association	dataset	threshold value	standardized value
SOX18	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.7752
NCI-H28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.83748
extracellular region	GO Cellular Component Annotations 2015	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4798-01A-01R-1305-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
appendices_4a	HPA Tissue Sample Gene Expression Profiles	1.0	0.899174
A-673	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.33168
Buccal mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.002
MYF6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.9379
Dmrt1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.4794
UACC-257	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.840554
IRF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	52.4167
17616640-TableS1	GeneSigDB Published Gene Signatures	1.0	null
hippocampus (hippocampal formation)_12 pcw_F_12960	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.40153
midbrain reticular formation	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.03124
Neoplasm Metastasis	DisGeNET Gene-Phenotype Associations	1.0	null
inner CP in temporal polar cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.74186
JEKO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.987062
premotor cortex (area 6)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-2.0293
SKMEL24	CCLE Cell Line Gene Expression Profiles	1.0	1.35379
GSE239784_1_v_0_sat1_human	RummaGEO Gene Perturbation Signatures	1.0	null
mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.065089
b-lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.240216
GSE76425_0_v_12_lenalidomide_human	RummaGEO Drug Perturbation Signatures	1.0	null
Fascicle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.792
Lung adenocarcinoma_LUAD_TCGA-50-5045-01A-01R-1628-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
intracellular part	LOCATE Predicted Protein Localization Annotations	1.0	null
Periodontal ligament cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.037
proteinaceous extracellular matrix	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.285507
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.36825
primary somatosensory cortex (area S1, areas 3,1,2)_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.76077
PITX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.4331
ECC10	CCLE Cell Line Gene Expression Profiles	1.0	1.69124
POU4F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	53.7715
primary auditory cortex (core)_8 yrs_M_12841	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.14312
Organ system cancer	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.815
urogenital system	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
tonsils	GeneRIF Biological Term Annotations	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-7434-11A-01R-2132-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PK-45P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.937482
exocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.088715
Gingival disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.226
iga glomerulonephritis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.550522
leukocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054688
PRRX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.5846
regulator	GeneRIF Biological Term Annotations	1.0	null
Disease of cellular proliferation	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.815
since	GeneRIF Biological Term Annotations	1.0	null
BEN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.79679
inferolateral temporal cortex (area TEv, area 20)_30 yrs_F_12290	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.883214
TEAD2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.7786
abnormality of carbohydrate metabolism/homeostasis	GWASdb SNP-Phenotype Associations	1.0	0.159235
GSE130396_7_v_6_braf_human	RummaGEO Gene Perturbation Signatures	1.0	null
LMX1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.3082
PMC11696763-41598_2024_79298_MOESM7_ESM.csv--Table_S1_Differentially_expressed_genes_including_ZNF560_were_screened_out_between_normal_and_tumor_tissues_ZNF560	Rummagene Transcription Factor Associations 2026	1.0	null
Molaris	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.072
BATF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.8384
SUDHL6	CCLE Cell Line Gene CNV Profiles	-1.0	-2.0062
Skin Cutaneous Melanoma_SKCM_TCGA-DA-A1HV-06A-21R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Deuterosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.511
KYSE-450	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.39058
RAX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.6831
animal	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
cementum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.593247
SOX8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.2586
TT	CCLE Cell Line Gene CNV Profiles	1.0	1.38809
Skin Cutaneous Melanoma_SKCM_TCGA-D3-A3C8-06A-12R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
imply	GeneRIF Biological Term Annotations	1.0	null
NKX2-4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.5227
mediodorsal nucleus of thalamus_21 pcw_F_12365	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.939627
primary auditory cortex (core)_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.07705
primary auditory cortex (core)_37 yrs_M_12303	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.839282
abnormality of metabolism/homeostasis	GWASdb SNP-Phenotype Associations	1.0	0.04226
exocrine gland	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
PMC6080909-JEM_20171312_TableS1.xlsx-Each_THP1_Pulldown_Expt_Targets-Unnamed_5_GLI2	Rummagene Transcription Factor Associations 2026	1.0	null
extracellular region	LOCATE Curated Protein Localization Annotations	1.0	null
GSE178532_2_v_0_cisplatin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Crohn's colitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.085
PMC9630632-Table1.XLSX-diff_exp_genes-Group_1_vs_2_AND_Group_2_vs_3_NOT_Group_1_vs_3_NR4A2	Rummagene Transcription Factor Associations 2026	1.0	null
Interdigitating dendritic cell sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.382
PMC12247205-13046_2025_3465_MOESM1_ESM.xlsx-Table_S4-Table_S4_Upregulated_genes_between_patients_with_high_and_low_ASH1L-AS1_expression_ASH1L	Rummagene Transcription Factor Associations 2026	1.0	null
TEAD4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.0745
FOS_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Pheochromocytoma and Paraganglioma_PCPG_TCGA-RW-A67X-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PATU8902	CCLE Cell Line Gene CNV Profiles	-1.0	-1.51905
intracellular membrane-bounded organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
FOXA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.072
NR1I2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.7262
FOXC1	JASPAR Predicted Transcription Factor Targets	1.0	null
KLE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.852561
Liver hepatocellular carcinoma_LIHC_TCGA-CC-A1HT-01A-11R-A131-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
TDOTT	DepMap CRISPR Gene Dependency	1.0	4.97965
PMC3879300-pone.0084292.s002.xlsx-SPD_dataset-Gene_symbol_HOXD13	Rummagene Transcription Factor Associations 2026	1.0	null
HCC1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23321
NKX2-5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.3698
Invertebrate mandible	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.934
HNF4A	JASPAR Predicted Transcription Factor Targets	1.0	null
gingiva	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.78231
Hmx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	31.0279
YY1	MotifMap Predicted Transcription Factor Targets	1.0	null
NCI-H2196	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.898614
outer CP in primary auditory cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.860492
Ameloblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.942
COV413A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.986705
VZ in thalamic region	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.26961
HOXD9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.0244
tooth germ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.352969
Lung squamous cell carcinoma_LUSC_TCGA-39-5028-01A-01R-1443-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
TUHR14TKB	CCLE Cell Line Gene CNV Profiles	1.0	1.41629
Teeth hard tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.008
medial mammillary nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.938439
MS751	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.94497
inferolateral temporal cortex (area TEv, area 20)_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.08064
Lhx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	75.7
Cellular anatomical entity	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
Saliva	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.476
COLO704	CCLE Cell Line Gene Expression Profiles	1.0	1.40663
Chronic Tonsillitis	DisGeNET Gene-Disease Associations	1.0	null
FOXF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.8215
SQ1	CCLE Cell Line Gene CNV Profiles	1.0	1.45566
ileocecum	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
GSE139016_3_v_2_disulfiram_human	RummaGEO Drug Perturbation Signatures	1.0	null
Gingival fibroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.982
Keratin filament	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.769
acquired metabolic disease	GWASdb SNP-Disease Associations	1.0	0.124938
nervous system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.051496
PANC 04.03	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.972527
Serous acinar cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.125
inner SZ in midlateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.05087
SRY	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.9286
17205517-Top100PoorPrognosisGenes	GeneSigDB Published Gene Signatures	1.0	null
FOXP2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.0692
female reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051203
RPMI8226	DepMap CRISPR Gene Dependency	1.0	2.40894
FOSL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.6674
tonsil	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.944796
FOXH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.507
Endocrine gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
laterorostral part of entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.3173
IPC-298	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03319
SKN3	DepMap CRISPR Gene Dependency	1.0	2.51698
Perturb_358_KD_SIRT5_SRP311327	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-11.4194
Pheochromocytoma and Paraganglioma_PCPG_TCGA-SQ-A6I4-01A-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE130396_7_v_6_neratinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
endocrine gland	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
intracellular organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-GN-A26A-06A-11R-A18T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
periodontal ligament	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.35813
FOXA1-27270436-VCAP-HUMAN-PROSTATE-CARCINOMA	ChEA Transcription Factor Targets 2022	1.0	null
icSARS CoV_36Hour_23365422_GSE33267	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-2.18638
trunk	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
dorsolateral prefrontal cortex_15 yrs_M_12299	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.31892
Pancreatic adenocarcinoma_PAAD_TCGA-3A-A9I5-01A-11R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BACH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.7519
OLIG1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.7528
GA-10	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.39908
MOGGUVW	DepMap CRISPR Gene Dependency	1.0	2.32571
Breast disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.08
SNU387	CCLE Cell Line Gene Expression Profiles	1.0	1.90628
VSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.3081
ventral claustrum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.61203
RT-112	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.40023
2313287	DepMap CRISPR Gene Dependency	1.0	2.12243
GSE224742_0_v_1_slc1a5_human	RummaGEO Gene Perturbation Signatures	-1.0	null
laterodorsal part of putamen	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.876483
UACC62	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34538
NCI-H2722	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.94497
HOXD11	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.8382
icSARS CoV_60Hour_23365422_GSE33267	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.8082
SNUC5	DepMap CRISPR Gene Dependency	1.0	20.8745
laminin-6 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.921
FOS	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.1806
EFM19	CCLE Cell Line Gene CNV Profiles	1.0	1.40194
PMC10291819-13287_2023_3380_MOESM11_ESM.pdf-62-HOXD10_HOXD10	Rummagene Transcription Factor Associations 2026	1.0	null
primary somatosensory cortex (area S1, areas 3,1,2)_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.41241
orbital frontal cortex_16 pcw_M_12879	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.888145
HSF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	49.8632
NUGC-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.83748
PMC9974104-jci-133-159940-s019.xlsx-GT3-INCP-GATA3_co-bound_genes-Gene_Symbol_GATA3	Rummagene Transcription Factor Associations 2026	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-85-A53L-01A-21R-A26W-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
breast	GTEx Tissue Gene Expression Profiles	1.0	1.03957
periaqueductal gray substance, ventral portion	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.13577
insulin resistance	GWASdb SNP-Phenotype Associations	1.0	0.425585
deep layers of rostral entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.4049
periodontium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.18867
tonsil	HPA Tissue Gene Expression Profiles	1.0	1.27847
cellular_component	LOCATE Predicted Protein Localization Annotations	1.0	null
FOXD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	81.9592
Sarcoma_SARC_TCGA-3B-A9HJ-01A-11R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lung disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.087
FTC238	CCLE Cell Line Gene CNV Profiles	-1.0	-2.166
Prostate gland	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.037
medial ganglionic eminence_9 pcw_M_12833	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.10734
Vesicle lumen	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.763
hematopoietic system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Lung cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.143
HCC2911	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0667
Irf1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	58.3905
blood vessel	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056358
GSE226249_0_v_3_pirfenidone_human	RummaGEO Drug Perturbation Signatures	1.0	null
Dentin	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.904
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.83748
Hmx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.5055
Dental follicle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.764
FOXS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.2273
Edinger-Westphal nucleus (accessory oculomotor nucleus)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.79149
Dental plaque	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.557
phenotype	GeneRIF Biological Term Annotations	1.0	null
NCI-H2171	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.94497
HCC1419	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.856512
laminin-1 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.969
FOXP4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.9621
HCC1937	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.11284
496100379_TCx_probable Alzheimer's disease_no TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	11.4878
YAPC	CCLE Cell Line Gene Expression Profiles	-1.0	-2.12522
Prostate adenocarcinoma_PRAD_TCGA-G9-6373-01A-11R-1789-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lymphoid follicle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.144
abducens nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.16826
EFM-19	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.32669
mouth	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
Brain - Nucleus accumbens (basal ganglia)	GTEx Tissue Gene Expression Profiles 2023	1.0	7.21237
unsuspected	GeneRIF Biological Term Annotations	1.0	null
KMS-12-BM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.94497
Anchored component of membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.066
ctnnb1_19652203_myeloma_lof_human_gpl570_gds3578	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	-1.0	-0.149694
HSF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	71.9893
medial vestibular nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	3.22907
IgA glomerulonephritis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.004
connective	GeneRIF Biological Term Annotations	1.0	null
AR-27270436-VCAP-HUMAN-PROSTATE-CARCINOMA	ChEA Transcription Factor Targets 2022	1.0	null
Rectum adenocarcinoma_READ_TCGA-AH-6643-11A-01R-1830-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
DOK	DepMap CRISPR Gene Dependency	1.0	4.4434
NR3C2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.7502
Skin disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.815
Liver hepatocellular carcinoma_LIHC_TCGA-KR-A7K7-01A-11R-A33J-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SW1088	CCLE Cell Line Gene Expression Profiles	-1.0	-1.9342
dorsolateral prefrontal cortex_10 mos_M_12977	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.55233
Hmx2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	32.6368
primary auditory cortex (core)_25 pcw_F_12948	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.43058
ES2	CCLE Cell Line Gene Expression Profiles	-1.0	-1.54763
ovary	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055514
Thoracic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.092
primary somatosensory cortex (area S1, areas 3,1,2)_30 yrs_F_12290	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.883964
CL11	CCLE Cell Line Gene Expression Profiles	1.0	1.60114
NOS1	DepMap CRISPR Gene Dependency	1.0	3.05851
GSE169205_4_v_7_sirt5_human	RummaGEO Gene Perturbation Signatures	-1.0	null
layer VI of area 35c	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.830978
PMC8881251-18_2022_4183_MOESM2_ESM.xlsx-ERM_vs_P1-DEGs_ERM_versus_P1_organoids_ETV5	Rummagene Transcription Factor Associations 2026	1.0	null
Gingiva	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.805
bcor_22012066_cn_aml_lof_human_gpl570_gds4280	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	1.0	0.133209
BEN	CCLE Cell Line Gene CNV Profiles	1.0	1.45497
WM793	CCLE Cell Line Gene Expression Profiles	1.0	2.13446
PMC12697342-jem_20250471_tables3.xlsx-large_int_SM-ILF_4_FDC-Gene_FOXK2	Rummagene Transcription Factor Associations 2026	1.0	null
Lung non-small cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.107
Lung adenocarcinoma_LUAD_TCGA-55-6983-01A-11R-1949-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
gametocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.133725
outer SZ in medial temporal-occipital cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.830164
PHOX2B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.7353
nephritis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.208914
neck	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
STAT4	MotifMap Predicted Transcription Factor Targets	1.0	null
germinal	GeneRIF Biological Term Annotations	1.0	null
DMRTC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.3352
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-A45R-01A-11R-A24H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE154337_0_v_1_temozolomide_human	RummaGEO Drug Perturbation Signatures	1.0	null
16651414-Supp2	GeneSigDB Published Gene Signatures	1.0	null
COLO 320DM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.37315
DUX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.1487
posteroventral (inferior) parietal cortex_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.897718
WIDR	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.4042
POLR2A_MCF 10A_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cellular_component	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
Periodontium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.026
IZ in primary auditory cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.881802
Oral epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.639
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-FU-A3TX-01A-11R-A22U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Mesenchymal cell neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.066
deep layers of olfactory entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.3021
posterior (caudal) superior temporal cortex (area 22c)_25 pcw_F_12948	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.08807
tail of caudate	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.23102
HS944T	CCLE Cell Line Gene Expression Profiles	1.0	1.4992
ileocecum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.1577
OV7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.15754
hsa-miR-4744	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
Oropharyngeal cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.681
PMC4858740-ncomms11473-s2.xls-HAdV-D9_cr1b_Library_1-Hit_name_CENPX	Rummagene Transcription Factor Associations 2026	1.0	null
proliferation	GeneRIF Biological Term Annotations	1.0	null
amygdaloid complex_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.44322
ZNF211	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	55.898
Sarcoma_SARC_TCGA-QQ-A5VA-01A-12R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
saliva	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.914788
HSC-3	COSMIC Cell Line Gene CNV Profiles	1.0	4.51153
ventrolateral prefrontal cortex_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.956074
FOXA1_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-85-8664-01A-11R-2403-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
LHX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.9972
responses	GeneRIF Biological Term Annotations	1.0	null
periodontitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.413527
organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.041428
paravermis of cerebellum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.868449
hippocampus (hippocampal formation)_16 pcw_M_12287	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.27255
ventrolateral prefrontal cortex_21 pcw_M_12886	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.856321
GSE202434,GSE202438_10_v_14_talazoparib_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE226408_1_v_0_inpp4b_human	RummaGEO Gene Perturbation Signatures	-1.0	null
lymphnode_5b	HPA Tissue Sample Gene Expression Profiles	1.0	0.834299
COR-L279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.851534
Inner dental epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.649
HS852T	CCLE Cell Line Gene Expression Profiles	1.0	1.44923
FOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.9969
zona incerta	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.868849
Kidney renal clear cell carcinoma_KIRC_TCGA-CJ-6027-01A-11R-1672-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SUM 1315M02	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.833574
Liver hepatocellular carcinoma_LIHC_TCGA-ZP-A9D2-01A-11R-A38B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Nanog	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	16.0978
icSARA deltaORF6_36Hour_23365422_GSE33267	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.83337
lymphoid cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056685
anterior (rostral) cingulate (medial prefrontal) cortex_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.43136
embryonic structure	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059731
demonstrate	GeneRIF Biological Term Annotations	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-CC-A8HT-01A-11R-A36F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
choroid plexus of the fourth ventricle	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.979666
Cancer	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.815
ZNF136	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.0309
tooth disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.295492
reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.041699
Bladder Urothelial Carcinoma_BLCA_TCGA-DK-A3WY-01A-11R-A22U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
gland	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
CP in rostral hippocampus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.00412
COLO684	CCLE Cell Line Gene Expression Profiles	1.0	1.7067
gh1	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.738
cem/c2	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.167
GSC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.6011
blood cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054825
DUXA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	52.9464
15208663-SuppTable1b	GeneSigDB Published Gene Signatures	1.0	null
GSC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.6038
SG in caudal entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.74429
PE01	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11708
Lung adenocarcinoma_LUAD_TCGA-75-6212-01A-11R-1755-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
laminin-7 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.21
ONECUT3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	62.246
large intestine	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.5327
REC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.985942
lymph node	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.942215
mouth	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.829872
hematopoietic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056401
Breast cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.044
NR3C1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.6234
Liver hepatocellular carcinoma_LIHC_TCGA-G3-A7M6-01A-11R-A33R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ectoderm	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.121183
DAOY	CCLE Cell Line Gene CNV Profiles	-1.0	-1.65278
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.987062
SH10TC	DepMap CRISPR Gene Dependency	1.0	2.28325
16651414-Supp4	GeneSigDB Published Gene Signatures	1.0	null
HCC1143	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03319
SP in perirhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.28101
Ovarian Neoplasm	DisGeNET Gene-Disease Associations	1.0	null
NCIH510	CCLE Cell Line Gene CNV Profiles	1.0	1.80718
orbital frontal cortex_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.37085
lymphoid tissue	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Lung carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.091
Liver hepatocellular carcinoma_LIHC_TCGA-G3-AAV7-01A-11R-A38B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SCC-25	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03319
Thyroid gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
lymphnode_5a	HPA Tissue Sample Gene Expression Profiles	1.0	1.07891
BFTC-905	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.904701
Periodontal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.729
center	GeneRIF Biological Term Annotations	1.0	null
cytoplasmic part	LOCATE Predicted Protein Localization Annotations	1.0	null
Gingival epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.898
hippocampus (hippocampal formation)_16 pcw_M_12879	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.42587
HSC3	CCLE Cell Line Gene CNV Profiles	1.0	2.0581
PL45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.851534
HCC366	DepMap CRISPR Gene Dependency	1.0	5.00751
igg immunoglobulin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.510418
RPMI8402	CCLE Cell Line Gene CNV Profiles	1.0	1.88482
Primary immunodeficiency disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.019
plus	GeneRIF Biological Term Annotations	1.0	null
inner CP in midinferior temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.52767
gastrointestinal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.054282
PMC12697342-jem_20250471_tables3.xlsx-ileal_M-ILF_2_TBRC-Gene_FOXK2	Rummagene Transcription Factor Associations 2026	1.0	null
SHSY5Y	CCLE Cell Line Gene Expression Profiles	-1.0	-1.52289
PRPF4B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.29125
GSE202434,GSE202438_7_v_14_talazoparib_human	RummaGEO Drug Perturbation Signatures	1.0	null
Tonsil	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	2.547
SP in entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.36827
HOXB7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.6654
MZ in midlateral extrastriate cortex (area 19)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.33512
FOXK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.8816
disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.041562
Endocrine system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.021
Stratified epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.974
OVKATE	CCLE Cell Line Gene CNV Profiles	-1.0	-1.6066
COV413B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.945709
Head and Neck squamous cell carcinoma_HNSC_TCGA-CR-7399-01A-11R-2016-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
gastrointestinal tract	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
integument	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.366381
PMC13138062-mmc7.xlsx-DUGs_ESR1_targets-DUGs_ESR1	Rummagene Transcription Factor Associations 2026	1.0	null
Gingival recession	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.181
RUNX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.9049
anterior (rostral) cingulate (medial prefrontal) cortex_19 pcw_F_12885	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.830377
NCI-H2135	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.24197
NOTO	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.6814
PMC6756575__F3	PFOCR Pathway Figure Associations 2023	1.0	null
SLU7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.10788
KYSE450	CCLE Cell Line Gene CNV Profiles	1.0	1.4906
Whole body	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
HOXB9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.2635
layer IIIu of area 35c	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.13681
lymph node	HPA Tissue Gene Expression Profiles	1.0	0.993736
ameloblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.518072
primary	GeneRIF Biological Term Annotations	1.0	null
MDA-MB-330	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.81649
Follicular dendritic cell secreted peptide	InterPro Predicted Protein Domain Annotations	1.0	null
MDA-MB-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.852561
lines	GeneRIF Biological Term Annotations	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-HC-7821-01A-12R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SKLMS1	CCLE Cell Line Gene Expression Profiles	-1.0	-2.18759
Tonsil	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.695
anticd40	GeneRIF Biological Term Annotations	1.0	null
Disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.569
Thymus gland disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.054
SP in orbital frontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.24216
INA complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.891
tnfalphaactivated	GeneRIF Biological Term Annotations	1.0	null
JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.4355
FOXC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	65.3135
STAT3	ENCODE Transcription Factor Targets	1.0	null
UMUC3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.37189
COV504	CCLE Cell Line Gene Expression Profiles	-1.0	-1.92893
OLIG2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.6869
HCC1954	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.919326
Sox1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	36.0811
caudal subdivision of medial nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.74835
RARA_KD_GDS4065_42_human_MCF-7	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
lymphnode_4b	HPA Tissue Sample Gene Expression Profiles	1.0	0.880529
hsa-miR-3123	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
Kidney Chromophobe_KICH_TCGA-KL-8341-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC10099894-NAN-49-0-s001.xlsx-GENIC_INTERSECT_VCF-MID_TBX1	Rummagene Transcription Factor Associations 2026	1.0	null
primary motor cortex (area M1, area 4)_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.891216
BHLHE23	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.7219
Kidney renal papillary cell carcinoma_KIRP_TCGA-P4-A5EA-01A-11R-A28H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
extracellular region part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.172468
SP in midlateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	2.41693
primary somatosensory cortex (area S1, areas 3,1,2)_12 pcw_F_12835	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.2761
HUG1N	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
Acute Myeloid Leukemia_LAML_TCGA-AB-2857-03A-01T-0736-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RHOXF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.521
Stat4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	46.5649
A673	CCLE Cell Line Gene CNV Profiles	-1.0	-2.00394
gingival fibroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.419623
Iga Glomerulonephritis	DisGeNET Gene-Disease Associations	1.0	null
PITX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.6322
vascular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055261
GSE212312_2_v_3_fbxw7_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Adamantinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.302
Pou5f1::Sox2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	33.8842
NCI-H1693	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.83748
Craniopharyngioma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.223
GBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.9644
endocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.517678
DBTRG05MG	DepMap CRISPR Gene Dependency	1.0	4.45018
carbohydrate metabolism disease	GWASdb SNP-Disease Associations	1.0	0.226583
Odontoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.782
GSE196962_2_v_6_parg_human	RummaGEO Gene Perturbation Signatures	-1.0	null
immunomodulatory	GeneRIF Biological Term Annotations	1.0	null
VP229	DepMap CRISPR Gene Dependency	1.0	2.89035
HOXB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.0171
Foxl2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	31.7249
Stat2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	60.928
layer V of caudal entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.30742
small intestine	GTEx Tissue Gene Expression Profiles	1.0	0.935513
NFIL3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.768
amygdaloid complex_30 yrs_F_12290	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.870177
posterior (caudal) superior temporal cortex (area 22c)_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.55614
icSARS CoV_24Hour_None_GSE37827	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.47367
disease	GWASdb SNP-Disease Associations	1.0	0.023564
negligible	GeneRIF Biological Term Annotations	1.0	null
NCI-N87	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.92726
Histiocytic and dendritic cell cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.176
Cementum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.51
CALU3	CCLE Cell Line Gene Expression Profiles	1.0	2.66496
Rectum adenocarcinoma_READ_TCGA-AF-2689-11A-01R-A32Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BARX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.5647
PBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.0862
male reproductive system	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
Kidney Chromophobe_KICH_TCGA-KL-8333-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
posterior (caudal) superior temporal cortex (area 22c)_19 pcw_F_12885	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.844513
ileal mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.685143
endothelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.070685
Perturb_6615_OE_MATR3_SRP132715	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	12.5512
FOXA1-27270436-LNCAP-HUMAN-PROSTATE-CARCINOMA	ChEA Transcription Factor Targets 2022	1.0	null
hsa-miR-3658	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
KYM1	CCLE Cell Line Gene Expression Profiles	1.0	2.25277
FOXA1	ENCODE Transcription Factor Targets	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-FG-A70Y-01A-12R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Dlx2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	23.0442
salivarygland_6c	HPA Tissue Sample Gene Expression Profiles	1.0	1.06877
FOXN3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.2425
ZNF8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.4119
developmental	GAD High Level Gene-Disease Associations	1.0	0.293278
lateral tuberal nuclei	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.857219
abnormal glucose homeostasis	GWASdb SNP-Phenotype Associations	1.0	0.17509
GSE202434,GSE202438_2_v_14_talazoparib_human	RummaGEO Drug Perturbation Signatures	1.0	null
mediodorsal nucleus of thalamus_16 pcw_M_12287	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.39582
Parotid gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.992
FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.7573
JDP2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.2126
parotid gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.310783
extracellular region	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
18028764-Table2	GeneSigDB Published Gene Signatures	1.0	null
NCI-H2803	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05285
inferior colliculus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.883277
OVKATE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.29433
Uterine Carcinosarcoma_UCS_TCGA-N6-A4VE-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HOXC10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.6699
examined	GeneRIF Biological Term Annotations	1.0	null
amygdaloid complex_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	3.4231
tooth	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.02469
gland	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
MDA-MB-157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.68052
Squamous cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.285
HNF1A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.1731
H3K27me3_endothelial cell of umbilical vein_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
bmi1_17452456_medulloblastoma_lof_human_gpl570_gds2724	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	1.0	0.306698
kidney disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.079624
dorsolateral prefrontal cortex_26 pcw_F_12949	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.90914
NCI-H187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.57208
salivary gland	HPA Tissue Gene Expression Profiles	1.0	1.34356
Bladder Urothelial Carcinoma_BLCA_TCGA-FD-A5BS-01A-21R-A26T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Dlx5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	23.246
ventrolateral prefrontal cortex_37 yrs_M_12303	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.29892
protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.044481
PMC12697342-jem_20250471_tables3.xlsx-large_int_SM-ILF_1_TRC-Gene_FOXK2	Rummagene Transcription Factor Associations 2026	1.0	null
PMC12697342-jem_20250471_tables3.xlsx-large_int_SM-ILF_5_CXCL10-Gene_FOXK2	Rummagene Transcription Factor Associations 2026	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-56-8309-01A-11R-2296-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
germ cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.135761
lateral subdivision of BNST	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.03793
small intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.107298
Gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
molecular layer of caudal subiculum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.975385
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-7235-11A-01R-2016-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PA-TU-8902	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.83748
ZBTB32	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.4638
Thoracic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.056
Integumentary system cancer	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.815
HCC1162	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.840554
HMBOX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.5466
epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.294939
Crohn Disease	DisGeNET Gene-Disease Associations	1.0	null
HCC1500	CCLE Cell Line Gene CNV Profiles	1.0	3.21977
U-2 OS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.57208
MKN1	CCLE Cell Line Gene Expression Profiles	1.0	1.74381
KG1	CCLE Cell Line Gene Expression Profiles	-1.0	-2.67049
Cytoplasmic vesicle lumen	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.873
KM12	DepMap CRISPR Gene Dependency	1.0	2.71306
icSARA deltaORF6_30Hour_23365422_GSE33267	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.63073
PMC7239701-aba1334_Data_files_S1_to_S3.xlsx-FIG_2J-SHC-MSC_transcriptome_enrichment_genes_MSC	Rummagene Transcription Factor Associations 2026	1.0	null
laminin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.537416
POU4F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.1937
Throat	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
cardiovascular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054471
head	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.310421
OLIG3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.7479
Gastrointestinal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.099
D341MED	CCLE Cell Line Gene Expression Profiles	1.0	3.22001
Head and neck cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.059
orbital frontal cortex_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.33031
primary motor cortex (area M1, area 4)_16 pcw_M_12837	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.910481
primary motor cortex (area M1, area 4)_12 pcw_F_12835	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-2.79611
parasolitary nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.908276
PC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.70581
FOXO6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.3506
cellular_component	GO Cellular Component Annotations 2015	1.0	null
stratum radiatum of rostral CA1	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.19724
OCUG1	DepMap CRISPR Gene Dependency	1.0	7.93339
FOS_MCF 10A_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POU3F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.3389
OVCAR-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10435
FOS_MCF 10A_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NALM6	CCLE Cell Line Gene Expression Profiles	-1.0	-1.8441
arcuate nucleus of hypothalamus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.44822
effect	GeneRIF Biological Term Annotations	1.0	null
glucose metabolism disease	GWASdb SNP-Disease Associations	1.0	0.226583
A101D	CCLE Cell Line Gene Expression Profiles	1.0	1.55033
Kidney renal clear cell carcinoma_KIRC_TCGA-CW-6087-01A-11R-1672-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
posterior (caudal) superior temporal cortex (area 22c)_8 pcw_M_13058	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.38138
G43417UB	GlyGen Glycosylated Proteins	1.0	null
Lung adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.085
inner SZ in dorsolateral prefrontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.828379
Basal cell carcinoma	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.815
Disease of anatomical entity	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.815
previously	GeneRIF Biological Term Annotations	1.0	null
PK-45H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.3466
VCAP	CCLE Cell Line Gene CNV Profiles	1.0	1.98886
principal sensory nucleus of trigeminal nerve	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.15312
hpdlcs	GeneRIF Biological Term Annotations	1.0	null
LB771HNC	DepMap CRISPR Gene Dependency	1.0	4.10109
icSARS CoV_30Hour_23365422_GSE33267	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.91929
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A20H-06A-11R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-CZ-5987-01A-11R-1672-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
striatum_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.54244
NR2F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.8035
basal lamina	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.360515
SKMEL19	DepMap CRISPR Gene Dependency	1.0	3.21435
Atf3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	22.2351
NCIH146	CCLE Cell Line Gene CNV Profiles	1.0	1.63752
Hemidesmosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.393
Perturb_12654_KD_FBXO4_SRP358982	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	20.0
central nervous system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.379997
Cholesterol, LDL	dbGAP Gene-Trait Associations	1.0	0.180402
LMX1A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.434
NCI-H510A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.22582
FOSL2::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.2179
Adrenocortical carcinoma_ACC_TCGA-OR-A5JY-01A-31R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE258991_5_v_2_enzalutamide_human	RummaGEO Drug Perturbation Signatures	1.0	null
PMC10243915-uxad037_suppl_supplementary_table_s1b-table_s3b.pdf-289-E2F3_E2F3	Rummagene Transcription Factor Associations 2026	1.0	null
BECKER	DepMap CRISPR Gene Dependency	1.0	6.24991
Perturb_6614_OE_MATR3_SRP132715	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	11.0647
Spindle cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.69
Lung squamous cell carcinoma_LUSC_TCGA-77-6842-01A-11R-1949-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
viscus	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
salivary gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.143436
extracellular matrix part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.282558
organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-G3-A25V-01A-11R-A16W-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.041156
Prostate adenocarcinoma_PRAD_TCGA-J4-A6G1-01A-11R-A311-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ISL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.0388
PMC12697342-jem_20250471_tables3.xlsx-ileal_M-ILF_1_TRC-Gene_FOXK2	Rummagene Transcription Factor Associations 2026	1.0	null
FOXL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.9688
Brain Lower Grade Glioma_LGG_TCGA-E1-A7Z4-01A-11R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hsa-miR-34c-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
PK-59	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.945709
hematopoietic system	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
PET complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.7
HOXC13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	58.1935
lymph node	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
BATF::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.6218
amygdaloid complex_21 pcw_F_12365	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.83728
biological	GeneRIF Biological Term Annotations	1.0	null
SKLU1	CCLE Cell Line Gene CNV Profiles	1.0	1.46305
Adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.019
primary visual cortex (striate cortex, area V1/17)_3 yrs_F_12836	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.51759
A375	CCLE Cell Line Gene Expression Profiles	1.0	1.84967
posteroventral (inferior) parietal cortex_16 pcw_M_12287	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.67248
Nkx2-1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	22.4573
Follicular dendritic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.274
extracellular region	LOCATE Predicted Protein Localization Annotations	1.0	null
NCIH2405	CCLE Cell Line Gene CNV Profiles	-1.0	-1.54015
SPIC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.2075
evidence	GeneRIF Biological Term Annotations	1.0	null
STAT3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.1216
KMS-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32034
OPM-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1842
HCC1493	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.46812
Periodontitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.572
tonsil	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
ventrolateral prefrontal cortex_12 pcw_F_12835	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.49011
GSE224599_0_v_1_tfcp2_human	RummaGEO Gene Perturbation Signatures	1.0	null
NR4A1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.2805
TCF7L2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.7794
ZNF214	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.0752
posterior (caudal) superior temporal cortex (area 22c)_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.33563
ZNF354A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	108.23
Atoh1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	23.4424
GSE202434,GSE202438_9_v_14_talazoparib_human	RummaGEO Drug Perturbation Signatures	1.0	null
tonsil_8a1	HPA Tissue Sample Gene Expression Profiles	1.0	1.18201
Oral epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.243
19505326-SuppTable3	GeneSigDB Published Gene Signatures	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-85-8048-01A-11R-2247-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
tonsil	HPA Tissue Protein Expression Profiles	1.0	1.74129
dorsolateral prefrontal cortex_13 pcw_M_12888	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.22101
DETROIT 562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.81649
KYAE1	DepMap CRISPR Gene Dependency	1.0	6.74179
ZNF35	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.3071
periaqueductal gray substance, dorsolateral portion	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.14992
5637	CCLE Cell Line Gene Expression Profiles	-1.0	-2.29109
U251MG	CCLE Cell Line Gene CNV Profiles	1.0	2.40892
laminin-1 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.703507
tonsil	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
SCRT2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.1501
PMC12697342-jem_20250471_tables3.xlsx-ileal_M-ILF_4_FDC-Gene_FOXK2	Rummagene Transcription Factor Associations 2026	1.0	null
SCC9	DepMap CRISPR Gene Dependency	1.0	2.43091
POLR2A_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
dorsolateral prefrontal cortex_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.49351
JHH5	CCLE Cell Line Gene Expression Profiles	-1.0	-1.85816
endothelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.064114
periventricular nucleus, preoptic portion	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.58922
phenotypic abnormality	GWASdb SNP-Phenotype Associations	1.0	0.028016
PRC_DEPLETION_GDS3532_96_human_U2OS cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
NCI-H2023	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04026
Tooth	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.982
Integumentary system disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.815
Dental pulp	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.988
immunoglobulin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.483676
first	GeneRIF Biological Term Annotations	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CN-A49C-01A-11R-A24H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HHUA	DepMap CRISPR Gene Dependency	1.0	2.08364
mouth disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.260538
Rarb	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	49.7088
NCI-H1435	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.987062
female reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042824
urogenital system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05457
alitretinoin_homo sapiens_gpl6480_gse43090	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.374993
SIX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.5417
KPNSI9S	CCLE Cell Line Gene Expression Profiles	1.0	1.4352
Hmga1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	36.7783
vermiform appendix	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
PMC7481169-277_2020_4194_MOESM9_ESM.xlsx-RUNX1_R174L-RUNX1_R174L_mutant_RUNX1	Rummagene Transcription Factor Associations 2026	1.0	null
invasion	GeneRIF Biological Term Annotations	1.0	null
KU812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04026
disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.040638
PMC7445411-CPR-53-e12862-s006.xlsx-Sheet1-Supplementary_Table_S4_Gene_expression_profiling_of_NT-MSC_and_III-MSC_MSC	Rummagene Transcription Factor Associations 2026	1.0	null
STAT3_MCF 10A_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hsa-miR-4795-5p	TargetScan Predicted Conserved microRNA Targets	1.0	0.670641
PEER	CCLE Cell Line Gene CNV Profiles	1.0	1.80425
brain	HPA Tissue Gene Expression Profiles	-1.0	-0.937817
inner CP in caudal cingulate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.09615
Oral mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.294
NKX2-3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.8324
stabilizer	GeneRIF Biological Term Annotations	1.0	null
FOS::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.1666
HOXA5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.7669
salivarygland_6b	HPA Tissue Sample Gene Expression Profiles	1.0	1.18116
POU4F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.4942
cellular_component	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
E2F1	JASPAR Predicted Transcription Factor Targets	1.0	null
Cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.496
heart	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.063695
Trunk	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
follicular dendritic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	2.00812
cSARS Bat SRBD_60Hour_None_GSE37827	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.36578
Prostate adenocarcinoma_PRAD_TCGA-KK-A59V-01A-11R-A29R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SNB19	CCLE Cell Line Gene CNV Profiles	1.0	2.50399
hippocampus (hippocampal formation)_30 yrs_F_12290	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.824842
FOXP1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.4873
Skin Cutaneous Melanoma_SKCM_TCGA-D3-A5GO-06A-12R-A27Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
disease of metabolism	GWASdb SNP-Disease Associations	1.0	0.074641
CAOV3	CCLE Cell Line Gene CNV Profiles	1.0	1.39204
mediodorsal nucleus of thalamus_10 mos_M_12977	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.921637
Enamel epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.489
19936789-Table1	GeneSigDB Published Gene Signatures	1.0	null
cecum	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
Human - Fetal Development - L2 - Pancreas-CCL19_CCL21 positive cells	HuBMAP Azimuth Cell Type Annotations	1.0	null
metabolic	GAD High Level Gene-Disease Associations	1.0	0.293278
transfection	GeneRIF Biological Term Annotations	1.0	null
PK45H	CCLE Cell Line Gene CNV Profiles	-1.0	-1.78723
fallopian tube	GTEx Tissue Gene Expression Profiles	-1.0	-1.05442
Incisor	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.024
HOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.0256
inferolateral temporal cortex (area TEv, area 20)_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.894
BL41	CCLE Cell Line Gene CNV Profiles	-1.0	-1.84364
Prostate adenocarcinoma_PRAD_TCGA-VP-A87C-01A-11R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
periodontal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.341639
SCC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.4678
HOXC11	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.0646
Gastrointestinal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.413
Liver hepatocellular carcinoma_LIHC_TCGA-UB-A7MA-01A-11R-A33R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HCC1428	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.898614
ZNF558	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	81.7252
NCI-H1792	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.79166
Respiratory system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.195
Human - Fetal Development - L1 - CCL19_CCL21 positive cells	HuBMAP Azimuth Cell Type Annotations	1.0	null
GSE139016_0_v_1_disulfiram_human	RummaGEO Drug Perturbation Signatures	-1.0	null
HOXA10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.5106
primary auditory cortex (core)_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.95617
Dendritic cell sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.475
Extracellular region	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
GSE229580_2_v_3_creb1_human	RummaGEO Gene Perturbation Signatures	1.0	null
reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05621
striatum_4 mos_M_12296	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.824077
Liver hepatocellular carcinoma_LIHC_TCGA-CC-5262-01A-01R-A131-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cholesterol, ldl	GAD Gene-Disease Associations	1.0	null
GSE226355,GSE226357_1_v_4_ybx1_human	RummaGEO Gene Perturbation Signatures	1.0	null
salivary gland	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055909
NCIH28	CCLE Cell Line Gene CNV Profiles	-1.0	-1.52386
rostral ventral respiratory cell group	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.62293
CAKI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.4042
Colorectal mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.589
Castleman disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.099
H3K4me1_HepG2_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Head and neck carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.068
Mouth disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.54
Jun	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.3654
primary auditory cortex (core)_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.28726
hsa-miR-4275	TargetScan Predicted Conserved microRNA Targets	1.0	1.45615
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-FA-A4BB-01A-11R-A31O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.040693
Kidney renal clear cell carcinoma_KIRC_TCGA-A3-3319-01A-02R-1325-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
EOL1	CCLE Cell Line Gene CNV Profiles	1.0	1.4012
KMS-34	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.851534
SNU-601	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.83748
Uterine Carcinosarcoma_UCS_TCGA-N6-A4V9-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
FOXK2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.5886
outer CP in subgenual (subcallosal) cingulate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.826045
lymphatic endothelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.478923
blood vessel endothelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.068639
HOXB6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.282
IRF2	JASPAR Predicted Transcription Factor Targets	1.0	null
crohn's disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.268332
A172	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.986705
Submucosal gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.72
primary motor cortex (area M1, area 4)_37 yrs_M_12303	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.33563
Organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.538
HCC366	CCLE Cell Line Gene CNV Profiles	1.0	1.33109
HOXA6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.7308
within	GeneRIF Biological Term Annotations	1.0	null
SP in subgenual (subcallosal) cingulate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.00099
HCE4	DepMap CRISPR Gene Dependency	1.0	2.78772
FOXC1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.7368
A4FUK	CCLE Cell Line Gene Expression Profiles	1.0	1.52396
polymorphic layer of rostral subiculum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.80063
ZNF384	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	118.438
HOXD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.4162
HT-1376 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.847
inner CP in posterosuperior (dorsal) parietal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.90367
cerebellar cortex_26 pcw_F_12949	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.02017
NR4A2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.7521
Arid5a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	17.4928
cuneate nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.23579
CDX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.8576
496100365_HIP_probable Alzheimer's disease_TBI_84_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	12.3983
HDAC1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HUP-T3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.987062
11823860-SuppTable3	GeneSigDB Published Gene Signatures	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-XQ-A8TA-01A-11R-A36G-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Junctional zone	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.946
EWS502	CCLE Cell Line Gene Expression Profiles	-1.0	-2.29378
gastrointestinal tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055559
BATF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.5113
ESX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.0541
hsa-miR-3190	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
Calprotectin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.013
ZNF184	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.3156
Lung adenocarcinoma_LUAD_TCGA-44-2657-01A-01R-1107-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HOXB8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.9993
fibroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.301758
GSE205730,GSE205731_2_v_3_tazemetostat_human	RummaGEO Drug Perturbation Signatures	-1.0	null
dorsal motor nucleus of the vagus (vagal nucleus)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.97316
laminin-5 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.746
FAM86B1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.20864
U87MG	CCLE Cell Line Gene Expression Profiles	1.0	1.39573
20081105-ST-2	GeneSigDB Published Gene Signatures	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-G3-A25X-01A-11R-A16W-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
morphology	GeneRIF Biological Term Annotations	1.0	null
G111	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.57055
lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061177
primary motor cortex (area M1, area 4)_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.22292
SW 837	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.856512
NCI-H2373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.15754
HOXC12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.2489
POLR2AphosphoS5_neural cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SW 1573	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.898614
NCI-H146	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.81649
SNGM	DepMap CRISPR Gene Dependency	1.0	2.36942
ventrolateral prefrontal cortex_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.35529
GSE196962_2_v_1_parg_human	RummaGEO Gene Perturbation Signatures	-1.0	null
FOXO4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.0734
VSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.9512
SP140L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.93414
stratum pyramidale of rostral CA1	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.47057
Head and Neck squamous cell carcinoma_HNSC_TCGA-IQ-7632-01A-11R-2081-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
YAE1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.5319
POLR2A	ENCODE Transcription Factor Targets	1.0	null
HCC1187	CCLE Cell Line Gene Expression Profiles	1.0	2.40871
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-FF-8062-01A-11R-2213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
il4activated	GeneRIF Biological Term Annotations	1.0	null
HDMYZ	CCLE Cell Line Gene CNV Profiles	-1.0	-2.1665
inner CP in midcingulate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.97766
POU6F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.5533
tissue	GeneRIF Biological Term Annotations	1.0	null
HCC366	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16721
FOXD2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.1682
IZ in lateral temporal-occipital cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.08156
PMC12697342-jem_20250471_tables3.xlsx-ileal_M-ILF_6_MRC-Gene_FOXK2	Rummagene Transcription Factor Associations 2026	1.0	null
CDX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.8722
PMC7041704-JEM_20180649_TableS1.xlsx-shared_LPS_induced_genes-Unnamed_7_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
ventrolateral prefrontal cortex_16 pcw_M_12879	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.01657
LN443	CCLE Cell Line Gene Expression Profiles	-1.0	-1.54539
cellular_component	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.043291
hsa-miR-4752	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
Skin Cutaneous Melanoma_SKCM_TCGA-D3-A51H-06A-12R-A266-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Carcinoma, Ovarian Epithelial	DisGeNET Gene-Disease Associations	1.0	null
HOXB5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.3725
Sarcoma_SARC_TCGA-DX-A6BH-01A-12R-A30C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
primary auditory cortex (core)_13 yrs_F_12831	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.36935
lymphoid follicle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.83836
dorsolateral prefrontal cortex_37 yrs_M_12303	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-2.6597
laminin-10 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.596
whole body	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
Disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.815
ovary cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.228764
PTPN1_KD_GSE54157_673_human_KM-H2	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
BHLHA15	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.062
internal female genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052247
PMC10933475-41420_2024_1892_MOESM1_ESM.pdf-1-EGR4_EGR4	Rummagene Transcription Factor Associations 2026	1.0	null
HNF1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	47.4162
PMC10170086-41598_2023_34519_MOESM6_ESM.xlsx-Shee2-The_differentially_expressed_genes_between_the_BARX2_high_and_BARX2_low_group_of_LIHC_patients_BARX2	Rummagene Transcription Factor Associations 2026	1.0	null
LMSU	CCLE Cell Line Gene Expression Profiles	1.0	1.64076
bone marrow	HPA Tissue Gene Expression Profiles	-1.0	-0.937817
germ layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.07817
Hypopituitarism	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.114
restricted	GeneRIF Biological Term Annotations	1.0	null
enzalutamide_homo sapiens_gpl570_gse44905	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Pax7	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	59.7068
PMC8881251-18_2022_4183_MOESM3_ESM.xlsx-ERM_vs_P4-DEGs_ERM_versus_P4_organoids_ETV5	Rummagene Transcription Factor Associations 2026	1.0	null
caudal presubiculum (postsubiculum)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.24117
Kidney renal clear cell carcinoma_KIRC_TCGA-CJ-4923-01A-01R-1426-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05231
Arid3b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	21.5891
SG in dorsolateral prefrontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.45074
Lung squamous cell carcinoma_LUSC_TCGA-63-A5MH-01A-12R-A27Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Complement component C1 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.442
KLM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.840554
SCC25	CCLE Cell Line Gene Expression Profiles	1.0	1.58605
Thymoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.079
Respiratory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.185
gingival epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.613764
Tonsil	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
PK59	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33657
Cell type cancer	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.815
C81-61 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.681
MGA::EVX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.0188
STAT1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.0689
only	GeneRIF Biological Term Annotations	1.0	null
POLR2AphosphoS5_neural cell_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Carcinoma	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.815
17284527-TableS2	GeneSigDB Published Gene Signatures	1.0	null
LHX9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.4565
FOS	ENCODE Transcription Factor Targets	1.0	null
Ovarian cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.001
anterior (rostral) cingulate (medial prefrontal) cortex_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.47476
alveolar bone	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.835318
salivarygland_6a	HPA Tissue Sample Gene Expression Profiles	1.0	1.21684
TEAD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.7463
Periodontal ligament	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.071
SNU886	CCLE Cell Line Gene CNV Profiles	-1.0	-2.14509
cone-rod dystrophy 1	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.231
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A2GJ-06A-11R-A18U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.373493
G121	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.851534
FOSL1::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.19
Sox6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.8313
MKN-45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03319
FOXB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	54.2281
hematopoietic system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.477756
ZBTB17	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.34667
POU3F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.2574
Vomeronasal organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.79
oral	GeneRIF Biological Term Annotations	1.0	null
GSE130956_0_v_3_icaritin_human	RummaGEO Drug Perturbation Signatures	1.0	null
KYSE-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.25061
b-lymphocyte cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.247399
ovarian cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.172038
GSE118532_0_v_1_rnf168_human	RummaGEO Gene Perturbation Signatures	1.0	null
NCIH1355	DepMap CRISPR Gene Dependency	1.0	4.64586
PMC13138062-mmc7.xlsx-DUGs_E2F1_targets-DUGs_E2F1	Rummagene Transcription Factor Associations 2026	1.0	null
orbital frontal cortex_10 mos_M_12977	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.906137
Head and Neck squamous cell carcinoma_HNSC_TCGA-H7-A76A-01A-51R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
OTX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.5315
inner CP in rostral cingulate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.06248
RUNX2-22187159-PCA-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
GSE193993_0_v_3_sstr2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
endocrine gland	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
SOX21	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.4925
FOXG1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.0585
PMC6756575__F3	PFOCR Pathway Figure Associations 2024	1.0	null
NCIH1435	CCLE Cell Line Gene CNV Profiles	1.0	1.92721
Rhox11	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.531
18955564-TableS2b	GeneSigDB Published Gene Signatures	1.0	null
diabetes mellitus	GWASdb SNP-Disease Associations	1.0	0.267184
Germinal center	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.541
POU1F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.5633
rostral (anterior) extramural migratory stream	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.882925
Adamantinous craniopharyngioma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.54
intestinal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.0503
PSMG3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.2836
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
whole body	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
enamel organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.413912
GSE202434,GSE202438_12_v_14_talazoparib_human	RummaGEO Drug Perturbation Signatures	1.0	null
DU145	CCLE Cell Line Gene Expression Profiles	-1.0	-1.78799
pyramidal layer of caudal subiculum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.00855
CAL 27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.22648
lymphoid tissue	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
amygdaloid complex_37 yrs_M_12303	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.00183
Lamina epithelialis mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.719
PMC12697342-jem_20250471_tables3.xlsx-large_int_SM-ILF_2_TBRC-Gene_FOXK2	Rummagene Transcription Factor Associations 2026	1.0	null
MCF7	CCLE Cell Line Gene Expression Profiles	-1.0	-1.74809
molecule	GeneRIF Biological Term Annotations	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-A460-01A-21R-A24Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HCC1569	CCLE Cell Line Gene Expression Profiles	1.0	2.04996
CAL27	CCLE Cell Line Gene CNV Profiles	-1.0	-1.67432
skin	HPA Tissue Gene Expression Profiles	-1.0	-0.937817
NR1I3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.4754
NCI-N417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.37315
GSE76425_0_v_5_lenalidomide_human	RummaGEO Drug Perturbation Signatures	1.0	null
ovarian	GeneRIF Biological Term Annotations	1.0	null
Hematologic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.168
Tonsillitis	DisGeNET Gene-Disease Associations	1.0	null
activated	GeneRIF Biological Term Annotations	1.0	null
appendix	HPA Tissue Gene Expression Profiles	1.0	0.829066
CAPAN-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.25061
Submandibular gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.887
Lung adenocarcinoma_LUAD_TCGA-50-5055-01A-01R-1628-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Immune system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.154
cellular_component	LOCATE Curated Protein Localization Annotations	1.0	null
HOP-62	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.833574
skeletal muscle	HPA Tissue Gene Expression Profiles	-1.0	-0.937817
Hematopoietic system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
HS729	CCLE Cell Line Gene CNV Profiles	1.0	1.71445
germinal center	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.850005
17952122-GeneList	GeneSigDB Published Gene Signatures	1.0	null
alimentary canal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053691
HDAC1	ENCODE Transcription Factor Targets	1.0	null
amygdaloid complex_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.23002
FOSL1::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.8288
primary auditory cortex (core)_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.14155
MEF2C	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.411
MFE296	DepMap CRISPR Gene Dependency	1.0	3.12354
SU-DHL-6	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.36719
17229949-TableS4	GeneSigDB Published Gene Signatures	1.0	null
HESX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.7281
GSE195568_3_v_4_palbociclib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
icSARA deltaORF6_60Hour_23365422_GSE33267	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-2.20272
viscus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.0514
SW1573	CCLE Cell Line Gene CNV Profiles	-1.0	-1.46639
Hoxd13	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	22.9595
PTEN_KD_GDS2958_99_human_A431 - EPIDERMOID carcinoma cell line	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
Sox5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	17.4274
Follicular dendritic cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.506
PROP1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.3199
TCF7L1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.1358
intercalated nucleus of medulla	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.27947
collagen trimer	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.321575
Sarcoma_SARC_TCGA-DX-A3M2-01A-21R-A22K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
reuniens nucleus (medioventral nucleus) of thalamus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-2.50161
NCI-H358	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11708
Lower respiratory tract disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.082
Follicular dendritic cell sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.517
GSE152699,GSE152723_0_v_2_vemurafenib_human	RummaGEO Drug Perturbation Signatures	1.0	null
A-Netherlands-602-2009(H1N1)_7Hour_None_GSE40844	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.9532
Lung squamous cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.062
macromolecular complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.043852
HOXD10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.4163
SHOX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.2115
implicate	GeneRIF Biological Term Annotations	1.0	null
Prdm4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	28.5385
raphe obscurus nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.7442
G61	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04026
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-VS-A8EL-01A-11R-A37O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Mandibular incisor	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.951
proteinuria	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.22454
Serous cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.962
SG in granular insular cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.08187
Tumor Cell Invasion	DisGeNET Gene-Phenotype Associations	1.0	null
extracellular matrix	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.233101
Nfatc1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	25.4843
Brain Lower Grade Glioma_LGG_TCGA-DU-7007-01A-11R-2027-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Mesothelioma_MESO_TCGA-SC-A6LN-01A-11R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
activities	GeneRIF Biological Term Annotations	1.0	null
HSF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.8455
adverse	GeneRIF Biological Term Annotations	1.0	null
head	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
embryo	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.063964
gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.480091
MEF2D	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	54.2193
PC3	CCLE Cell Line Gene CNV Profiles	1.0	1.45427
Head and neck squamous cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.081
dorsorostral division of MFC (area 32)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.62484
FOXP3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.6079
SG in inferolateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.26735
tonsil_8e1	HPA Tissue Sample Gene Expression Profiles	1.0	1.12948
Disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.635
dorsal thalamus_12 pcw_F_12960	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.87121
A-Netherlands-602-2009(H1N1)_18Hour_None_GSE40844	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.81128
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
DBTRG05MG	CCLE Cell Line Gene Expression Profiles	-1.0	-1.75809
CEBPG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.5221
Gingival fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.762
prostate	HPA Tissue Gene Expression Profiles	-1.0	-0.937817
FOS_MCF 10A_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GATA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.1476
intestinal mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.133055
normal	GeneRIF Biological Term Annotations	1.0	null
salivary gland	HPA Tissue Protein Expression Profiles	1.0	1.74129
SP in midinferior temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.23365
Tooth enamel	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.692
inflammatory bowel disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.139764
STAT3_MCF 10A_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ventrolateral prefrontal cortex_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.952117
Tooth germ	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.832
NCIH1339	CCLE Cell Line Gene CNV Profiles	1.0	1.60985
Nfat5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	29.4438
SATB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.0863
PMC7064149-CAM4-9-2062-s004.xlsx-Table_S5-Table_S5_DEGs_between_low-_and_high-FOXP4-AS1_expression_groups_in_PDAC_tumor_tissues_FOXP4	Rummagene Transcription Factor Associations 2026	1.0	null
UM-UC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03319
lymphatic endothelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.393819
DETROIT562	CCLE Cell Line Gene CNV Profiles	1.0	1.91192
Malignant Neoplasm	DisGeNET Gene-Disease Associations	1.0	null
Nr2e1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	30.8291
PMC12769604-13402_2025_1147_MOESM6_ESM.xlsx-Table_S4_3_Venn-Tumor_AND_Prognosis_NOT_Scissor_NR4A2	Rummagene Transcription Factor Associations 2026	1.0	null
SNU-387	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.840554
BCPAP	CCLE Cell Line Gene Expression Profiles	1.0	1.97138
Ileal mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.793
B-cell lymphoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.873
sense organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054629
hsa-miR-125a-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
POU6F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.939
COPS4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.15546
FOXA3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.5818
SUPHD1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.88312
GSE223241_2_v_0_cdkn2a_human	RummaGEO Gene Perturbation Signatures	-1.0	null
SCARA5_Down Expression_GSE32323_611_human_Colorectal Cancer Cell lines	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
U266B1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.36719
Lung adenocarcinoma_LUAD_TCGA-44-2657-11A-01R-1758-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Skin cancer	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.815
SG in midlateral extrastriate cortex (area 19)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.03969
primary auditory cortex (core)_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.70346
Sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.285
Arid3a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	35.0
primary visual cortex (striate cortex, area V1/17)_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.88104
central nervous system lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.069
Skin carcinoma	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.815
FOXD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.95
G361	CCLE Cell Line Gene CNV Profiles	1.0	1.32964
cell part	LOCATE Predicted Protein Localization Annotations	1.0	null
Carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.361
RT11284	CCLE Cell Line Gene CNV Profiles	-1.0	-1.49859
lymphoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.063958
Reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.001
female reproductive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052179
Alveolar bone	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.892
lymph vessel	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.250627
animal	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	1.53602
H4	CCLE Cell Line Gene Expression Profiles	1.0	1.37107
dorsolateral prefrontal cortex_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.15876
medioventral part of putamen	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.978372
K029AX	CCLE Cell Line Gene CNV Profiles	-1.0	-1.52728
female reproductive system	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
Nasopharyngeal tonsil	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.138
membrane-bounded organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
SNU1272	CCLE Cell Line Gene Expression Profiles	-1.0	-1.60665
Nobox	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	14.4211
HCC2885	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.840554
thyroid gland	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
NCIH446	CCLE Cell Line Gene Expression Profiles	-1.0	-1.65005
Thymus cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.056
Lymphoid tissue	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
intermediate portion of DFC (area 9/46)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.18401
VAX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.3971
PMC12697342-jem_20250471_tables3.xlsx-ileal_M-ILF_3_SED-Gene_FOXK2	Rummagene Transcription Factor Associations 2026	1.0	null
male reproductive gland	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
U118MG	CCLE Cell Line Gene Expression Profiles	1.0	1.47556
distribution	GeneRIF Biological Term Annotations	1.0	null
provide	GeneRIF Biological Term Annotations	1.0	null
b-cell lymphoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.640428
medial preoptic nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	2.12912
organism form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058059
tonsil_8b1	HPA Tissue Sample Gene Expression Profiles	1.0	1.12464
TSHZ3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.83656
Inflammatory myofibroblastic tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.08
PPARG	JASPAR Predicted Transcription Factor Targets	1.0	null
STAT3	JASPAR Predicted Transcription Factor Targets	1.0	null
GSE175787_8_v_10_rhoc_human	RummaGEO Gene Perturbation Signatures	1.0	null
HOXD12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.4098
lymphnode_4a	HPA Tissue Sample Gene Expression Profiles	1.0	0.938623
salivary gland	GTEx Tissue Gene Expression Profiles	1.0	2.18987
female reproductive gland	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
MZ in dorsolateral prefrontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.54211
HCC2279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.7343
Cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.564
SCH	DepMap CRISPR Gene Dependency	1.0	8.71372
HCoV-EMC2012_7Hour_23631916_GSE45042	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.6677
LP-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.92726
Isolated growth hormone deficiency	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.254
Neck	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
PMC10115638-41591_2023_2255_MOESM4_ESM.xlsx-HGG_MYCN_deletions-Unnamed_4_MYCN	Rummagene Transcription Factor Associations 2026	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-BA-5152-01A-02R-1873-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-34-A5IX-01A-12R-A27Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ZSCAN21	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.8215
throat	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
SG in dorsomedial parietal cortex (area 7m)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.93917
NFE2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.2242
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-3.60898
Liver hepatocellular carcinoma_LIHC_TCGA-DD-A1EC-01A-21R-A131-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
YH13	CCLE Cell Line Gene CNV Profiles	-1.0	-1.45129
primary motor cortex (area M1, area 4)_13 pcw_M_12820	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.95005
urinary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.065498
YAMATO	DepMap CRISPR Gene Dependency	1.0	2.88755
glomerulonephritis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.26514
STAT3_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
intestine	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
PMC7041704-JEM_20180649_TableS1.xlsx-shared_LPS_induced_genes-Unnamed_6_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
SEMG1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.05634
HEP3B217	CCLE Cell Line Gene CNV Profiles	1.0	1.80161
all	GWASdb SNP-Phenotype Associations	1.0	0.027999
Lung adenocarcinoma_LUAD_TCGA-38-7271-01A-11R-2039-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ventrolateral prefrontal cortex_16 pcw_M_12837	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.15883
OCIMY5	DepMap CRISPR Gene Dependency	1.0	2.25004
POU3F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.6622
RUNX2	ChEA Transcription Factor Targets	1.0	null
GSE226408_2_v_3_inpp4b_human	RummaGEO Gene Perturbation Signatures	1.0	null
striatum_37 yrs_M_12303	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.943327
molaris	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.424963
HOXC9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.9612
Mafb	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.7232
lymphoid tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.597263
CP in caudal subicular cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.42257
Immune system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Enamel organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.883
type 2 diabetes mellitus	GWASdb SNP-Disease Associations	1.0	0.498546
SW 1463	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.851534
ZBTB26	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.362
alimentary canal	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
motility	GeneRIF Biological Term Annotations	1.0	null
BFTC-909	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.840554
ear	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.074725
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
fibroblastic	GeneRIF Biological Term Annotations	1.0	null
FU97	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11708
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.14814
reproductive system	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
Rectum adenocarcinoma_READ_TCGA-AG-3732-01A-11R-1660-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
U266B1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.15933
ileum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.192345
MDAMB436	CCLE Cell Line Gene Expression Profiles	1.0	1.79971
CMK115	CCLE Cell Line Gene Expression Profiles	-1.0	-3.3161
Human - Tonsil - L2 - NBC S100A+	HuBMAP Azimuth Cell Type Annotations	1.0	null
GSE133087_3_v_2_metformin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
precommissural nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.992348
tissues, cell types and enzyme sources	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	1.53602
Disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.603
hippocampus (hippocampal formation)_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.072
connective tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054855
PHOX2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	54.6934
Prostate adenocarcinoma_PRAD_TCGA-HC-A632-01A-11R-A29R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
POU2F1::SOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	47.0356
GSE229580_2_v_1_creb1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
SUM 149PT	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03922
TEAD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.6878
496100586_HIP_no dementia_no TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	9.13009
CALU-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.17628
ZNF410	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.8971
Vaginal fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.753
very	GeneRIF Biological Term Annotations	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-BA-6871-01A-11R-1873-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Nfatc2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	30.6906
endoplasmic reticulum	LOCATE Predicted Protein Localization Annotations	1.0	null
demonstrated	GeneRIF Biological Term Annotations	1.0	null
PITX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.2977
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-EK-A2RN-01A-12R-A213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058385
Stat6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	32.959
MEF2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	65.068
layer II of piriform cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.889425
HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.5361
PMC12697342-jem_20250471_tables3.xlsx-large_int_SM-ILF_3_SED-Gene_FOXK2	Rummagene Transcription Factor Associations 2026	1.0	null