association	dataset	threshold value	standardized value
SW 780	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.904099
NCIH1355	CCLE Cell Line Gene CNV Profiles	1.0	1.32801
HCC1599	CCLE Cell Line Gene CNV Profiles	-1.0	-1.81036
SQ1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.6005
ESR1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.7779
Anal canal	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.955
SREBF1	JASPAR Predicted Transcription Factor Targets	1.0	null
TRPS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.121
SK-MEL-31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2396
T47D	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.18954
NR2F6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.4165
NCIH727	CCLE Cell Line Gene CNV Profiles	1.0	1.42017
PMC8814143-41419_2022_4530_MOESM12_ESM.xlsx-up_ZNF32_vs_Vector-Unnamed_1_ZNF32	Rummagene Transcription Factor Associations 2026	1.0	null
GSE223893_2_v_10_setd2_human	RummaGEO Gene Perturbation Signatures	1.0	null
SW 1463	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2396
NR4A2::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.2139
HCC2279	CCLE Cell Line Gene CNV Profiles	-1.0	-1.58196
UACC-812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.936518
PMC12396377-jcb_202307079_tables1.xlsx-Fig_1C_i_-_iii_left-y_TFEB_KO_LLOMe_VS_WT_LLOMe_DOWN_TFEB	Rummagene Transcription Factor Associations 2026	1.0	null
EB1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.0242
CMK115	CCLE Cell Line Gene CNV Profiles	1.0	1.73114
MDA-MB-157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.52862
MET_knockdown_254_GSE38343	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	1.0	0.87984
hsa-miR-596	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.974414
REST_Panc1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
496100416_FWM_dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.35937
GSE134700_0_v_4_ythdf2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
HOS	CCLE Cell Line Gene CNV Profiles	1.0	2.00699
496100426_PCx_no dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.43675
DOR 13	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.855781
KE39	CCLE Cell Line Gene CNV Profiles	-1.0	-1.64453
MOLP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.973628
GSE208634_1_v_0_doxycycline_human	RummaGEO Drug Perturbation Signatures	-1.0	null
SEPTIN7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.22873
HCC2157	CCLE Cell Line Gene CNV Profiles	1.0	1.7617
GCM1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.1424
143B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.26309
HT-55	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.992528
KYSE-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08279
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.973628
LN443	CCLE Cell Line Gene CNV Profiles	-1.0	-1.35111
THRB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	56.7746
FU97	CCLE Cell Line Gene CNV Profiles	1.0	1.52749
CBX3_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H727	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.975047
GSE216988,GSE216989_0_v_1_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
LC1SQSF	CCLE Cell Line Gene CNV Profiles	-1.0	-2.09288
FADU	CCLE Cell Line Gene CNV Profiles	1.0	1.82924
NCI-H820	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.827311
EOMES	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.2932
POLR2A_HeLa-S3_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ONCODG1	CCLE Cell Line Gene CNV Profiles	1.0	2.36415
GSE95077_5_v_4_amiloride_human	RummaGEO Drug Perturbation Signatures	-1.0	null
ZR-75-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.855781
OCI-LY-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.973628
GSE206516,GSE206518_6_v_4_ptdss2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Activin AB complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.861
EFCAB14	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.27801
Skin disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.599
CMK	CCLE Cell Line Gene CNV Profiles	1.0	1.40234
Malignant Neoplasm	DisGeNET Gene-Disease Associations	1.0	null
MDAMB231	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.766334
MYCN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.6284
GSE154337_0_v_1_temozolomide_human	RummaGEO Drug Perturbation Signatures	1.0	null
HCC1428	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16711
HCC1954	CCLE Cell Line Gene CNV Profiles	1.0	1.40819
GSE169205_4_v_7_sirt5_human	RummaGEO Gene Perturbation Signatures	1.0	null
SNU-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.992528
Synovial sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.135
JHOS2	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
YAE1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.5319
OCI-M1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02354
EW8	CCLE Cell Line Gene CNV Profiles	1.0	1.48797
MGA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.9384
BRCA1	JASPAR Predicted Transcription Factor Targets	1.0	null
COV362	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16711
Integumentary system disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.599
T47D	CCLE Cell Line Gene CNV Profiles	1.0	1.57262
GSE74251_2_v_1_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
EFM-192C	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.83238
Connective tissue disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.599
TBX5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.964
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.25693
MDA-MB-415	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.63588
SK-BR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04198
MOLM-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.3157
GSE153871_5_v_2_cytarabine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
MLX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.6578
PMC8143797-elife-62857-fig3-data2.xlsx-DEgenes_SW872_TAZ-CAMTA1_vs_EV-Gene_CAMTA1	Rummagene Transcription Factor Associations 2026	1.0	null
NUP58	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.07763
Immune system disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.599
IGR1	CCLE Cell Line Gene CNV Profiles	1.0	1.69375
Neoplasm Metastasis	DisGeNET Gene-Phenotype Associations	1.0	null
Muenke Syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.286
USF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.256
GSE95077_1_v_0_amiloride_human	RummaGEO Drug Perturbation Signatures	1.0	null
Anal squamous cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.12
PMC10247733-41408_2023_863_MOESM4_ESM.pdf-591-ZNF774_ZNF774	Rummagene Transcription Factor Associations 2026	1.0	null
CORL23	CCLE Cell Line Gene CNV Profiles	-1.0	-1.32086
JHH-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.875435
NKX2-3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.7227
OAW42	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.855781
GSE208634_1_v_2_doxycycline_human	RummaGEO Drug Perturbation Signatures	-1.0	null
HCC70	CCLE Cell Line Gene CNV Profiles	-1.0	-1.42424
NCI-N417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.50274
Craniosynostosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.233
PMC5817105-thnov08p0972s2.xls-SIX3-GeneName_SIX3	Rummagene Transcription Factor Associations 2026	1.0	null
hsa-miR-298	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
ZNF416	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.8348
496100469_TCx_no dementia_TBI_89_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.71148
LUDLU1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.37667
Leiomyosarcoma Of Uterus	DisGeNET Gene-Disease Associations	1.0	null
NKX2-4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.1141
496100408_PCx_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	16.161
HCC827	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.887656
duodenum	HPA Tissue Protein Expression Profiles	1.0	1.36491
LXF-289	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.925078
MDA-MB-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.989486
THOC2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.11415
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10096
Primary immunodeficiency disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.599
Saethre-Chotzen syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.055
LOU-NH91	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1123
GCM2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.2421
TBR1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.1251
Osteoblast cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.668
NCI-H650	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.05682
Musculoskeletal system disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.599
Secondary Malignant Neoplasm Of Lymph Node	DisGeNET Gene-Disease Associations	1.0	null
POLR2A	ENCODE Transcription Factor Targets	1.0	null
CBX3	ENCODE Transcription Factor Targets	1.0	null
PMC12396377-jcb_202307079_tables1.xlsx-Fig_1C_right-TFEB_LLOMe_dependent_TFEB	Rummagene Transcription Factor Associations 2026	1.0	null
NIH:OVCAR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.32414
TBX15	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.0228
OV7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.855781
MDAMB157	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.686011
PC14	CCLE Cell Line Gene CNV Profiles	-1.0	-1.92863
Prostate Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
DNA replication preinitiation complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.642
496100472_PCx_possible Alzheimer's disease_TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.85316
HUH7	CCLE Cell Line Gene CNV Profiles	1.0	3.2803
U2OS	CCLE Cell Line Gene CNV Profiles	1.0	1.93515
NCI-H2073	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.225
THRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.8187
G121	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2396
FU97	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2396
HCC1419	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.55587
SNU5	CCLE Cell Line Gene CNV Profiles	1.0	1.59741
GSE206516,GSE206518_6_v_7_ptdss2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
SNU-182	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08279
ARTN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.01491
TBX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.7541
496100418_TCx_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.17683
SNU308	CCLE Cell Line Gene CNV Profiles	-1.0	-1.52259
SNU119	CCLE Cell Line Gene CNV Profiles	1.0	1.33879
EFO21	CCLE Cell Line Gene CNV Profiles	-1.0	-2.00399
HGC-27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.875435
HCC1359	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.904099
TFEB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.5776
G44	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.827311
KARPAS-1106P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.91961
NCIH1703	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36699
TFEC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8767
Cryptorchidism	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.224
MDAMB361	CCLE Cell Line Gene CNV Profiles	1.0	2.09596
HCC1162	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.25693
Synovium cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.135
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.841704
BHLHE40	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.7174
GSE95077_1_v_3_amiloride_human	RummaGEO Drug Perturbation Signatures	1.0	null
MDAMB134VI	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.877675
GATA4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.4604
KNS60	CCLE Cell Line Gene CNV Profiles	1.0	1.32748
PSMC3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.10003
G292CLONEA141B1	CCLE Cell Line Gene CNV Profiles	1.0	1.64384
Autoimmune disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.599
HCC1143	CCLE Cell Line Gene CNV Profiles	-1.0	-1.86416
TBX20	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.1059
HUP-T4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.23692
LOX-IMVI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.974414
TBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.4163
Autoimmune disease of musculoskeletal system	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.599
496100421_PCx_probable Alzheimer's disease_TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.93556
NCIH747	CCLE Cell Line Gene CNV Profiles	-1.0	-1.70619
GSE223893_11_v_9_setd2_human	RummaGEO Gene Perturbation Signatures	1.0	null
NCIH1651	CCLE Cell Line Gene CNV Profiles	1.0	2.20946
SIHA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.91824
PRDM1	JASPAR Predicted Transcription Factor Targets	1.0	null
GSE153871_4_v_3_cytarabine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
UM-UC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.38252
GSE234647_1_v_3_regorafenib_human	RummaGEO Drug Perturbation Signatures	1.0	null
NIHOVCAR3	CCLE Cell Line Gene CNV Profiles	1.0	2.59998
EFM-192A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.52726
GATA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.4044
Autoimmune disease of skin and connective tissue	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.599
MYBL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.1677
SW 403	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.70393
SK23	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28872
496100420_PCx_probable Alzheimer's disease_no TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.09722
DANG	CCLE Cell Line Gene CNV Profiles	-1.0	-1.46688
PE/CA-PJ15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.18553
HCC202	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.45512
HEY	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.64013
GATA6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.4213
SUM159PT	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.983744
UMUC3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.45276
ZNF35	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.7803
GATA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.3855
STAT1::STAT2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.3871
GSE223893_2_v_9_setd2_human	RummaGEO Gene Perturbation Signatures	1.0	null
HCC1954	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04198
HCC38	CCLE Cell Line Gene CNV Profiles	-1.0	-2.3514
SRF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.3943
SNAI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.1492
ZNF410	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.4524
Disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.599
496100419_TCx_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.56994
SNU-C1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08279
GSE206516,GSE206518_2_v_7_ptdss2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
HCC44	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.75805
GSE153871_5_v_3_cytarabine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.91594
RPMI7951	CCLE Cell Line Gene CNV Profiles	1.0	1.59252
LN-229	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.855781
MX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.08754
VCAP	CCLE Cell Line Gene CNV Profiles	-1.0	-1.54299
small intestine	HPA Tissue Protein Expression Profiles	1.0	1.36491
Synostosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.08
AU565	CCLE Cell Line Gene CNV Profiles	1.0	1.4098
TT	CCLE Cell Line Gene CNV Profiles	-1.0	-1.71985
REST	ENCODE Transcription Factor Targets	1.0	null
AU565	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.816971
HCC2185	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.697243
TBX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.3219
SOX15	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.12
GSE184399_0_v_2_cnot1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
COLO 800	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.46749
KP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.42464
TBX18	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.4184
Gonocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.416
JHH2	CCLE Cell Line Gene CNV Profiles	-1.0	-2.59447
COV362	CCLE Cell Line Gene CNV Profiles	1.0	1.43161
NCIH1568	CCLE Cell Line Gene CNV Profiles	-1.0	-1.48557
TBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.4318
BHLHE41	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.5226
ME-180	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.989486
CX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.976648
Stomach Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
HCC89	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2417
PKNOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.2541
TAL1::TCF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.75
SREBF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.692
TFAP4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.7186
PMC12179407-MCO2-6-e70261-s004.xlsx-down_TET3-KO_PQ_vs_Cas9_PQ-Unnamed_10_TET3	Rummagene Transcription Factor Associations 2026	1.0	null
NCI-H2030	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.51512
SUM52PE	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.07931
EBNA2-21746931-IB4-LCL-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
PANC 05.04	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.90331
DMS 273	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.936518
GSE95077_5_v_2_amiloride_human	RummaGEO Drug Perturbation Signatures	-1.0	null
SKBR3	CCLE Cell Line Gene CNV Profiles	1.0	1.48415
Disease of anatomical entity	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.599
NCI-H1373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03259
OVCA 429	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03013
MS751	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.07556
KLE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.989486
TFE3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.9743
ZSCAN16	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.9838
MCF10F	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.788722
HBL-100	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.974414
NCIH3255	CCLE Cell Line Gene CNV Profiles	1.0	1.8614
HS578T	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	2.40471
RARA::RXRG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.2109
G120	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.37162
CH157MN	CCLE Cell Line Gene CNV Profiles	-1.0	-1.40231
ESR2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.1003
NCI-H1435	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10096
CMG complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.744
NR1H4::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.2746
PK-59	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10096
an3ca	HPA Cell Line Gene Expression Profiles	1.0	0.865612
HCC2911	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.953785
G96	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.875435
NCIH650	CCLE Cell Line Gene CNV Profiles	-1.0	-2.20312
Vitiligo	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.599
HCC366	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2969
GSE223893_11_v_10_setd2_human	RummaGEO Gene Perturbation Signatures	1.0	null
MITF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.3718
PMC3960207-oncotarget-05-0264-s002.xls-rank_down_foxp3_symb-Supplementary_Table_2_Genes_significantly_differentially_expressed_between_the_SK-MEL-28-FOXP3_and_SK-MEL-28-EV_clones_FOXP3	Rummagene Transcription Factor Associations 2026	1.0	null
EBNA2-21746931-IB4-LCL-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
testis	HPA Tissue Protein Expression Profiles	1.0	1.36491
ZR75B	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.07589