association	dataset	threshold value	standardized value
reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.873594
urinary system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.180084
ovary	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.378372
nodular goiter	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.469954
breast	GTEx Tissue Gene Expression Profiles	1.0	1.00704
organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.793361
abscission zone	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.05809
melanoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.836017
blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.441426
metazoan	GeneRIF Biological Term Annotations	1.0	null
SK23	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28872
HCC1428	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16711
RPMI7951	CCLE Cell Line Gene CNV Profiles	1.0	1.59251
skin cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.30464
colorectal adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.072091
JHOS2	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
FU97	CCLE Cell Line Gene CNV Profiles	1.0	1.52749
female reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.893072
HCC89	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2417
endocrine system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.048809
ZR-75-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.855781
EB1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.0242
USF2	JASPAR Predicted Transcription Factor Targets	1.0	null
USF1	JASPAR Predicted Transcription Factor Targets	1.0	null
testis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.37636
seminoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.604981
connective tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053348
COV362	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16711
neuroectodermal tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.18472
cystadenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.205916
EFM-192C	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.83238
PE/CA-PJ15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.18553
lung adenocarcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.264353
hematopoietic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.414293
hematopoietic cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.073826
NCIH747	CCLE Cell Line Gene CNV Profiles	-1.0	-1.70619
paclitaxel_homo sapiens_gpl570_gse11550	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
plant form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.100106
ribosomal subunit	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.223497
decitabine_homo sapiens_gpl570_gse30985	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
thyroid carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.241196
NCI-H727	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.975047
female reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.356341
MOLM-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.3157
ovary cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.104314
HCC38	CCLE Cell Line Gene CNV Profiles	-1.0	-2.3514
NCI-H650	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.05682
colonic cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061767
malaria	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.173571
spermatogonium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.399114
chondrocyte cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.60249
NCI-N417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.50274
HGC-27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.875435
EFM-192A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.52726
gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.858416
CTNNB1-20615089-FETAL_BRAIN-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
transcriptional	GeneRIF Biological Term Annotations	1.0	null
plant embryo	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.221291
Malignant Neoplasm	DisGeNET Gene-Disease Associations	1.0	null
head	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05307
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.876552
seedling	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.116092
SNU-182	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08279
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.838476
CTNNB1-20615089-FETAL-BRAIN-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
alimentary canal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.064151
virion part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.217511
neuroblastoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.318272
SQ1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.60052
plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.072811
FU97	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2396
PC14	CCLE Cell Line Gene CNV Profiles	-1.0	-1.92864
SKBR3	CCLE Cell Line Gene CNV Profiles	1.0	1.4842
skin	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.063208
HCC1143	CCLE Cell Line Gene CNV Profiles	-1.0	-1.86417
small intestine	HPA Tissue Protein Expression Profiles	1.0	1.36491
brain	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051073
cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.843392
143B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.26309
adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.240826
Enterovirus 71_8Hour_None_GSE15323	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-2.05476
epithalamus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.138388
JHH2	CCLE Cell Line Gene CNV Profiles	-1.0	-2.59447
brain cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.054111
PMC4909989-ncomms11840-s3.xlsx-Sheet1-The_overlapped_genes_regulated_by_YAP_YAP_TEAD4-FL_YAP_TEAD4-S_and_YAP_RBM4_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
endocrine gland cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.278654
PMC5817105-thnov08p0972s2.xls-SIX3-GeneName_SIX3	Rummagene Transcription Factor Associations 2026	1.0	null
lung	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060623
rectum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.102661
integument	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.220152
LOX-IMVI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.974414
MS751	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.07556
blood cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.063593
cytoplasmic part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.040665
LC1SQSF	CCLE Cell Line Gene CNV Profiles	-1.0	-2.09288
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.841704
leukemia cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.073283
NCIH1355	CCLE Cell Line Gene CNV Profiles	1.0	1.32801
trunk	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.295297
hsa-miR-298	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
HCC827	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.887656
nervous system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.056906
bone marrow cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.081687
bone marrow cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.06683
an3ca	HPA Cell Line Gene Expression Profiles	1.0	1.17896
colon	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.076122
skeletal system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056371
organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.186087
epidermis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060931
cytotoxic t-lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.678617
Peripheral Nervous System Diseases	CTD Gene-Disease Associations	1.0	2.88009
male reproductive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.20245
cellless	GeneRIF Biological Term Annotations	1.0	null
G44	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.827311
HCC2157	CCLE Cell Line Gene CNV Profiles	1.0	1.76174
gametocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.098157
pinealocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.23011
REST_Panc1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PANC 05.04	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.90331
renal cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.160948
HT-55	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.992528
UACC-812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.936518
COV362	CCLE Cell Line Gene CNV Profiles	1.0	1.43164
hepatoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.452198
KYSE-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08279
medulloblastoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.364085
erythroleukemia cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.150559
diencephalon	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061001
cell	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.276304
lymphoid cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.464174
substance-related disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.062869
CMK	CCLE Cell Line Gene CNV Profiles	1.0	1.40229
colonic cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.085325
testis	HPA Tissue Protein Expression Profiles	1.0	1.36491
Setleis syndrome_Skin fibroblast_GSE16524	GEO Signatures of Differentially Expressed Genes for Diseases	-1.0	-0.927246
reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.434899
prostate gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060664
skov-3 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.474646
HCC44	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.75805
liver cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.066543
JHH-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.875435
organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041352
disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.039266
leukocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.390421
cartilage	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.065833
VCAP	CCLE Cell Line Gene CNV Profiles	-1.0	-1.54302
mifepristone_homo sapiens_gpl6947_gse39654	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
OVCA 429	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03013
NIHOVCAR3	CCLE Cell Line Gene CNV Profiles	1.0	2.59998
ovary cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.217346
NCI-H1435	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10096
PMC8814143-41419_2022_4530_MOESM12_ESM.xlsx-up_ZNF32_vs_Vector-Unnamed_1_ZNF32	Rummagene Transcription Factor Associations 2026	1.0	null
HEY	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.64013
benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.040567
neck	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05913
LN-229	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.855781
lymphatic system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.192031
lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.466111
hsa-miR-596	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
erythroleukemia cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.157883
whole plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.072903
carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.383337
Secondary Malignant Neoplasm Of Lymph Node	DisGeNET Gene-Disease Associations	1.0	null
infratentorial cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.076534
NIH:OVCAR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.32414
intracellular part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041129
SW 1463	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2396
SK-MEL-31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2396
dld-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.251279
thyroid gland disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.069292
intracellular organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041474
oropharynx	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.366381
kidney	GTEx Tissue Gene Expression Profiles	-1.0	-0.898226
SNU-C1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08279
epithelial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.24486
EBNA2-21746931-IB4-LCL-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
plasmodium falciparum malaria	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.226952
female reproductive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.976315
TT	CCLE Cell Line Gene CNV Profiles	-1.0	-1.71989
CBX3	ENCODE Transcription Factor Targets	1.0	null
CX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.976648
SIHA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.91824
ovary cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.354084
adenocarcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.297089
prostate cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.068203
malignant mesothelioma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.200982
colonic cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060702
NCIH650	CCLE Cell Line Gene CNV Profiles	-1.0	-2.20312
liver carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.550522
germ	GeneRIF Biological Term Annotations	1.0	null
neuroblastoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.068306
thyroid cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.359657
SW 403	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.70393
IGR1	CCLE Cell Line Gene CNV Profiles	1.0	1.69372
cellular_component	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.399751
DOR 13	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.855781
basophilic leukemia cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.518465
throat	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061684
basophilic leukemia cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.212761
colorectal cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.067148
melanoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.307528
ovarian cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.354868
epidermal cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057302
liver	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.319498
U2OS	CCLE Cell Line Gene CNV Profiles	1.0	1.93515
SW 780	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.904099
NCIH1568	CCLE Cell Line Gene CNV Profiles	-1.0	-1.48561
NCIH727	CCLE Cell Line Gene CNV Profiles	1.0	1.42017
lung cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.07085
hepatocellular carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.552851
plant reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.107758
DANG	CCLE Cell Line Gene CNV Profiles	-1.0	-1.46689
OV7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.855781
goiter	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.129129
salivary gland	GTEx Tissue Gene Expression Profiles	-1.0	-0.898226
16356477-Table1	GeneSigDB Published Gene Signatures	1.0	null
t-lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.430695
rbl-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.628697
NCI-H2030	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.51512
PMC6604319-13072_2019_278_MOESM3_ESM.xlsx-CEM_ect_TET2_DEGs_DMRs_hDMRs-Unnamed_1_TET2	Rummagene Transcription Factor Associations 2026	1.0	null
PMC10335698-pone.0285806.s007.xlsx-DMKN-shRNA_KD_Vs_ShSrc-Unnamed_5_AR	Rummagene Transcription Factor Associations 2026	1.0	null
17709385-Table1	GeneSigDB Published Gene Signatures	1.0	null
G121	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2396
MDA-MB-415	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.63588
LUDLU1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.37669
hematopoietic system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.477367
colonic adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.078048
abdomen	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.070467
REST	ENCODE Transcription Factor Targets	1.0	null
leaf disc	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.630718
MAX	JASPAR Predicted Transcription Factor Targets	1.0	null
rectal cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.234016
carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.214388
endocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.885015
PMC9013128-NIHMS1795992-supplement-4.xlsx-501mel_ARID2_KO_Downregulated-Gene__name_ARID2	Rummagene Transcription Factor Associations 2026	1.0	null
hepatoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.066855
t47d	HPA Cell Line Gene Expression Profiles	1.0	0.921954
epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.074829
ONCODG1	CCLE Cell Line Gene CNV Profiles	1.0	2.36415
NCI-H2073	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.225
HCC70	CCLE Cell Line Gene CNV Profiles	-1.0	-1.42422
HCC2911	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.953785
non-small cell lung cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062967
pou5f1_20526341_human_embryonic_stem_cells_hesc_lof_human_gpl6947_gse21135	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	-1.0	-0.474662
adult	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.229839
CBX3_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.25693
Neoplasm Metastasis	DisGeNET Gene-Phenotype Associations	1.0	null
virion	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.215063
thyroid gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.065336
germ cell cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.403811
spermatocytoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.16906
central nervous system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.045329
MX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.08754
FADU	CCLE Cell Line Gene CNV Profiles	1.0	1.82922
EBNA2-21746931-IB4-LCL-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
pineal gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.191302
nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051791
small cell lung cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.226411
LOU-NH91	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1123
uterus	GTEx Tissue Gene Expression Profiles	-1.0	-0.898226
malignant glioma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.10531
MOLP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.973628
macromolecular complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041027
NCIH3255	CCLE Cell Line Gene CNV Profiles	1.0	1.86146
reticulosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.257711
small intestine	GTEx Tissue Gene Expression Profiles	1.0	1.59531
gastrointestinal cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.07937
inflorescence	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.081073
PRDM1	JASPAR Predicted Transcription Factor Targets	1.0	null
pharynx	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.109263
papillary thyroid carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.169812
renal carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.070289
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10096
seed	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.214202
OAW42	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.855781
HCC366	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2969
fruit	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.119961
SNU-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.992528
HCC1954	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04198
parasitic infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.049474
ascites	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.298165
liver cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062383
UM-UC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.38252
liver cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.528835
benign mesothelioma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.242245
G120	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.37162
large intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.077391
mouth	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062828
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.903275
bladder	GTEx Tissue Gene Expression Profiles	-1.0	-0.898226
epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.064425
G96	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.875435
gastrointestinal tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061677
respiratory system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059652
leukemia cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.078688
cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.00161
HBL-100	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.974414
gcl	GeneRIF Biological Term Annotations	1.0	null
Leiomyosarcoma Of Uterus	DisGeNET Gene-Disease Associations	1.0	null
immune system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.047726
urogenital system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.788131
disease of mental health	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.041502
rectal cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.065021
regulator	GeneRIF Biological Term Annotations	1.0	null
male reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.14875
leaf	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.226411
SNU5	CCLE Cell Line Gene CNV Profiles	1.0	1.59741
AU565	CCLE Cell Line Gene CNV Profiles	1.0	1.40977
T47D	CCLE Cell Line Gene CNV Profiles	1.0	1.57257
OCI-LY-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.973628
germ cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.2559
internal male genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.19089
sk-n-sh cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.253908
POLR2A_HeLa-S3_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SK-BR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04198
protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.040638
melanocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059948
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.875706
lncap cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.232317
HOS	CCLE Cell Line Gene CNV Profiles	1.0	2.00699
origin recognition complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.416511
KP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.42464
LXF-289	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.925078
thyroid nodule	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.277549
hypopharynx	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.521617
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.973628
OCI-M1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02354
POLR2A	ENCODE Transcription Factor Targets	1.0	null
duodenum	HPA Tissue Protein Expression Profiles	1.0	1.36491
adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.115226
disease by infectious agent	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.041633
bone marrow	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.066208
HCC1359	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.904099
fallopian tube	GTEx Tissue Gene Expression Profiles	-1.0	-0.898226
intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.06755
Stomach Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
serous cystadenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.238054
lymphoid tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.522011
mel cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.43989
peripheral nervous system neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.277584
k562	HPA Cell Line Gene Expression Profiles	1.0	1.16914
MDA-MB-157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.52862
scale	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.214954
NCI-H820	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.827311
shoot	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.085044
neuroblastoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.070095
SREBF1	JASPAR Predicted Transcription Factor Targets	1.0	null
znf217_22593193_mda_mb_231_gof_human_gpl570_gse35511	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	-1.0	-0.678457
colorectal cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.066677
UMUC3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.45274
HCC1954	CCLE Cell Line Gene CNV Profiles	1.0	1.40815
NCIH1651	CCLE Cell Line Gene CNV Profiles	1.0	2.20946
NCI-H1373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03259
germinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.542767
KLE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.989486
paclitaxel_homo sapiens_gpl570_gse11552	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
chondrocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.185609
prostate gland cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.06258
KE39	CCLE Cell Line Gene CNV Profiles	-1.0	-1.64448
partner	GeneRIF Biological Term Annotations	1.0	null
Prostate Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
organism form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.312957
CTNNB1	ChEA Transcription Factor Targets	1.0	null
ribonucleoprotein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.045715
cell type benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.045264
chromosomal part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.046308
intestinal cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059047
NCIH1703	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36699
astrocytoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.123437
HUP-T4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.23692
HUH7	CCLE Cell Line Gene CNV Profiles	1.0	3.2803
kidney cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.051885
plumule	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.224893
PK-59	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10096
HCC1162	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.25693
colorectal adenocarcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.241132
ME-180	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.989486
flower	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.086169
cell part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.276304
ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056242
intracellular organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.157039
KARPAS-1106P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.91961
epithelioma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.447192
KNS60	CCLE Cell Line Gene CNV Profiles	1.0	1.32749
LN443	CCLE Cell Line Gene CNV Profiles	-1.0	-1.35108
central nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051039
hypocotyl	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.222699
internal female genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.383637
MELAS - Mitochondrial myopathy, encephalopathy, lactic acidosis and stroke-like episodes_Muscle - Striated (Skeletal) (MMHCC)_GSE1462	GEO Signatures of Differentially Expressed Genes for Diseases	-1.0	-1.26183
PMC12179407-MCO2-6-e70261-s004.xlsx-down_TET3-KO_PQ_vs_Cas9_PQ-Unnamed_10_TET3	Rummagene Transcription Factor Associations 2026	1.0	null
viscus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.347778
DMS 273	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.936518
CMK115	CCLE Cell Line Gene CNV Profiles	1.0	1.73114
colorectal cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.067645
bronchogenic carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.292079
SNU308	CCLE Cell Line Gene CNV Profiles	-1.0	-1.52257
forebrain	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052648
CORL23	CCLE Cell Line Gene CNV Profiles	-1.0	-1.32089
COLO 800	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.46749
disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.995705
Sickle Cell Anemia_Endothelial cell_GSE9877	GEO Signatures of Differentially Expressed Genes for Diseases	-1.0	-0.234651
viral capsid	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.354042
autonomic nervous system neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.315729
CH157MN	CCLE Cell Line Gene CNV Profiles	-1.0	-1.40232
MDAMB361	CCLE Cell Line Gene CNV Profiles	1.0	2.09596
colorectum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.078326
intracellular	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.275569
squamous cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.294413
rectal cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.065404
MDA-MB-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.989486
glioblastoma multiforme	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.19273
SNU119	CCLE Cell Line Gene CNV Profiles	1.0	1.33883
digestive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.28213
substance dependence	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.084891
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.91594
EFO21	CCLE Cell Line Gene CNV Profiles	-1.0	-2.00399
Psoriasis vulgaris_Skin tissue_GSE14905	GEO Signatures of Differentially Expressed Genes for Diseases	1.0	1.4581
HCC1599	CCLE Cell Line Gene CNV Profiles	-1.0	-1.81034
parasitic protozoa infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.07352
carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.447961
gonad	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.34451
colonic adenocarcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.262645
G292CLONEA141B1	CCLE Cell Line Gene CNV Profiles	1.0	1.6439
HCC2279	CCLE Cell Line Gene CNV Profiles	-1.0	-1.58193
alcohol dependence	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.180084
gastrointestinal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.512264
PMC12616242-can-24-3452_supplementary_table_s2_suppst2.xlsx-Down_bins-Down_bins_loosing_H3K27me3_in_hpMSC-EWSR1_FLI1_FLI1	Rummagene Transcription Factor Associations 2026	1.0	null
EW8	CCLE Cell Line Gene CNV Profiles	1.0	1.48802
ovary adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.408972
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.974414