency 1.0 2.99112 H3K36me3_testis_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null SW 403 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.15743 EML2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.28329 bone marrow HPA Tissue Gene Expression Profiles 1.0 1.40785 HCC2302 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles -1.0 -0.844368 GSE206516,GSE206518_3_v_4_ptdss2_human RummaGEO Gene Perturbation Signatures 1.0 null ventrolateral prefrontal cortex_2 yrs_F_12979 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq 1.0 1.59539 SU-DHL-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles -1.0 -1.24848 PMC9160255-41467_2022_30710_MOESM4_ESM.xlsx-AR_specific_regulated_genes-SYMBOL_AR Rummagene Transcription Factor Associations 2026 1.0 null stomach BioGPS Mouse Cell Type and Tissue Gene Expression Profiles 1.0 0.853438 DCUN1D1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.16985 HS 940.T Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles -1.0 -0.92985 GTEX-WFJO-1026-SM-3GIKL GTEx Tissue Sample Gene Expression Profiles -1.0 -0.876932 cerebellar cortex_8 yrs_M_12981 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq 1.0 0.98255 A704 CCLE Cell Line Gene CNV Profiles -1.0 -1.49936 PMC7498599-41467_2020_18508_MOESM11_ESM.xlsx-ICM_CTCF-Unnamed_1_CTCF Rummagene Transcription Factor Associations 2026 1.0 null GTEX-QEG5-0426-SM-2I5GJ GTEx Tissue Sample Gene Expression Profiles -1.0 -1.39227 OVCAR433 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.65218 GTEX-P78B-0005-SM-2I5GM GTEx Tissue Sample Gene Expression Profiles -1.0 -1.15438 BT16 DepMap CRISPR Gene Dependency 1.0 2.86566 DAGLA CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.64452 GTEX-RTLS-2426-SM-46MUO GTEx Tissue Sample Gene Expression Profiles 1.0 1.01744 KURAMOCHI DepMap CRISPR Gene Dependency 1.0 2.35773 CHD1L CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.34107 GSE234043_3_v_1_abcb1_human RummaGEO Gene Perturbation Signatures -1.0 null RNF126 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.93982 Human Immunodeficiency Virus DisGeNET Gene-Disease Associations 1.0 null GTEX-QDVJ-0426-SM-2I5FW GTEx Tissue Sample Gene Expression Profiles -1.0 -1.13532 GTEX-XMD1-0826-SM-4AT52 GTEx Tissue Sample Gene Expression Profiles 1.0 0.923368 GSE171572_3_v_2_tp53_human RummaGEO Gene Perturbation Signatures 1.0 null IQGAP3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.55359 SLC9A8 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.05319 HNRNPCL1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.8028 TMEM59L CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.57859 HYAL2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.05877 HCC2935 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.861153 Nr1h2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 16.3829 Multipotent progenitor cell_Stomach_Human CellMarker Gene-Cell Type Associations 1.0 null GSE158834_10_v_6_palm_human RummaGEO Gene Perturbation Signatures 1.0 null POU5F1 ChEA Transcription Factor Targets 1.0 null GSE181517_2_v_1_doxorubicin_human RummaGEO Drug Perturbation Signatures 1.0 null KYSE-70 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.83419 PTRH2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.03368 C6orf62 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.61602 JURLMK1 CCLE Cell Line Gene CNV Profiles 1.0 2.11535 KMS-27 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles 1.0 1.45429 FCSK CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.56702 GTEX-TSE9-0526-SM-3DB7Z GTEx Tissue Sample Gene Expression Profiles -1.0 -1.23021 PALS2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.56303 esophagus HPA Tissue Gene Expression Profiles -1.0 -1.02648 PMC6604319-13072_2019_278_MOESM3_ESM.xlsx-CEM_ect_TET2_DEGs_DMRs_hDMRs-CCRF-CEM_EV_vs_ectopic_TET2_TET2 Rummagene Transcription Factor Associations 2026 1.0 null H3K4me3_cerebellum_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null GTEX-NL4W-0006-SM-2I3GH GTEx Tissue Sample Gene Expression Profiles -1.0 -2.20006 Stomach Smooth Muscle Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles 1.0 0.947973 GSE48812_4_v_6_sulforaphane_human RummaGEO Drug Perturbation Signatures 1.0 null GTEX-V1D1-1926-SM-4JBGX GTEx Tissue Sample Gene Expression Profiles 1.0 0.881163 duodenum HPA Tissue Protein Expression Profiles 1.0 0.931102 posterior (caudal) superior temporal cortex (area 22c)_37 pcw_M_263195015 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq 1.0 0.906572 GSE185139_1_v_2_doxorubicin_human RummaGEO Drug Perturbation Signatures 1.0 null IGF2BP2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.66289 GTEX-S4UY-0526-SM-3K2AN GTEx Tissue Sample Gene Expression Profiles -1.0 -1.08314 YIF1A CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.54136 K-562 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles 1.0 1.80175 CLPP_KO_GSE40207_392_mouse_Testis GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null HOP62 DepMap CRISPR Gene Dependency 1.0 2.67792 MKN45 DepMap CRISPR Gene Dependency 1.0 2.31635 H3K4me1_limb_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null PMC8017594-LSA-2019-00332_Table_S1_Table_12.xls-DCX-KD_LIS1-KD_DEGs-LIS1-KD_AR Rummagene Transcription Factor Associations 2026 1.0 null TBX3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.35593 APAF1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -4.56557 gallbladder HPA Tissue Protein Expression Profiles 1.0 0.931102 PMC12183081-41388_2025_3375_MOESM8_ESM.xlsx-Sheet1-Table_S7_List_of_differentially_alternative_splicing_genes_in_osteosarcoma_cell_lines_after_knocking_down_the_YBX1_gene_P_0_05_Related_to_Fig_6C_YBX1 Rummagene Transcription Factor Associations 2026 1.0 null GTEX-R55C-0326-SM-3GAF1 GTEx Tissue Sample Gene Expression Profiles -1.0 -1.73325 anterior (rostral) cingulate (medial prefrontal) cortex_37 yrs_M_12303 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq -1.0 -0.855055 TMCO3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.47066 H3K27me3_G1E_mm9_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null DLG3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.88401 GTEX-POYW-0526-SM-2XCEY GTEx Tissue Sample Gene Expression Profiles -1.0 -1.45476 REL JASPAR Predicted Human Transcription Factor Targets 2025 1.0 18.7647 S0-EE-YEKU_10uM NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles -1.0 -0.243753 HR CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.80724 FUT4 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.66544 GTEX-RU72-0326-SM-2TF5T GTEx Tissue Sample Gene Expression Profiles -1.0 -1.02977 OVCAR-4 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles -1.0 -1.99877 IER5 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.0834 GSE119345_2_v_3_bexarotene_human RummaGEO Drug Perturbation Signatures -1.0 null DDX50 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.68454 RCOR3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.85339 IMR-32 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -2.2498 ZNF12 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -3.23374 T-47D Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.950687 GTEX-S95S-1126-SM-4B64E GTEx Tissue Sample Gene Expression Profiles 1.0 2.38913 G121 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.850123 PROM1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.26903 SUGP1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.89408 GTEX-U8XE-1126-SM-3DB8W GTEx Tissue Sample Gene Expression Profiles -1.0 -2.53328 GTEX-X4XX-0011-R11A-SM-46MWQ GTEx Tissue Sample Gene Expression Profiles 1.0 1.22067 Prdm5 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 35.0284 Pulmonary artery endothelial cell line TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.914 SNAI1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 27.9229 PHB1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.83187 GTEX-SNMC-0008-SM-4DM5A GTEx Tissue Sample Gene Expression Profiles -1.0 -1.04108 GTEX-UPJH-0126-SM-4IHLL GTEx Tissue Sample Gene Expression Profiles 1.0 2.55969 Ptf1a JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 78.4198 GTEX-OIZI-0126-SM-3NB13 GTEx Tissue Sample Gene Expression Profiles 1.0 1.47944 SMG8 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.3805 ICC12 DepMap CRISPR Gene Dependency 1.0 2.54821 GB-57-XV52_10uM NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles 1.0 0.224822 NCI-H209 Klijn et al., Nat. 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