association	dataset	threshold value	standardized value
MDA-MB-231	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.832613
Stat5a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	45.8483
ZNF410	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.0042
TRAF4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.50551
HOXD11	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.1335
GSE165122_2_v_3_metformin_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
CTCF	ENCODE Transcription Factor Targets	1.0	null
Perturb_4500_KO_zc3h12a_DRP003625	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-20.0
ALX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.1698
GSE216538_7_v_2_mrs2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Hmga1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	30.3775
GSE229973_4_v_7_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE217405_0_v_1_osimertinib_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
H3K4me3_small intestine_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
Perturb_11252_KO_Med13_SRP302233	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	6.39494
HSF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.393
GSE119701_0_v_1_phf7_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
P-loop containing nucleoside triphosphate hydrolase	InterPro Predicted Protein Domain Annotations	1.0	null
OPM-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.38963
Cervix - Ectocervix	GTEx Tissue Gene Expression Profiles 2023	1.0	6.99516
GSE84922,GSE84924_4_v_1_sall4_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
CREB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.485
SW 1463	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.915852
LS123	CCLE Cell Line Gene CNV Profiles	-1.0	-2.26886
GSE161027,GSE161028_1_v_3_foxo1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
H3K4me1_liver_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
POU4F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	90.2285
HNF1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	56.8312
MEIS2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.4795
HCC2270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.92675
Sox17	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	25.3735
NCIH1355	CCLE Cell Line Gene CNV Profiles	1.0	1.49463
DLX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.6391
NKX2-4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.2295
SUDHL6	CCLE Cell Line Gene CNV Profiles	-1.0	-1.89824
FOXH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.85
MDAMB436	CCLE Cell Line Gene CNV Profiles	1.0	1.51229
MBD3L1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.80658
GSE255432_4_v_3_imeglimin_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
SNU-387	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.902932
PMC7445411-CPR-53-e12862-s006.xlsx-Sheet1-Supplementary_Table_S4_Gene_expression_profiling_of_NT-MSC_and_III-MSC_MSC	Rummagene Transcription Factor Associations 2026	1.0	null
PHOX2B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	59.6599
POU4F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	95.0132
PBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.3481
HH	CCLE Cell Line Gene CNV Profiles	1.0	3.2803
537 MEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.21846
LBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.894
GSE246053_1_v_2_hnf4a_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE120612_6_v_2_etoposide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
ZNF226	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.35431
GSE158815_5_v_3_trib1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
CAL27	CCLE Cell Line Gene CNV Profiles	-1.0	-1.624
H3K27ac_small intestine_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me1_liver_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
FOS::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.488
GSE120370_0_v_6_thrombin_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
GSE191015_0_v_2_gsdmb_human	RummaGEO Gene Perturbation Signatures	1.0	null
PK59	CCLE Cell Line Gene CNV Profiles	-1.0	-1.39106
GSE210101,GSE210114_4_v_3_urod_human	RummaGEO Gene Perturbation Signatures	1.0	null
PMC12186250-NIHMS2085662-supplement-3.xlsx-4111_TEAD4_peaks-Gene_Name_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
SATB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.2889
Tcf21	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	21.7078
PANC 05.04	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.862327
PMC6151027-12864_2018_5080_MOESM3_ESM.xlsx-E20-D3_1775_AR-DEGs-Symbol_AR	Rummagene Transcription Factor Associations 2026	1.0	null
ZNF8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.7513
SKNO1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.68464
RT-112	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.52888
SW620	CCLE Cell Line Gene CNV Profiles	-1.0	-1.51971
ZBTB32	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.1517
nucleotide binding	GO Molecular Function Annotations 2015	1.0	null
GSE149075_3_v_5_foxa2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE210101,GSE210114_5_v_3_urod_human	RummaGEO Gene Perturbation Signatures	1.0	null
HOXB7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.2568
GSE206093,GSE206094_1_v_3_isl1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
BARX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.7885
PAX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.5819
HOXB6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.2033
496100458_FWM_no dementia_no TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	9.13251
TCF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.1959
G111	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.72686
WIDR	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.57616
CA SKI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.860029
GSE154197_1_v_0_ints13_human	RummaGEO Gene Perturbation Signatures	1.0	null
PEER	CCLE Cell Line Gene CNV Profiles	1.0	2.00242
SW 620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.73698
GSE181517_0_v_1_doxorubicin_human	RummaGEO Drug Perturbation Signatures	1.0	null
CDX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.7895
Ar	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	35.8311
GSE133691_1_v_3_lgr5_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
ZC3H11A_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CEBPA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.9751
guanyl nucleotide binding	GO Molecular Function Annotations 2015	1.0	null
GSE138019_1_v_5_nudt12_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PEX2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.56951
ZSCAN16	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.8536
MNX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.738
GSE157233_2_v_4_a1cf_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
KMS-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.50114
HOXA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.1244
GSE125007,GSE125008_1_v_0_uhrf1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
VSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.4497
DMRTA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.4033
CAPAN2	CCLE Cell Line Gene CNV Profiles	1.0	1.36963
GSE138019_1_v_2_nudt12_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GSE152937_12_v_1_slc16a13_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PMC8104016-hcg-12-e002353-s006.xlsx-mTHP-1-LPS_Prom-Distal-RefSeq_Name_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
COV644	CCLE Cell Line Gene CNV Profiles	-1.0	-2.07787
TOLEDO	CCLE Cell Line Gene CNV Profiles	1.0	1.39677
ZNF677	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.8646
GSE217405_3_v_2_egfr_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE181517_2_v_1_doxorubicin_human	RummaGEO Drug Perturbation Signatures	1.0	null
CTCF_cortical plate_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GSE165122_0_v_1_metformin_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE196110_1_v_2_ndrg3_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PMC6151027-12864_2018_5080_MOESM3_ESM.xlsx-E16_vs_D1_1084_AR-DEGs-Symbol_AR	Rummagene Transcription Factor Associations 2026	1.0	null
ion binding	GO Molecular Function Annotations 2015	1.0	null
lb4	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.789
EHF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.4574
PK45H	CCLE Cell Line Gene CNV Profiles	-1.0	-1.75779
WDFY2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.65677
REC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07305
t67-small-intestine_consensus	MoTrPAC Rat Endurance Exercise Training	1.0	1.33019
GSE103372_1_v_2_smad1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE210101,GSE210114_1_v_3_urod_human	RummaGEO Gene Perturbation Signatures	1.0	null
SKBR3	CCLE Cell Line Gene CNV Profiles	1.0	1.81372
PE01	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.915852
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
GSE140200_1_v_0_trim59_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE237040_4_v_1_notch3_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
CAL78	CCLE Cell Line Gene CNV Profiles	1.0	1.45021
GSE158715_3_v_0_cyp1b1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE138019_3_v_6_nudt12_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
purine nucleotide binding	GO Molecular Function Annotations 2015	1.0	null
Dmrt1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	30.7854
PANC0403	CCLE Cell Line Gene CNV Profiles	1.0	1.41271
HOXB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.3392
MOLM-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.859163
RAD21	ENCODE Transcription Factor Targets	1.0	null
nucleoside phosphate binding	GO Molecular Function Annotations 2015	1.0	null
binding	GO Molecular Function Annotations 2015	1.0	null
MSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.2307
KMS11	CCLE Cell Line Gene CNV Profiles	1.0	1.38168
GSE162276_2_v_0_rosiglitazone_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
NCI-H716	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.925251
GSE148692,GSE148695_5_v_3_satb2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
SQ1	CCLE Cell Line Gene CNV Profiles	1.0	1.67025
GSE200352_1_v_8_pparg_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
SW1573	CCLE Cell Line Gene CNV Profiles	-1.0	-1.41018
NOL11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	5.9248
H3K9ac_liver_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
DLX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.0274
Stat5a::Stat5b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	39.0422
COCH	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.98995
TBX21	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.2782
NKX6-3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.0223
COV413A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07393
organic cyclic compound binding	GO Molecular Function Annotations 2015	1.0	null
GSE148692,GSE148695_7_v_0_satb2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GSE255432_6_v_0_imeglimin_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
FOS::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.7253
DUXA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	66.7798
GSE210842_3_v_1_hnf4a_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
ZC3HAV1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.98708
G130	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.832613
NCI-H2803	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.971116
NCIH28	CCLE Cell Line Gene CNV Profiles	-1.0	-1.53705
PAX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	63.0315
AR-27623747-22RV1-MOUSE-PROSTATE-CARCINOMA	ChEA Transcription Factor Targets 2022	1.0	null
GSE171269_1_v_4_pioglitazone_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
purine ribonucleoside triphosphate binding	GO Molecular Function Annotations 2015	1.0	null
KMH2	CCLE Cell Line Gene CNV Profiles	1.0	1.74055
Pectoral muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.0
PRPF4B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.29125
COR-L279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.915852
GSE200352_5_v_0_pparg_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GSE133329_0_v_3_trim28_human	RummaGEO Gene Perturbation Signatures	1.0	null
HOXB8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.2639
PU.1	MotifMap Predicted Transcription Factor Targets	1.0	null
LHX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.7921
Hmx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.8551
NOP9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.03072
ESRRB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.1227
PMC10201771-12864_2023_9385_MOESM1_ESM.xlsx-ST18-Unnamed_11_ST18	Rummagene Transcription Factor Associations 2026	1.0	null
GSE212486,GSE212488_2_v_3_gata4_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
H2BK1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.02322
GSE158197_6_v_4_egfr_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE211286_7_v_6_tcf12_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE152699,GSE152723_3_v_1_vemurafenib_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE210101,GSE210114_7_v_3_urod_human	RummaGEO Gene Perturbation Signatures	1.0	null
MEOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.3907
FOSL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.5924
GSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.556
KMS-28BM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.931886
GSE217405_0_v_1_egfr_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
SUM 229PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.97555
LMX1A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.8652
RALY	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.41812
DUX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.8955
HSF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.1048
UNCX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.0459
496100363_TCx_no dementia_TBI_95-99_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.47376
ISX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.7788
SIX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.1372
TBX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.5109
LBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.6241
COV644	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.28416
GSE216538_0_v_2_mrs2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
HCC2688	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.24123
KU812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24766
GSE224877_3_v_0_pctp_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Foxj3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	38.2201
TBX5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.0055
GSE165560_0_v_1_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
NCI-H2171	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02544
GSE122101,GSE122103_3_v_1_ssu72_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
NCI-H1792	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.843894
GSE165122_2_v_1_metformin_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
SU-DHL-6	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.49362
HCC2885	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.902932
HOXB9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8375
GSE149123,GSE149128_1_v_0_cdk7_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
ESX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.1667
HSF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.865
Perturb_17250_KO_Il17a_SRP069071	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-20.0
GSE188870,GSE188871_4_v_2_kat7_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE120370_0_v_3_thrombin_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
NKX6-1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.5429
RAD21_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MKN-45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02337
FLO-1	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.24687
H3K4me1_CH12.LX_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
ZNF282	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.5671
GSE111247_0_v_13_temozolomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
SKM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.933338
SW 1573	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.971116
SHOX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.3706
HOP-62	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.994041
496100442_PCx_possible Alzheimer's disease_no TBI_95-99_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.59467
GTL-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.64851
MDA-MB-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01839
POU3F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.3321
SIRPA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.79693
POU6F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.3828
DAOY	CCLE Cell Line Gene CNV Profiles	-1.0	-1.68316
Stat4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	45.2255
GBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.3727
Sox1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	35.2567
GSE188870,GSE188871_4_v_5_kat7_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
KMS-12-PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.862327
GSE200320_3_v_2_mfge8_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
purine ribonucleotide binding	GO Molecular Function Annotations 2015	1.0	null
ARGFX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.888
BACH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.016
HOXB3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.0907
MEIS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.3626
HCC1171	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.963712
HOXA6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.1147
HMGN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.05843
GSE224877_2_v_1_pctp_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
HCC2279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.9243
HCC1162	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.902932
GSE111247_0_v_8_temozolomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
TM31	CCLE Cell Line Gene CNV Profiles	-1.0	-2.77621
GSE228894_3_v_2_rnmt_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
VDR	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.73972
OPM2	CCLE Cell Line Gene CNV Profiles	1.0	1.44655
ELK1::HOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.8342
EVX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.9344
HOXB2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.7673
HT-115	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.69762
HCC2302	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.925251
TBCD	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.15795
HUP-T3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.18385
carbohydrate derivative binding	GO Molecular Function Annotations 2015	1.0	null
Sox11	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	28.957
HOXA10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.7461
Foxl2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	38.7895
H3K4me3_liver_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
GSE174701_1_v_7_maml3_human	RummaGEO Gene Perturbation Signatures	1.0	null
496100372_HIP_dementia_no TBI_84_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	11.5738
SW 837	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02337
SNU119	CCLE Cell Line Gene CNV Profiles	-1.0	-2.26355
H3K4me3_erythroblast_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
OXLD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.28609
HH	COSMIC Cell Line Gene CNV Profiles	1.0	2.15316
NUGC-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.06014
COV362	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.971116
GSE133329_2_v_3_trim28_human	RummaGEO Gene Perturbation Signatures	1.0	null
lb24	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.202
MKN45	CCLE Cell Line Gene CNV Profiles	1.0	1.41361
DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.2622
GSE211286_7_v_5_tcf12_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
HOXB5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.0472
SIX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.2254
STAT1::STAT2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	54.6113
POU4F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	94.4791
496100303_HIP_no dementia_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.74951
HLF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.2344
Vitelline membrane	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.343
Perturb_16550_KO_Pclaf_SRP130991	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	4.26343
CTCF_limb_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HNF1A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	49.7285
GSE93674_2_v_0_ezh2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
KMS21BM	CCLE Cell Line Gene CNV Profiles	1.0	2.39642
NCI-H2373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.26985
HOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.4753
GSE228181_4_v_5_idh1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
RAD21_MEL cell line_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SKNAS	CCLE Cell Line Gene CNV Profiles	1.0	2.03619
GSE224311_3_v_2_chaetocin_human	RummaGEO Drug Perturbation Signatures	1.0	null
COLO 320DM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.54772
HOXB4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.8903
PITX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.1198
PK-59	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02631
NCI-H2170	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.832613
Tbx6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.121
NFIL3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.0194
NCI-H2135	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.36193
PMC12186250-NIHMS2085662-supplement-3.xlsx-4111_TEAD4_peaks-Nearest_Ensembl_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
HOXC8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.7623
ONECUT1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.5029
POU1F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.0888
GSE217378_2_v_0_lin28b_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
RT11284	CCLE Cell Line Gene CNV Profiles	-1.0	-1.35113
GSE122101,GSE122103_0_v_1_ssu72_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GSE157594_6_v_4_nicotinamide_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
SNU-423	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.902932
Arid3a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	20.5926
CTCF_CH12.LX_mm9_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PROP1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	81.6356
GSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.8882
Foxf1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	16.7456
GSE127790_10_v_2_zcchc8_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Foxj2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	23.6846
JDP2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.1804
GSE162276_2_v_0_pparg_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Lhx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	29.8
H3K4me3_erythroblast_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
PL45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.915852
ZNF157	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.9384
Nfatc2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	24.8379
AIG1-type guanine nucleotide-binding (G) domain	InterPro Predicted Protein Domain Annotations	1.0	null
CHRNA10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.12798
GSE246053_4_v_2_hnf4a_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
ZNF582	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.8942
GSE165122_0_v_3_metformin_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
CAMA-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02337
PSMC3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.10003
PORCN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.02534
GSE216538_7_v_4_mrs2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GSE172020_1_v_3_testosterone_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
GSE243491_1_v_2_oxaliplatin_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
CAPAN-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.44339
SEPTIN7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.22873
TTC1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.35869
PA-TU-8902	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.06014
SW1783	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36492
GSE188870,GSE188871_0_v_5_kat7_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
MX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1661
HOXC9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.0888
GSE138019_3_v_2_nudt12_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
E2F7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.7193
NOB1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.9819
496100435_TCx_probable Alzheimer's disease_TBI_88_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.27831
GSE84678,GSE93902_1_v_2_bcl11b_human	RummaGEO Gene Perturbation Signatures	-1.0	null
DMS 79	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.859163
Foxo1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	16.1027
PMC8202205-NIHMS1706275-supplement-Table_S1.xlsx-Mesend_D2_GATA6-dependent-SYMBOL_GATA6	Rummagene Transcription Factor Associations 2026	1.0	null
ELF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.4336
Stat2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	74.1637
MOLP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.57616
NKX6-2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.4183
BICR22	CCLE Cell Line Gene CNV Profiles	-1.0	-1.51077
NR3C1-27076634-BEAS2B-HUMAN-LUNG-INFLAMMATION	ChEA Transcription Factor Targets 2022	1.0	null
ribonucleotide binding	GO Molecular Function Annotations 2015	1.0	null
GSE148692,GSE148695_1_v_0_satb2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GSE171269_1_v_3_pioglitazone_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
GSE173201_0_v_1_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
CDX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.358
GSE242096,GSE242098_1_v_0_med1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
HOXD8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.2559
BICR 31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.31753
GSE158715_2_v_4_cyp1b1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GSE174701_4_v_7_maml3_human	RummaGEO Gene Perturbation Signatures	1.0	null
EMX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.6011
TT	CCLE Cell Line Gene CNV Profiles	-1.0	-1.37181
HOXA5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.0181
LHX5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.5682
POU6F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.9355
SCLC-21H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.863836
G121	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.915852
MYF6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.7765
GSE111247_0_v_7_temozolomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
496100287_TCx_no dementia_TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.75585
HOXD10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.0593
PATU8902	CCLE Cell Line Gene CNV Profiles	-1.0	-1.39699
HCC364	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.931886
COV413B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02631
GSE133213_11_v_3_znrf3_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
CDX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.1991
SHP77	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36772
PMC6151027-12864_2018_5080_MOESM3_ESM.xlsx-E18-D3_2440_AR-DEGs-Symbol_AR	Rummagene Transcription Factor Associations 2026	1.0	null
ribonucleoside binding	GO Molecular Function Annotations 2015	1.0	null
CAL 27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.34553
HCC1493	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.63584
NCI-H2196	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.971116
SPECC1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.5405
GSE247764_0_v_2_nell2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GSE133213_6_v_13_znrf3_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE168596_2_v_3_adiponectin_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
L1236	CCLE Cell Line Gene CNV Profiles	1.0	1.74741
FITM2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.84806
NUP58	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.07763
NR1I2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.5583
ZNF24	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.5734
NCI-H1693	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.06014
CCDC177	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.11927
SMC3	ENCODE Transcription Factor Targets	1.0	null
GSE212486,GSE212488_0_v_1_gata4_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE174418,GSE174421_2_v_3_mettl5_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
MDA-MB-330	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.90241
UM-UC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12811
BICR 22	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.41689
MIXL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.0902
GSE210101,GSE210114_0_v_3_urod_human	RummaGEO Gene Perturbation Signatures	1.0	null
VSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.121
PHOX2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	68.8701
UACC-257	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.902932
GSE206870,GSE206872_1_v_5_ascl1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Sox7	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	20.1477
HCC461	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.925251
Perturb_12861_KO_Clec4d_SRP282597	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	1.52353
GSE200352_4_v_8_pparg_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
BSX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.7426
Pou5f1::Sox2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	42.1133
GSE229973_3_v_7_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE154219_0_v_2_cholestyramine_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
Perturb_17320_KO_miR106b~25_ERP121195	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	15.2821
EVX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.1599
EMX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.9138
NFE2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.2325
NCI-H2452	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.859163
OCIMY5	CCLE Cell Line Gene CNV Profiles	-1.0	-1.45321
Human cytomegalovirus infection	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.715
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.18385
ZNF211	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.1587
GSE157594_6_v_2_nicotinamide_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
TBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.8159
Hmx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.8678
HOXB2::ELK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.3655
HOXA3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.8829
496100545_HIP_possible Alzheimer's disease_no TBI_95-99_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	6.79862
ZNF652	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.7737
GSE200352_5_v_8_pparg_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
HOXD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.3036
GSE216538_0_v_4_mrs2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
HOXD4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.7737
ARTN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.01491
UMUC3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34472
GABPA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.8653
GSE157594_0_v_7_nicotinamide_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
HCC38	CCLE Cell Line Gene CNV Profiles	-1.0	-2.71407
GSE248858_1_v_7_tcpobop_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
Nfat5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	29.4635
HMGA1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.22656
ZC3H11A	ENCODE Transcription Factor Targets	1.0	null
VAX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.3934
JEKO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.13095
RAX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.9869
JEKO1	CCLE Cell Line Gene CNV Profiles	1.0	2.46576
EFM-19	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.92675
PROX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.2015
PK-45P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.01669
Small_Intestine-enterocyte of epithelium of small intestine	Tabula Sapiens Gene-Cell Associations	1.0	4.12028
PMC6754502-41598_2019_50051_MOESM3_ESM.xlsx-Br_to_Fay_Thermoneutral_LPS-Gene_Symbol_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
LP-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11023
HCC827	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.832613
GSE149075_1_v_5_foxa2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE210101,GSE210114_2_v_3_urod_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE210655_3_v_2_cisplatin_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
OV7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.26985
GSE63048_11_v_8_morc1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
HOXA4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.4498
GSE133691_2_v_0_lgr5_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE133213_6_v_3_znrf3_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GSE183251_4_v_0_cyp2c70_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
purine nucleoside binding	GO Molecular Function Annotations 2015	1.0	null
GSE183251_1_v_0_cyp2c70_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
NCI-H441	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.92675
GSE183994_1_v_0_scml2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
gtp binding	GO Molecular Function Annotations 2015	1.0	null
HOXC10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.8038
GSE152937_6_v_5_slc16a13_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
MS751	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02544
anion binding	GO Molecular Function Annotations 2015	1.0	null
HCC1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.16616
GSE148695,GSE167284_2_v_1_satb2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GSE228894_0_v_1_rnmt_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
SUPHD1	CCLE Cell Line Gene CNV Profiles	1.0	2.04129
BACH2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.1729
heterocyclic compound binding	GO Molecular Function Annotations 2015	1.0	null
KLE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01839
FOXL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.6973
TLX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.9287
Stat6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	35.3207
GSE186620_0_v_1_ascl1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
H3K4me1_CH12.LX_mm9_4	ENCODE Histone Modification Site Profiles	1.0	null
SMC3_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HOXC4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.541
NCI-H358	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32965
GSE216538_1_v_6_mrs2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
NCI-H28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.06014
PMC6151027-12864_2018_5080_MOESM3_ESM.xlsx-E16_vs_E18_231_AR-DEGs-Symbol_AR	Rummagene Transcription Factor Associations 2026	1.0	null
H3K4me3_liver_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
GSE157594_5_v_7_nicotinamide_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
COLO320	CCLE Cell Line Gene CNV Profiles	1.0	1.58308
MTRES1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.07783
MSC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.7898
GSE200352_5_v_3_pparg_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Foxo3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	16.4383
MSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.9742
molecular_function	GO Molecular Function Annotations 2015	1.0	null
RPMI8402	CCLE Cell Line Gene CNV Profiles	1.0	1.96135
GSE158197_2_v_11_egfr_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PANC 04.03	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1661
NCIH358	CCLE Cell Line Gene CNV Profiles	1.0	1.34328
nucleoside binding	GO Molecular Function Annotations 2015	1.0	null
EFO-27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.52888
SNU886	CCLE Cell Line Gene CNV Profiles	-1.0	-1.9819
small molecule binding	GO Molecular Function Annotations 2015	1.0	null
PRRX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.7945
GSE148695,GSE167281_2_v_1_satb2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GSE120370_4_v_1_thrombin_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
EOL1	CCLE Cell Line Gene CNV Profiles	1.0	1.59626
EN1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.1356
HESX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.5539
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.902932
Nkx3-1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	16.6575
SNU423	CCLE Cell Line Gene CNV Profiles	-1.0	-1.83137
SCC-25	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02337
PMC12019518-ao5c02459_si_002.xlsx-Table_S3-Table_S3_Screening_of_genes_that_are_commonly_upregulated_in_cells_on_stiff_substrate_and_down-regulated_by_KD_of_UBE2A_B_AR	Rummagene Transcription Factor Associations 2026	1.0	null
MRPL4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.77974
PK-45H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.47199
EN2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.7102
THUMPD3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.60769
GSE148692,GSE148695_1_v_3_satb2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
DMRTC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.2584
HT115	CCLE Cell Line Gene CNV Profiles	-1.0	-1.80091
MEOX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.9568
SK-N-AS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.28403
GSE65617_2_v_3_aire_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
VAX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.8986
K029AX	CCLE Cell Line Gene CNV Profiles	-1.0	-1.49214
GSE103372_0_v_3_smad1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
NCI-N87	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11023
KMS-21BM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.74
GSE173578_1_v_0_atf4_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PDX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.1718
Hoxd13	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	16.9697
MOLP2	CCLE Cell Line Gene CNV Profiles	1.0	1.36963
SOX4	MotifMap Predicted Transcription Factor Targets	1.0	null
BARX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.1267
HCC1395	CCLE Cell Line Gene CNV Profiles	1.0	1.98886
HOXA7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.9662
GSE217405_3_v_2_osimertinib_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
HCC1143	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12811
JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.3782
GSE88819_6_v_4_tug1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
guanyl ribonucleotide binding	GO Molecular Function Annotations 2015	1.0	null
KMS-28PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.863836
GSE152699,GSE152723_0_v_1_vemurafenib_human	RummaGEO Drug Perturbation Signatures	1.0	null
LMX1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.0712
Stat5b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	27.5395
purine ribonucleoside binding	GO Molecular Function Annotations 2015	1.0	null
PMC6151027-12864_2018_5080_MOESM3_ESM.xlsx-E16_vs_D3_1784_AR-DEGS-Symbol_AR	Rummagene Transcription Factor Associations 2026	1.0	null
Perturb_16530_OE_Plagl2_SRP150086	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-1.73009
RAX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.5915