association	dataset	threshold value	standardized value
RKO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19284
PMC10794847-mmc5.xlsx-PIAS1_KD_up-Table_S4_Differentially_expressed_genes_with_PIAS1_knockdown_in_the_progenitors_state_Related_to_Figure_5_AR	Rummagene Transcription Factor Associations 2026	1.0	null
MCAS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.3057
FOSB::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	70.7614
ZNF449	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	60.1094
NBEAL1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.3675
BCL6B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	53.958
POU3F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.7819
PPME1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.61229
ZBTB18	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.5924
SMAD5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.7968
BPTF	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.14764
ADD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.3249
EIF4A2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.65988
USF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	53.7211
UFSP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.35324
TCAF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.45263
HSF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.86488
GSE202434,GSE202438_10_v_5_talazoparib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
496100344_HIP_probable Alzheimer's disease_TBI_100+_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.58744
TEP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.40646
OCI-LY-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02026
hsa-miR-4725-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.13535
SNU-475	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.20791
TIM23 mitochondrial import inner membrane translocase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.13
GSE242367_1_v_0_dpp9_human	RummaGEO Gene Perturbation Signatures	-1.0	null
PSMB8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.7255
PKNOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.921
YY2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.3647
HS2ST1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.69716
ZNF263	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	50.9543
BCL6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	56.6336
MITF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.9986
BEX5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.01618
POLR2L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.28638
RBPJ	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.7527
ATF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.1532
ATF6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.0861
AP5Z1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.85994
RHOXF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.6266
SNU-387	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.19233
MRM3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.67887
Colon transversum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.527
NR4A1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.0929
DB	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.986776
ZNF549	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	131.052
FOSL2_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
FOXA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.0339
HS 69ST	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.20594
MEIS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.9766
GAS2L1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.91852
EWSR1-FLI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	107.8
Bronchus	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
PITX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.4594
FOSL2::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	80.2012
Six4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	21.5929
GSE175787_11_v_0_rhoc_human	RummaGEO Gene Perturbation Signatures	-1.0	null
NCI-H596	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.863406
MAFF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.3369
RARA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	62.6922
BATF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.5885
NKX2-2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.454
HOXC13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.8767
GSE184892_6_v_5_trehalose_human	RummaGEO Drug Perturbation Signatures	-1.0	null
ELK1::SREBF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.4462
Lung	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
Keratin filament	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.268
ZNF770	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	88.7406
ZNF708	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.7444
SOX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.0554
GSE235066_7_v_3_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
ZNF184	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	53.0967
ELF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.838
Esophageal epithelial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.705
FOXD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.1
NCI-H1930	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.97796
RREB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	126.182
RFX5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.1121
FOSL2	ENCODE Transcription Factor Targets	1.0	null
RABL2B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.25272
Plant cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.846
TP63	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	50.1961
Nr1h3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	21.9982
ETV5::FOXO1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	69.2706
EHF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.3521
FIGLA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.2152
NCI-H650	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.884458
GSE80537_3_v_2_adhfe1_human	RummaGEO Gene Perturbation Signatures	1.0	null
MRFAP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.94586
DMS 79	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.15961
hsa-miR-3672	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
ZNF574	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	64.0869
RAB39B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.86868
chr10_87020706_T_C_b38	GTEx eQTL 2025	1.0	1.22915
NCI-H2196	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.24213
GSE175787_5_v_9_rhoc_human	RummaGEO Gene Perturbation Signatures	1.0	null
ETV2::DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.8396
ZNF143	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	81.3057
GSE258991_1_v_4_enzalutamide_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE223893_2_v_9_setd2_human	RummaGEO Gene Perturbation Signatures	1.0	null
ZNF214	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.743
FOSL1::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	64.88
KARPAS-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.864164
ONECUT3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	122.534
ZEB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.465
HNF4A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.1347
HOXA10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.7171
ES-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.15435
MSC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.889
RAD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.64315
CEBPG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.9846
KASUMI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.79413
JUN::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	62.4709
COR-L279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20184
CTCF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	339.393
NFE2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.7741
ZNF816	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	86.6961
TMEM17	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.01882
hsa-miR-4271	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
FOXO1::ELF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.4569
RFX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.3681
CHST1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.62905
Barrett's esophagus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.509
CCDC124	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.48373
GSE168797_2_v_0_cannabidiol_human	RummaGEO Drug Perturbation Signatures	1.0	null
COV413B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28112
EZH1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.82215
UBE2D3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.6906
COV413A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.31333
MIEF2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.40394
SK-MEL-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.52184
GSE118077_7_v_8_sprr5_human	RummaGEO Gene Perturbation Signatures	-1.0	null
BHLHE41	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.5597
CLOCK	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.1241
VCaP cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.095
Endosome lumen	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.156
FERD3L	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	47.8637
ELMOD2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.50092
GSE175787_4_v_6_rhoc_human	RummaGEO Gene Perturbation Signatures	-1.0	null
RARA::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.087
ETV5::FIGLA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	93.3451
TRIR	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.33316
BARHL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.3934
FAM200A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.60822
TFAP2A	JASPAR Predicted Transcription Factor Targets	1.0	null
TAL1::TCF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.4773
GSE167474_2_v_3_naa40_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GABPA_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MED24	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.95572
DLAT	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.04089
SU.86.86	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.927899
FAM98A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.18569
chr10_47981055_A_G_b38	GTEx eQTL 2025	1.0	1.54079
ZBTB26	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.0227
TMTC3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.07501
PMC7617064-EMS151900-supplement-Extended_Data_Figure_7_Source_Data.xlsx-D23_FXR-Logfold_change_threshold_1_0_NR1H4	Rummagene Transcription Factor Associations 2026	1.0	null
AFTPH	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.10443
JDP2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	56.3922
DBP	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.6685
TFAP4::ETV1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	77.2973
NCI-H1703	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.957491
ZNF343	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	62.6331
HCC515	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.40965
NFIL3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.5876
GSE151090_2_v_1_verteporfin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Zfx	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	38.7825
UQCRFS1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.92574
SK-MEL-31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20184
PKNOX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.8051
Stat4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	26.3004
K-562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05533
GSE118077_7_v_2_sprr5_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE184892_4_v_2_trehalose_human	RummaGEO Drug Perturbation Signatures	1.0	null
496100330_PCx_possible Alzheimer's disease_no TBI_100+_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.1231
SW 620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19152
ERI3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.15483
TP53	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.4583
AKIP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.7062
Rfx6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	37.242
ZNF324	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	55.9932
TGIF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.1478
CDX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	50.5645
AFMID	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.33076
GSE213650_3_v_1_everolimus_human	RummaGEO Drug Perturbation Signatures	1.0	null
PA-TU-8988S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.837317
Nr1h2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	22.1536
PLEKHA1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.89513
GSE202434,GSE202438_9_v_14_talazoparib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
FOXP4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.8158
ZNF354A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.7459
YAPC	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.905387
HCC630	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.91127
AP2B1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.82695
SLC7A11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.38527
E2F6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.4808
ESR1_T47D_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H2081	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.974822
MZT1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.74508
GSE175787_4_v_0_rhoc_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Uveal melanoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.619
FOS	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	68.4643
FOXF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.1481
HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	65.5312
UBALD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.17344
PK-45H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.881465
P2RX2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.83389
Husk	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.573
GSE202434,GSE202438_4_v_14_talazoparib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
OVCAR-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.50449
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05533
ZNF76	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	54.566
ASCL2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.05557
THP-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.71031
GSE239844_8_v_5_crizotinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
ZNF684	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	76.694
MYCN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.808
NFIC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	75.5114
GSE175787_11_v_7_rhoc_human	RummaGEO Gene Perturbation Signatures	-1.0	null
RFX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.8733
THRB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	88.7477
TFEC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.333
NCI-H1915	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.917073
GSE193258,GSE193259_5_v_15_osimertinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
PBX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.4455
Esophageal adenocarcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.66
PPIA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.11997
SATB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.9256
Thyroid epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.887
LY6E	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.92796
BNC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.3427
FOSL1::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	73.3969
Thymic medullary epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.523
GSE193258,GSE193259_5_v_6_osimertinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
THRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	88.4011
ZNF692	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.4826
vagina	GTEx Tissue Gene Expression Profiles	1.0	1.27032
MBD5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.82097
GSE239844_6_v_0_crizotinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
USP48	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.57371
KMS-12-PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.40728
SNU-398	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.70827
ESR1_T47D_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MAFA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	88.8392
496100451_TCx_no dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.00737
G122	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.864164
NKX2-8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.9025
Esrrg	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	24.6138
G-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.974822
FOXG1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.264
CD151	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.07706
MC116	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.60269
GSE68229_0_v_1_progesterone_human	RummaGEO Drug Perturbation Signatures	-1.0	null
CDK5R1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.48425
NKX2-5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.9313
C3A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.976149
GSE175787_5_v_10_rhoc_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE130437_0_v_1_palbociclib_human	RummaGEO Drug Perturbation Signatures	1.0	null
NFIB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	63.5217
FBXO41	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.06516
SNAI2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.5371
SU-DHL-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.41241
NKX2-3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.9645
FEZF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	121.381
FAM25	InterPro Predicted Protein Domain Annotations	1.0	null
NFIX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	74.8393
ERF::SREBF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.6767
POU2F1::SOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.9185
KDR	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.75817
Nthy-ori 3-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.611
Barrett's epithelial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.66
ZNF524	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.1223
KYSE-270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23455
KYSE-140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32055
Ascites tumor cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.895
Brain cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.852
SP5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.01998
GSE48812_3_v_10_sulforaphane_human	RummaGEO Drug Perturbation Signatures	-1.0	null
TEAD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.0001
hsa-miR-4461	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
TCF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	49.4248
ZNF317	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	52.2574
CDC14C	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.63896
FGFR1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.0888
Bronchoalveolar system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
ZSCAN21	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.2239
TGIF2LY	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.9265
ZNF699	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.45142
SREBF2	JASPAR Predicted Transcription Factor Targets	1.0	null
E2F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.287
ERF::NHLH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.9994
HSPD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.28655
NEUROG2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.7455
GFI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.9528
ASCL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	134.38
GSC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.2711
USF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.9915
k1	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.585
SK-MM-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.976854
esophagus	GTEx Tissue Gene Expression Profiles	1.0	0.853292
HCC1143	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.46129
IL18BP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.2053
TOMT	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.55319
SLC4A1AP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.99603
COR-L47	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.51046
SCAF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.53352
CTDSP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.88443
GSE162384_1_v_0_tfam_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE118077_1_v_2_sprr5_human	RummaGEO Gene Perturbation Signatures	-1.0	null
ZNF768	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	58.7766
MLXIPL	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.7455
FOXB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.0123
VEZF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.4821
ZFP57	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.1658
HSDL2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.34264
GABPA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.6717
EBF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	50.845
MAX::MYC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.6667
FOSL2::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	77.4923
HOXD9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.3443
PITX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.2644
Rarg	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	50.8386
ZNF341	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.5939
MEF2B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	79.916
Jun	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.771
GSE239844_7_v_5_crizotinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Tfcp2l1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	58.2461
ETV2::FIGLA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.9554
SK-MEL-24	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.40728
NCI-H1373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.905387
TMEM222	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.56161
NCI-H446	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07256
TCF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	47.0683
FZD4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.58912
ACSM1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.5794
MEIS2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.6642
GSE230744,GSE237803_5_v_2_hira_human	RummaGEO Gene Perturbation Signatures	-1.0	null
NR4A2::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.2968
SPIB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.6112
TWIST1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	69.2235
ETV5::DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.9372
RORC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.7488
EEF1G	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-7.82121
FITM2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.84806
POU3F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.8883
MYOG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	53.7302
MAF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	75.525
ZNF135	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	75.8006
RC3H2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.55941
mt3	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.981
496100372_HIP_dementia_no TBI_84_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.0819
PMC12701967-ijmsv23p0161s1.pdf-11-ETS1_ETS1	Rummagene Transcription Factor Associations 2026	1.0	null
NFKB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	82.409
SNU-668	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.9213
HCC44	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.847614
PMC3419980-leu201249x2.xls-RUNX1-ETO_siRE_ChIPSeq_peaks_ge-gene_name_RUNX1	Rummagene Transcription Factor Associations 2026	1.0	null
NUP210	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.06454
RAB40C	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.93859
CABLES1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.9927
BCL11A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.0993
KCNK6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.5931
FOXS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.9251
Atf3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	17.5096
ZNF331	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	68.8925
TBX21	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.5728
SOWAHC	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.02011
ZNF75A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	53.4119
Geep	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.012
ADAM11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.69176
USP35	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.51316
Transcription export complex 2	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.956
OE-33 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.612
ZNF682	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	111.006
GSE245418_0_v_2_cd109_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE186440,GSE186443_2_v_5_daxx_human	RummaGEO Gene Perturbation Signatures	-1.0	null
FOXP1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.0252
ZSCAN31	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	60.2635
Thymic medullary epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.526
REST	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	136.865
FOXL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.123
GSE118077_4_v_2_sprr5_human	RummaGEO Gene Perturbation Signatures	-1.0	null
NFKB2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.7484
ZNF382	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	69.5301
ets_00000000_2008_ovarian_cancer_cells_gof_human_gpl6244_gse21129	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	1.0	0.265514
MEL-HO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02098
NKX2-4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.0284
59M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.26937
ERF::FOXO1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.3297
PC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.863406
FOXA3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.998
TM2D2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.5064
ERF::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.6838
FOXK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.6345
IRF9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.9791
C17orf58	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.39327
GSE175787_4_v_7_rhoc_human	RummaGEO Gene Perturbation Signatures	-1.0	null
ATF7IP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.03589
GSE239844_7_v_9_crizotinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
TCF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.6319
PRDM9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	179.252
FOXC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	65.4418
SCAF4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.5337
POLR2A_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MZF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	75.4835
CTCFL	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	95.742
RAB1B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.61611
FOSL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	76.6337
GSE235587_2_v_0_mitoxantrone_human	RummaGEO Drug Perturbation Signatures	1.0	null
FOXO1::ELK3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.9747
GSE80098,GSE80366_0_v_6_progesterone_human	RummaGEO Drug Perturbation Signatures	1.0	null
GABPA_HeLa-S3_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
FLI1::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	53.883
SW 1573	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.14155
PPARA::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.7838
SCRT1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	47.1686
ERF::FIGLA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	64.1335
PPARD	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.235
ZFP14	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	107.827
ZNF16	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	111.845
496100509_HIP_dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.06707
NEUROD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.8138
PAX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.1095
NCI-H1568	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.15173
NCI-H2198	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.11729
ZNF563	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.82976
GSE193258,GSE193259_5_v_13_osimertinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
PMC7592539-12885_2020_7456_MOESM4_ESM.xlsx-Sup_TableS3_LMS_del_genes_conf-10q22_1_TP63	Rummagene Transcription Factor Associations 2026	1.0	null
Tracheobronchial epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.647
JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	59.8436
NHLH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	64.9911
KLF6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	47.8584
HN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23455
TBX19	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.2505
FOXO4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.2906
Psammoma body	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.312
GSE168797_2_v_5_cannabidiol_human	RummaGEO Drug Perturbation Signatures	1.0	null
CDKN1C	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.73634
DU4475	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.953098
ZNF701	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	68.8331
TFAP4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	85.1813
UMC-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04378
MRPL23	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.18341
Ppara	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	21.8593
PHACTR2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.47187
POLR2A	ENCODE Transcription Factor Targets	1.0	null
FOSL2::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	77.6257
SREBF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	116.407
TMEM216	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.66677
EBF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	90.755
USF2	JASPAR Predicted Transcription Factor Targets	1.0	null
CDX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.7182
TFAP2C	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	275.085
ELF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.6233
FOS::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	76.4457
ZNF777	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.3612
CCNJ	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.31669
POLR2I	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.45068
NCI-H2106	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.24213
TJAP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.14099
hsa-miR-4463	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
ZNF213	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	169.568
GSE131903_0_v_2_abca12_human	RummaGEO Gene Perturbation Signatures	-1.0	null
CFPAC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.905387
GSE227592_4_v_1_adar_human	RummaGEO Gene Perturbation Signatures	-1.0	null
OCI-M2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.78677
MKN-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.974822
ZNF766	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.2492
IKZF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.4011
TP53	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.37498
GSE160001,GSE160670_3_v_2_lapatinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.714
POU3F4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.0317
ZNF384	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	195.696
PMC12619835-41467_2025_66007_MOESM12_ESM.xlsx-KLF5_activated_H3K27ac_AsPC1-Nearest_Gene_Name_KLF5	Rummagene Transcription Factor Associations 2026	1.0	null
CHP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.32481
ZNF157	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.5634
TP63-22573176-HFKS-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
GSE131565_1_v_0_cannabidiol_human	RummaGEO Drug Perturbation Signatures	1.0	null
TOX4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.2358
MEF2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	108.301
T-47D	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.55305
TGIF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.3178
ESR2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	78.5003
PAX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.8274
MT-4 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.118
CRX	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.6155
TEAD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.1521
ARVCF	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.97977
RORB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.5849
STAT5A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.94546
Gican	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.428
FOXD2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	56.1615
GSE228017_0_v_1_parthenolide_human	RummaGEO Drug Perturbation Signatures	1.0	null
POU2F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	47.8741
chr10_47997137_T_C_b38	GTEx eQTL 2025	1.0	3.84312
ZNF530	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	106.454
ZW10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.23988
JL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.63701
FOSL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	65.8619
IRF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	49.5471
ETV5::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.2162
GSE239844_6_v_5_crizotinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
KLF5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	168.228
RBM5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.84485
ZBTB12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.0709
POU2F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.7266
ZNF554	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.89233
FOXO6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.0913
PAX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	70.4884
kidney	GTEx Tissue Gene Expression Profiles	-1.0	-1.17482
LAN-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.708
SETX	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.53163
SCRT2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	53.6264
SP3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	79.0173
FDXACB1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.14479
ZKSCAN3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	148.586
GSE239844_8_v_0_crizotinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
ESR1	ENCODE Transcription Factor Targets	1.0	null
IRF5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.9154
GSE236228_0_v_1_penfluridol_human	RummaGEO Drug Perturbation Signatures	1.0	null
SNAI3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	79.0442
NFATC4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.996
ZSCAN29	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.9854
PLAG1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	92.2778
ZNF460	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	169.739
IGSF9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.9006
HAND2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.5422
SLTM	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.10093
Hand1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	30.7552
OVSAHO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.65075
GSE80537_0_v_2_adhfe1_human	RummaGEO Gene Perturbation Signatures	1.0	null
NRIP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.94459
Meningioma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.122
Exocarp	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.509
ZBTB24	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	181.999
HCC1569	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05533
ATP1B1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.57919
IKZF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	53.2717
DMAC2L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.28399
Hic1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	17.4253
UNC5B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.83447
Early endosome lumen	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.238
ZKSCAN1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.5907
HDGFL3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.45667
Nr1h4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	22.3294
ZIM3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.8627
IMPDH1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.45435
ZBTB11	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.9795
ZSCAN4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.1099
GSE48812_11_v_10_sulforaphane_human	RummaGEO Drug Perturbation Signatures	-1.0	null
ZNF652	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.0595
Pericarp	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.212
SJCRH30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12139
FOXK2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.1815
WM-115	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.60746
EPLC-272H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.986776
TEAD1	JASPAR Predicted Transcription Factor Targets	1.0	null
ZBTB17	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.8523
GSE178714_6_v_0_smad2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
PAX9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.1237
ZNF354C	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.625
CBFA2T3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.58171
TCN2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.1464
SP8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	70.4181
IRX1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.32525
FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.0464
C7orf25	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.61877
LAN-5 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.713
skin	GTEx Tissue Gene Expression Profiles	1.0	1.41191
Atoh1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	28.0012
GOLM1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.63961
CRELD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.49323
PAX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.1
GLIS2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	64.0107
RXRG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	144.488
HIC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	60.1061
NR2F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.1402
TIPARP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.45461
TFAP2D	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.258
ZNF606	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.19304
NCI-H820	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.879429
GSE175787_5_v_0_rhoc_human	RummaGEO Gene Perturbation Signatures	1.0	null
ZFP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.14807
TFAP2E	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	111.997
TLE3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.06062
MLX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.9824
SEPTIN6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.90206
HCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.837317
MAFK	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.8153
Esophageal mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.229
UACC-257	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.19233
ESR1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.0272
UBALD2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.87046
NCI-H929	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.57102
oe19	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.7
TCF12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.7805
FOXE1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	67.7175
MXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.5169
S100A14	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.95286
KLF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	79.7624
GSE175787_8_v_7_rhoc_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE239844_7_v_10_crizotinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
POU5F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.553
ETV2::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	65.792
CACO-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.3892
PMC8979909-13353_2022_690_MOESM1_ESM.xlsx-ESR1_targets-genes_ESR1	Rummagene Transcription Factor Associations 2026	1.0	null
TRIM14	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.26298
ENTPD4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.85437
KLF11	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	71.4371
BATF::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.8591
TP63	ChEA Transcription Factor Targets	1.0	null
GSE184892_6_v_1_trehalose_human	RummaGEO Drug Perturbation Signatures	-1.0	null
STOM	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.08361
INSM1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.5833
KCNK1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.35208
ZNF257	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	159.534
GSE184892_7_v_2_trehalose_human	RummaGEO Drug Perturbation Signatures	1.0	null
FOXH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	59.7425
MEIS3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.8917
GSE233647_2_v_0_docetaxel_human	RummaGEO Drug Perturbation Signatures	1.0	null
Myoepithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.807
MAP7D1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.88292
PANC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.74848
GSE214931_2_v_0_temozolomide_human	RummaGEO Drug Perturbation Signatures	1.0	null
HNRNPF	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.14907
TCEAL6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.03628
CHK1_KD_GSE54267_672_human_U2OS	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
SIPA1L1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.62621
163 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.031
TFAP4::FLI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	77.7838
Colon descendens	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.561
GSE149901_2_v_1_anlotinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
Arid3a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	24.1852
Respiratory system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
ZSCAN16	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	67.1079
GATA1::TAL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.6642
GNL3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.51225
SLC38A2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.64104
CAPAN-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.837317
Portio vaginalis cervicis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.202
ZNF669	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.94
IRF8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.9935
Mafg	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	29.7572
PEX10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.75753
RXRA::VDR	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.1
chr10_47997139_C_T_b38	GTEx eQTL 2025	1.0	3.69914
FOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.1411
NCI-H187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.927129
GSE157383_3_v_1_abemaciclib_human	RummaGEO Drug Perturbation Signatures	1.0	null
SMAD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.4146
GSE202434,GSE202438_10_v_14_talazoparib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
KLHL25	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.42296
PCYT1A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.17615
SLAC complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.86
RKO-E6	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19284
GSE161864,GSE161866_4_v_3_ror2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
C32	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.60746
IRF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.2972
ZMIZ2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.75013
GSE154350_1_v_0_ascl2_human	RummaGEO Gene Perturbation Signatures	1.0	null
ZFP42	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	55.8984
MYF5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.2881
NCI-H1648	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.89984
TFAP2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	315.488
Nr2e3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	21.9565
GSE80098,GSE80366_0_v_4_progesterone_human	RummaGEO Drug Perturbation Signatures	1.0	null
BHLHE40	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.6647
UCSD-242L	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.974822
MDA-MB-415	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.12769
GSE216988,GSE216989_0_v_1_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
POU2F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.6036
AK1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.40993
OSR2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.3094
RXRB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	126.744
ZBTB6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.0242
CTCF	ENCODE Transcription Factor Targets	1.0	null
MDA-MB-330	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.03245
HTR3A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.57928
BACH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	49.5429
ZNF680	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	53.7163
MAN2C1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.49433
Nr5a2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	25.1215
LAMTOR2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.55773
MAF::NFE2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	74.0761
GSE184892_6_v_3_trehalose_human	RummaGEO Drug Perturbation Signatures	-1.0	null
lm2	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.532
OTX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.5418
VENTX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.9309
ZNF354A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	89.6418
ARFGAP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.9055
ZBTB37	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.04654
FOS::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.4831
NR4A2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.4724
RUNX2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.29435
PROX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.9821
GSE242367_1_v_0_sorafenib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
HCC1263	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.837317
ZNF416	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.7884
HS 695T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.12303
PITX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.2168
IGROV-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.139
SNU-C1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.11729
HT-115	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.27717
PATL1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.67096
JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	73.4409
SNAI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	81.8061
XPO7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.61098
RARB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	70.0271
GSE94849_6_v_4_pinometostat_human	RummaGEO Drug Perturbation Signatures	-1.0	null
RARG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.0021
MAN2A1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.1194
EPB41L5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.91821
U-2 OS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.12891
SP5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	84.3618
FOXD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	108.83
ETV5::HOXA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.6645
NSD3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.00634
NRL	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	66.7235
NR2F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	70.9987
GSE226355,GSE226357_3_v_4_ybx1_human	RummaGEO Gene Perturbation Signatures	1.0	null
B-CPAP cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.612
ZNF547	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.4256
FOXO1::FLI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.9355
FOS::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	73.159
TSPAN12	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.02196
Papillary thyroid cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.539
GSE230744,GSE237803_0_v_3_hira_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE213650_0_v_1_everolimus_human	RummaGEO Drug Perturbation Signatures	1.0	null
Psammomatous meningioma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.312
C10orf95	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.34634
ZNF320	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	283.513
HLA-DQB1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.32092
TGFB1I1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.33031
GSE239844_7_v_0_crizotinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
SELENOF	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.24268
SREBF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	56.8043
HCC38	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.837317
KLF9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	69.9812
TFE3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	47.982
FOXO1::ELK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.3103
UBE4A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.6429
MAP3K3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.22324
TFEB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.508
muscle	GTEx Tissue Gene Expression Profiles	-1.0	-1.17482
BATF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	52.2762
GATA2	JASPAR Predicted Transcription Factor Targets	1.0	null
MEF2C	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	113.937
GSE186440,GSE186443_0_v_5_daxx_human	RummaGEO Gene Perturbation Signatures	-1.0	null
FOSL1::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	70.6225
KLF13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	64.5308
ZNF528	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	60.2257
TFAP2B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	288.99
Gli1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	20.278
Stat2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	81.9346
UTF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.67743
CDX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	52.8074
ZNF318	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.63888
OCI-M1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.917767
ELK4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.5824
TAF3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.59862
EFM-192B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.927129
MTF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	61.7847
NUP58	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.79969
MDFIC	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.45583
ZNF354C	JASPAR Predicted Transcription Factor Targets	1.0	null
HBL-100	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.31463
RARA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.88083
PAFAH1B3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.36333
HIF3A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.09506
DMRTA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.1644
RELB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.8134
NCI-H1573	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.884458
PAGR1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.95734
CERS3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.17536
MEF2D	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	97.3867
RINL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.00275
COLO 857	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.89569
GSE230744,GSE237803_5_v_3_hira_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE235587_2_v_1_mitoxantrone_human	RummaGEO Drug Perturbation Signatures	1.0	null
ZNF707	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	54.4581
FOXP3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.4228
GSE218060_7_v_6_decitabine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
TBXT	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.5914
TGIF2LX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.8783
POP7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.30632
ZNF675	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	74.5709
ZNF418	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	96.381
FOXC1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	77.9351
Pancreas fat	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.769897
PPARG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	57.8214
CTCF_GM13976_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GSE202434,GSE202438_9_v_5_talazoparib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Gli2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	45.1429
GSE139455_7_v_3_stat3_human	RummaGEO Gene Perturbation Signatures	-1.0	null
NR1D1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	68.3065
PMC12381255-41389_2025_576_MOESM3_ESM.xlsx-Differentiated_SRCAP-1879-Gene_SRCAP	Rummagene Transcription Factor Associations 2026	1.0	null
BACH2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	91.9324
G121	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20184
GFPT1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.70589
CAKI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.986776
GSE135514_8_v_5_dasatinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
THAP1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	52.5848
Oc cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.852
Endocervix	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.155
GABPA	ENCODE Transcription Factor Targets	1.0	null
CDX1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.37921
ZNF417	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	59.2533
SOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.4233
MAFG::NFE2L1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	60.6326
GLI3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.5449
f1	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.932
GSE175787_5_v_2_rhoc_human	RummaGEO Gene Perturbation Signatures	1.0	null
POU5F1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.1069
FBXO2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.20345
RARA::RXRG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.9409
KLF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	101.711
ZSCAN30	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.46486
GPT	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.46736
C32TG	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07328
fallopian tube	GTEx Tissue Gene Expression Profiles	-1.0	-1.17482
SK-N-BE(2)C cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.562
ICAM5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.28791
C15orf39	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.00018
NR1D2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	70.3177
FOXE1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.39085
CDCA7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.87035
TP73	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	58.9169
KLF14	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	84.6547
GSE151090_0_v_1_verteporfin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
ELF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.3224
TEAD4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.6585