association	dataset	threshold value	standardized value
CRCGN009_HEPG2_24H:F03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.13505
ZNF766	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.366
Hodgkin lymphoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.899
ATF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.5016
MYC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.6455
CRCGN017_MCF10A.WT.HP_24H:O18	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.12305
GSE102132_2_v_1_irf3_human	RummaGEO Gene Perturbation Signatures	1.0	null
Nkx3-1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	22.073
GSE202434,GSE202438_7_v_0_talazoparib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Nr1h3::Rxra	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	32.1261
Pronucleus	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.037
MYBL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.0942
CRCGN015_MCF10A.WT.HP_24H:A20	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.0652
Isw1b complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.208
hdlm2	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.142
GLIS2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	56.994
Nfatc1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	25.4697
GSE74251_0_v_3_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
NFKB2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.9303
HOXB2::ELK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.4659
Hic1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	38.5022
ELK1::HOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.7052
RBPJ	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.52
FOS::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.8878
ZNF8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.9569
SWI/SNF complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.921
NR4A2::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.2693
Creb5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	34.3806
Ft	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.708
TCF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.5578
496100317_FWM_no dementia_no TBI_81_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.04503
IRF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	74.3333
Rarg	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	119.788
NURF complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.75
GSE113817_0_v_1_bach1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
nucleosome assembly	GO Biological Process Annotations 2025	1.0	null
FOSB::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.3785
CRCGN016_MCF10A.WT.HP_24H:C21	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.77213
CTCFL	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	65.3209
CRCGN012_HEPG2_24H:E07	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.48603
PRDM1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.4578
496100631_PCx_dementia_TBI_77_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.04618
Embryonic germ cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.679
NR2F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.9374
FOSL1::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.7019
ZNF140	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.8342
ERF::FIGLA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	47.043
Dmrt1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	49.4598
CRCGN016_MCF10A.TP53.M_24H:A22	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.41865
KLF6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	104.617
92br	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.446
CRCGN017_MCF10A.WT.HP_24H:C21	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.0909
PRPF19	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.28571
ACF complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.819
496100660_FWM_no dementia_no TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.31891
Spi1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	84.719
SK-MEL-2 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.695
ZKSCAN3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	50.019
INO80-type complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.727
CRCGN017_MCF10A.WT.HP_24H:K23	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.00055
Alcoholism	KEGG Pathways 2026	1.0	null
TUBA1B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.92201
NFYB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.5699
Hand1::Tcf3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	17.6552
EGR4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	98.9623
FOSL2::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.0842
Disease of metabolism	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.086
ZBTB18	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.0526
CRCGN013_HEPG2_24H:K13	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.29626
intracellular membrane-bounded organelle	GO Cellular Component Annotations 2025	1.0	null
KLF17	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	146.698
OSR2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.4766
Nr2e1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	48.1704
Lhx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	44.6
Papillary thyroid cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.806
JDP2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.392
Chondroblastoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.179
TFAP4::FLI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.5638
PMC6097700-pgen.1007515.s008.xlsx-S2_Table-S2_Table_SATB2_Cort_gene-set_list_SATB2	Rummagene Transcription Factor Associations 2026	1.0	null
REST	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	53.174
Atoh1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	90.5447
FIGLA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.7583
Cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.006
C-127 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.656
496100642_PCx_possible Alzheimer's disease_TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.2302
CRCGN015_MCF10A_48H:O01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.09163
INSM1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	74.3333
ZNF454	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	130.219
ZNF524	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.0971
496100473_TCx_possible Alzheimer's disease_TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.31335
Disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.354
ZNF175	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.0373
496100544_PCx_no dementia_no TBI_78_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.00844
SPIC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.6032
ZNF184	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.5629
KLF14	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	96.947
ATPase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.874
CRCGN015_MCF10A.TP53.M_24H:P13	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.1357
TGIF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.7982
496100612_HIP_no dementia_no TBI_95-99_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.26842
Dlx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	26.7556
GSE178907_5_v_3_fkrp_human	RummaGEO Gene Perturbation Signatures	-1.0	null
CRCGN017_MCF10A.WT.HP_24H:N16	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	6.05535
Zic2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	51.8033
Dmbx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.1651
chromosome, centromeric core domain	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.702
RELA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.0556
B-CPAP cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.878
Ino80 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.631
Primary hyperoxaluria	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.934
USF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.4358
TGIF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.7886
Thap11	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	50.4576
EPAS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.4016
SPDEF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.6256
ZNF740	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	373.952
Nfe2l2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	73.6625
non-membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
496100498_PCx_dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.26988
CRCGN012_HEPG2_24H:H24	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.6936
ZBTB7B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	52.7969
NR1I2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.1633
CRCGN015_HEPG2_48H:O01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.84347
ZNF816	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	66.509
CRCGN008_HEPG2_24H:K02	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.5426
Chromosome	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
Lymphatic system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.009
ZNF416	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.6928
EGR2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	72.3181
IRF8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.283
CRCGN014_HEPG2_24H:A06	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.04324
Perinuclear region of cytoplasm	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.879
PMC9534852-41598_2022_20572_MOESM4_ESM.xlsx-Sheet1-Supplementary_Table_S4_Transcriptomic_data_related_to_AHR_function_considered_for_metabolic_reconstruction_model_generation_AHR	Rummagene Transcription Factor Associations 2026	1.0	null
NR1D1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.7128
Nanog	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	22.5883
Prdm14	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	25.965
496100483_FWM_possible Alzheimer's disease_TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.36817
CRCGN016_MCF10A.TP53.M_24H:C18	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.51585
Dux	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	50.3026
Systemic lupus erythematosus	KEGG Pathways 2026	1.0	null
TFEC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.1386
Hoxa13	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	61.1313
Red color blindness	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.227
Organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.029
PKNOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.1325
FOSL1::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.9913
Cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.136
GSE103068_5_v_8_volasertib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
NR2F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	80.1295
Shox2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	29.0239
KLF15	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	123.276
IRF9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.2862
Ptf1a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	53.9425
Lef1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	17.9685
Anus disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.041
Plagl1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	37.539
CENP-A containing chromatin	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.702
PAX5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.8527
TCF12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.2725
496100456_TCx_possible Alzheimer's disease_no TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.39713
CRCGN016_MCF10A.TP53.M_24H:C10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.19215
HLF	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.21211
ERF::SREBF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.736
Dlx2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.5962
Immune system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.028
496100292_PCx_no dementia_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.20951
HPAEC cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.627
ETV2::FIGLA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	53.576
496100506_PCx_possible Alzheimer's disease_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.06852
Barr body	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.823
ZNF76	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.899
NFKB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.4721
ASCL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	60.2926
Female pronucleus	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.918
CRCGN012_HEPG2_24H:H15	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.8594
NFATC3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.1209
Lymphatic system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.028
SIX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.6285
ETV5::FOXO1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.6954
CRCGN015_HEPG2_48H:H04	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.09471
mRNA cleavage stimulating factor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.696
FLI1::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.7028
Reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.125
MSC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.002
GSE184892_7_v_1_trehalose_human	RummaGEO Drug Perturbation Signatures	1.0	null
Chondrocyte cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.627
496100619_HIP_no dementia_no TBI_84_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.7407
TP63	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.0485
Bach1::Mafk	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	63.2456
Foxf1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	26.5209
Msx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	29.7741
heterochromatin formation	GO Biological Process Annotations 2025	1.0	null
Nr2e3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	20.9565
Dlx4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	27.2618
Giant cell tumor cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.721
ERF::NHLH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.9697
mRNA processing	GO Biological Process Annotations 2025	1.0	null
Creb3l2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.0128
Spz1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	20.1667
NFYA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.971
ZNF675	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.9268
Genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.152
CRCGN015_HEPG2_48H:P19	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.44289
chromatin organization	GO Biological Process Annotations 2025	1.0	null
KLF10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	138.033
Nr1h2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	59.7894
Curli	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.684
RARA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	70.9684
Gata3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	40.9903
GRHL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.3201
Zic3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	86.4221
Stat5a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	31.5357
ZNF574	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.7132
Brahma complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.972
Germinal vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.793
senescence-associated heterochromatin focus	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.607
MZF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.1303
CRCGN014_HEPG2_3H:F03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.37222
Neurod2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	35.209
Morula	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.923
FOSL2::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.3126
Sox3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	33.8881
CRCGN015_HEPG2_48H:H05	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.31629
Nr1h4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	65.1434
Pax7	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	52.7923
496100567_PCx_no dementia_TBI_87_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.38297
Foxl2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	51.266
ZFP42	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.843
FOSB::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.3889
Disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.213
ETV5::HOXA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.975
ZNF24	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.7318
ZBTB26	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.7351
EGR1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	85.5114
GSE239844_8_v_10_crizotinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
KLF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	107.133
Synaptonemal complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.783
WICH complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.951
GSE153443_1_v_3_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE128076_1_v_3_doxycycline_human	RummaGEO Drug Perturbation Signatures	1.0	null
red-green color blindness	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.081
Bfa1-Bub2 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.92
ETV5::DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.5292
Yy1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	64.3588
SP5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.6956
KM-H2 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.038
Crx	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.5763
DMRTC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.5391
HLF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.6866
ZNF768	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.2083
Dermatofibroma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.721
PMC4909989-ncomms11840-s2.xlsx-down-regulate-TEAD4-S_YAP_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
Autosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.064
Nr2f6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	142.813
CRCGN011_HEPG2_24H:K08	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.26825
Ikzf3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	37.5816
Arid3a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	24.1852
CRCGN015_MCF10A.TP53.M_24H:O12	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.66045
CAF-1 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.579
Hmx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	50.2078
PMC3804941-supp_jem.20122709_JEM_20122709_TableS1.xlsx-Suppl_Table_1C-1772_genes-Table_S1_C_1_772_significantly_overexpressed_genes_during_AR_when_combining_p-values_at_FDR_20_AR	Rummagene Transcription Factor Associations 2026	1.0	null
Ar	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	54.3859
HS-294T cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.672
Necroptosis	KEGG Pathways 2026	1.0	null
Sex chromatin	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.104
Hematopoietic system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.039
TGIF2LX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.5203
CRCGN016_MCF10A.TP53.M_24H:C21	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.62547
Swr1 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.736
Inherited metabolic disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.116
ZBTB11	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.2367
496100511_TCx_no dementia_no TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.04521
GSE102132_0_v_1_irf3_human	RummaGEO Gene Perturbation Signatures	1.0	null
Pachytene cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.827
HES6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.8886
SP4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	117.724
Sox6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	44.3534
NEUROD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.5167
Nkx2-1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	27.9586
Prefoldin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.588
PPARG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.6786
Ebf2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	25.3468
Polytene chromosome puff	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.097
Anal carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.166
Elf5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	47.8797
CRCGN013_HEPG2_24H:H24	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.7966
CRCGN017_MCF10A.TP53.M_24H:C20	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.54828
HOXD12::ELK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.3302
CRCGN014_HEPG2_24H:H15	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.19465
RREB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	475.364
ZNF343	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	71.3339
NFIC::TLX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.0625
KLF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	91.4253
TFEB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.2944
PMC12302741-40659_2025_634_MOESM1_ESM.pdf-1-ERF_ERF	Rummagene Transcription Factor Associations 2026	1.0	null
nucleus	GO Cellular Component Annotations 2025	1.0	null
MEF2B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.5498
REL	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8235
THAP1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.9025
Erg	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	45.6743
Male infertility	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.152
FLI1::DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.0253
NR2C1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.2542
Familial hypocalciuric hypercalcemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.181
CRCGN012_HEPG2_24H:M13	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.59036
CRCGN008_HEPG2_24H:L14	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.8533
IM-9 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.76
HIR complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.882
Mafg	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	66.1021
TP53	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	49.2798
MEF2D	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.8016
CRCGN015_HEPG2_48H:L02	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.00404
VEZF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	64.0603
Primary hyperoxaluria type 1	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.942
NRL	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.841
GSE248887_0_v_1_dkk1_human	RummaGEO Gene Perturbation Signatures	1.0	null
RARA::RXRG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.8958
Nfatc2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	48.3686
ZNF707	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	62.1011
CRCGN017_MCF10A.WT.HP_24H:C20	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.476
NKX2-2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.4211
Foxj3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	43.2133
XY body	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.195
KLF12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	101.244
Rarb	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	159.394
Stat6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	33.507
KLF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	131.369
mRNA metabolic process	GO Biological Process Annotations 2025	1.0	null
Isw1a complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.184
H3 histone acetyltransferase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.942
MAZ	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	127.863
CRCGN008_HEPG2_24H:J23	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.35415
Seminoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.06
JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.5262
Pou5f1::Sox2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	64.2655
Neutrophil extracellular trap formation	KEGG Pathways 2026	1.0	null
Checkpoint clamp complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.635
FOSL2::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.163
CRCGN015_MCF10A.WT.HP_24H:C20	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.56527
Anus cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.065
Prdm4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	27.4572
496100465_HIP_possible Alzheimer's disease_TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.76557
HINFP	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.7882
Sox5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	29.7661
KLF16	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	168.823
Hoxd13	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	35.8663
SWI/SNF superfamily-type complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.881
ZNF449	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	78.608
KLF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	85.2074
CRCGN010_HEPG2_24H:D11	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.6938
RNA processing	GO Biological Process Annotations 2025	1.0	null
GSE231745_1_v_0_venetoclax_human	RummaGEO Drug Perturbation Signatures	1.0	null
NKX2-8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.3775
MYOD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	49.5766
496100615_HIP_possible Alzheimer's disease_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.55439
CRCGN012_HEPG2_24H:E02	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.05261
E2F8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.4817
CRCGN015_MCF10A.TP53.M_24H:B06	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.23548
ZBTB7A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.4484
SREBF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	54.4063
MSANTD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.299
Pparg::Rxra	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	64.0416
496100492_TCx_probable Alzheimer's disease_no TBI_89_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.46022
HAND2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.5909
ETV5::FIGLA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	73.7949
GSE216757_4_v_1_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
ZSCAN31	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.899
GSE74251_2_v_1_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
DUX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.5035
Esrrg	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	64.3108
CRCGN014_HEPG2_3H:N15	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.44507
ZBED1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.6992
MEIS2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.6265
Sox17	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	77.3564
496100536_HIP_no dementia_no TBI_87_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.35949
Mafb	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	68.9311
Zic1::Zic2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	36.966
NR1H4::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.4921
TGIF2LY	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.8683
ETV1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.0693
SRF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.9437
THRB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	62.5849
Tbx6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	30.4505
496100510_HIP_possible Alzheimer's disease_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.68415
NuRD complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.225
chromosome, subtelomeric region	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.985
GSE240386,GSE242143_1_v_6_morc2_human	RummaGEO Gene Perturbation Signatures	1.0	null
Stat2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	138.814
CRCGN014_HEPG2_24H:F08	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.08652
i10	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.82
NFIC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	95.5597
SNAI2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.1655
TWIST1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.6005
Chromatin	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
POU6F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.2116
GSE210101,GSE210114_2_v_3_urod_human	RummaGEO Gene Perturbation Signatures	1.0	null
PATZ1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	183.54
ERF::HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.4433
MAX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.6659
Nr5a1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	60.1869
CRCGN017_MCF10A.TP53.M_24H:C21	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.48165
ZNF682	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	59.5879
ATP-dependent chromatin remodeling	KEGG Pathways 2026	1.0	null
CRCGN013_HEPG2_24H:I19	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.07756
CRCGN016_MCF10A.WT.HP_24H:A22	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.70496
CRCGN013_HEPG2_24H:G14	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.0932
CRCGN008_HEPG2_24H:A13	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.15315
CRCGN012_HEPG2_24H:J09	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.10694
Activin AB complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.583
TFAP4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.9491
CRCGN012_HEPG2_24H:K07	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.09979
CRCGN015_MCF10A.WT.HP_24H:P24	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.34884
BRCA1-A complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.572
KLF13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.3756
Anus benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.454
Primary spermatocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.904
CRCGN016_MCF10A.TP53.M_24H:C20	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.74217
NKX2-5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.3352
Perinuclear theca	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.403
Foxo1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	32.2013
CRCGN014_HEPG2_24H:A20	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.93136
Foxo3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	16.3592
496100390_PCx_probable Alzheimer's disease_no TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.70984
Melanoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.091
U2-type spliceosomal complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.019
Isw1 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.375
RUNX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.404
SP3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	123.164
GSE210101,GSE210114_4_v_3_urod_human	RummaGEO Gene Perturbation Signatures	1.0	null
Foxj2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	17.8852
Hmx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	44.6165
CRCGN014_HEPG2_3H:P06	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.31924
CRCGN008_HEPG2_24H:L15	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.94555
MXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.4469
Runx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	22.72
SMAD2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.3893
nucleosome organization	GO Biological Process Annotations 2025	1.0	null
ELK1::HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.4093
BHLHE41	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.8127
ETV7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.7404
ZNF684	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	69.2175
Tcf21	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	28.823
CRCGN009_HEPG2_24H:K07	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.62561
Nfat5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	76.3146
CRCGN017_MCF10A.TP53.M_24H:P19	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.49166
GSE210101,GSE210114_5_v_3_urod_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE74251_2_v_3_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
Female germ cell nucleus	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.793
NR2F6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.8563
496100539_HIP_probable Alzheimer's disease_TBI_78_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.23937
Rfx6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	45.1409
MITF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.4625
NR2C2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	47.6881
DBIRD complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.056
NKX2-3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.8507
SP2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	98.4949
Euchromatin	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
Arid5a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	22.2172
Hmga1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	24.4695
496100607_TCx_dementia_TBI_77_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.8684
Bacterial biofilm matrix	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.682
KLF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	110.294
SIX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8782
ZBTB32	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.1631
SREBF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.4016
ZBTB7C	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	77.8434
MAX::MYC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.9048
ZNF320	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	190.252
T-cell prolymphocytic leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.135
Sox7	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	74.0202
HES7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.0202
Carbohydrate metabolic disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.081
Vdr	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	21.5894
NFIB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	47.6273
Msgn1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	52.6107
Ppara	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	55.7791
KLF11	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	115.546
ETS2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.0129
Pericentric heterochromatin	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.825
ZNF148	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	237.297
KLF9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	81.3176
Matrilin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.584
BACH2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.7006
EGR3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	90.3322
496100307_FWM_possible Alzheimer's disease_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.25588
Macronucleus	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.576
Synaptonemal structure	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.776
Nobox	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	13.9737
Mecom	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	100.037
496100623_PCx_no dementia_TBI_86_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.19816
Ooplasm	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.509
MYCN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.8938
ZNF692	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	79.3218
MOZ/MORF histone acetyltransferase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.052
USF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.6575
FOSL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.8274
TFAP4::ETV1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	53.3511
Dlx5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.595
ZBTB24	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	88.8841
ATF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.7689
496100399_PCx_no dementia_no TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.53406
U2 snRNP	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.949
CRCGN015_HEPG2_48H:M22	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.99025
Spermatid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.708
ZIM3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.4425
IRF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.2253
TP73	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.2105
496100481_PCx_no dementia_no TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.27596
Male pronucleus	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.21
CRCGN008_HEPG2_24H:L13	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.6536
CRCGN015_MCF10A.WT.HP_24H:B10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.76277
HDA1 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.581
HIC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.5754
KLF5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	206.927
IRF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.1071
Lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.037
Intracellular non-membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
CRCGN015_HEPG2_48H:L03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.46348
protein-DNA complex assembly	GO Biological Process Annotations 2025	1.0	null
Prdm15	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	51.2061
496100606_PCx_possible Alzheimer's disease_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.50373
EBF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.0317
Infertility	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.086
TCF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.4115
PMC4909989-ncomms11840-s2.xlsx-down-regulate-TEAD4-FL_YAP_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
FOS	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.1945
SMC loading complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.612
RFX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	58.621
DNA packaging complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.912
NR1H2::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.76
PRC1 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.313
BNC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.6513
TFE3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.6624
CENP-A containing nucleosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.721
CRCGN015_HEPG2_48H:M23	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.65609
NKX2-4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.0661
496100531_FWM_possible Alzheimer's disease_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.27693
CRCGN016_MCF10A.WT.HP_24H:C20	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.48988
ZKSCAN5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.0682
RSF complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.964
GSE200982_0_v_2_plac8_human	RummaGEO Gene Perturbation Signatures	-1.0	null
ZNF382	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.3751
Secondary spermatocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.103
Pulmonary artery endothelial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.56
CRCGN016_MCF10A.TP53.M_24H:D15	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.28017
Disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.149
Nr5a2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	32.689
MGA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.2104
NFIX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	54.4995
non-Hodgkin lymphoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.533
Chromocenter	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.057
SP8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	141.487
JUN::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.598
Hmx2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	81.0444
ZNF708	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.7114
GCM2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.1251
negative regulation of gene expression, epigenetic	GO Biological Process Annotations 2025	1.0	null
PMC12019518-ao5c02459_si_002.xlsx-Table_S3-Table_S3_Screening_of_genes_that_are_commonly_upregulated_in_cells_on_stiff_substrate_and_down-regulated_by_KD_of_UBE2A_B_AR	Rummagene Transcription Factor Associations 2026	1.0	null
CHD-type complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.224
ETV2::DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.1934
SP9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	135.935
TFAP2C	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	130.213
JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.2642
Hand1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	24.549
Collagen beaded filament	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.768
Jun	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	17.4812
Isl1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	21.7951
SNAI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.8185
ZNF135	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	58.2004
Sox11	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	72.9453
CREM	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.3067
Nr1h3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	69.384
MLL1/2 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.634
Rxra	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	54.9327
RXRB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	49.3711
ZEB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.3624
ZNF189	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.8671
Irf1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	192.925
h4s	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.62