association	dataset	threshold value	standardized value
SNU-C1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08279
DOR 13	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.855781
Autoimmune disease of skin and connective tissue	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.599
SKBR3	CCLE Cell Line Gene CNV Profiles	1.0	1.48415
GSE221327_8_v_2_clpp_human	RummaGEO Gene Perturbation Signatures	-1.0	null
NCIH727	CCLE Cell Line Gene CNV Profiles	1.0	1.42017
SUPM2	DepMap CRISPR Gene Dependency	1.0	2.90931
PMC8814143-41419_2022_4530_MOESM12_ESM.xlsx-up_ZNF32_vs_Vector-Unnamed_1_ZNF32	Rummagene Transcription Factor Associations 2026	1.0	null
GSE203329_0_v_1_mettl5_human	RummaGEO Gene Perturbation Signatures	1.0	null
SOX15	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.12
GSE221327_4_v_0_clpp_human	RummaGEO Gene Perturbation Signatures	-1.0	null
CH157MN	CCLE Cell Line Gene CNV Profiles	-1.0	-1.40231
NR4A2::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.2139
GSE172019_2_v_8_rnf2_human	RummaGEO Gene Perturbation Signatures	1.0	null
496100460_TCx_possible Alzheimer's disease_TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.60397
HCC1143	CCLE Cell Line Gene CNV Profiles	-1.0	-1.86416
496100419_TCx_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	6.55771
HCC70	CCLE Cell Line Gene CNV Profiles	-1.0	-1.42424
NCI-N417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.50274
ESR2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.1003
BLTP3A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.89614
G121	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2396
SNU1196	DepMap CRISPR Gene Dependency	1.0	2.26964
Vitiligo	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.092
G44	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.827311
MOLM-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.3157
PDCD11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.36035
Peritubular cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.856
testis	HPA Tissue Protein Expression Profiles	1.0	1.36491
GSE221327_5_v_0_clpp_human	RummaGEO Gene Perturbation Signatures	-1.0	null
RPMI7951	CCLE Cell Line Gene CNV Profiles	1.0	1.59252
LN443	CCLE Cell Line Gene CNV Profiles	-1.0	-1.35111
PAXIP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.18825
REST_Panc1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EOMES	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.2932
Synovium cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.126
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.974414
MPP89	DepMap CRISPR Gene Dependency	1.0	2.62736
SNU-182	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08279
NCIH1975	DepMap CRISPR Gene Dependency	1.0	2.09606
HCC2279	CCLE Cell Line Gene CNV Profiles	-1.0	-1.58196
GCIY	DepMap CRISPR Gene Dependency	1.0	2.59357
mt3	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.186
TBX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.7541
STAT5_01_279	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	-1.0	-0.61195
GSE154337_0_v_1_temozolomide_human	RummaGEO Drug Perturbation Signatures	1.0	null
Synovial sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.126
TMEM47	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.14844
GSE216988,GSE216989_0_v_1_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
HCC1428	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16711
SNU620	DepMap CRISPR Gene Dependency	1.0	3.79136
GSE221327_5_v_9_clpp_human	RummaGEO Gene Perturbation Signatures	-1.0	null
143B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.26309
GSE214931_3_v_0_temozolomide_human	RummaGEO Drug Perturbation Signatures	1.0	null
G292CLONEA141B1	DepMap CRISPR Gene Dependency	1.0	2.07491
GSE221327_8_v_9_clpp_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Immune system disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.599
OCI-LY-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.973628
Retinitis pigmentosa 11	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.133
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.841704
GSE248770_0_v_1_sorafenib_human	RummaGEO Drug Perturbation Signatures	1.0	null
ONCODG1	CCLE Cell Line Gene CNV Profiles	1.0	2.36415
MDAMB361	CCLE Cell Line Gene CNV Profiles	1.0	2.09596
EB1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.0242
GSE221327_5_v_2_clpp_human	RummaGEO Gene Perturbation Signatures	-1.0	null
NCIH1573	DepMap CRISPR Gene Dependency	1.0	2.57193
ONS76	DepMap CRISPR Gene Dependency	1.0	2.85919
COLO 800	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.46749
MX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.08754
CTNNB1-20615089-FETAL-BRAIN-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
PKNOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.2541
MON	DepMap CRISPR Gene Dependency	1.0	2.58312
THP1	DepMap CRISPR Gene Dependency	1.0	3.05709
GCM1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.1424
SK-BR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04198
NCIH747	DepMap CRISPR Gene Dependency	1.0	2.08401
SNU601	DepMap CRISPR Gene Dependency	1.0	3.28667
ESS1	DepMap CRISPR Gene Dependency	1.0	2.40028
GCM2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.2421
CPSF3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.25078
KP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.42464
MS751	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.07556
KNS60	CCLE Cell Line Gene CNV Profiles	1.0	1.32748
GSE221327_6_v_9_clpp_human	RummaGEO Gene Perturbation Signatures	-1.0	null
G120	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.37162
FU97	CCLE Cell Line Gene CNV Profiles	1.0	1.52749
NCI-H650	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.05682
SK23	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28872
TENM1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.21929
IGR1	CCLE Cell Line Gene CNV Profiles	1.0	1.69375
UMUC3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.45276
SNAI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.1492
GSE214931_1_v_5_temozolomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
AU565	CCLE Cell Line Gene CNV Profiles	1.0	1.4098
CMK115	CCLE Cell Line Gene CNV Profiles	1.0	1.73114
Autoimmune disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.599
GATA4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.4604
ENDOU	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.82452
TBX15	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.0228
U2OS	CCLE Cell Line Gene CNV Profiles	1.0	1.93515
G96	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.875435
GSE74251_0_v_1_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
GATA6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.4213
SNU308	CCLE Cell Line Gene CNV Profiles	-1.0	-1.52259
NCI-H1435	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10096
SIHA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.91824
496100416_FWM_dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.36041
496100421_PCx_probable Alzheimer's disease_TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.40625
MITF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.3718
DNMT1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.85424
OV7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.855781
Disease of anatomical entity	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.599
EFO21	CCLE Cell Line Gene CNV Profiles	-1.0	-2.00399
JHH2	CCLE Cell Line Gene CNV Profiles	-1.0	-2.59447
LXF-289	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.925078
SW48	DepMap CRISPR Gene Dependency	1.0	2.31
GSE214931_2_v_5_temozolomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
NCI-H727	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.975047
NCIH650	CCLE Cell Line Gene CNV Profiles	-1.0	-2.20312
GSE214931_4_v_0_temozolomide_human	RummaGEO Drug Perturbation Signatures	1.0	null
NKX2-3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.7227
MDA-MB-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.989486
496100426_PCx_no dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.50086
EW8	CCLE Cell Line Gene CNV Profiles	1.0	1.48797
CAL72	DepMap CRISPR Gene Dependency	1.0	2.77819
MM253	DepMap CRISPR Gene Dependency	1.0	2.63241
BRCA1	JASPAR Predicted Transcription Factor Targets	1.0	null
JHOS2	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
GP5D	DepMap CRISPR Gene Dependency	1.0	4.04282
HCC1162	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.25693
GSE153871_1_v_3_cytarabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
GATA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.3855
HCC1954	CCLE Cell Line Gene CNV Profiles	1.0	1.40819
HCC38	CCLE Cell Line Gene CNV Profiles	-1.0	-2.3514
FU97	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2396
Peritubular contractile cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.671
GSE218727_2_v_3_zkscan3_human	RummaGEO Gene Perturbation Signatures	1.0	null
ATP6V0A2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.07681
HCC2157	CCLE Cell Line Gene CNV Profiles	1.0	1.7617
MDA-MB-415	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.63588
MJ	DepMap CRISPR Gene Dependency	1.0	2.99769
TAL1::TCF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.75
HCC1954	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04198
ME-180	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.989486
LUDLU1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.37667
SREBF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.692
496100420_PCx_probable Alzheimer's disease_no TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.69967
GSE223893_2_v_9_setd2_human	RummaGEO Gene Perturbation Signatures	1.0	null
PACADD137	DepMap CRISPR Gene Dependency	1.0	2.56949
Skin disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.599
GSE221327_4_v_11_clpp_human	RummaGEO Gene Perturbation Signatures	-1.0	null
CTNNB1	ChEA Transcription Factor Targets	1.0	null
Gonocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.651
FADU	CCLE Cell Line Gene CNV Profiles	1.0	1.82924
GSE226408_1_v_0_inpp4b_human	RummaGEO Gene Perturbation Signatures	-1.0	null
PSN1	DepMap CRISPR Gene Dependency	1.0	2.00969
TBX5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.964
LC1SQSF	CCLE Cell Line Gene CNV Profiles	-1.0	-2.09288
GSE218727_0_v_3_zkscan3_human	RummaGEO Gene Perturbation Signatures	1.0	null
TBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.4163
T47D	CCLE Cell Line Gene CNV Profiles	1.0	1.57262
OCIMY7	DepMap CRISPR Gene Dependency	1.0	3.18447
SRF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.3943
496100409_FWM_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.07917
A673	DepMap CRISPR Gene Dependency	1.0	2.789
CAKI2	DepMap CRISPR Gene Dependency	1.0	2.04634
Barr body	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.179
small intestine	HPA Tissue Protein Expression Profiles	1.0	1.36491
DDX27	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.76455
NCIH520	DepMap CRISPR Gene Dependency	1.0	3.21009
HEY	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.64013
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.25693
HUP-T4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.23692
SW 1463	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2396
GSE221327_10_v_9_clpp_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE153867_6_v_4_olaparib_human	RummaGEO Drug Perturbation Signatures	1.0	null
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.91594
HCC89	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2417
YBX1_01_258	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	-1.0	-0.62418
GSE134700_0_v_4_ythdf2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
PRDM1	JASPAR Predicted Transcription Factor Targets	1.0	null
GSE221327_6_v_2_clpp_human	RummaGEO Gene Perturbation Signatures	-1.0	null
CAL33	DepMap CRISPR Gene Dependency	1.0	2.81638
ZNF416	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.8348
JHH-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.875435
HUCCT1	DepMap CRISPR Gene Dependency	1.0	2.19214
GSE74251_2_v_1_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
TFE3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.9743
CX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.976648
SNU-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.992528
ESR1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.7779
GSE221327_4_v_9_clpp_human	RummaGEO Gene Perturbation Signatures	-1.0	null
MYBL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.1677
GSE223893_11_v_9_setd2_human	RummaGEO Gene Perturbation Signatures	1.0	null
SQ1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.6005
KE39	CCLE Cell Line Gene CNV Profiles	-1.0	-1.64453
PMC3960207-oncotarget-05-0264-s002.xls-rank_down_foxp3_symb-Supplementary_Table_2_Genes_significantly_differentially_expressed_between_the_SK-MEL-28-FOXP3_and_SK-MEL-28-EV_clones_FOXP3	Rummagene Transcription Factor Associations 2026	1.0	null
SKMEL19	DepMap CRISPR Gene Dependency	1.0	2.94913
DMS 273	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.936518
K029AX	DepMap CRISPR Gene Dependency	1.0	3.19961
HCC366	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2969
SNU308	DepMap CRISPR Gene Dependency	1.0	2.54732
HCC2911	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.953785
HCC44	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.75805
NCIH1355	CCLE Cell Line Gene CNV Profiles	1.0	1.32801
GSE142588_2_v_1_cinobufagin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
TBX18	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.4184
CCIN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.85855
NKX2-4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.1141
PC14	CCLE Cell Line Gene CNV Profiles	-1.0	-1.92863
HCC827	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.887656
LOX-IMVI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.974414
hsa-miR-298	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
EOL1	DepMap CRISPR Gene Dependency	1.0	2.56403
GSE245418_0_v_2_cd109_human	RummaGEO Gene Perturbation Signatures	-1.0	null
EFM-192A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.52726
REST	ENCODE Transcription Factor Targets	1.0	null
8305C	DepMap CRISPR Gene Dependency	1.0	2.11786
NCI-H1373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03259
HUH6	DepMap CRISPR Gene Dependency	1.0	3.56127
CHLA57	DepMap CRISPR Gene Dependency	1.0	3.28598
Autoimmune disease of musculoskeletal system	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.599
ZNF410	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.4524
G292CLONEA141B1	CCLE Cell Line Gene CNV Profiles	1.0	1.64384
JHOS4	DepMap CRISPR Gene Dependency	1.0	2.04013
NCI-H2030	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.51512
GSE221327_6_v_0_clpp_human	RummaGEO Gene Perturbation Signatures	-1.0	null
LN319	DepMap CRISPR Gene Dependency	1.0	2.05732
NCIH82	DepMap CRISPR Gene Dependency	1.0	2.44939
PMC2873957-pone.0010709.s003.xls-OCT4-only_OCT4_motif_present_POU5F1	Rummagene Transcription Factor Associations 2026	1.0	null
SREBF1	JASPAR Predicted Transcription Factor Targets	1.0	null
GSE221327_6_v_11_clpp_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GAGE	InterPro Predicted Protein Domain Annotations	1.0	null
CORL23	CCLE Cell Line Gene CNV Profiles	-1.0	-1.32086
T84	DepMap CRISPR Gene Dependency	1.0	2.03512
GSE221327_10_v_11_clpp_human	RummaGEO Gene Perturbation Signatures	-1.0	null
STAT1::STAT2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.3871
ZSCAN16	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.9838
MGA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.9384
TBR1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.1251
PE/CA-PJ15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.18553
MLX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.6578
PANC 05.04	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.90331
NCIH1703	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36699
ZNF35	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.7803
SW 403	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.70393
MET_knockdown_254_GSE38343	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	1.0	1.36256
SKGT2	DepMap CRISPR Gene Dependency	1.0	3.74011
SNU5	DepMap CRISPR Gene Dependency	1.0	2.49379
HGC-27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.875435
NCI-H820	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.827311
HUH7	DepMap CRISPR Gene Dependency	1.0	3.45346
GSE221327_5_v_11_clpp_human	RummaGEO Gene Perturbation Signatures	-1.0	null
UACC-812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.936518
LK2	DepMap CRISPR Gene Dependency	1.0	2.92098
Musculoskeletal system disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.599
BHLHE41	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.5226
HCC1599	CCLE Cell Line Gene CNV Profiles	-1.0	-1.81036
THRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.8187
COV362	CCLE Cell Line Gene CNV Profiles	1.0	1.43161
GSE221327_1_v_9_clpp_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE152699,GSE152723_3_v_1_vemurafenib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Cholangiocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.703
NCI-H2073	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.225
HT29	DepMap CRISPR Gene Dependency	1.0	2.63657
THRB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	56.7746
496100458_FWM_no dementia_no TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.13487
M040416	DepMap CRISPR Gene Dependency	1.0	2.00594
CTNNB1-20615089-FETAL_BRAIN-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
SUM149PT	DepMap CRISPR Gene Dependency	1.0	2.05561
GSE95077_5_v_4_amiloride_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.599
GSE223893_2_v_10_setd2_human	RummaGEO Gene Perturbation Signatures	1.0	null
496100469_TCx_no dementia_TBI_89_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.99952
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10096
MDA-MB-157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.52862
SUIT2	DepMap CRISPR Gene Dependency	1.0	3.57244
496100367_FWM_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.68243
Primary immunodeficiency disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.599
SMZ1	DepMap CRISPR Gene Dependency	1.0	2.99061
TBX20	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.1059
PMC12518476-10067_2025_7574_MOESM8_ESM.xlsx-Sheet1-Up_regulated_DEGs_of_KD_AR	Rummagene Transcription Factor Associations 2026	1.0	null
496100472_PCx_possible Alzheimer's disease_TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.25669
an3ca	HPA Cell Line Gene Expression Profiles	1.0	0.82556
CMK	CCLE Cell Line Gene CNV Profiles	1.0	1.40234
TFEB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.5776
HCC1359	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.904099
NIH:OVCAR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.32414
PMC4257614__F4	PFOCR Pathway Figure Associations 2024	1.0	null
OVMANA	DepMap CRISPR Gene Dependency	1.0	3.65963
TRPS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.121
POLR1A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.7009
NCIH1568	CCLE Cell Line Gene CNV Profiles	-1.0	-1.48557
NCIH3255	CCLE Cell Line Gene CNV Profiles	1.0	1.8614
RARA::RXRG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.2109
OAW42	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.855781
KARPAS-1106P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.91961
SNU119	CCLE Cell Line Gene CNV Profiles	1.0	1.33879
GSE221327_10_v_0_clpp_human	RummaGEO Gene Perturbation Signatures	-1.0	null
TBX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.3219
NOL11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	5.9248
MYCN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.6284
GSE214248_0_v_1_cxcl8_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE221327_8_v_0_clpp_human	RummaGEO Gene Perturbation Signatures	-1.0	null
NCIH747	CCLE Cell Line Gene CNV Profiles	-1.0	-1.70619
NCIH1651	CCLE Cell Line Gene CNV Profiles	1.0	2.20946
CME1	DepMap CRISPR Gene Dependency	1.0	3.29696
HUH7	CCLE Cell Line Gene CNV Profiles	1.0	3.2803
Vitiligo	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.599
HT-55	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.992528
LOU-NH91	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1123
Integumentary system disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.599
HBL-100	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.974414
ZR-75-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.855781
NR1H4::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.2746
KLE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.989486
GSE223893_11_v_10_setd2_human	RummaGEO Gene Perturbation Signatures	1.0	null
TT	CCLE Cell Line Gene CNV Profiles	-1.0	-1.71985
hsa-miR-335-5p	MiRTarBase microRNA Targets	1.0	null
GATA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.4044
TBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.4318
496100466_PCx_probable Alzheimer's disease_no TBI_89_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.08771
496100418_TCx_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	7.65926
NR2F6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.4165
TFAP4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.7186
LN-229	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.855781
GSE108495_1_v_2_stat3_human	RummaGEO Gene Perturbation Signatures	1.0	null
WDR75	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.22282
EXOG	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.47601
UM-UC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.38252
KYM1	DepMap CRISPR Gene Dependency	1.0	3.2672
GSE221327_4_v_2_clpp_human	RummaGEO Gene Perturbation Signatures	-1.0	null
PMC10335698-pone.0285806.s007.xlsx-DMKN-shRNA_KD_Vs_ShSrc-Unnamed_7_AR	Rummagene Transcription Factor Associations 2026	1.0	null
duodenum	HPA Tissue Protein Expression Profiles	1.0	1.36491
TFEC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8767
GSE183113_1_v_0_sorafenib_human	RummaGEO Drug Perturbation Signatures	1.0	null
USF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.256
OVCA 429	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03013
EFM-192C	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.83238
GSE95077_5_v_2_amiloride_human	RummaGEO Drug Perturbation Signatures	-1.0	null
OCI-M1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02354
Connective tissue disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.599
MT-4 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.637
PMC4257614__F4	PFOCR Pathway Figure Associations 2023	1.0	null
POLR2A_HeLa-S3_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HOS	CCLE Cell Line Gene CNV Profiles	1.0	2.00699
OPM2	DepMap CRISPR Gene Dependency	1.0	2.3034
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.973628
PK-59	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10096
KIJK	DepMap CRISPR Gene Dependency	1.0	2.85969
SNU5	CCLE Cell Line Gene CNV Profiles	1.0	1.59741
TMEM158	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.01151
SW 780	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.904099
COV362	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16711
MOLP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.973628
BHLHE40	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.7174
PCF11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.41587
SNU1033	DepMap CRISPR Gene Dependency	1.0	2.26454
SLC25A38	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.80449
POLR2A	ENCODE Transcription Factor Targets	1.0	null
GSE226408_2_v_3_inpp4b_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE95077_1_v_3_amiloride_human	RummaGEO Drug Perturbation Signatures	1.0	null
496100391_FWM_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.1708
BPH1	DepMap CRISPR Gene Dependency	1.0	2.0224
VCAP	CCLE Cell Line Gene CNV Profiles	-1.0	-1.54299
KYSE-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08279
chrX_49289051_A_G_b38	GTEx eQTL 2025	1.0	9.06566
DANG	CCLE Cell Line Gene CNV Profiles	-1.0	-1.46688
KPL1	DepMap CRISPR Gene Dependency	1.0	2.85238
SK-MEL-31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2396
Testicular somatic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.846
hsa-miR-596	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
ESO26	DepMap CRISPR Gene Dependency	1.0	2.13585
SEPTIN11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.31886
NIHOVCAR3	CCLE Cell Line Gene CNV Profiles	1.0	2.59998
GSE95077_1_v_0_amiloride_human	RummaGEO Drug Perturbation Signatures	1.0	null
496100459_PCx_no dementia_no TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.35003