association	dataset	threshold value	standardized value
BRD-K68497273	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.30758
BRD-K26314798	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.31024
FOSL1_KO_GSE43695_681_mouse_lung, bleomycin treated	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
mantle zone of r10BL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.16908
DPS complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.924
GSE239578_5_v_6_cxadr_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
CRCGN015_MCF10A.WT.HP_24H:C07	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.43057
BRD-K02210445	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.33123
BRD-K67092184	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.4305
Fat body	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.206
Nervous System Diseases	CTD Gene-Disease Associations	1.0	1.50852
ADAM11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.69176
NCI-H1869	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25661
Retinal degeneration	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.234
Pretectal region	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.18167
Perturb_10734_KO_Mettl14_SRP282531	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-11.3321
EHMT2_KD_GDS4800_315_human_MDA-MB231	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
BRD-K02311826	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.01706
cyanelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.562602
microbody lumen	GO Cellular Component Annotations 2015	1.0	null
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-VS-A94X-01A-11R-A38B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
FOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.6908
hsa-miR-4795-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
HDAC_INHIBITION - trichostatin A_GDS2452_709_human_Endothelial cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
BRD-K66214486	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.05484
orbital frontal cortex_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.50206
MZ in lateral temporal-occipital cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.924591
anion binding	GO Molecular Function Annotations 2025	1.0	null
2313287	CCLE Cell Line Gene Expression Profiles	-1.0	-1.69939
ULK1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.75557
Linear nucleus of the medulla	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.03352
cellular process	GO Biological Process Annotations 2015	1.0	null
Gynoecium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.15
hsa-miR-4768-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
PMC7021771-41467_2020_14684_MOESM7_ESM.xlsx-CASZ1_ChIPseq_in_SMS-CTR_MEKi-Nearest_Ensembl_CASZ1	Rummagene Transcription Factor Associations 2026	1.0	null
BRD-K91241684	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.2171
intracellular membrane-bounded organelle	LOCATE Curated Protein Localization Annotations	1.0	null
Kidney renal papillary cell carcinoma_KIRP_TCGA-BQ-7061-01A-11R-1965-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ELK1::HOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.5147
Hydathode	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.696
CRCGN016_MCF10A.WT.HP_24H:N14	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.4831
BRD-K70870890	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.25578
Kidney renal papillary cell carcinoma_KIRP_TCGA-BQ-5890-11A-01R-1592-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE238018_3_v_0_mxra8_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Nucleus of Darkschewitsch	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.42136
Fetal Growth Retardation	CTD Gene-Disease Associations	1.0	1.75241
CRCGN016_MCF10A.WT.HP_24H:K10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.25401
BRD-K69521416	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.44423
Ovarian cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.394
Overnutrition	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.496
NCI-H2171	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.944037
Ossification of the posterior longitudinal ligament of the spine	GWAS Catalog SNP-Phenotype Associations 2025	1.0	1.3
hypocotyl	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.68952
BRD-A19615705	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.11289
Posterior pretectal nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.34418
Retrosplenial area, ventral part, layer 2	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.41542
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
BRD-K52001024	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.67061
Neural Tube Defects	CTD Gene-Disease Associations	1.0	1.30026
organic hydroxy compound metabolic process	GO Biological Process Annotations 2015	1.0	null
Cotyledon	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.302
MKN-45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10973
SYK_druginhibition_152_GSE34176	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	-1.0	-1.89357
WDR75	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.22282
SW1116	CCLE Cell Line Gene Expression Profiles	1.0	1.83714
H3K4me3_BE2C_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
18318837-TableS1	GeneSigDB Published Gene Signatures	1.0	null
Urinary bladder cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.22
CORL311	DepMap CRISPR Gene Dependency	1.0	6.10721
BRD-K00530465	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.86698
microbody membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.750904
CRCGN009_HEPG2_24H:M19	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.0864
CRCGN017_MCF10A.WT.HP_24H:E04	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.45853
BRD-K06830450	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.42943
peroxisome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.94461
MYC_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
dorsolateral prefrontal cortex_10 mos_M_12977	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.948743
cell part	LOCATE Curated Protein Localization Annotations	1.0	null
CEBPB_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Guard cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.65
Thylakoid lumen	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.905
PMC4269325-NIHMS634665-supplement-supp_table4.xls-H3K27me3_TRIM37_KD-Unnamed_2_AR	Rummagene Transcription Factor Associations 2026	1.0	null
Fibrosis	CTD Gene-Disease Associations	1.0	1.9372
Egg	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.483
thorax muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.185159
CRCGN015_MCF10A.WT.HP_24H:B10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.54962
ARID3A	ENCODE Transcription Factor Targets	1.0	null
C38 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.648
Dorsal tegmental nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.12278
FOXO1::ELK3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.3945
BRD-K19946529	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	5.14797
Transthyretin amyloidosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.469
Anterior olfactory nucleus, dorsal part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.98197
GSE235945_1_v_0_pikfyve_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Venom apparatus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.652
BRD-K00793226	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.0003
Chloroplast	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.35
BRD-K07525144	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.41039
BRD-K09460582	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.59708
BRD-K60734771	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.06113
ZNF8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.0546
Gingival fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.678
BRD-K99530482	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.15512
hsa-miR-660	TargetScan Predicted Conserved microRNA Targets	1.0	0.283838
Breast cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.028
orbital frontal cortex_23 yrs_M_12300	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.66238
BRD-K43000271	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.97328
BRD-K91506006	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.30334
Globus pallidus, external segment	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.09411
Galactosemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.089
peroxisomal part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
mantle zone of CoPD	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.37806
hsa-miR-3925-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
IZ in midlateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.68851
HCC1599	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.961842
BRD-K68705041	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.31059
BCL6B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.2441
BRD-K90934902	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.18019
Apical meristem	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.96
BRD-A05635986	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.53561
CRCGN017_MCF10A.WT.HP_24H:K22	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.89495
ASAP complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.203
BRD-K95927760	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.71317
Carpel	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.151
oxidoreductase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.089087
FOXK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.7803
animal	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
BRD-K32146668	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.62285
photosystem ii oxygen evolving complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.350243
GSE166294_0_v_1_etv5_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
CRCGN017_MCF10A.WT.HP_24H:G01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.42993
CRCGN015_MCF10A_48H:J16	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	8.205
Brain Lower Grade Glioma_LGG_TCGA-E1-A7Z2-01A-21R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Endocrine system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.8
alpha,alpha-trehalose-phosphate synthase complex (UDP-forming)	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.795
CRCGN015_HEPG2_48H:G05	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	6.61324
ZNF766	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.0326
H3K4me1_endothelial cell of umbilical vein_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
GSS	CCLE Cell Line Gene Expression Profiles	-1.0	-1.83909
GSE63048_11_v_12_morc1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GSE149075_1_v_5_foxa2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
CRCGN015_MCF10A_48H:G05	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	7.77385
valinomycin-5906	CMAP Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
rectum	HPA Tissue Protein Expression Profiles	1.0	0.806843
HPAEC cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.567
TAMALIN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.61568
Final leaf	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.922
mantle zone of r5Lim	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.25964
oxidation-reduction process	GO Biological Process Annotations 2015	1.0	null
blood	GTEx Tissue Gene Expression Profiles	1.0	0.937711
Corneal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.307
MDAMB453	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.43432
MDST8	CCLE Cell Line Gene Expression Profiles	1.0	1.41937
glucose metabolism disease	GWASdb SNP-Disease Associations	1.0	0.396891
MYC-19829295-ESCS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
hsa-miR-665	TargetScan Predicted Conserved microRNA Targets	1.0	0.404082
MEL-JUSO	COSMIC Cell Line Gene Mutation Profiles	1.0	null
KYSE-520	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03071
BRD-K15882320	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.15107
oxidoreductase activity, acting on the aldehyde or oxo group of donors, oxygen as acceptor	GO Molecular Function Annotations 2025	1.0	null
CCDC163	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.28846
BRD-K27092365	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.29362
small molecule metabolic process	GO Biological Process Annotations 2015	1.0	null
HNF4A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	55.8776
CRCGN017_MCF10A.TP53.M_24H:K23	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	7.9802
Brain Lower Grade Glioma_LGG_TCGA-HT-7680-01A-11R-2256-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Gonadal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.417
BRD-K34910830	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.16633
BRD-K04036799	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.14553
Gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
GSE190534,GSE190536_0_v_3_cyclophosphamide_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
CRCGN013_HEPG2_24H:G14	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.5491
Jaundice	CTD Gene-Disease Associations	1.0	1.18685
primary visual cortex (striate cortex, area V1/17)_19 pcw_F_12885	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.50179
medium-chain-(s)-2-hydroxy-acid oxidase activity	GO Molecular Function Annotations 2015	1.0	null
peroxisomal membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.754076
liminal part of the r5 alar plate	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.25964
intermediate part of r1B	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.14965
GSE157594_0_v_7_nicotinamide_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-KK-A6E7-01A-11R-A31N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC8104016-hcg-12-e002353-s006.xlsx-mTHP-1-LPS_Prom-Prom_Prom-GWAS-RefSeq_Name_1_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
acute lymphoblastic leukemia	GAD Gene-Disease Associations	1.0	null
area postrema	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.6811
BRD-K05417183	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.32353
Condensed chromosome, centromeric region	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.569
medial superior olive	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.14635
hsa-miR-181c	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
Subparafascicular area	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.40485
Histiocytic lymphoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.727
Abnormalities, Drug-Induced	CTD Gene-Disease Associations	1.0	1.86823
MDA-MB-231 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.665
SOX2-27498859-CHIP-SEQ-STOMACH-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
IRF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	107.33
Sensory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.823
seedling	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.85997
GSE226285_3_v_1_glutathione_human	RummaGEO Drug Perturbation Signatures	-1.0	null
BRD-K41649962	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.4416
intracellular part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.945432
Blindness	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.788
Perturb_13371_OE_TRF2_SRP290161	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-3.91206
CRCGN016_MCF10A.TP53.M_24H:A17	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.10895
GSE171712_0_v_1_scgb1a1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
layer III of rostral entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.00114
PAM complex, Tim23 associated import motor	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.065
GSE224742_0_v_1_slc1a5_human	RummaGEO Gene Perturbation Signatures	-1.0	null
mh22a	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.818
Carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.841
Central nervous system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.629
Adenocarcinoma	CTD Gene-Disease Associations	1.0	1.06588
Perturb_8373_OE_AC093797.1_SRP344034	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-17.3288
SIX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.186
Cuticle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.226
CRCGN012_HEPG2_24H:D09	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.25666
BRD-K51654114	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.07811
Germ plasm	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.198
CRCGN014_HEPG2_3H:M21	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.4303
GSE202434,GSE202438_12_v_14_talazoparib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE202434,GSE202438_2_v_5_talazoparib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
FMN-dependent alpha-hydroxy acid dehydrogenase, active site	InterPro Predicted Protein Domain Annotations	1.0	null
GSE157777_2_v_0_foxa3_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Protein localization	Reactome Pathways 2024	1.0	null
BRD-K26680822	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.38824
H3K4me1_A549_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
Adenoma	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.604
NCI H226	BioGPS Cell Line Gene Expression Profiles	1.0	1.18997
GSE202284,GSE202289_3_v_4_bmal1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Parasubiculum, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.08946
non-arteritic anterior ischemic optic neuropathy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.133
Bpe	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.463
BRD-K98251998	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.14885
bed nucleus of stria terminalis	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.06782
Plastid outer membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.815
FAM104A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.47915
BRD-K96280720	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.16242
movements	GeneRIF Biological Term Annotations	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-P3-A5QA-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Neurotoxicity Syndromes	CTD Gene-Disease Associations	1.0	1.1294
Cellulose microfibril	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.275
CRCGN015_HEPG2_48H:K10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.5397
Organ system benign neoplasm	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.604
genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.043293
BRD-K93601851	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.40832
BRD-K87080069	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.06459
Microsporidian	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.027
Basolateral amygdalar nucleus, anterior part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.10103
RTH-149 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.818
Whole body	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
GSE237040_4_v_1_notch3_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
KMBC2	DepMap CRISPR Gene Dependency	1.0	3.47801
BRD-K93126086	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.25188
GSE216326_2_v_0_sulodexide_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
BRD-K21955645	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.44171
PMC8519939-41525_2021_248_MOESM5_ESM.xlsx-NFE2L2_V2-Gene_name_NFE2L2	Rummagene Transcription Factor Associations 2026	1.0	null
HCC364	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14386
P53-22387025-ESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
BRD-K14392329	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.26698
emx2_20962046_e10dot5_urogenital_epithelium_lof_mouse_gpl1261_gds3173	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	-1.0	-0.056942
Prediabetes syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.0
RAD50	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.16394
Chloroplast envelope	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.513
Cortical amygdalar area, posterior part, medial zone, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.19347
PC3	CCLE Cell Line Gene Expression Profiles	1.0	2.08731
Lacquer	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.841
MKN1	GDSC Cell Line Gene Expression Profiles	-1.0	-1.53748
PMC11511861-41420_2024_2216_MOESM2_ESM.xlsx-siYAP_myc_bound-MYC_targets_from_chipseq_atlas_at_least_2_chip-seqs_over_4_in_A459_MYC	Rummagene Transcription Factor Associations 2026	1.0	null
SCC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.46204
LUDLU1	CCLE Cell Line Gene CNV Profiles	1.0	1.72648
Liver Failure	CTD Gene-Disease Associations	1.0	1.02188
BRD-K37760996	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.46411
Cholestasis	CTD Gene-Disease Associations	1.0	1.2975
BRD-K64182862	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.64152
active	GeneRIF Biological Term Annotations	1.0	null
GSE192663_3_v_2_acly_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Blood plasma	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.419
oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor	GO Molecular Function Annotations 2023	1.0	null
CRCGN017_MCF10A.WT.HP_24H:N03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.82796
H3K4me1_liver_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
BRD-K36764343	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.03021
BRD-K67873600	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.36895
BRD-K76353834	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.06243
cancer	GWASdb SNP-Disease Associations	1.0	0.047045
GSE202434,GSE202438_7_v_14_talazoparib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
primary auditory cortex (core)_13 yrs_F_12831	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.890696
Central amygdalar nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.96133
GSE238018_3_v_2_mxra8_human	RummaGEO Gene Perturbation Signatures	-1.0	null
NCIH1869	CCLE Cell Line Gene CNV Profiles	-1.0	-1.40098
VZ in septal region	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.07207
Neoplasm Metastasis	CTD Gene-Disease Associations	1.0	1.02708
BRD-K61551681	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.40294
SKMM2	DepMap CRISPR Gene Dependency	1.0	3.08836
BRD-K73637411	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.08214
GATA6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.4223
SMAD1-18555785-CHIP-SEQ-ESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
POU2F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.678
GSE120370_4_v_3_thrombin_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
SMAD4	ChEA Transcription Factor Targets	1.0	null
GSE157777_1_v_0_foxa3_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
BRD-K89216747	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.78946
central nucleus of inferior colliculus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.31845
CRCGN016_MCF10A.TP53.M_24H:P23	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.21215
Shoot tip	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.037
agranular insular cortex (area Iag)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.41286
BRD-K93040255	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.21273
ML-2 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.843
Pellicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.926
Primary Hyperoxaluria, Type I	DisGeNET Gene-Disease Associations	1.0	null
GSE147210_3_v_4_kmt2d_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Cystic fibrosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.434
BRD-K24930745	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.08661
U266B1	CCLE Cell Line Gene Expression Profiles	1.0	1.81273
ARID3A	JASPAR Predicted Transcription Factor Targets	1.0	null
HCC1428	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
GSE124932_2_v_1_sarm1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Brain capillary endothelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.019
GSE169155_3_v_7_acetaminophen_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
Diabetic retinopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.135
substituent	GeneRIF Biological Term Annotations	1.0	null
nerve	GTEx Tissue Gene Expression Profiles	-1.0	-1.08658
Subparafascicular nucleus, magnocellular part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.25019
NCI-H2803	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.01201
Calcitonin family receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.812
foreign-body giant cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.825
hsa-miR-802	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
thioredoxin-disulfide reductase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.345
orbital frontal cortex_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.3757
Bundle sheath	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.688
frontalcortex	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-0.829487
KB cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.828
BRD-K27028848	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.09571
surrounded	GeneRIF Biological Term Annotations	1.0	null
CRCGN014_HEPG2_3H:D07	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.60066
periventricular stratum of AStr	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.91802
SARS-CoV MA15_Day7-PFU-10^5_None_GSE50000	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.55582
BRD-K32862383	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.66339
Medullary reticular nucleus, ventral part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.62327
Prostate adenocarcinoma_PRAD_TCGA-CH-5772-01A-11R-1580-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K95863777	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.18313
Plantlet	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.825
PMC3500769-srep00875-s3.xls-AP1-Time_24_JUN	Rummagene Transcription Factor Associations 2026	1.0	null
BRD-K04667232	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.27027
PMC8766486-42003_2021_2990_MOESM3_ESM.xlsx-ST12-Unnamed_8_KLF6	Rummagene Transcription Factor Associations 2026	1.0	null
mitochondrion	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.490944
Dlx2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	23.3454
Orbit	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.215
FOXL1	JASPAR Predicted Transcription Factor Targets	1.0	null
CW2	CCLE Cell Line Gene Expression Profiles	-1.0	-1.72391
Primary bacterial infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.474
Artery disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.787
r2 part of basointermediate reticular formation	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.00581
SUIT-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20214
bronchus	HPA Tissue Protein Expression Profiles	1.0	0.806843
Disease of anatomical entity	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.821
BRD-K66735533	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.53671
UNC13D	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.96322
Fruit	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.041
CRCGN015_MCF10A_48H:M16	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	7.60895
RUNX2-22187159-PCA-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
H3K9me3_NT2-D1_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
16423883-Table2S	GeneSigDB Published Gene Signatures	1.0	null
neurological	GAD High Level Gene-Disease Associations	1.0	0.293278
Leaf tip	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.567
Benzoylformic Acid	DrugBank Drug Targets	1.0	null
Pou5f1::Sox2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	25.3917
BRD-K71919612	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.20481
MAFK_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
pectoral muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.276846
EP300_SK-N-SH_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GSE76425_0_v_5_lenalidomide_human	RummaGEO Drug Perturbation Signatures	1.0	null
CNIH1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.9102
GGH	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.91359
BRD-K60777422	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.04534
CRCGN017_MCF10A.TP53.M_24H:C19	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	6.5673
Meristem	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.116
PMC7397849-supp_gad.338681.120_Supplemental_Table_S3.xlsx-S3L_Peaks_2SA-YAP1_TEAD4-Unnamed_11_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
GSE246053_1_v_2_hnf4a_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
CRCGN015_MCF10A.TP53.M_24H:O12	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.79365
NIH:OVCAR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10449
MAF::NFE2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.145
H2AFZ_CD14-positive monocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Drug-Induced Liver Injury	CTD Gene-Disease Associations	1.0	2.25321
PDX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.6324
BRD-K73969016	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.32344
Bladder disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.287
MIA-PaCa-2	GDSC Cell Line Gene Expression Profiles	-1.0	-1.56387
EFM-19	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03071
Orthogonal array	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.891
NR3C1-21868756-MCF10A-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
BRD-K10011427	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.37755
Midgut	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.227
CRCGN015_MCF10A.WT.HP_24H:G06	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.83184
inner SZ in posterior parahippocampal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.01553
carbohydrate derivative binding	GO Molecular Function Annotations 2015	1.0	null
BRD-K47143916	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.1599
Extracellular membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.225
CUX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.0561
Egg yolk	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.892
SQSTM1_OE_GDS2653_651_human_IMR-32 neuroblastoma cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
OLIG1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.7714
HELA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10973
CRCGN015_MCF10A_48H:P05	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	6.01678
Spinal column	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.213
DLX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.3323
DLX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.7939
GSE149075_2_v_4_foxa2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
carbohydrate metabolism disease	GWASdb SNP-Disease Associations	1.0	0.396891
Taste bud	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.621
Taurine dioxygenase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.56
Planktonic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.722
cardiovascular system disease	GWASdb SNP-Disease Associations	1.0	0.133602
Glycolic acid	MW Enzyme Metabolite Associations	1.0	null
NEO1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.07556
3-isopropylmalate dehydratase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.816
Lung adenocarcinoma_LUAD_TCGA-69-8254-01A-11R-2287-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
glycolate metabolic process	GO Biological Process Annotations 2023	1.0	null
CRCGN016_MCF10A.TP53.M_24H:L11	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.44304
GSE248858_6_v_3_tcpobop_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
Lymphosarcoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.099
BRD-K22875057	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.36428
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-MA-AA41-01A-11R-A38B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-A06578049	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.32611
BRD-K29083370	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.12229
X-linked recessive disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.265
Blood serum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.256
PEG3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.46691
mantle zone of AStr	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.19902
parietal neocortex_8 pcw_M_13058	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.55017
Muscular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.151
VZ in ventromedial extrastriate cortex (VP)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.07412
Fra-1_KO_GDS5078_403_mouse_Lung	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
Yolk	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.64
FOXO1_KD_GDS2720_477_mouse_LSK	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
FMN-dependent dehydrogenase	InterPro Predicted Protein Domain Annotations	1.0	null
GSE160373_8_v_7_pparg_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
BRD-K03812127	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.95146
Microbody lumen	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.61
HOXB7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.7463
Pollen	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.679
Perturb_14813_KO_Septin2_SRP398422	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-20.0
Lung non-small cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.283
EW7	DepMap CRISPR Gene Dependency	1.0	2.62292
BRD-K28811650	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.93145
CRCGN015_MCF10A_48H:H22	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.53887
stratum pyramidale of caudal CA2	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.16152
AML193	DepMap CRISPR Gene Dependency	1.0	3.7471
BRD-K56912308	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.48158
Fruit capsule	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.969
CRCGN015_HEPG2_48H:M16	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	6.41157
gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.92291
BRD-K16496880	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.28645
BRD-K18211442	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.45597
IRF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.2639
H3K9ac_liver_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
RMUGS	CCLE Cell Line Gene Expression Profiles	1.0	1.49402
BRD-K84391462	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.22552
Microbody lumen	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
outer SZ in midlateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-2.1007
Eye Abnormalities	CTD Gene-Disease Associations	1.0	1.04538
E2F1_KD_GDS4094_446_mouse_Mammary tumors	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
BRD-K50716325	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.25134
intermediate stratum of r9Lim	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.10985
Vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.457
NR3C1-27076634-BEAS2B-HUMAN-LUNG-INFLAMMATION	ChEA Transcription Factor Targets 2022	1.0	null
Kidney renal papillary cell carcinoma_KIRP_TCGA-DZ-6134-11A-01R-1965-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE148066,GSE157787_8_v_6_n4bp1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Gingiva	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.126
BRD-K44950949	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.50414
primary somatosensory cortex (area S1, areas 3,1,2)_24 pcw_M_12288	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.23167
Periplasmic space	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.757
BRD-K15202679	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.07467
496100522_PCx_dementia_TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.3887
Female reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.577
Head capsule	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.802
GSE154464_0_v_2_cdk6_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PMC7488531-13287_2020_1914_MOESM10_ESM.xlsx-HNF4A_regulated_DEGs_750-Unnamed_1_HNF4A	Rummagene Transcription Factor Associations 2026	1.0	null
KU-7 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.611
Disease by infectious agent	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.056
DNA recombinase mediator complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.688
TestisGermCell	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-1.37309
glyoxysome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	2.01916
CRCGN017_MCF10A.WT.HP_24H:A21	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.3841
BRD-K59263278	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.34776
Dot1l_DELETION_GDS4295_426_mouse_AF9 - Mixed Lineage Leukemia (MLL) cells - 3 days	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
Pontine reticular nucleus, caudal part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.12632
GSE246195,GSE246305_1_v_0_sin3a_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
BRD-A68842442	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.1295
subpallial amygdala	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.0964
Central medial nucleus of the thalamus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.02513
Retrotransposon nucleocapsid	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.273
GATA3_SK-N-SH_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Skin cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.437
CRCGN015_MCF10A_48H:P06	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	6.45759
intermediate stratum of LAP	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.05256
DG-75	GDSC Cell Line Gene Expression Profiles	1.0	1.43805
GSE44157,GSE44163_3_v_0_nr6a1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
MAFF	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.60559
superficial stratum of r6BL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.16364
Rhomboid nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.01066
Liver hepatocellular carcinoma_LIHC_TCGA-EP-A26S-11A-12R-A16W-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Apoplast	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.814
Riboflavin synthase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.851
leaf	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.69749
BRD-K52231520	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.3712
Medial amygdalar nucleus, posterodorsal part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.08714
GSE166315_5_v_0_docetaxel_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
BRD-K79148949	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.2125
liminal periaqueductal gray of m2	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.55917
BRD-K81475473	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.00918
BRD-K13515483	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.0705
BRD-K60255752	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.51079
Endocrine gland cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.814
GSE199899_4_v_2_diethylnitrosamine_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
Plasma membrane-derived chromatophore	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.187
urine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.314409
Sieve cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.654
disease of metabolism	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.703134
LEO1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.43212
GSE160083,GSE160084_1_v_0_tamoxifen_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
bundle sheath	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.194
CRCGN014_HEPG2_24H:J15	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.66125
GSE133213_6_v_13_znrf3_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE138019_3_v_6_nudt12_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
BRD-K71817857	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.16614
Honey	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.286
BRD-K97741413	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.18618
GSE137954_4_v_2_smyd3_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Sarcosine oxidase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.738
Hypertension	CTD Gene-Disease Associations	1.0	1.17101
Biofilm	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.055
anterior (rostral) cingulate (medial prefrontal) cortex_24 pcw_M_12288	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.0763
PANC 08.13	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.7803
hsa-miR-181b	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
Cytochrome o ubiquinol oxidase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.87
Nitrate reductase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.254
PMC12172627-NIHMS2085635-supplement-5.xlsx-E2F1_GENIE_Results-Unnamed_1_E2F1	Rummagene Transcription Factor Associations 2026	1.0	null
PBX1	ChEA Transcription Factor Targets	1.0	null
a2780cis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.609
P300-18555785-CHIP-SEQ-ESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
BRD-K90040724	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.59646
Eccrine sweat gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.247
Fruit juice	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.016
U-87MG cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.463
CREB1-26743006-CHIP-SEQ-LNCAP-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
BRD-K03851221	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.14533
protein binding	GO Molecular Function Annotations 2015	1.0	null
ventrolateral prefrontal cortex_12 pcw_F_12835	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.883604
Monogenic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.789
WM983B	CCLE Cell Line Gene CNV Profiles	1.0	1.74465
Colon cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.474
BRD-A02927672	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.21021
craniofacial-deafness-hand syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.956
Superior colliculus, motor related, intermediate gray layer, sublayer a	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.35355
A-498	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.942866
inferolateral temporal cortex (area TEv, area 20)_24 pcw_M_12288	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.23167
GSE149075_1_v_4_foxa2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
endocrine gland	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
Primary hyperoxaluria	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.316
GSE136742,GSE136744_2_v_3_setd2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
BRD-K78658063	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.79391
mp88	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.631
reuniens nucleus, main part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.17615
BRD-K81758631	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.20156
A-Vietnam-1203-2004(H5N1)_7Hour_None_GSE43204	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-2.6043
FOXG1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.9355
nucleotide binding	GO Molecular Function Annotations 2015	1.0	null
all	GWASdb SNP-Phenotype Associations	1.0	0.039805
Pheochromocytoma and Paraganglioma_PCPG_TCGA-SQ-A6I4-01A-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Paragigantocellular reticular nucleus, lateral part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.16908
CRCGN014_HEPG2_24H:A03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.59346
VZ in dorsomedial frontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.836384
Biofilm matrix	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.424
Lateral reticular nucleus, magnocellular part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.10186
BRD-K07152092	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.35883
BRD-K74096348	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.01813
periventricular stratum of the VAP	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.05477
NCI-H1793	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.977286
Perturb_12887_KD_Setd2_SRP035252	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-20.0
GSE217405_0_v_2_egfr_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Wound fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.161
HDAC3_KO_GDS4886_29_mouse_heart - 6 week old	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
molecular_function	GO Molecular Function Annotations 2015	1.0	null
BRD-K70315531	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.31842
stoma	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.18201
NCIH292	CCLE Cell Line Gene CNV Profiles	-1.0	-1.90791
CRCGN015_MCF10A_48H:O11	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	7.5436
Calcium oxalate nephrolithiasis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.38
Catalase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.579
inhibitions	GeneRIF Biological Term Annotations	1.0	null
ESET_KO_GDS4508_348_mouse_Dorsal telencephalon from E14.5 embryos	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
oxidoreductase activity, acting on the aldehyde or oxo group of donors	GO Molecular Function Annotations 2015	1.0	null
ATP1B2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.26008
GSE133213_6_v_15_znrf3_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
(S)-2-hydroxy-acid oxidase activity	GO Molecular Function Annotations 2025	1.0	null
Medial geniculate nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.67
GSE182179_0_v_1_kdsr_human	RummaGEO Gene Perturbation Signatures	1.0	null
KMS-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.87527
Disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.753
BRD-K12683022	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.01242
GSE111247_0_v_7_temozolomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
NCI-H2291	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BRD-K40248932	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.40569
MDA-MB-175-VII	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.23552
Egg white	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.684
Tremor	DisGeNET Gene-Phenotype Associations	1.0	null
Nephritis	CTD Gene-Disease Associations	1.0	1.49787
BRD-K96839404	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.42756
OCI-AML5	COSMIC Cell Line Gene Mutation Profiles	1.0	null
membrane-bounded organelle	LOCATE Curated Protein Localization Annotations	1.0	null
BRD-K83708628	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.62854
GR-M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.949575
DICER1_KO_GDS4504_584_mouse_bone marrow granulocyte-macrophage progenitors	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
BRD-K33272704	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.64974
Peroxisome	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
Kidney Chromophobe_KICH_TCGA-KL-8326-11A-01R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K47854067	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.34216
DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.8766
Disease of cellular proliferation	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.604
PMC3500769-srep00875-s3.xls-AP1-Time_4_JUN	Rummagene Transcription Factor Associations 2026	1.0	null
DMS454	CCLE Cell Line Gene CNV Profiles	1.0	1.92025
Plant parenchyma	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.07
SK-BR-3 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.034
GSE210842_3_v_1_hnf4a_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
CRCGN008_HEPG2_24H:K05	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.33085
Coronavirus infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.726
hsa-miR-593	TargetScan Predicted Conserved microRNA Targets	1.0	0.283838
Liver hepatocellular carcinoma_LIHC_TCGA-DD-A3A1-11A-11R-A213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K43306617	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.62957
GSE132948,GSE132949_2_v_3_msi2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
BRD-K74677971	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.75946
Chloroplast membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.421
rostral periolivary nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.20949
hsa-miR-4753-3p	TargetScan Predicted Conserved microRNA Targets	1.0	0.283838
whole body	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
medial ganglionic eminence_9 pcw_M_12833	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.04333
membrane-enclosed lumen	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.112441
Nfatc1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	26.3652
glyoxylate metabolic process	GO Biological Process Annotations 2015	1.0	null
ISL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.2159
GSE138019_3_v_2_nudt12_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
caudal division of IPC (area 39)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.905242
GSE166315_5_v_4_docetaxel_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
CRCGN016_MCF10A.WT.HP_24H:P10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.78852
FGFR1_activemutant_58_GSE17916	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	1.0	1.62321
INA6	DepMap CRISPR Gene Dependency	1.0	2.96473
basomedial amygdaloid nucleus, posterior part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.11539
GSE248883_0_v_1_shmt2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PMC5577301-in-17-237-s001.xls-AR_downregulated_DEGs-Kidney_GDS724_GENE_AR	Rummagene Transcription Factor Associations 2026	1.0	null
CRCGN009_HEPG2_24H:L08	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.4363
NURR1	MotifMap Predicted Transcription Factor Targets	1.0	null
Malignant Neoplasm	DisGeNET Gene-Disease Associations	1.0	null
KNS81	DepMap CRISPR Gene Dependency	1.0	2.80256
Male reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.66
striatum_13 pcw_M_12888	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.0763
3-Decyl-2,5-Dioxo-4-Hydroxy-3-Pyrroline	DrugBank Drug Targets	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A2M5-06A-12R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC6167382-41467_2018_6258_MOESM4_ESM.xlsx-TEAD-associated_GSC-Specific_UP-Nearest_Ensembl_GSC	Rummagene Transcription Factor Associations 2026	1.0	null
CRCGN009_HEPG2_24H:G14	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.87505
BRD-K26351062	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.02883
PMC3500769-srep00875-s3.xls-GATA3-Time_0_GATA3	Rummagene Transcription Factor Associations 2026	1.0	null
BRD-K72296840	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.12727
hsa-miR-30e	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
GSE160373_6_v_4_pparg_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Six4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	21.5961
hsa-miR-3908	TargetScan Predicted Conserved microRNA Targets	1.0	0.766596
hsa-miR-491-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
Peroxisomal matrix	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
IGF1R_druginhibition_47_GSE14024	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	1.0	2.18758
choroid plexus of the fourth ventricle	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.49062
hsa-miR-4793-3p	TargetScan Predicted Conserved microRNA Targets	1.0	0.303626
Cus cation efflux complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.539
outer CP in caudal perirhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	2.35564
anterior (rostral) cingulate (medial prefrontal) cortex_8 pcw_M_13058	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.35263
Sarcoma_SARC_TCGA-X6-A8C3-01A-11R-A36F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE224556,GSE224557_8_v_1_aire_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
VPS11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.54107
SHSYSY-RA	BioGPS Cell Line Gene Expression Profiles	-1.0	-0.923368
Glyoxysome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.786
CDYL2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.05073
BRD-K69396470	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.54445
BRD-K68547601	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.37537
first	GeneRIF Biological Term Annotations	1.0	null
parasitic infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.175947
Nfat5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	35.6994
BRD-K96845170	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.276
Arteriosclerotic cardiovascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.332
BL6688 (ASH1L)	NURSA Protein Complexes	1.0	null
GSE132948,GSE132949_4_v_1_msi2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Glycine cleavage complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.645
GSE227592_9_v_3_adar_human	RummaGEO Gene Perturbation Signatures	-1.0	null
PMC8709578-elife-69843-supp2.xlsx-HSF1_KO_2_E2_1h-Nearest_Ensembl_HSF1	Rummagene Transcription Factor Associations 2026	1.0	null
BRD-K13673722	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.40377
DOK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.878505
Skin Cutaneous Melanoma_SKCM_TCGA-GF-A3OT-06A-23R-A239-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
OCT4-18555785-CHIP-SEQ-ESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
pallidal amygdala	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.25712
NR3C1	ChEA Transcription Factor Targets	1.0	null
COVID-19	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.713
Sox17	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	25.9136
primary auditory cortex (core)_24 pcw_M_12288	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.839636
Dlx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.8523
BRD-K23503923	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.08273
Cholera	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.025
BRD-K38273665	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.73873
COLO-684	GDSC Cell Line Gene Expression Profiles	1.0	3.02237
mammillary area	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.1542
BRD-K97938633	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.1748
microbody	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
GSE129389_0_v_1_tropifexor_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE158182_5_v_0_pnpla3_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE95685_2_v_0_tcpobop_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
CoPV part of the periaqueductal gray	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.13534
CEBPB	ENCODE Transcription Factor Targets	1.0	null
hsa-miR-4763-5p	TargetScan Predicted Conserved microRNA Targets	1.0	0.404082
PMC3500769-srep00875-s3.xls-CEBP-Time_0_CEBPA	Rummagene Transcription Factor Associations 2026	1.0	null
GSE202284,GSE202289_7_v_4_bmal1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
BRD-K26992703	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.89105
Male reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.666
root tip	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.326067
BRD-K21332842	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.06943
RAC1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.701
SK-MEL-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
FOXO1::ELF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.3649
Heart Defects, Congenital	CTD Gene-Disease Associations	1.0	1.16766
Liver	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
orbital frontal cortex_37 yrs_M_12303	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.883604
BRD-K42716291	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.36766
BRD-K37657049	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.15813
Phosphopantothenoylcysteine decarboxylase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.128
BRD-K42480393	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.05499
hippocampus (hippocampal formation)_19 pcw_F_12885	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.964424
Hepatobiliary disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.862
FOXF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.9512
786	BioGPS Cell Line Gene Expression Profiles	1.0	0.91127
NDUFV2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.73625
GP5D	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Acute Kidney Injury	CTD Gene-Disease Associations	1.0	1.56239
ZSCAN9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.80728
BC-3	GDSC Cell Line Gene Expression Profiles	1.0	1.60957
internal globus pallidus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.20844
gracile nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.08705
BRD-K54637865	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.75367
BRD-K78748401	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.31345
r3 part of basolateral reticular formation	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.15872
mantle zone of Mam	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.15337
BRD-K41287744	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.64135
inferior colliculus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.42258
cytoplasm	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
CRCGN015_MCF10A_48H:H24	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.29576
NCIH929	CCLE Cell Line Gene CNV Profiles	-1.0	-1.76023
granum	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.716346
BRD-K86935536	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.02421
PMC7397849-supp_gad.338681.120_Supplemental_Table_S3.xlsx-S3L_Peaks_2SA-YAP1_TEAD4-Unnamed_14_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
EGR1-23403033-LIVER-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
intracellular part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
intermediate stratum of r2BL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.08951
BRD-K14245433	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.69565
animal	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
PMC9068765-41467_2022_29960_MOESM14_ESM.xlsx-TP53-Annotation_TP53	Rummagene Transcription Factor Associations 2026	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-EJ-7125-01A-11R-1965-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ENTPD4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.85437
Tentacle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.726
PMC7397849-supp_gad.338681.120_Supplemental_Table_S3.xlsx-S3K_Peaks_wtYAP1_TEAD4-Unnamed_14_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
hsa-miR-30b	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.13535
Tadpole	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.92
SMARCA4-23332759-OLIGODENDROCYTES-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
Mood disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.179
Lung squamous cell carcinoma_LUSC_TCGA-34-8454-01A-11R-2326-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
16138077-Table3	GeneSigDB Published Gene Signatures	1.0	null
HOXA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.319
496100409_FWM_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.96249
CRCGN016_MCF10A.TP53.M_24H:L22	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.6501
BRD-K67022703	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.01464
Perturb_18149_KO_Ikbkb/Shp2_SRP285005	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-12.1476
cancer	GAD High Level Gene-Disease Associations	1.0	0.293278
4T1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.796
ZNF200	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.56968
Cleft Palate	CTD Gene-Disease Associations	1.0	1.02896
BRD-K85615919	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.27523
BRD-K26786741	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.06039
(s)-2-hydroxy-acid oxidase activity	GO Molecular Function Annotations 2015	1.0	null
BRD-K08966355	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.2188
Thylakoid membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.953
5-(dodecylthio)-1H-1,2,3-triazole-4-carboxylic acid	DrugBank Drug Targets	1.0	null
endosperm	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.16914
Plumule	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.33
striatum_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.997617
Epilepsy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.061
CRCGN015_MCF10A_48H:M07	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	6.66821
HCC4006	CCLE Cell Line Gene Expression Profiles	-1.0	-1.55626
H3K9me3_U2OS_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
GSE135400_1_v_0_kdm1b_human	RummaGEO Gene Perturbation Signatures	1.0	null
SKM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14332
HEC6	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33301
GSE122101,GSE122103_3_v_1_ssu72_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
NCVADR RES	BioGPS Cell Line Gene Expression Profiles	-1.0	-1.05262
Craniofacial Abnormalities	CTD Gene-Disease Associations	1.0	1.28765
mitochondria-associated endoplasmic reticulum membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.844
BRD-K00359952	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.79859
Nobox	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	14.9474
BRD4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.55349
Storage tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.741
Hyperglycemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.174
B800-850 antenna complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.944
Hematologic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.49
Cysteine synthase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.864
Cytochrome b6f complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.974
PA1	DepMap CRISPR Gene Dependency	1.0	2.56135
Superior olivary complex, medial part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.07768
BRD-K10923439	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.78799
BRD-K11641139	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.36881
4-aminobutyrate transaminase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.958
disease of anatomical entity	GWASdb SNP-Disease Associations	1.0	0.037882
KE39	CCLE Cell Line Gene CNV Profiles	1.0	1.9189
GSE138019_4_v_6_nudt12_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Digestive gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
MEIS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.6442
Copper ion transmembrane transporter complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.539
phenotypic abnormality	GWASdb SNP-Phenotype Associations	1.0	0.58876
496100321_HIP_no dementia_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.09881
PMC10539177-41375_2023_2003_MOESM2_ESM.xlsx-CCF-Gene_PITX1	Rummagene Transcription Factor Associations 2026	1.0	null
Secretory trichome	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.039
intracellular membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
GSE175787_11_v_0_rhoc_human	RummaGEO Gene Perturbation Signatures	-1.0	null
BRD-K82145108	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.18572
cd8.Tcell	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	0.943965
AR	ChEA Transcription Factor Targets	1.0	null
anterior amygdaloid area	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.03874
BRD-K51106788	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.63268
Diffuse idiopathic skeletal hyperostosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.338
BRD-K15508005	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.2873
laterorostral part of entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.33875
r6 part of ventral parvicellular reticular formation	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.00847
Intermediate reticular nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.03234
Plastid inner membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.011
BRD-K82883803	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.564
Perturb_11111_KO_Tsc1/Cpt2_SRP303636	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-20.0
Dmrt1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.7768
CRCGN015_MCF10A.WT.HP_24H:P17	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.5636
Tooth enamel	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.963
External plexiform layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.561
Liver Failure, Acute	CTD Gene-Disease Associations	1.0	1.19966
digestive gland	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
BRD-K94744294	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.40417
hsa-miR-576-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
Smoking status (heavy vs light)	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.752288
BRD-K16136457	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.01899
SKOV3	BioGPS Cell Line Gene Expression Profiles	1.0	1.26904
cellular metabolic process	GO Biological Process Annotations 2015	1.0	null
DICER1_KO_GDS4504_582_mouse_bone marrow granulocyte-macrophage progenitors	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
microbody	GO Cellular Component Annotations 2015	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-EJ-A46G-01A-31R-A26U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K46152990	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.2094
Perturb_11146_KO_3110043O21Rik_ERP013119	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	3.40629
rostral interstitial nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.88007
BRD-K01285236	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.20814
BRD-A68526335	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.26481
Brain cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.357
Breast carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.013
Arid3a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	24.6296
CRCGN017_MCF10A.TP53.M_24H:G11	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.00244
Uterine Cervical Neoplasms	CTD Gene-Disease Associations	1.0	1.11011
G361	CCLE Cell Line Gene Expression Profiles	-1.0	-2.33622
Retinal vascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.124
PMC7898758-40168_2020_994_MOESM4_ESM.xls-PRDM15_target_genes-Gene_PRDM15	Rummagene Transcription Factor Associations 2026	1.0	null
IZ in dorsomedial frontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.13346
Congenital Hyperinsulinism	DisGeNET Gene-Disease Associations	1.0	null
H3K4me1_A549_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
intermediate stratum of r9BL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.58413
GPI-PLD_OE_GDS2049_176_human_Hepatoma HepG2 cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
DUXA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.8717
Intestinal benign neoplasm	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.604
oxidoreductase activity, acting on ch-oh group of donors	GO Molecular Function Annotations 2015	1.0	null
BRD-K40282027	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.51582
GSE171292_5_v_2_ehhadh_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Brain Diseases	CTD Gene-Disease Associations	1.0	1.62401
HUPT4	DepMap CRISPR Gene Dependency	1.0	2.03489
BRD-K65875972	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.16359
intracellular organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.968401
20035825-TableS8a	GeneSigDB Published Gene Signatures	1.0	null
PMC7829553__F3	PFOCR Pathway Figure Associations 2024	1.0	null
CRCGN015_HEPG2_48H:K08	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.77368
BRD-K02688026	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.24814
acids	GeneRIF Biological Term Annotations	1.0	null
posteroventral (inferior) parietal cortex_13 pcw_M_12888	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.948743
HOP-62	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09047
VZ in caudal subicular cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.40611
SLR26	CCLE Cell Line Gene Expression Profiles	-1.0	-1.67415
SOCS3_DELETION_GDS1254_80_mouse_ES (embryonic stems cells)	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
peroxisomal part	GO Cellular Component Annotations 2015	1.0	null
Inferior olivary complex	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.2023
EP300	ENCODE Transcription Factor Targets	1.0	null
BRD-K91645615	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.31607
mantle zone of r8BL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.37928
KYSE-520	COSMIC Cell Line Gene CNV Profiles	1.0	2.93899
NCI-H2170	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.949575
NCI-H510A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.949575
BRD-K80290360	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.37169
carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05194
16424041-SuppTable1	GeneSigDB Published Gene Signatures	1.0	null
etioplast	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.320451
GSE92364_1_v_5_asparaginase_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
BRD-K60131990	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.11
FNIP-folliculin RagC/D GAP	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.573
PMC8844187-Table_2.xlsx-prostate-DLX1_DLX1	Rummagene Transcription Factor Associations 2026	1.0	null
BmN cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.569
type 2 diabetes mellitus	GWASdb SNP-Disease Associations	1.0	1.39396
gland	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
Urinary tract infection	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.049
hsa-miR-26a	TargetScan Predicted Conserved microRNA Targets	1.0	0.568687
TCF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.5203
8MGBA	CCLE Cell Line Gene Expression Profiles	-1.0	-3.92485
J-774 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.703
TEN	CCLE Cell Line Gene Expression Profiles	-1.0	-1.52302
HCC1569	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BRD-K74971765	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.06703
ONECUT1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.0233
BRD-K81160595	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.12871
retrotrapezoid nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.16405
intermediate stratum of PcPD	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.55963
periventricular stratum of TG	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.04651
AFF4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.34457
skeletal muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05484
Salivary gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.663
RL95-2	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Photosystem II	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.011
PMC5836443-12864_2018_4568_MOESM5_ESM.xlsx-Oxidation_of_Lipid_23_AR-DE_gen-Symbol_AR	Rummagene Transcription Factor Associations 2026	1.0	null
SW1990	COSMIC Cell Line Gene Mutation Profiles	1.0	null
light-harvesting complex, core complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.1
Style	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.163
microbody part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.12654
Carbon phosphorus lyase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.332
BRD-K98088240	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.25703
OLIG2-23332759-OLIGODENDROCYTES-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
Aflatoxin B1	CTD Gene-Chemical Interactions	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-VP-A87H-01A-11R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K39813155	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.39789
intermediate stratum of 5BL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.55079
Gustatory areas, layer 4	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.46993
Kidney renal papillary cell carcinoma_KIRP_TCGA-BQ-5891-11A-01R-1592-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
resembling	GeneRIF Biological Term Annotations	1.0	null
YY1	MotifMap Predicted Transcription Factor Targets	1.0	null
BRD-A42246453	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.00233
Renal Insufficiency	CTD Gene-Disease Associations	1.0	1.16104
BRD-K70936779	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.0127
BRD-K74968522	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.17754
Cervical spine	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.847
Primary somatosensory area, nose, layer 6a	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.35355
DU-145	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GSE174418,GSE174421_2_v_3_mettl5_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
BRD-K11487484	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.56105
Kidney Chromophobe_KICH_TCGA-KL-8332-11A-01R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
alcohol metabolic process	GO Biological Process Annotations 2015	1.0	null
Integumentary system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.437
membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.317082
intermediate stratum of r3BL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.15872
cytoplasmic part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.14392
Retinal pigment epithelium cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.948
CRCGN012_HEPG2_24H:G13	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.46375
Liver Neoplasms, Experimental	CTD Gene-Disease Associations	1.0	1.50599
GSE158182_4_v_0_pnpla3_human	RummaGEO Gene Perturbation Signatures	-1.0	null
ATP-independent citrate lyase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.689
Perturb_11141_KO_Hdac3/Scap_SRP082562	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-3.20655
small intestine	HPA Tissue Protein Expression Profiles	1.0	0.806843
Nephrocalcinosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.911
CRCGN011_HEPG2_24H:N02	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.33315
ZNF384	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	107.397
CRCGN017_MCF10A.TP53.M_24H:I10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.8002
BRD-K14570970	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.29536
BRD-K13849122	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.60214
BRD-K24081812	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.6617
PMC8709578-elife-69843-supp2.xlsx-HSF1_KO_2_Ctr-Gene_Name_HSF1	Rummagene Transcription Factor Associations 2026	1.0	null
RERFLCAD1	CCLE Cell Line Gene Expression Profiles	-1.0	-1.51303
NCI-H1573	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.56855
BRD-K11242872	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.18397
ZR7530	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.15445
root	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.289939
CTCF	ENCODE Transcription Factor Targets	1.0	null
TCCSUP	CCLE Cell Line Gene Expression Profiles	-1.0	-1.47168
Liver Cirrhosis, Experimental	CTD Gene-Disease Associations	1.0	1.10388
Liver cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.732
diabetes mellitus	GWASdb SNP-Disease Associations	1.0	0.432325
Melanoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.699
Microcephaly	CTD Gene-Disease Associations	1.0	1.18521
hsa-miR-181d	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
GSE138019_1_v_5_nudt12_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
upper limb region of M1	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.39518
BRD-K91897530	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.57513
HCC38	CCLE Cell Line Gene CNV Profiles	1.0	2.41298
BRD-K40367360	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.72989
H3K27me3_mononuclear cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RUNX1-21571218-MEGAKARYOCYTES-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
BRD-K47474571	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.0457
SK-NEP-1	GDSC Cell Line Gene Expression Profiles	1.0	1.53957
Kidney renal papillary cell carcinoma_KIRP_TCGA-BQ-7046-11A-01R-1965-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K37906761	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.02884
CRCGN015_MCF10A_48H:C21	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.01298
SW480	CCLE Cell Line Gene Expression Profiles	1.0	1.79803
organic acid metabolic process	GO Biological Process Annotations 2015	1.0	null
NCI-H1838	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.874509
BRD-A20208638	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.67691
95T1000	DepMap CRISPR Gene Dependency	1.0	2.42418
SHOX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8266
CRCGN015_MCF10A_48H:B10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	7.0978
Flower	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.367
Fetallung	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-0.839306
Urinary Bladder Neoplasms	CTD Gene-Disease Associations	1.0	1.08975
intracellular organelle lumen	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
RUNX1	ChEA Transcription Factor Targets	1.0	null
SKBR3	CCLE Cell Line Gene CNV Profiles	1.0	1.39028
Pancreatic adenocarcinoma_PAAD_TCGA-3A-A9IL-01A-11R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
P3HR1	CCLE Cell Line Gene Expression Profiles	1.0	1.7691
PMC7863452-12920_2021_883_MOESM2_ESM.xls-SRG_23_HCC_vs_17_NT-GENENAME_CASZ1	Rummagene Transcription Factor Associations 2026	1.0	null
NCIH446	DepMap CRISPR Gene Dependency	1.0	2.51309
NCI-H250	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Interanteromedial nucleus of the thalamus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.07172
NCI-H1355 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.505
PMC8410083-elife-65574-fig7-data1.xlsx-KLF10_network-Unnamed_25_KLF10	Rummagene Transcription Factor Associations 2026	1.0	null
Perturb_5922_KD_KHDRBS1_SRP271175	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.54012
sickle cell anemia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.404184
GSE158431_5_v_7_pioglitazone_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
BRD-K57343972	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.12528
Peritoneal dialysis fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.754
LN18	BioGPS Cell Line Gene Expression Profiles	-1.0	-0.977017
CRCGN015_HEPG2_48H:B21	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.12204
HNF1A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	85.5604
Skin disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.66
BRD-K82105033	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.3097
Gastrointestinal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.902
BRD-K28079391	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.41611
Tic complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.88
GSE241036_4_v_1_ethanol_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
KNS60	CCLE Cell Line Gene Expression Profiles	1.0	2.09034
Brain Lower Grade Glioma_LGG_TCGA-DU-A76R-01A-11R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PCDHB6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.17642
Chloroplast thylakoid membrane protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.362
HICS complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.031
intracellular organelle part	GO Cellular Component Annotations 2015	1.0	null
Cotton fibre	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.58
BRD-K89432538	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.37879
HS746T	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Hmx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.7001
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-4837-01A-01R-1305-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Tarsal bone	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.145
spectroscopic	GeneRIF Biological Term Annotations	1.0	null
monolayer-surrounded lipid storage body	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.286
GSE157609,GSE158123_0_v_1_ifi16_human	RummaGEO Gene Perturbation Signatures	-1.0	null
SH2D5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.6301
BRD-K03286808	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.11134
Brain Lower Grade Glioma_LGG_TCGA-FG-6688-01A-11R-1896-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K91885806	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.13368
BRD-K24170552	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.09958
A2058	GDSC Cell Line Gene Expression Profiles	-1.0	-1.57958
Papillary Carcinoma of the Thyroid_Thyroid Gland (MMHCC)_GSE3467	GEO Signatures of Differentially Expressed Genes for Diseases	1.0	1.65603
GSE158182_3_v_0_pnpla3_human	RummaGEO Gene Perturbation Signatures	-1.0	null
olivary pretectal nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.33069
HCC2998	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-33-4589-01A-01R-1443-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hippocampus (hippocampal formation)_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.94737
intracellular	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
single-organism metabolic process	GO Biological Process Annotations 2015	1.0	null
glycolate metabolic process	GO Biological Process Annotations 2015	1.0	null
GSE178227_1_v_2_tet1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
CRCGN017_MCF10A.TP53.M_24H:H08	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.28164
BRD-K34797601	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.42681
BRD-K28467941	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.90505
BRD-K98720112	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.75872
BRD-K14702616	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.36104
BRD-K19766710	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	5.12694
CAL-120	COSMIC Cell Line Gene Mutation Profiles	1.0	null
fatty acid catabolic process	GO Biological Process Annotations 2023	1.0	null
Respiratory system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.723
autosomal genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.044873
BRD-K84707727	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.67344
horsetail-astral microtubule array	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.602
MSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.1737
puberty and gonadal disorders	GWASdb SNP-Phenotype Associations	1.0	0.363613
BRD-K93176491	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.7766
GSE76771_1_v_3_atf4_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Perturb_15486_KD_SIM2_SRP218853	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.56631
Plasmodesma	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.062
SARS-CoV MA15_Day1-PFU-10^2_None_GSE33266	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.84789
CRCGN011_HEPG2_24H:C21	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.0143
Cytomegalovirus retinitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.103
KPL1	DepMap CRISPR Gene Dependency	1.0	11.9573
GATA2	ChEA Transcription Factor Targets	1.0	null
Vesicle lumen	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.78
Perturb_5954_KD_RBMX_SRP271175	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	3.9137
Lactic acidosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.049
Plastid stroma	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.497
ME-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.994757
BRD-K09663164	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.1525
PMC7793767-Table_2.docx-1-Downregulated_genes_in_the_pancreas_of_AA_vs_controls_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
Urinary system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.256
LHX5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.4664
Neoplasms, Experimental	CTD Gene-Disease Associations	1.0	1.0919
Digestive juice	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.963
HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.8718
Nucleus of the trapezoid body	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.52695
BRD-K89724519	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.15297
EGR1-23403033-LIVER-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
H3K9me3_HepG2_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
496100470_HIP_possible Alzheimer's disease_TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	14.1676
Prothylakoid	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.621
hypertension	GWASdb SNP-Disease Associations	1.0	0.499099
GSE123825_2_v_3_glutamine_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
lateral orbital frontal cortex (area 12/47)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.88105
VZ in caudal entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.981727
Chest wall lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.378
Hydronephrosis	CTD Gene-Disease Associations	1.0	1.08231
BRD-K63573625	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.09936
viscus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.97285
Fever	CTD Gene-Disease Associations	1.0	1.13279
Chloroplast inner membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.012
Pollen tube	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.978
Parasubiculum, layer 2	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.63484
Squamous cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.292
BRD-K91500340	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.57297
QT interval	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.552288
Type 2 diabetes mellitus	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.753
r9 part of the lateral reticular nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.47412
NCI-H1648	COSMIC Cell Line Gene Mutation Profiles	1.0	null
HNF1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	56.5748
heterocyclic compound binding	GO Molecular Function Annotations 2015	1.0	null
BRD-A21877498	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.36191
CRCGN015_MCF10A_48H:J23	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.32086
peroxisomal matrix	GO Cellular Component Annotations 2015	1.0	null
ISL1-30127528-BE2C-HUMAN-BRAIN-NEUROBLASTOMA	ChEA Transcription Factor Targets 2022	1.0	null
GSE239578_0_v_7_cxadr_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-60-2703-01A-11R-2045-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
FOXE1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	79.9017
plastid part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.382354
Necrosis	CTD Gene-Disease Associations	1.0	2.26041
BRD-K92446632	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.48928
BRD-K71345532	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.12421
BRD-K18197334	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.10307
Metabolism	Reactome Pathways 2014	1.0	null
FOXK2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.0164
CRCGN016_MCF10A.TP53.M_24H:K11	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.17569
HOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.9386
GSE183251_1_v_5_cyp2c70_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
organelle lumen	GO Cellular Component Annotations 2015	1.0	null
PMC8803621-mmc6.xlsx-Sup_Fig5A_genes_list-Genes_with_following_MEF2_motifs_around_their_TSS_CTAWWWATA_RSRFC4_Q2_MEF2_Q6_01_MEF2_03_MEF2_02_RSRFC4_Q2_from_GSEA_MEF2A	Rummagene Transcription Factor Associations 2026	1.0	null
parasitic protozoa infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.227642
PBX1-22567123-OVCAR3-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
been	GeneRIF Biological Term Annotations	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-DB-A64O-01A-11R-A29R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K83697352	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.69571
Brain Lower Grade Glioma_LGG_TCGA-QH-A6CX-01A-11R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MZ in medial temporal-occipital cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.832185
DASH complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.656
Perturb_10899_KD_Mdr2_SRP055450	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-2.80422
GSE201217_3_v_1_usf2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
KYSE-150	COSMIC Cell Line Gene Mutation Profiles	1.0	null
FEZ1	LINCS L1000 CMAP CRISPR Knockout Consensus Signatures	1.0	0.00453199
snoutepidermis	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-0.935978
Reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.782
JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.6488
ion binding	GO Molecular Function Annotations 2015	1.0	null
chago-k-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.380627
PANC0813	CCLE Cell Line Gene CNV Profiles	-1.0	-1.86127
GSE216538_1_v_4_mrs2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
BRD-K82064887	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.46376
rostral subdivision of paraventricular nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.00323
BRD-K50443235	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.11612
lung cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056561
plastid-encoded plastid RNA polymerase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.743
PMC3500769-srep00875-s3.xls-CEBP-Time_1_CEBPA	Rummagene Transcription Factor Associations 2026	1.0	null
Nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.186
Anterior ischemic optic neuropathy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.089
BRD-K54115231	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.01076
Granulation tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.217
CRCGN017_MCF10A.WT.HP_24H:O15	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.2107
BRD-K46239950	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.35772
Calyx	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.787
H zone	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.539
H3K9me3_H1	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
Plastid membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.619
HCC2935	DepMap CRISPR Gene Dependency	1.0	2.32854
Prostate adenocarcinoma_PRAD_TCGA-WW-A8ZI-01A-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K73562260	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.05937
HLF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.0127
peroxisome	GO Cellular Component Annotations 2023	1.0	null
Adventitious root	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.872
Liver Neoplasms	CTD Gene-Disease Associations	1.0	1.66403
BRD-K54686062	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.09131
BRD-K83751422	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	5.33405
BRD-K31233830	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.16597
GSE152050,GSE152052_1_v_0_arid1a_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
BRD-K42126874	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.62657
glyoxylate oxidase activity	GO Molecular Function Annotations 2015	1.0	null
PMC12756533-mmc1.pdf-20-SRF_SRF	Rummagene Transcription Factor Associations 2026	1.0	null
BRD-K69350885	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.38625
trunk	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052489
Brain Lower Grade Glioma_LGG_TCGA-HT-A74H-01A-11R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K70254692	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.34088
Plant candle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.947
BRD-K40228963	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.64021
RUNX1-17652178-JURKAT-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
BRD-K97707303	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.32266
PMC8104016-hcg-12-e002353-s006.xlsx-mTHP-1-LPS_Prom-Distal-RefSeq_Name_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
SZ in rostral cingulate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.74564
mantle zone of r7BL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.05969
Whole plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.679
BRD-K74694052	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.07561
PMC9794594-DataSheet_1.xlsx-ST12-Unnamed_6_KLF6	Rummagene Transcription Factor Associations 2026	1.0	null
H3K4me3_Pancreatic Islets	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
plant reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.5228
Dental plaque	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.953
Urolithiasis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.768
SARS-BatSRBD_Day2_None_GSE50000	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-2.25909
fatty acid metabolic process	GO Biological Process Annotations 2015	1.0	null
BRD-K28853245	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.10667
Intestinal disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.604
metabolic	GAD High Level Gene-Disease Associations	1.0	0.293278
BRD-K27616520	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.01023
GSE124471,GSE124488_1_v_0_lats1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-G3-A3CI-01A-11R-A213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
inferolateral temporal cortex (area TEv, area 20)_15 yrs_M_12299	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.974263
Glyoxylic acid	MW Enzyme Metabolite Associations	1.0	null
chloroplast outer membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.581758
SCLC21H	CCLE Cell Line Gene Expression Profiles	-1.0	-1.58022
SK-MEL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.977286
PANC0504	DepMap CRISPR Gene Dependency	1.0	2.00304
Liver hepatocellular carcinoma_LIHC_TCGA-ZP-A9D0-01A-11R-A37K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC3500769-srep00875-s3.xls-GATA3-Time_4_GATA3	Rummagene Transcription Factor Associations 2026	1.0	null
periventricular stratum of APal	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.51116
HUH1	CCLE Cell Line Gene Expression Profiles	1.0	3.40802
muscular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05267
BRD-K35122752	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.13461
CEBPD	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.0526
ventral posterior parvicellular nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.02513
Venous blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.246
GSE202434,GSE202438_2_v_1_talazoparib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
BRD-K92655427	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.10376
GSE183251_4_v_6_cyp2c70_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
HT-1376	COSMIC Cell Line Gene Mutation Profiles	1.0	null
catalytic complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.04561
peroxisomal matrix	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
ARGFX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.7113
CREB1-26743006-CHIP-SEQ-LNCAP-ABL-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
r8 part of lateral reticular nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.52337
organic substance metabolic process	GO Biological Process Annotations 2015	1.0	null
intracellular organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
Cervix disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.181
Osteoclastoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.115
FOXP3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.6062
MYC-20876797-MEDULLOBLASTOMA-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Bronchial disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.089
amygdaloid complex_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.73295
MCF12A	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.09247
NCIH2291	CCLE Cell Line Gene CNV Profiles	-1.0	-2.2942
DICER1_KO_GDS4504_583_mouse_bone marrow granulocyte-macrophage progenitors	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
dorsofrontal pretectal nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.55963
hepatocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.265038
BRD-K63761383	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.13351
receptor binding	GO Molecular Function Annotations 2015	1.0	null
ETV5::HOXA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.2698
STAT3-18555785-CHIP-SEQ-ESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
dorsal raphe nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.34856
A-Vietnam-1203_CIP048_RG4-2004(H5N1)NS1trunc124_4day-MOI-10^3_None_GSE44445	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.43919
Inflorescence	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.37
CRCGN015_HEPG2_48H:M07	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	6.21302
PMC8202205-NIHMS1706275-supplement-Table_S1.xlsx-Mesend_D2_GATA6-dependent-SYMBOL_GATA6	Rummagene Transcription Factor Associations 2026	1.0	null
BRD-K94803981	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.33645
Microbody	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.373
Kidney Neoplasms	CTD Gene-Disease Associations	1.0	1.28027
THP-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.46204
GSE92364_0_v_5_asparaginase_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
BRD-K76738405	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.01522
BRD-K04371719	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.20744
hippocampus (hippocampal formation)_12 pcw_F_12835	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.860505
H2AFZ_keratinocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CRCGN015_MCF10A_48H:C22	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.82081
GSE229468,GSE229471_2_v_3_znf587_human	RummaGEO Gene Perturbation Signatures	-1.0	null
ADNP_Deficiency - NULL MUTATION_GDS2540_691_mouse_E9 embryos - Heterozygous mutant	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
metabolic process	GO Biological Process Annotations 2015	1.0	null
PMC5519008__F2	PFOCR Pathway Figure Associations 2024	1.0	null
estradiol-5905	CMAP Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
Plant embryo	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.33
BRD-K88625883	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.52198
GSE117042_1_v_3_tunicamycin_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
Gout	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.277
Gastrointestinal system benign neoplasm	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.604
BRD-K60216304	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.72305
Connective tissue disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.821
Perturb_11852_OE_Ccne1_SRP185695	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-2.60356
periventricular stratum of CoPV	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.13534
membrane-bounded organelle	GO Cellular Component Annotations 2015	1.0	null
NCIH226	CCLE Cell Line Gene CNV Profiles	-1.0	-1.54941
layer IIIb of caudal entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.864875
BRD-K42679620	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.13769
GSE224599_0_v_1_tfcp2_human	RummaGEO Gene Perturbation Signatures	1.0	null
BRD-K83297764	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.62883
HSG	BioGPS Cell Line Gene Expression Profiles	-1.0	-0.908388
BRD-K61520618	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	5.01596
medioventral part of putamen	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.66003
Peroxisomal matrix	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.612
CRCGN017_MCF10A.TP53.M_24H:A03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.0028
Chloroplast thylakoid membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.376
Hypertrophy	CTD Gene-Disease Associations	1.0	1.98974
Clathrin coat of trans-Golgi network vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.725
Dlx4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.2426
salivarygland	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	0.857571
T47D	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.560768
BRD-K83619973	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.17324
Perturb_14805_KO_Septin2_SRP398422	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-20.0
oxidoreductase activity, acting on the ch-oh group of donors, oxygen as acceptor	GO Molecular Function Annotations 2015	1.0	null
cellular lipid metabolic process	GO Biological Process Annotations 2015	1.0	null
cellular catabolic process	GO Biological Process Annotations 2015	1.0	null
lung cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058402
Mouth disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.488
BRD-K07348252	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.77084
corolla	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.462239
BRD-K03154735	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.51963
BRD-K86845618	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.38952
BRD-K07365255	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.35165
GSE110341_1_v_0_lmna_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
18427120-DataS4	GeneSigDB Published Gene Signatures	1.0	null
GSE217115_2_v_0_alectinib_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
Atherosclerosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.332
Radial spoke	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.804
lipid catabolic process	GO Biological Process Annotations 2015	1.0	null
BRD-K61441533	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.10134
medial amygdala, posterodorsal part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.34418
Coronary artery disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.637
Leaf disc	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.327
TBY-2 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.676
MCC13	COSMIC Cell Line Gene Mutation Profiles	1.0	null
cytoplasmic part	LOCATE Curated Protein Localization Annotations	1.0	null
Respiratory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.901
Eye disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.822
lipid metabolism disorder	GWASdb SNP-Disease Associations	1.0	0.700665
serine-pyruvate aminotransferase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.083
caudal portion of VFC (area 44)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.38598
viscus	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
BRD-K05939258	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.66809
Acute myocardial infarction	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.149
ERF::FOXO1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.7641
SRF	JASPAR Predicted Transcription Factor Targets	1.0	null
E2F1-18555785-CHIP-SEQ-ESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
BRD-K94936556	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.09115
intermediate stratum of r7BL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.20314
Amino acid metabolic disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.078
PMC6932815-ppat.1007634.s015.xlsx-ST5_DGE_ELF1-R8AvIFN48-mock_lfc-external_gene_name_ELF1	Rummagene Transcription Factor Associations 2026	1.0	null
superficial stratum of THyB-I	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.68956
BRD-K84541452	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.64466
BRD-K12281552	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.33121
plumule	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.694
Rheumatoid arthritis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.099
dorsolateral TG part of the periaqueductal gray	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.04651
P53-22127205-FIBROBLAST-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
plant form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.7149
Stigma	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.186
long-chain-(s)-2-hydroxy-long-chain-acid oxidase activity	GO Molecular Function Annotations 2015	1.0	null
PMC8202205-NIHMS1706275-supplement-Table_S1.xlsx-Mesend_D2_GATA6-dependent-ENSEMBL_GATA6	Rummagene Transcription Factor Associations 2026	1.0	null
BRD-K38084509	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.36384
Magnetosome lumen	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.947
BRD-K07431402	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.33998
nih 3T3	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	1.20494
loop	GeneRIF Biological Term Annotations	1.0	null
tanespimycin-381	CMAP Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
breast cancer	GWASdb SNP-Disease Associations	1.0	1.06275
mature cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.50942
Heart disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.614
glycolate oxidase activity	GO Molecular Function Annotations 2015	1.0	null
BRD-K48195722	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.21228
Ribulose bisphosphate carboxylase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.812
CRCGN013_HEPG2_24H:C21	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.80685
Myocardial infarction	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.583
BRD-K43834805	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.66932
BRD-K78249980	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.04288
Brain Lower Grade Glioma_LGG_TCGA-HT-8110-01A-11R-2404-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Mitochondrial inner membrane peptidase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.0
Lung Diseases	CTD Gene-Disease Associations	1.0	1.06188
GSE129370_0_v_1_ethanol_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
mantle zone of r10Lim	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.18244
Mesophyll cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.651
reticulotegmental nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.967065
FOXP4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.997
Age related macular degeneration	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.202
LHX9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.6593
single-organism cellular process	GO Biological Process Annotations 2015	1.0	null
Magnetosome membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.181
GSE169697,GSE169725_0_v_4_prrx1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
BRD-K16838444	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.68738
BRD-K58843485	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.45919
Liver hepatocellular carcinoma_LIHC_TCGA-DD-A3A2-11A-11R-A213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hsa-miR-4307	TargetScan Predicted Conserved microRNA Targets	1.0	0.336728
glyoxylate and dicarboxylate metabolism	KEGG Pathways	1.0	null
ML-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.40051
hsa-miR-548b-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
GSE166004_3_v_2_pld1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Kidney Diseases	CTD Gene-Disease Associations	1.0	1.48582
JHOM2B	CCLE Cell Line Gene Expression Profiles	-1.0	-2.51713
BRD-K57059449	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.41415
CRCGN015_MCF10A_48H:J24	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.9233
Kidney renal papillary cell carcinoma_KIRP_TCGA-BQ-5894-11A-01R-1592-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
FOXC1	JASPAR Predicted Transcription Factor Targets	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-MR-A520-01A-11R-A266-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K44492160	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.37635
HCC4006	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.942827
inherited metabolic disorder	GWASdb SNP-Disease Associations	1.0	0.18489
BRD-K39516553	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.51748
Skin cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.714
BRD-K73427605	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.79791
ETV5::FOXO1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.1116
BRD-K68160857	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.28772
A253	GDSC Cell Line Gene Expression Profiles	-1.0	-2.81772
NCI-H1770	GDSC Cell Line Gene Expression Profiles	1.0	1.74948
Spike	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.679
mammillary part of THyB	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.15461
medial vestibular nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.49851
Asthma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.025
peroxisomal matrix	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.944956
cellular_component	GO Cellular Component Annotations 2015	1.0	null
Vascular bundle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.632
PSII associated light-harvesting complex II	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.31
metabolic acidosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.259124
KYSE520	CCLE Cell Line Gene CNV Profiles	1.0	1.7764
G59	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.05002
BRD-K52414345	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.63453
MX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.89204
BXPC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.52743
GSE111247_0_v_8_temozolomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Kidney renal papillary cell carcinoma_KIRP_TCGA-BQ-5877-11A-01R-1592-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Cognition Disorders	CTD Gene-Disease Associations	1.0	1.32756
N-Sulfo-Flavin Mononucleotide	DrugBank Drug Targets	1.0	null
r9 part of trigeminal transition zone	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.92698
Lymphnode	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-0.85239
NCI-H2030	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20214
Plasma membrane light-harvesting complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.224
GSE185944_2_v_1_pth1r_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
AM-38	COSMIC Cell Line Gene Mutation Profiles	1.0	null
mantle zone of r5BL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.13203
ribonucleotide binding	GO Molecular Function Annotations 2015	1.0	null
CRCGN015_MCF10A.WT.HP_24H:M16	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	7.5264
CRCGN008_HEPG2_24H:M17	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.236
Weight Gain	CTD Gene-Disease Associations	1.0	1.40345
Formate dehydrogenase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.56
Peroxisome	KEGG Pathways 2026	1.0	null
RPRML	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.50076
H3K4me2_endothelial cell of umbilical vein_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
HCC1588	CCLE Cell Line Gene Expression Profiles	-1.0	-2.26265
BRD-K17536501	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.58421
biological_process	GO Biological Process Annotations 2015	1.0	null
CHAGOK1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.62262
UM-UC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.875658
multiform (lateral) division of MD	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.20536
C4orf46	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.47123
JHOS4	CCLE Cell Line Gene CNV Profiles	1.0	1.49419
GSE157594_6_v_2_nicotinamide_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
liminal nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.6446
binding	GO Molecular Function Annotations 2015	1.0	null
PAX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.0355
CRCGN015_MCF10A_48H:H23	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.40212
MAFF	ENCODE Transcription Factor Targets	1.0	null
CRCGN015_MCF10A_48H:C20	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.71409
monocarboxylic acid catabolic process	GO Biological Process Annotations 2015	1.0	null
CTBP1-25329375-LNCAP-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
MAN2C1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.49433
EZH2_keratinocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
DLX5_KO_GSE22381_5_mouse_ear (otic vesicle)	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
FOXC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	50.8375
Bone marrow-derived dendritic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.797
Stromule	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.879
GSE148066,GSE157787_5_v_6_n4bp1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.961187
CRCGN014_HEPG2_24H:D07	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.3536
BRD-K99000702	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.65817
plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.68852
stem	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.071266
intermediate stratum of r1BI	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.17783
Perturb_11107_KO_Cpt2_SRP303636	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-20.0
superficial stratum of PCPD	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.00351
SU-DHL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.01201
FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.399
SCA1_Knock-in_GDS1756_231_mouse_Cerebellum tissue - 4 weeks of age	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
PRKCI	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.79979
Muscle tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.113
CRCGN015_HEPG2_48H:G15	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	6.0511
dorsolateral prefrontal cortex_12 pcw_F_12835	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.932317
BRD-K72261386	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.26097
ZNF680	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.9697
BRD-K36111748	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.55934
GSE140651,GSE140653_2_v_1_med1_human	RummaGEO Gene Perturbation Signatures	1.0	null
CCRF-CEM cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.005
Juice	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.972
GSE200352_10_v_6_pparg_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
(S)-2-hydroxy-acid oxidase activity	GO Molecular Function Annotations 2023	1.0	null
CJUN-26792858-CHIP-SEQ-BT549-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
CPSF6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.39563
liver	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	2.09859
Brain disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.811
GSE202434,GSE202438_2_v_14_talazoparib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Brain cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.883
TLX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.9768
Intrinsic component of organelle membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.16
peroxisome	LOCATE Curated Protein Localization Annotations	1.0	null
GSE214161,GSE214233_0_v_2_zmym2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
endocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.843706
NR4A2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.3826
ZNF582	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	62.6587
ABC1	CCLE Cell Line Gene CNV Profiles	1.0	1.62611
GSE237040_6_v_1_notch3_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
MNX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.5848
RCC10RGB	DepMap CRISPR Gene Dependency	1.0	2.20414
organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
GSE132948,GSE132949_0_v_3_msi2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GSE210655_1_v_4_cisplatin_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
BRD-K78245984	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.17673
hypolipidemia	GWASdb SNP-Phenotype Associations	1.0	0.93106
microbody lumen	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
BRD-K69238239	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.36829
outer SZ in orbital frontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.883679
BRD-K90686617	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.60988
Alzheimer's disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.602
Cuboid bone	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.387
BRD-K18178356	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.46386
BRD-K03715233	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.64993
GSE218879_1_v_0_acetaminophen_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
HCC1319	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02939
BRD-K09777330	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.25804
CTNNB_Activation (deltaNB-cateninER transgenics)_GDS1560_767_mouse_Skin - 1 Day	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
Benign neoplasm	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.604
BRD-K62624148	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.68548
BRD-K61439332	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.61037
BRD-K77609086	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.14696
CRCGN016_MCF10A.TP53.M_24H:H08	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.87775
NIHOVCAR3	CCLE Cell Line Gene CNV Profiles	1.0	1.35688
Adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.269
plastid	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.12194
TestisSeminiferousTubule	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-0.85239
TBX2-30127528-BE2C-HUMAN-BRAIN-NEUROBLASTOMA	ChEA Transcription Factor Targets 2022	1.0	null
BRD-K85668200	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.21488
BRD-K81952048	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.17122
BRD-K69594935	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.89228
PMC3500769-srep00875-s3.xls-PAX2-Time_24_PAX2	Rummagene Transcription Factor Associations 2026	1.0	null
Plastid nucleoid	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.705
hsa-miR-3653	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
HCC1493	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.63507
microbody	LOCATE Curated Protein Localization Annotations	1.0	null
oxidative	GeneRIF Biological Term Annotations	1.0	null
GSE155031_5_v_3_dextran_human	RummaGEO Drug Perturbation Signatures	1.0	null
SLAC complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.751
Lung adenocarcinoma_LUAD_TCGA-93-8067-01A-11R-2287-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE210655_1_v_2_cisplatin_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-EJ-7312-01B-21R-A32O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MZ in dorsomedial extrastriate cortex (V2)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.10886
HCC44	DepMap CRISPR Gene Dependency	1.0	2.05014
BRD-K74537725	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.13249
AR-20517297-VCAP-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
viscus	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
HCC3153	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.04244
Hmx2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	33.2934
BRD-K52354895	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.4745
Meniscus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.935
Rge	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.75
Schizophrenia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.041
BRD-K46726368	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.22616
MAFF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.8808
Liver Cirrhosis, Experimental	DisGeNET Gene-Disease Associations	1.0	null
BRD-K47599758	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.32656
TCF7L2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.4904
microbody lumen	GO Cellular Component Annotations 2023	1.0	null
integument	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.050549
BRD-K96054771	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.35302
PAT complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.309
hsa-miR-4728-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
whole body	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
Parafascicular nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.03393
JUN-26020271-SMOOTH-MUSCLE-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
BRD-K25284184	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.57055
Mesophyll	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.786
BRD-K20470077	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.83889
GSE129389_0_v_7_tropifexor_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
intermediate stratum of r4BL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.23993
BRD-K10900122	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.9658
GATA3	ENCODE Transcription Factor Targets	1.0	null
Drug-Related Side Effects and Adverse Reactions	CTD Gene-Disease Associations	1.0	1.46807
A-431	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02232
plant-type vacuole membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.161
vascular disease	GWASdb SNP-Disease Associations	1.0	0.182924
TCF4-22108803-LS180-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Neuro D	MotifMap Predicted Transcription Factor Targets	1.0	null
Hemorrhage	CTD Gene-Disease Associations	1.0	1.62401
hsa-miR-30d	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
PEX5	Pathway Commons Protein-Protein Interactions	1.0	null
BRD-K74701308	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	5.43321
NCI-H1838	COSMIC Cell Line Gene Mutation Profiles	1.0	null
nephrolithiasis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.39214
HDAC3_KO_GDS4886_66_mouse_Heart	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
ATM_knockout_75_GSE23116	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	-1.0	-1.72313
SNU-C2B	GDSC Cell Line Gene Expression Profiles	1.0	1.69388
chloroplast part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.508383
16728581-SuppTable1	GeneSigDB Published Gene Signatures	1.0	null
Phloem	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.539
Number of decayed, missing and filled tooth surfaces or use of dentures	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.81549
Medial amygdalar nucleus, posterodorsal part, sublayer c	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.89856
SHOX	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.02157
inhibitor	GeneRIF Biological Term Annotations	1.0	null
Atopic dermatitis 3	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.517
CEBPA-20513432-MACROPHAGES-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
Kidney renal papillary cell carcinoma_KIRP_TCGA-BQ-7051-11A-02R-1965-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K79619334	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.32135
PMC8709578-elife-69843-supp2.xlsx-MIX_Ctr-Gene_Name_MIXL1	Rummagene Transcription Factor Associations 2026	1.0	null
CRCGN015_MCF10A_48H:G14	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.6143
Primary Hyperoxaluria	DisGeNET Gene-Disease Associations	1.0	null
BRD-K89264608	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.38289
CRCGN015_HEPG2_48H:P06	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.78604
Systemic lupus erythematosus	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.569897
H3K9me3_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
HAND2-30127528-KELLY-HUMAN-BRAIN-NEUROBLASTOMA	ChEA Transcription Factor Targets 2022	1.0	null
monogenic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.044107
caudal ganglionic eminence_8 pcw_M_13058	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.839636
CRCGN015_MCF10A_48H:P19	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.28359
PMC6151487__F5	PFOCR Pathway Figure Associations 2024	1.0	null
magnocellular interstitial nucleus of the posterior commissure	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.15665
primary motor cortex (area M1, area 4)_21 pcw_F_12365	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.31702
Seizures	CTD Gene-Disease Associations	1.0	1.20558
BRD-K16733272	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.63842
BRD-K06157545	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.64311
lateral part of r10B	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.16824
BRD-K80044183	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.25361
PMC8410083-elife-65574-fig7-data1.xlsx-KLF10_network-Genes_bound_by_KLF10_in_their_-10_1kb_region_or_differentially_expressed_in_WT_vs_HepKO_hepatocytes_challenged_with_high_sugar_KLF10	Rummagene Transcription Factor Associations 2026	1.0	null
endocrine gland	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
BRD-K06403738	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.19402
KURAMOCHI	COSMIC Cell Line Gene Mutation Profiles	1.0	null
gl1	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.506
Secondary cell wall	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.187
POLR2A	ENCODE Transcription Factor Targets	1.0	null
Peroxisomal protein import	Reactome Pathways 2024	1.0	null
hsa-miR-641	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
AK3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.48473
Intercalated nucleus of amygdala	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.903035
brain disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.068885
Fiber	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.385
refsum disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.879424
primary auditory cortex (core)_8 yrs_M_12841	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.25889
SNU216	CCLE Cell Line Gene CNV Profiles	1.0	2.4616
BRD-K22718400	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.48561
intermediate stratum of r10BL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.16824
catalysis	GeneRIF Biological Term Annotations	1.0	null
FOXA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.806
small molecule catabolic process	GO Biological Process Annotations 2015	1.0	null
liver	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
TCF3/E2A-22897851-JUKARTE6-1-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
GSE246195,GSE246305_4_v_5_sin3a_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
BRD-K91588908	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.21519
GSE188870,GSE188871_4_v_2_kat7_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
BRD-K74870161	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.5286
Photosystem II oxygen evolving complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.66
hsa-miR-3620	TargetScan Predicted Conserved microRNA Targets	1.0	0.257113
dorsal thalamus_12 pcw_F_12960	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.04967
BRD-K18070214	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.79815
CRCGN017_MCF10A.TP53.M_24H:H07	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	6.2949
hsa-miR-4744	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
Glioblastoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.524
CRCGN014_HEPG2_3H:H09	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.6462
Orbital area, medial part, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.10308
Astrocytoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.387
cellular_component	LOCATE Curated Protein Localization Annotations	1.0	null
BRD-A12725272	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.46132
periventricular stratum of DTTh	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.35355
seed	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.73628
GSE216538_0_v_4_mrs2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
cotyledon	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	2.01825
ventrolateral prefrontal cortex_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.02225
CRCGN017_MCF10A.TP53.M_24H:L22	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.83519
OLIG2-23332759-OLIGODENDROCYTES-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
inclusion body	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.09046
CRCGN015_MCF10A_48H:G13	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.12845
BRD-K88080911	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.78388
Vegetative stage	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.674
H3K4me2_A549_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
SK23	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04603
inner CP in temporal polar cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.976626
Autosomal dominant disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.528
Corn silk	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.229
Superior colliculus, motor related, intermediate gray layer, sublayer c	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.01595
mantle zone of APal	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.25712
CRCGN017_MCF10A.WT.HP_24H:N02	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.5673
Oxidoreductase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.608
BRD-K90138084	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.63967
dorsolateral prefrontal cortex_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.24565
carboxylic acid catabolic process	GO Biological Process Annotations 2015	1.0	null
RAX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.4958
ETS2	MotifMap Predicted Transcription Factor Targets	1.0	null
Autosomal genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.77
HCC38	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.905161
MPP-89	COSMIC Cell Line Gene Mutation Profiles	1.0	null
PRDM1	JASPAR Predicted Transcription Factor Targets	1.0	null
GSE239578_0_v_6_cxadr_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
EBF1-22473956-LYMPHODE-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
Hemolymph	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.204
EN1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.7787
Retrosplenial area, ventral part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.06527
Mite infestation	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.047
BRD-K64953645	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.14944
retrohypothalamic nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.10577
NEUROG2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.5012
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
BRD-K46001734	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.18888
GATA2-21666600-HMVEC-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
BRD-K05753543	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.10973
BRD-K49995660	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.21947
Kidney renal papillary cell carcinoma_KIRP_TCGA-BQ-5879-11A-01R-1592-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hsa-miR-369-3p	TargetScan Predicted Conserved microRNA Targets	1.0	0.670641
BRD-K53192330	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.235
Silique	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.974
Kidney failure	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.817
Gustatory areas, layer 6b	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.14848
abnormality of the endocrine system	GWASdb SNP-Phenotype Associations	1.0	0.1044
BRD-K60543885	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.14492
BRD-K53489056	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.22922
CRCGN015_HEPG2_48H:G01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	8.6043
BRD-K70428675	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.08712
GSE217982,GSE217983_2_v_3_hgfac_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE241036_0_v_3_ethanol_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
lipid modification	GO Biological Process Annotations 2015	1.0	null
Retinitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.042
Glyoxylate metabolism	Reactome Pathways 2014	1.0	null
Peripheral nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.556
implicated	GeneRIF Biological Term Annotations	1.0	null
Perturb_15133_OE_Klf10_SRP360603	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-20.0
superficial stratum of r1Tr	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.34199
Traumatic brain injury	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.111
ERF::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.2335
plastid membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.218914
YMB-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.942866
adrenoleukodystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.855268
ZNF622_02_108	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	4.75489
NCIH1836	DepMap CRISPR Gene Dependency	1.0	8.91069
BRD-K63401627	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.29445
amygdaloid complex_24 pcw_M_12288	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.10595
BRD-K02809100	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.92186
CRCGN015_MCF10A.WT.HP_24H:J10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.3532
GSE76425_0_v_12_lenalidomide_human	RummaGEO Drug Perturbation Signatures	1.0	null
Mental Disorders	CTD Gene-Disease Associations	1.0	1.05573
Lung squamous cell carcinoma_LUSC_TCGA-77-A5G7-01B-11R-A27Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCI-H292	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.46204
BRD-K86155080	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.97058
BRD-K66282601	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.12361
BRD-K71615409	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.87062
Inflammation	CTD Gene-Disease Associations	1.0	1.62624
Perturb_5933_KD_MRTO4_SRP271175	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.20187
ZNF157	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.9422
ESRRB-18555785-CHIP-SEQ-ESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
BRD-K82877426	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.92203
intracellular membrane-bounded organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
Breast Neoplasms	CTD Gene-Disease Associations	1.0	1.22306
PMC5836443-12864_2018_4568_MOESM5_ESM.xlsx-Flavoproteins_19_AR-DE_genes-Symbol_AR	Rummagene Transcription Factor Associations 2026	1.0	null
fruit	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.523588
liver	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.06779
Peritrophic membrane	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.591
glutamate-cysteine ligase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.832
rostral presubiculum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.06873
Glucose metabolism disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.712
GSE138019_1_v_2_nudt12_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Nkx3-2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	31.5481
SNU601	CCLE Cell Line Gene Expression Profiles	-1.0	-1.81347
(2S)-2-HYDROXYOCTANOIC ACID	DrugBank Drug Targets	1.0	null
BBS7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.79642
thyroid	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	1.4677
S-117	COSMIC Cell Line Gene Mutation Profiles	1.0	null
SuperiorCervicalGanglion	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	1.31354
NCI-H1155	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Prostate cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.666
FLI1::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.1434
Rosette	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.212
HOXC8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.5607
GSE100102_0_v_3_cgas_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
organic acid catabolic process	GO Biological Process Annotations 2015	1.0	null
YY1-22570637-MALME-3M-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
glycolate metabolic process	GO Biological Process Annotations 2025	1.0	null
EMX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.1875
A-Vietnam-1203_CIP048_RG4-2004(H5N1)PB2-627E_4day-MOI-10^4_None_GSE43301	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.87024
GATA2	JASPAR Predicted Transcription Factor Targets	1.0	null
GSE158182_4_v_7_pnpla3_human	RummaGEO Gene Perturbation Signatures	-1.0	null
membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.04481
BRD-K35520972	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.03139
pancreas	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	1.04589
BRD-K35209334	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.26796
hsa-miR-1197	TargetScan Predicted Conserved microRNA Targets	1.0	0.997906
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-VS-A954-01A-11R-A38B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Outer mitochondrial membrane protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.251
hsa-miR-26b	TargetScan Predicted Conserved microRNA Targets	1.0	0.541706
Ebola hemorrhagic fever	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.25
primary somatosensory cortex (area S1, areas 3,1,2)_21 pcw_F_12365	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.906439
ZNF547	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.0549
GSE220520_3_v_4_ethanol_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
BRD-K13309514	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.57339
MRPS2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.63443
BRD-K64553072	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.15952
CRCGN015_HEPG2_48H:O11	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.63133
BRD-K51697315	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.65829
BRD-A98208100	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.56812
alcohol catabolic process	GO Biological Process Annotations 2015	1.0	null
GSE237040_2_v_1_notch3_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
CRCGN015_MCF10A_48H:O10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	7.00435
Dental caries	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.421
GSE238018_3_v_5_mxra8_human	RummaGEO Gene Perturbation Signatures	-1.0	null
r9 part of dorsal parvicellular reticular formation	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.56232
Type 1 diabetes mellitus	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.292
spinal (inferior) vestibular nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.905672
BRD-K20171002	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.79581
Autosomal recessive disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.58
intercalated amygdaloid nuclei	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.5772
BHLHE23	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.9126
Needle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.135
membrane-enclosed lumen	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
PMC11711664-41598_2025_85366_MOESM6_ESM.xlsx-AA-METABOLIC_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
periventricular stratum of p1Lim	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.71377
GSE202434,GSE202438_12_v_5_talazoparib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
lateral part of r5B	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.13163
BRD-K10459843	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.14232
BRD-K47415214	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.34038
LU-65	GDSC Cell Line Gene Expression Profiles	1.0	1.60022
primary metabolic process	GO Biological Process Annotations 2015	1.0	null
BRD-K14211116	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.48899
GSE123825_2_v_3_glud1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Lattice corneal dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.304
Carcinoma, Hepatocellular	CTD Gene-Disease Associations	1.0	1.63653
LHX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.6213
BRD-K76942055	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.57842
Chloroplast stroma	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.476
Uterine Carcinosarcoma_UCS_TCGA-N9-A4Q7-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE155031_6_v_3_dextran_human	RummaGEO Drug Perturbation Signatures	1.0	null
Muscular dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.156
genistein-382	CMAP Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
r10 part of ventral parvicellular reticular formation	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.57771
GSE207471_2_v_3_btla_human	RummaGEO Gene Perturbation Signatures	1.0	null
SP in midlateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-2.20353
intermediate stratum of Hb	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.06113
PTEN_KD_GDS2958_101_human_SKBR-3 MAMMARY ADENOCARCINOMA cell line	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
SNU620	DepMap CRISPR Gene Dependency	1.0	4.28089
anion binding	GO Molecular Function Annotations 2015	1.0	null
superficial dorsofrontal area	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.00351
peroxisome	GO Cellular Component Annotations 2015	1.0	null
hsa-miR-1305	TargetScan Predicted Conserved microRNA Targets	1.0	0.165047
GSE149075_2_v_5_foxa2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
FU97	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10449
IZ in lateral temporal-occipital cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.87901
GSE182834,GSE182836_2_v_1_siah2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
nucleoside phosphate binding	GO Molecular Function Annotations 2015	1.0	null
Organelle lumen	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
DMRTA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.3768
Malaria	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.34
GSE171292_1_v_0_ehhadh_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Synucleinopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.532
Cellulosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.63
Precommissural nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.56805
GSE110524_2_v_5_metformin_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
urinary system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.829034
NCI-H2052	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.875658
BRD-K13275816	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.95455
Ovarian disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.41
Perturb_11073_Mut_Tak1/Ripk1_SRP256942	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	9.42584
Teeth hard tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.277
CCK81	CCLE Cell Line Gene CNV Profiles	-1.0	-1.65186
urinary bladder	HPA Tissue Protein Expression Profiles	1.0	0.806843
interstitial nucleus of the posterior limb of the anterior commissure	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.10577
POSTN_01_293	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	3.91837
CRCGN009_HEPG2_24H:F19	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	6.76965
central nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.055746
hsa-miR-5096	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
BRD-K88613983	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.28902
Aerial part	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.745
BRD-A20731954	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.492
Endosperm	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.18
orbital frontal cortex_30 yrs_F_12290	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.829563
BRD-K22988729	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.04439
BRD-K64640769	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.25537
Atherosclerosis	CTD Gene-Disease Associations	1.0	1.28765
CRCGN017_MCF10A.TP53.M_24H:O08	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.3241
CTCF_kidney_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ventrolateral prefrontal cortex_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.36692
CTCF-31629814-HEPATOCYTES-MOUSE-TYROSINEMIA	ChEA Transcription Factor Targets 2022	1.0	null
BRD-K03546460	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.03202
Pith	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.54
Phellem	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.973
CRCGN015_MCF10A.TP53.M_24H:G06	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.69496
catabolic process	GO Biological Process Annotations 2015	1.0	null
NCI-H2291	GDSC Cell Line Gene Expression Profiles	1.0	1.58949
Vascular tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.557
Uterine disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.19
Xylanosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.809
GSE166315_1_v_0_docetaxel_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
BRD-K37486644	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.55318
Steatotic liver disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.056
Metabolism	Reactome Pathways 2024	1.0	null
Thrombosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.429
GATA2	ENCODE Transcription Factor Targets	1.0	null
KDM2A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.67365
496100554_FWM_no dementia_no TBI_78_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.1237
BRD-K65183353	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.00546
GSE152937_12_v_1_slc16a13_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
tuber	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.570021
GSE165307_3_v_0_gfi1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Lung adenocarcinoma_LUAD_TCGA-05-4396-01A-21R-1858-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
organelle lumen	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
AGS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.839842
t30-blood-rna_male_4w	MoTrPAC Rat Endurance Exercise Training	-1.0	-1.732
thorax	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055971
GSE148066,GSE157787_0_v_4_n4bp1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
microbody lumen	GO Cellular Component Annotations 2025	1.0	null
BRD-K46348476	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-5.23019
Disease of mental health	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.537
BRD-K51104732	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.36367
intracellular organelle lumen	GO Cellular Component Annotations 2015	1.0	null
liver	GTEx Tissue Gene Expression Profiles	1.0	2.18987
BRD-K93956318	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.62631
Chloroplast nucleoid	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.577
BRD-K69580972	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.36463
Prostate adenocarcinoma_PRAD_TCGA-EJ-7782-01A-11R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
fatty acid catabolic process	GO Biological Process Annotations 2025	1.0	null
BRD-K54332480	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.13495
Musculoskeletal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.769
intracellular organelle lumen	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.127778
PMC7021771-41467_2020_14684_MOESM7_ESM.xlsx-CASZ1_ChIPseq_in_SMS-CTR_MEKi-Gene_Name_CASZ1	Rummagene Transcription Factor Associations 2026	1.0	null
[Ni-Fe] hydrogenase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.857
peroxisomal matrix	GO Cellular Component Annotations 2025	1.0	null
BRD-K56691168	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.42546
RNAi_-666_19339689	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
GBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.428
CTCF_liver_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
primary alcohol catabolic process	GO Biological Process Annotations 2023	1.0	null
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-EK-A2RK-01A-11R-A18M-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Chloroplast outer membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.821
BRD-K13267130	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.5705
BRD-K68435627	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.37489
CRCGN017_MCF10A.TP53.M_24H:P19	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.4573
GSE237040_0_v_1_notch3_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Urine	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.386
BRD-K50177531	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.76945
BRD-K84271229	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.14322
BRD-K29898553	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.38412
post-anaphase microtubule array	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.944
GSE145323,GSE145324_1_v_0_rfx3_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Macrophage cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.472
OSRC2	CCLE Cell Line Gene CNV Profiles	1.0	1.55439
HUH-6-CLONE5	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Spi1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	61.8657
NANOG-18555785-CHIP-SEQ-ESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
GSE160373_5_v_4_pparg_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Intrinsic component of mitochondrial inner membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.939
PMC3500769-srep00875-s3.xls-GATA3-Time_1_GATA3	Rummagene Transcription Factor Associations 2026	1.0	null
Basomedial amygdalar nucleus, posterior part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.42136
cholesterol	GAD Gene-Disease Associations	1.0	null
CRCGN014_HEPG2_24H:B08	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.5232
H3K79me2_liver_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
Kidney renal papillary cell carcinoma_KIRP_TCGA-GL-6846-11A-01R-1965-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
DICER1_KO_GDS4504_586_mouse_bone marrow granulocyte-macrophage progenitors	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
EN2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.2309
Kidney renal papillary cell carcinoma_KIRP_TCGA-BQ-5878-11A-01R-1592-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K30921693	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.16836
RSF complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.627
GSE207914_4_v_7_nudt7_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
urogenital system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.640833
Apocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.553
preoptic	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-1.16356
LTBR_INHIBITION - 1 Day_GDS2004_733_mouse_Lymph nodes  (MG-430A)	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
Medial amygdalar nucleus, posterodorsal part, sublayer b	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.37302
Gastric juice	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.745
SMAD4-21799915-A2780-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
BRD-K03089783	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.48645
subpretectal nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.24365
cellular_component	LOCATE Predicted Protein Localization Annotations	1.0	null
H3K27me3_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BHT-101	GDSC Cell Line Gene Expression Profiles	-1.0	-1.89054
Hematopoietic system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.502
HEC59	CCLE Cell Line Gene CNV Profiles	-1.0	-1.52377
BRD-K49577636	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.00755
BRD-K27121064	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.36475
plastid outer membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.573411
CRCGN015_MCF10A_48H:G15	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	7.98545
GSE133213_6_v_5_znrf3_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-DK-A3WX-01A-22R-A22U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K32170456	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.33954
plant-type vacuole	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.13
BRD-K77214780	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.72537
BRD-K28057105	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.48603
GSE175787_11_v_6_rhoc_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE212486,GSE212488_0_v_1_gata4_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Neurodegenerative disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.824
BRD-K07384081	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.74594
ARPE-19 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.012
midline nuclear complex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-2.11332
CAV3_KO_GDS3533_17_mouse_mammary glands	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
GSE95685_6_v_3_tcpobop_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
lateral part of r7B	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.05969
Alx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	17.9994
CAL-12T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.4406
REST-18959480-MESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
BRD-K65829768	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.4482
cellular_component	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
HT1197	CCLE Cell Line Gene CNV Profiles	1.0	2.1924
Metabolism of amino acids and derivatives	Reactome Pathways 2014	1.0	null
CRCGN012_HEPG2_24H:G07	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.77489
r9 part of ventral parvicellular reticular formation	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.10861
Riboflavin Monophosphate	DrugBank Drug Targets	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-YL-A8SQ-01B-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
intracellular part	LOCATE Curated Protein Localization Annotations	1.0	null
Bundle sheath cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.537
IKZF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.7592
J-774A.1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.742
Tuberomammillary nucleus, ventral part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.8251
Disease of metabolism	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.727
ABC-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
TO175T	CCLE Cell Line Gene Expression Profiles	1.0	1.59343
fatty acid alpha-oxidation	GO Biological Process Annotations 2025	1.0	null
DOTC2-4510	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BRD-K97763545	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.14783
Disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.366
BRD-K67458784	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.10087
Shoot	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.589
GSE62843,GSE64370_0_v_3_furan_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
orbital frontal cortex_13 pcw_M_12888	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.50179
Acute intermittent porphyria	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.344
ES3	COSMIC Cell Line Gene Mutation Profiles	1.0	null
HUP-T4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.01201
BRD-K27909962	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.16514
dorsal septopreoptic nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.16481
Nose morphology	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.61549
midbrain reticular formation	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.04959
Photosystem	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.187
BRD-K20051655	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.48214
Anemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.288
BRD-K92379545	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.1563
Large intestine cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.638
Ferritin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.814
periventricular nucleus, preoptic portion	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.14117
BRD-K74663731	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.83999
Paraventricular hypothalamic nucleus, parvicellular division, anterior parvicellular part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.06745
Vitreous humor	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.025
those	GeneRIF Biological Term Annotations	1.0	null
CLDN3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.61987
amygdalo-striatal transition	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.91802
KM12	BioGPS Cell Line Gene Expression Profiles	1.0	0.895385
GSE182834,GSE182836_8_v_3_siah2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
cellular lipid catabolic process	GO Biological Process Annotations 2015	1.0	null
CRCGN015_HEPG2_48H:J16	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	6.73
ventrolateral prefrontal cortex_15 yrs_M_12299	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.64273
GSE162575,GSE162609_3_v_2_tfe3_human	RummaGEO Gene Perturbation Signatures	-1.0	null
cytoplasmic part	LOCATE Predicted Protein Localization Annotations	1.0	null
membrane-bounded organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
GSE200352_10_v_8_pparg_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-UY-A9PE-01A-11R-A38B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K84636055	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.0378
Synaptic vesicle protein transport vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.1
stomach	HPA Tissue Protein Expression Profiles	1.0	0.806843
Primary cell wall	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.066
Spz1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	20.25
TRIM24_knockout_299_GSE19675	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	-1.0	-2.35915
CRCGN017_MCF10A.WT.HP_24H:O04	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.1816
liminal part of the r10 alar plate	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.18244
NCIH441	CCLE Cell Line Gene CNV Profiles	-1.0	-2.12302
BT20	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.12593
BRD-K87082948	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.67143
hnf4a_16714383_e18dot5_liver_lof_mouse_gpl1261_gds1916	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	-1.0	-0.081359
petal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.486326
Adrenomedullin receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.779
gland	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
HEP G2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.33699
toc complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.696905
UMRC7	DepMap CRISPR Gene Dependency	1.0	3.78305
Lung adenocarcinoma_LUAD_TCGA-64-5775-01A-01R-1628-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
thylakoid	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.545648
hsa-miR-132	TargetScan Predicted Conserved microRNA Targets	1.0	0.293524
GATA2-21666600-HMVEC-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
NCI-H716	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.00146
Lymphatic system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.184
intracellular part	GO Cellular Component Annotations 2015	1.0	null
Glycolate oxidase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	3.281
Kinetochore	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.57
lung cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059683
H3K27me3_fibroblast of dermis_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Glutamate dehydrogenase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.899
COLO678	DepMap CRISPR Gene Dependency	1.0	2.13977
BRD-K99250186	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.27839
Ezh2_deficiency_GDS2717_141_mouse_lymph node T cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
CRCGN016_MCF10A.TP53.M_24H:G10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.82511
Immune system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.7
HOXA4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.266
presents	GeneRIF Biological Term Annotations	1.0	null
NCI-H1734	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17896
BRD-K66655211	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.50665
KLF4-18555785-CHIP-SEQ-ESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
BRD-K32485819	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.23083
GTPase activator complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.485
ventrolateral preoptic nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.00278
A2BAR_Deficiency_GDS3662_520_mouse_Heart	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
POLR2A_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NB17	COSMIC Cell Line Gene Mutation Profiles	1.0	null
CRCGN013_HEPG2_24H:B07	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.78634
D341MED	CCLE Cell Line Gene Expression Profiles	1.0	1.4409
NCI-H520	GDSC Cell Line Gene Expression Profiles	1.0	1.49877
PTHrP_KD_GDS1664_438_human_MDA-MB-231	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
Granum	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.194
amygdalohippocampal area	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.0288
Kidney renal clear cell carcinoma_KIRC_TCGA-AS-3777-01A-01R-0864-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
gastrointestinal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.045897
superficial stratum of r8BL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.66648
oxidoreductase activity	GO Molecular Function Annotations 2015	1.0	null
epithelial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053043
Appendix	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	0.873595
ABC-1	COSMIC Cell Line Gene CNV Profiles	1.0	2.93899
Oxygen	HMDB Metabolites of Enzymes	1.0	null
primary somatosensory cortex (area S1, areas 3,1,2)_8 yrs_M_12841	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.87512
M-1	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-2.62558
LAN2	DepMap CRISPR Gene Dependency	1.0	2.90954
spinalcordlower	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-1.12027
mediodorsal nucleus of thalamus_16 pcw_M_12879	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.2643
BRD-K12132610	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.16665
Labial gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.906
Depressive disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.176
Cerebral Hemorrhage	CTD Gene-Disease Associations	1.0	1.11707
CRCGN012_HEPG2_24H:K07	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.10192
SOX2-18555785-CHIP-SEQ-ESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
inferolateral temporal cortex (area TEv, area 20)_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.57012
HCC2157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14386
cytoplasmic part	GO Cellular Component Annotations 2015	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-DD-A39W-11A-11R-A213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
periventricular stratum of p2Lim	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.6446
Cardiovascular system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.062
dorsolateral prefrontal cortex_16 pcw_M_12879	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.50179
BRD-K04930806	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.29816
Gustatory areas, layer 2/3	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.04442
NCI-H1373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.875815
CRCGN016_MCF10A.WT.HP_24H:A17	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.34946
BRD-K82882121	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.42555
HA1E	DepMap CRISPR Gene Dependency	1.0	6.35238
Perturb_8043_KO_Zeb2_SRP261907	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-6.69664
BRD-K15694916	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.04944
dorsolateral prefrontal cortex_30 yrs_F_12290	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.25889
Cob	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.917
chloroplast	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.13778
Callus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.04
Kidney renal papillary cell carcinoma_KIRP_TCGA-BQ-5884-11A-01R-1592-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE240027,GSE240030_5_v_0_atrx_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Arteriosclerosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.385
BRD-K90756713	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.66494
Radial spoke head	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.189
BRD-K07336866	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.54958
r7 part of dorsal parvicellular reticular formation	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.14885
BRD-K76616863	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.44189
BRD-K72835476	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.02942
CRCGN017_MCF10A.WT.HP_24H:H07	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.0888
GSE158431_5_v_1_pioglitazone_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
Tuberomammillary nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.78306
NCIH1666	CCLE Cell Line Gene CNV Profiles	1.0	1.9321
BRD-K40116023	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.89561
BRD-K03937692	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.08958
hsa-miR-1208	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.13535
H2AFZ_osteoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Cardiac Troponin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.025
primary auditory cortex (core)_30 yrs_F_12290	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.829563
duodenum	HPA Tissue Protein Expression Profiles	1.0	0.806843
Laticifer	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.367
POU3F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.8934
hsa-miR-181a	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
Primary root	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.844
Pax7	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	40.9032
Parasitic infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.337
posterior (caudal) superior temporal cortex (area 22c)_12 pcw_F_12835	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.10595
Brain Lower Grade Glioma_LGG_TCGA-DU-8165-01A-11R-2256-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
C3A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.86706
affinity	GeneRIF Biological Term Annotations	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-FS-A1ZS-06A-12R-A18T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cellular nitrogen compound metabolic process	GO Biological Process Annotations 2015	1.0	null
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-C5-A7CH-01A-11R-A33Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cell culture	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.066609
Central nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.069
striatal amygdala	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.19902
HOXB4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.3931
REST-18959480-MESC-mouse	ChEA Transcription Factor Binding Site Profiles	1.0	null
ETV2::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.7677
Troponin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.336
reticular formation of CoPL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.37302
BRD-A55722685	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.22964
organic hydroxy compound catabolic process	GO Biological Process Annotations 2015	1.0	null
Dinoflagellate hypocone	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.556
Dentures	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.709691
intracellular	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.933129
BRD-K58696904	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.94384
Fruit peduncle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.185
SMN-Sm protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.992
Hydrogen peroxide	HMDB Metabolites of Enzymes	1.0	null
lateral part of r8B	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.37833
GSE228619_0_v_1_cdh11_human	RummaGEO Gene Perturbation Signatures	1.0	null
BRD-K45348630	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.01714
BRD-K87670244	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.23981
NCIH854	CCLE Cell Line Gene CNV Profiles	1.0	1.9335
4-P-PDOT	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.02381
t30-blood-rna_female_2w	MoTrPAC Rat Endurance Exercise Training	-1.0	-17.7489
Lung cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.713
intracellular organelle part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Stomach disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.238
BRD-K78866450	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.0139
Striated muscle thin filament	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.335
PHOX2B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	60.0136
membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
Hepatomegaly	CTD Gene-Disease Associations	1.0	1.91001
amygdaloid complex_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.860505
ZR-75-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.943401
inferolateral temporal cortex (area TEv, area 20)_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.22757
hippocampus (hippocampal formation)_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.14719
CRCGN014_HEPG2_24H:A17	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.0167
SNAI2_01_225	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	7.6606
orbital frontal cortex_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.14224
FOXD2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	54.7329
Reperfusion Injury	CTD Gene-Disease Associations	1.0	1.02262
Hemocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.258
NCI-H1975	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.875658
RLF	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.74771
GSE125007,GSE125008_10_v_0_uhrf1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Tuberculosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.331
Gastric adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.875
Root hair	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.02
CAPAN-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.97078
Edema	CTD Gene-Disease Associations	1.0	1.60244
organic cyclic compound binding	GO Molecular Function Annotations 2015	1.0	null
Bone disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.605
chloroplast envelope	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.18702
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
SG in dysgranular insular cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.00069
GATA3-21867929-TH1-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
igr1	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.614
r9 part of the basolateral reticular formation	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.58302
CRCGN015_MCF10A.TP53.M_24H:C07	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.2451
Heel bone mineral density	GWAS Catalog SNP-Phenotype Associations 2025	1.0	1.05229
SMRT-27268052-CHIP-SEQ-BCELLS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Perturb_5929_KD_MBD3_SRP271175	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	1.85932
Brain Lower Grade Glioma_LGG_TCGA-DU-A5TT-01A-11R-A28M-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Inherited metabolic disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.743
Diabetic ketoacidosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.262
CRCGN016_MCF10A.WT.HP_24H:D04	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	6.1027
periaqueductal gray substance, ventral portion	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.13193
BICR6	CCLE Cell Line Gene Expression Profiles	1.0	1.6698
GSE184087_4_v_3_tert_human	RummaGEO Gene Perturbation Signatures	1.0	null
shoot	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.48786
ECGI10	CCLE Cell Line Gene CNV Profiles	1.0	1.55574
SOX9-26525672-CHIP-SEQ-HEART-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
BRD-K89811208	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.71963
FOXO1::FLI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.7512
BRD-K71204648	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.84022
GSE148066,GSE157787_0_v_10_n4bp1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
XRCC2-RAD51D complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.646
CRCGN015_HEPG2_48H:J17	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	7.22555
BRD-K66649343	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.18474
BRD-K66311249	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.34265
Keloid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.702
enzyme	GeneRIF Biological Term Annotations	1.0	null
GSE217405_3_v_2_egfr_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Malignant astrocytoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.521
BARX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.1742
HPAF-II	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.35519
EBF1-22473956-BONE-MARROW-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
BV-173	GDSC Cell Line Gene Expression Profiles	-1.0	-1.50655
Protein body	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.73
Autoimmune disease of musculoskeletal system	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.228
CRCGN014_HEPG2_24H:I12	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.96945
lateral part of r9B	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.56971
hsa-miR-596	TargetScan Predicted Conserved microRNA Targets	1.0	1.26663
BRD-K28803288	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.38094
ZNF354A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	79.051
binds	GeneRIF Biological Term Annotations	1.0	null
Lysosomal storage disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.204
ML-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.082
HCC2302	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02939
EFO-27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.990966
caudal presubiculum (postsubiculum)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.96613
hsa-miR-4509	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
Urinary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.006
GBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.3627
microbody	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.99548
glycolate catabolic process	GO Biological Process Annotations 2015	1.0	null
GSE157594_6_v_4_nicotinamide_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
ISX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.6726
BRD-K50210179	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.74696
Autoimmune disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.597
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.836455
Arbuscule	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.72
B875 antenna complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.1
NCI-H1648	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.60641
BRD-K40016301	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.57717
Lung disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.792
Micronuclei, Chromosome-Defective	CTD Gene-Disease Associations	1.0	1.47452
SARS-CoV MA15_Day4_None_GSE49263	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.76775
perianth	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.432225
Liver Diseases	CTD Gene-Disease Associations	1.0	1.82621
hsa-miR-4318	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
HCC202	DepMap CRISPR Gene Dependency	1.0	4.34182
UNCX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.4
BRD-K44193634	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.24865
BRD-K69699301	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.24114
GATA3	JASPAR Predicted Transcription Factor Targets	1.0	null
PBX1-22567123-OVCAR3-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
BRD-K11671824	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.50782
HS746T	DepMap CRISPR Gene Dependency	1.0	2.64302
Pulmonary artery endothelial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.579
BRD-K58534227	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.97167
Intercalated amygdalar nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.98413
Asi complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.782
BRD-K33005275	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.03694
PMC8709578-elife-69843-supp2.xlsx-HSF1_KO_2_Ctr-Nearest_Ensembl_HSF1	Rummagene Transcription Factor Associations 2026	1.0	null
SATB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.2234
Bed nuclei of the stria terminalis, posterior division, strial extension	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.13678
Lipid storage disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.177
OCIM2	DepMap CRISPR Gene Dependency	1.0	3.55954
HCC1569	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.56247
X-linked monogenic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.21
Alveolar macrophage cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.663
BRD-K70052888	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.7986
GSE88819_6_v_10_tug1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Accessory facial motor nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.31719
CRCGN015_MCF10A_48H:C24	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.71333
dorsolateral part of Int	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.92049
Chlorenchyma	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.263
PMC3500769-srep00875-s3.xls-PAX2-Time_1_PAX2	Rummagene Transcription Factor Associations 2026	1.0	null
Dlx5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	23.7008
BRD-K20368781	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.64808
POU3F2-20337985-501MEL-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
anterior (rostral) cingulate (medial prefrontal) cortex_10 mos_M_12977	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.839636
Cmah_KO_GDS4770_421_mouse_muscle	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.47288
GSE129389_0_v_5_tropifexor_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
Wholebrain	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-1.04347
BRD-K74107343	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.59052
ChIP_REST_18959480	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
AR-20517297-VCAP-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
mainolfactoryepithelium.MOE.	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-1.0511
Lung carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.348
Fumarate reductase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.916
BRD-K70090544	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.04466
Msx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	21.0133
GSE87412,GSE92423_0_v_4_dnmt3a_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
light-harvesting complex, peripheral complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.946
flower	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.109665
BRD-K28623804	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.80687
Breast cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.137
Perturb_10733_OE_Sirt6_SRP282071	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	5.50223
absorbance	GeneRIF Biological Term Annotations	1.0	null
bundle sheath cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.650154
Exoskeleton	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.243
BRD-K98089885	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.25848
BRD-K05222558	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.3028
Liver hepatocellular carcinoma_LIHC_TCGA-NI-A4U2-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
fatty acid oxidation	GO Biological Process Annotations 2015	1.0	null
BRD-K59772014	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.60251
BRD-K57084585	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.44518
HUH-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.62001
Syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.526
Leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.37
mantle zone of r9BL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.57078
Hep-G2 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.804
BRD-K88658905	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.75568
GATA2-22383799-G1ME-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
Upper epidermis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.753
PMC8528285-pbio.3001085.s010.xlsx-Fig_S8D-GENE_LIST_UPLOADED_TO_ENRICHR_MNT_WT_3T3_ONLY_1626_GENES_MNT	Rummagene Transcription Factor Associations 2026	1.0	null
BRD-K35788497	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.15848
BRD-K28108927	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.05283
BRD-K37459038	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.19136
photosystem	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.607818
BRD-K53110645	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.10488
GSE163240_3_v_4_enzalutamide_human	RummaGEO Drug Perturbation Signatures	1.0	null
shell part of the anterobasal nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.04272
microbody lumen	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.944956
POU4F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.9991
laterodorsal subdivision of area 8	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.41128
C6 glioma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.115
Internal secretion	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.635
BRD-K12111274	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.84979
BRD-K72821236	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.03639
organelle	LOCATE Curated Protein Localization Annotations	1.0	null
BRD-K58933168	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.37739
dorsal part of CoP	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.37806
BRD-K83312314	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.56159
leaf epidermis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.56671
CAKI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.836455
CRCGN015_MCF10A_48H:J10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.22771
Amyloidosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.469
BRD-K91235484	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.00558
BRD-K06091213	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.54893
JHH-6	COSMIC Cell Line Gene Mutation Profiles	1.0	null
FOXA1-27270436-VCAP-HUMAN-PROSTATE-CARCINOMA	ChEA Transcription Factor Targets 2022	1.0	null
GSE216538_1_v_3_mrs2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
caudal (posterior) extramural migratory stream	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.06436
ERG	ChEA Transcription Factor Targets	1.0	null
Retinal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.314
epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.050854
BRD-K30795375	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.29789
PAX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.5986
GSE148066,GSE157787_8_v_10_n4bp1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
BRD-K91671568	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.2895
BRD-K27331198	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.87714
BRD-K53356402	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.82569
Irf1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	76.6737
HCC1428	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.69633
Leaf	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.33
organic substance catabolic process	GO Biological Process Annotations 2015	1.0	null
BRD-K95147720	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.68055
BRD-K96295480	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.92676
BRD-K58220038	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.0015
BRD-K53771043	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.19858
GSE60837_6_v_3_bcl9_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
oxidase	GeneRIF Biological Term Annotations	1.0	null
Magnetosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.677
cellular aldehyde metabolic process	GO Biological Process Annotations 2015	1.0	null
BRD-K05128360	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.94319
CRCGN015_MCF10A.TP53.M_24H:B10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	7.5059
SNU878	CCLE Cell Line Gene Expression Profiles	1.0	2.40871
r8 part of dorsal parvicellular reticular formation	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.28175
BRD-K48999921	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.2082
CREB1	JASPAR Predicted Transcription Factor Targets	1.0	null
primary auditory cortex (core)_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.38976
digestive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.03741
BRD-K47995281	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.32398
Presynaptic cytoskeleton	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.512
abnormality of cardiovascular system physiology	GWASdb SNP-Phenotype Associations	1.0	0.425941
hsa-miR-1297	TargetScan Predicted Conserved microRNA Targets	1.0	0.541706
Pancreas disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.623
HCC364	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34362
finasteride-4300	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
BRD-K50941255	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.01257
Venom gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.671
CAR-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
dorsolateral prefrontal cortex_9 pcw_M_12833	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.19947
medial habenular nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.35355
GSE182835,GSE182836_0_v_1_siah2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Connective tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.722
Chl	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.883
BRD-K33274327	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.22437
Tassel	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.663
Breast adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.045
Anemia, Hemolytic	CTD Gene-Disease Associations	1.0	1.05015
Viscus	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
CRCGN016_MCF10A.TP53.M_24H:O11	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.15746
GSE216538_5_v_6_mrs2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE210655_3_v_7_cisplatin_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
nm94	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.844
ZNF26	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.56684
Inflammatory bowel disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.018
Kidney renal papillary cell carcinoma_KIRP_TCGA-A4-A5Y1-01A-11R-A28H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Adenoma, Liver Cell	CTD Gene-Disease Associations	1.0	1.24433
fmn binding	GO Molecular Function Annotations 2015	1.0	null
GSE129370_2_v_3_ethanol_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
BRD-K63354944	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.45361
intermediate stratum of r8BL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.28668
FGFR3_KD_GDS4454_79_human_RT112	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
GSE148066,GSE157787_5_v_10_n4bp1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Musculoskeletal system disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.821
CRCGN014_HEPG2_24H:P23	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.02293
Heterochromatin domain	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.141
CRCGN016_MCF10A.WT.HP_24H:P23	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.54884
Brain Lower Grade Glioma_LGG_TCGA-DU-A76K-01A-11R-A33Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Peroxisome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.373
GSE215132_1_v_0_ptpn2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
intermediate stratum of CoPL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.40986
GATA5_KO_GSE47425_386_mouse_lung	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
BRD-K76600600	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.10901
TARDBP_02_116	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	4.12928
GSE217115_2_v_4_alectinib_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
BRD-K64748422	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.77844
PMC6826333__F1	PFOCR Pathway Figure Associations 2023	1.0	null
BRD-A97270959	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.16248
Starch grain	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.112
intermediate stratum of AStr	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.28879
UM-UC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.80059
BRD-K90918886	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.06479
BHY	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.949575
ra95	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.569
ABC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01786
periventricular stratum of RtC	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.10577
CRCGN016_MCF10A.WT.HP_24H:O09	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.0496
BRD-K13350372	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.67197
inferolateral temporal cortex (area TEv, area 20)_13 pcw_M_12820	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.8659
Hmx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	20.0803
CRCGN015_MCF10A_48H:G01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	6.4889
Genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.706
Congenital Abnormalities	CTD Gene-Disease Associations	1.0	1.40677
nitrogen compound metabolic process	GO Biological Process Annotations 2015	1.0	null
Intercellular canaliculus	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.696
Microspore	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.687
reduced	GeneRIF Biological Term Annotations	1.0	null
Perturb_11133_KO_Hdac3_SRP082562	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-13.5704
NCI-H1666	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.47288
BRD-K23467057	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.23004
496100656_HIP_no dementia_no TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.25173
organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.060056
RCM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.836455
Psychotic disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.056
GLI3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.6592
Stele	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.572
Nucleus of the posterior commissure	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.78194
r2 part of vestibular nucleus Y	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.41163
primary alcohol catabolic process	GO Biological Process Annotations 2025	1.0	null
superficial stratum of CoPD	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.38854
HT-29	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BRD-K63171151	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.86905
monocarboxylic acid catabolic process	GO Biological Process Annotations 2023	1.0	null
BRD-K20024676	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.40591
C-10 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.9
KYSE-450	GDSC Cell Line Gene Expression Profiles	-1.0	-1.75581
CRCGN017_MCF10A.WT.HP_24H:P24	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.2069
SP in dorsomedial frontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.11434
hsa-miR-2110	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
NFIX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.0514
PBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.4911
hsa-miR-212	TargetScan Predicted Conserved microRNA Targets	1.0	0.283838
BRD-K35240878	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.79214
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-EA-A97N-01A-11R-A38B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NFKB1-27076634-BEAS2B-HUMAN-LUNG-INFLAMMATION	ChEA Transcription Factor Targets 2022	1.0	null
r5 part of ventral parvicellular reticular formation	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.41594
HCC2185	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.03605
Organelle membrane contact site	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.649
RBM25_02_119	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	3.32193
Influenza	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.523
SARS-ddORF6_96Hour_23935999_GSE47961	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	2.25043
OLIG3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8256
r9 basal plate	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.08713
GSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.0794
microbody	LOCATE Predicted Protein Localization Annotations	1.0	null
GSE199899_3_v_2_diethylnitrosamine_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
EHMT2_KD_GSE34925_693_human_MDA-MB231 cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
MTCH2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.29368
GSE121198,GSE129779_3_v_1_arid1a_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Microbody membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.575
mantle zone of r1BI	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.14845
BRD-K29466595	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.47084
NCI-H929	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.33795
GSE164508_1_v_0_bortezomib_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
NOL11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	5.9248
GSE121198,GSE129779_3_v_2_arid1a_human	RummaGEO Gene Perturbation Signatures	-1.0	null
LS-411N	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GATA3_SK-N-SH_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
REST	ChEA Transcription Factor Targets	1.0	null
Seed	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.348
GSE94011_2_v_1_pias3_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
pyrazinamide_mus musculus_gpl6246_gse48027	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Colorectal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.635
TRAPPC5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.43495
Gastrointestinal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.059
NVT complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.916
Chloroplast thylakoid	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.412
Colorectal cancer or advanced adenoma	GWAS Catalog SNP-Phenotype Associations 2025	1.0	1.25229
Chamber of the eye	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.038
CRCGN015_HEPG2_48H:P04	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	6.12583
SOX9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.0658
MAFK_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SYK_druginhibition_153_GSE34176	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	-1.0	-1.56147
intracellular membrane-bounded organelle	GO Cellular Component Annotations 2015	1.0	null
reticular formation of CoPD	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.47651
external globus pallidum	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.20844
cell	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
amygdaloid complex_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.43768
BRD-K34258763	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.83824
BRD-K08408085	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.27017
GSE237040_2_v_5_notch3_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
CRCGN017_MCF10A.WT.HP_24H:E10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	6.9926
primary motor cortex (area M1, area 4)_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.04885
posteroventral (inferior) parietal cortex_13 pcw_F_12834	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.60183
Stipule	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.596
CRCGN014_HEPG2_3H:P03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.5019
Hip minimal joint space width	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.6
Primary immunodeficiency disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.603
MEF2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.1892
GSE190534,GSE190536_0_v_1_cyclophosphamide_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
Hyperplasia	CTD Gene-Disease Associations	1.0	1.8996
Cognitive disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.37
primary hyperoxaluria	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	2.14891
CRCGN016_MCF10A.TP53.M_24H:O10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.35674
BRD-K59821372	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.18471
NADPH oxidase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.798
r1 part of principal trigeminal sensory nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.34105
CEBPB-20513432-MACROPHAGES-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
GSE157777_1_v_3_foxa3_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
MAFK	ENCODE Transcription Factor Targets	1.0	null
Basomedial amygdalar nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.43274
MC3T3-E1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.804
Lung adenocarcinoma_LUAD_TCGA-05-4422-01A-01R-1206-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
superficial stratum of POH	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.15461
Presynaptic active zone	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.495
periventricular stratum of VTTh	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.5513
Perianth	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.018
intermediate stratum of r10Lim	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.57823
cell part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
Rectum adenocarcinoma_READ_TCGA-G5-6572-02A-12R-1830-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K90408478	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.50507
Frt	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.297
BRD-K97362312	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.27149
inner SZ in lateral temporal-occipital cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.959973
Mucilage	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.594
Peroxisomal importomer complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.909
salivary gland	GTEx Tissue Gene Expression Profiles	-1.0	-2.10021
abnormality of lipid metabolism	GWASdb SNP-Phenotype Associations	1.0	0.332399
idioblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.76676
B16-F10 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.848
PMC7397849-supp_gad.338681.120_Supplemental_Table_S3.xlsx-S3M_Peaks_YAP1MAMLD1_TEAD4-Unnamed_11_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
Mecom	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	46.5185
RAW-264.7 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.419
Lhx4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	14.3767
4-Carboxy-5-(1-Pentyl)Hexylsulfanyl-1,2,3-Triazole	DrugBank Drug Targets	1.0	null
SMN complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.993
DMD_Deficiency_GDS2996_613_mouse_Cardiac muscles from 8-week (mdx animals)	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
monocarboxylic acid catabolic process	GO Biological Process Annotations 2025	1.0	null
artery disease	GWASdb SNP-Disease Associations	1.0	0.242305
H3K27me3_osteoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
homologous	GeneRIF Biological Term Annotations	1.0	null
BRD-K68383485	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.39395
BRD-K00882360	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.5605
Cerebrovascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.579
abnormality of cholesterol metabolism	GWASdb SNP-Phenotype Associations	1.0	0.601932
BRD-K62659610	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.80965
BRD-K94993773	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.92188
BRD-K36923996	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.2888
cobalt chloride-383	CMAP Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
organelle part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
hsa-miR-3180-5p	TargetScan Predicted Conserved microRNA Targets	1.0	0.37496
Thioglucosidase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.889
Interstitial nucleus of Cajal	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.6446
disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.596792
Cervical cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.176
Grm	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.731
Arthritis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.453
BRD-K34234678	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.03958
Root apical meristem	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.735
Plant reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.042
18801183-SuppTable1	GeneSigDB Published Gene Signatures	1.0	null
GSE224556,GSE224557_6_v_1_aire_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
FOXL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.682
microbody part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Plastid	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.351
BRD-K31195910	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.90152
LTBR_INHIBITION - 3 Day_GDS2004_735_mouse_Lymph nodes  (MG-430A)	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
BRD-K56588599	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.47903
posterior paraventricular nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.19902
Bone remodeling disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.026
L-cysteine desulfurase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.601
primary visual cortex (striate cortex, area V1/17)_24 pcw_M_12288	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.839636
GSE171292_6_v_0_ehhadh_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Cell type benign neoplasm	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.604
BRD-K40266835	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.43479
Root	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.612
Glioblastoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.398
FOXO6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.8429
Uterine cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.167
BRD-K83436911	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.00464
Ventral posteromedial nucleus of the thalamus, parvicellular part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.0089
BRD-K95007662	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.2616
lateral reticular nucleus (principal part)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.00271
digestive gland	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
CPC-N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.913403
NR3C1-21868756-MCF10A-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
BT474	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.963775
hsa-miR-1825	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
105KC	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20214
BRD-K03957217	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.21978
PMC12529848-12967_2025_7217_MOESM3_ESM.xlsx-Table_S4-Table_S4_Associations_of_genetically_proxied_proteins_with_risk_of_atrial_fibrillation_by_MR-SPI_NR3C2	Rummagene Transcription Factor Associations 2026	1.0	null
GSE110178_4_v_0_tranylcypromine_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
KARPAS-45	COSMIC Cell Line Gene Mutation Profiles	1.0	null
PMC10709143-41556_2023_1271_MOESM9_ESM.xls-Up_in_PAX7--Target_name_PAX7	Rummagene Transcription Factor Associations 2026	1.0	null
Cortical amygdalar area, posterior part, medial zone, layer 3	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.86088
intermediate stratum of CoPV	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.37302
Perturb_5955_KD_RBMX_SRP271175	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	5.58026
T98G	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02939
Acute porphyria	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.941
ZNF474	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.23856
BRD-K89760040	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.94781
Coleoptile	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.695
HOXA6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.7223
BRD-K23481525	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.18285
Presynaptic active zone cytoplasmic component	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.513
primary auditory cortex (core)_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.13965
CRCGN016_MCF10A.WT.HP_24H:M01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.65643
superficial stratum of THyB-D	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.14224
BALL-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Glutamate synthase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.659
ZIC2_01_121	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	-1.0	-0.62049
ZNF804B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.01525
intracellular organelle	LOCATE Curated Protein Localization Annotations	1.0	null
organ system cancer	GWASdb SNP-Disease Associations	1.0	0.049689
GSE188382_2_v_1_sirt5_human	RummaGEO Gene Perturbation Signatures	-1.0	null
BRD-K87159315	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.06288
Hyphal tip	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.63
HT55	COSMIC Cell Line Gene Mutation Profiles	1.0	null
transient Purkinje cell clusters	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.45715
BRD-K22316029	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.16496
Perturb_5441_KO_Zeb2_SRP261907	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-10.8154
Xylem	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.309
IRF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	57.7549
Ossification of the posterior longitudinal ligament of spine	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.95
Prenatal Injuries	CTD Gene-Disease Associations	1.0	1.68295
Forearm	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.286
BRD-K10989535	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.86816
carbamoyl-phosphate synthase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.098
FOXP2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.4439
CRCGN014_HEPG2_3H:H15	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.2509
CRCGN016_MCF10A.TP53.M_24H:F05	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.23721
oxidoreductase activity, acting on the aldehyde or oxo group of donors, oxygen as acceptor	GO Molecular Function Annotations 2023	1.0	null
SNU-668	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1774
anterior (rostral) cingulate (medial prefrontal) cortex_4 mos_M_12296	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.55017
EFM-192A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.836974
Arx	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.5312
Pruritus	CTD Gene-Disease Associations	1.0	1.02114
Glucose Intolerance	CTD Gene-Disease Associations	1.0	1.22501
GATA3_SH-SY5Y_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BRD-K61586432	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.15582
Enterovirus 71_4Hour_None_GSE15323	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	2.65334
BRD-K37203382	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.47791
CKM complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.779
496100407_FWM_probable Alzheimer's disease_no TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.18625
culture medium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.259591
layer 3 of AOD cortex	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.26717
Cell wall-bounded periplasmic space	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.8
monocarboxylic acid metabolic process	GO Biological Process Annotations 2015	1.0	null
chloroplast membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.258016
esophageal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.189551
photosystem ii	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.593072
Prostate adenocarcinoma_PRAD_TCGA-XQ-A8TA-01A-11R-A36G-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
inflorescence	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.101737
Perturb_12519_KD_IL13RA2_SRP304115	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	20.0
BRD-K66463856	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.27668
GSE210101,GSE210114_7_v_3_urod_human	RummaGEO Gene Perturbation Signatures	-1.0	null
cellular_component	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.86169
PMC5889290-koni-07-04-1412909-s001.xlsx-GSC-exo_vs_Fibro-exo_stat_sign-Gene_name_GSC	Rummagene Transcription Factor Associations 2026	1.0	null
GSE111247_0_v_6_temozolomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
H3K4me3_A549_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
Tuber	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.896
BRD-K09149805	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.07215
Stoma	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.76
BRD-K97588749	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.60649
disease of cellular proliferation	GWASdb SNP-Disease Associations	1.0	0.046269
NR4A1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.1456
FOXJ2::ELF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.5645
organism form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.277549
A_CA_04_2009_7dayMOI-10^4_None_GSE37569	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.30055
BRD-K94088690	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.49324
Pyruvate dehydrogenase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.352
mediodorsal nucleus of thalamus_13 pcw_F_12834	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.997617
Liver carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.579
SNU-216	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.89109
GSE148066,GSE157787_11_v_7_n4bp1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-DD-A1EH-11A-11R-A131-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CBRH-7919 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.62
response to oxidative stress	GO Biological Process Annotations 2015	1.0	null
BRD-K23430114	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.16251
Root tip	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.194
HNF4G	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.8937
Chloroplast ATP synthase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.744
RH18	CCLE Cell Line Gene CNV Profiles	1.0	1.35045
VMRCLCD	CCLE Cell Line Gene Expression Profiles	-1.0	-2.06523
inferolateral temporal cortex (area TEv, area 20)_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.46314
Oligospermia	CTD Gene-Disease Associations	1.0	1.07482
PMC6683136-41598_2019_47363_MOESM4_ESM.xlsx-GENE_SET-Positive_correlation_of_ZEB1_and_other_genes_ZEB1	Rummagene Transcription Factor Associations 2026	1.0	null
GSE193177_1_v_3_st266_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
NCI-H1792	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.76058
Perturb_11108_KO_Cpt2/Ppara_SRP303636	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-20.0
intracellular organelle	GO Cellular Component Annotations 2015	1.0	null
acquired metabolic disease	GWASdb SNP-Disease Associations	1.0	0.253146
Rosette leaf	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.992
CREB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.4829
COLO 206F	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.953805
GATA3-30127528-BE2C-HUMAN-BRAIN-NEUROBLASTOMA	ChEA Transcription Factor Targets 2022	1.0	null
NIH-3T3 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.486
RAX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.4223
Germinated grain	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.827
BRD-K28640166	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.38782
inherited metabolic disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.0463
TCFCP2L1-18555785-CHIP-SEQ-ESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
r7 part of basolateral reticular formation	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.20355
GSE241036_0_v_1_ethanol_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
PPARD	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.5887
SHSYSY+RA	BioGPS Cell Line Gene Expression Profiles	-1.0	-0.981075
LU-135	COSMIC Cell Line Gene CNV Profiles	1.0	2.93899
ETV5::DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.453
Entorhinal area, medial part, ventral zone	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.0987
VZ in superolateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.86226
BRD-K05796207	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.3074
organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
Peripheral blood cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.31
HOXB7-26014856-BT474-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
organelle envelope	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.118742
Blood Coagulation Disorders	CTD Gene-Disease Associations	1.0	1.16799
Disease Models, Animal	CTD Gene-Disease Associations	1.0	1.37987
BRD-K46141002	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.27404
POLR2A_A549_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GSE195513_0_v_3_cpeb1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PMC6555970-40246_2019_210_MOESM1_ESM.xlsx-LF_genes_R_genes-Common_genes_in_all_LF_species_not_found_in_common_genes_of_R_species_LTF	Rummagene Transcription Factor Associations 2026	1.0	null
Tooth disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.239
CRCGN016_MCF10A.TP53.M_24H:K05	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	8.1259
PMC7397849-supp_gad.338681.120_Supplemental_Table_S3.xlsx-S3K_Peaks_wtYAP1_TEAD4-Unnamed_11_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
SG in primary auditory cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	2.79786
End stage renal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.118
esophagus	HPA Tissue Protein Expression Profiles	1.0	0.806843
GSE101336_1_v_0_decitabine_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
membrane part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.050873
Stem	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.466
anterior (rostral) cingulate (medial prefrontal) cortex_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.03049
Colorectal adenoma	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.604
INA complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.998
Nectar	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.796
thoracic cancer	GWASdb SNP-Disease Associations	1.0	0.477601
CRCGN017_MCF10A.WT.HP_24H:C19	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	7.02995
FOXS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.7032
MFE319	CCLE Cell Line Gene Expression Profiles	1.0	1.53215
Proteinuria	CTD Gene-Disease Associations	1.0	1.64595
PMC11058205-42003_2024_6202_MOESM5_ESM.xlsx-Data2c_CEBPA_ChIP-Unnamed_9_CEBPA	Rummagene Transcription Factor Associations 2026	1.0	null
BRD-K10541973	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.15862
Colonic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.475
CHD9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.41985
thylakoid membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.267505
medial subdivision of central nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.29375
CRCGN010_HEPG2_24H:G14	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.92035
TRPS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.134
A172	BioGPS Cell Line Gene Expression Profiles	-1.0	-1.28008
AP-1 adaptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.726
medial tuberal nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.67087
CRCGN016_MCF10A.WT.HP_24H:H08	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.22057
SW 620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.33699
GSE146074_9_v_11_ly6e_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Cell wall	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.125
PMC10809641-DataSheet3.pdf-156-HAND2_HAND2	Rummagene Transcription Factor Associations 2026	1.0	null
MCF-7 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.956
Prefoldin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.741
EMX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.0106
BRD-K25444802	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.09217
PMC8709578-elife-69843-supp2.xlsx-MIX_Ctr-Nearest_Ensembl_MIXL1	Rummagene Transcription Factor Associations 2026	1.0	null
BRD-K36539857	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.09314
TAL1-30185409-HPC-MOUSE-BONEMARROW-LEUKEMIA	ChEA Transcription Factor Targets 2022	1.0	null
Ischemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.521
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-MA-AA3W-01A-11R-A38B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE204811,GSE204813_1_v_3_trim29_human	RummaGEO Gene Perturbation Signatures	1.0	null
Middle lamella	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.351
BRD-K84935293	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.77435
BECKER	CCLE Cell Line Gene Expression Profiles	-1.0	-1.7615
organelle membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.107708
U-937	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.26674
mantle zone of r4BL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.03039
stratum lacunosum-moleculare of caudal CA1	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.11727
BRD-K23405293	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.50065
Abscission zone	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.095
Haustorium	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.952
SAM complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.024
BRD-K18601936	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	5.70089
NCIH716	CCLE Cell Line Gene Expression Profiles	1.0	1.65129
Brain cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.374
periventricular stratum of Hb	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.34881
OUMS-23	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BRD-K96076719	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.23547
NCI-H716	GDSC Cell Line Gene Expression Profiles	1.0	1.41741
fatty acid oxidation	GO Biological Process Annotations 2025	1.0	null
CT-26 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.587
hsa-miR-3647-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
BRD-K52854560	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.36718
kidney	GTEx Tissue Gene Expression Profiles	1.0	1.1852
BRD-K33221810	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.54992
BRD-K59744424	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.4372
BRD-K86721033	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.54019
H3K4me2_A549_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
catalytic activity	GO Molecular Function Annotations 2015	1.0	null
Gingival fibroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.895
CAL-148	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.913403
Sweat gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.495
BRD-K65265098	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.1567
BRD-K65438558	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.16846
indusium griseum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.09514
Aneuploidy	CTD Gene-Disease Associations	1.0	1.18193
Plastoglobule	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.973
True leaf	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.799
A253	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Medial geniculate complex, medial part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.24253
ALX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.4915
PMC8709578-elife-69843-supp2.xlsx-HSF1_KO_2_E2_30min-Nearest_Ensembl_HSF1	Rummagene Transcription Factor Associations 2026	1.0	null
DLX5_OE_GDS4577_345_mouse_Otic vesicle derived 2B1 cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
Cytoskeleton of presynaptic active zone	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.513
SW837	CCLE Cell Line Gene CNV Profiles	-1.0	-1.45995
cytoplasmic part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
hsa-miR-4757-3p	TargetScan Predicted Conserved microRNA Targets	1.0	0.131849
lateral mammillary nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.84302
hsa-miR-655	TargetScan Predicted Conserved microRNA Targets	1.0	0.348832
subgranular zone of rostral dentate gyrus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.858666
Macular degeneration	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.245
cell	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.899962
POLR2A_liver_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RAPGEF3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.95265
RUNX1-17652178-JURKAT-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
ZNF677	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.9564
Lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.171
BRD-K96491043	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.70849
LNCAP-CLONE-FGC	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-FD-A5BS-01A-21R-A26T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Eye degenerative disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.229
Fetal Death	CTD Gene-Disease Associations	1.0	1.71544
BRD-K86981519	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.15869
bounding membrane of organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.109297
Cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.052
hsa-miR-4494	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
BRD-K45498945	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.25133
abnormality of the cardiovascular system	GWASdb SNP-Phenotype Associations	1.0	0.039791
CRCGN017_MCF10A.TP53.M_24H:N16	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	6.3062
respiratory system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05384
GSE149903_3_v_2_myd88_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
organelle part	GO Cellular Component Annotations 2015	1.0	null
20035825-TableS7a	GeneSigDB Published Gene Signatures	1.0	null
Porphyria	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.899
SP in caudal hippocampal proper	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.60359
hippocampus (hippocampal formation)_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.974263
Prostate adenocarcinoma_PRAD_TCGA-KK-A8IF-01A-11R-A36G-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K66425065	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.56092
Liver hepatocellular carcinoma_LIHC_TCGA-G3-A25U-01A-11R-A16W-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Seedling	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.369
sirolimus_rattus norvegicus_gpl6247_gse35048	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
BRD-K64665523	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.42558
BRD-K03848296	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.03326
SNU1079	DepMap CRISPR Gene Dependency	1.0	2.80212
GSE154219_0_v_2_cholestyramine_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
primary motor cortex (area M1, area 4)_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.01669
BRD-K25305749	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.02449
inferolateral temporal cortex (area TEv, area 20)_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.25622
BRD-K70819166	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.64438
Perturb_17809_KO_Mrp4_SRP293793	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	12.3945
BRD-K93310782	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.10931
plant-type cell wall	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.864
Integumentary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.665
p1Lim part of periaqueductal gray	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.71377
S-layer	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.16
Caryopsis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.965
Flavin Mononucleotide	HMDB Metabolites of Enzymes	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-CS-5395-01A-01R-1470-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K84741596	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.09002
BRD-K22944782	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	5.49349
BRD-K65203256	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.55289
BRD-A70099008	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.2274
Nervous System Malformations	CTD Gene-Disease Associations	1.0	1.18489
MYC	ChEA Transcription Factor Targets	1.0	null
Silk gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.852
GSE217115_2_v_5_alectinib_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
CRCGN012_HEPG2_24H:K01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.25857
OLIG2	ChEA Transcription Factor Targets	1.0	null
Epithelial recurrent erosion dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.039
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.624927
BRD-K50008138	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.15731
amygdaloid complex_21 pcw_M_12886	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.50179
CRCGN017_MCF10A.WT.HP_24H:P03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.42655
BRD-K32782599	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.7823
FOXO1::ELK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.2628
GSE60837_6_v_4_bcl9_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Vitreous chamber of the eye	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.008
BRD-K33179234	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.1158
anterior (rostral) cingulate (medial prefrontal) cortex_16 pcw_M_12879	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.87951
coenzyme binding	GO Molecular Function Annotations 2015	1.0	null
USF2	ENCODE Transcription Factor Targets	1.0	null
mantle zone of THyB-P	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.771
BRD-K50216176	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.06023
Hepatitis	CTD Gene-Disease Associations	1.0	1.28518
BRD-K04559718	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.16747
Hepatobiliary system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.739
pha granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.521023
TUBA1B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.92201
BRD-K25426017	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.22202
parvocellular part of r8LRt	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.72392
BRD-K48276655	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.81888
MSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.462
BRD-K23905877	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.69503
primary somatosensory cortex (area S1, areas 3,1,2)_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.98211
Eggshell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.172
H2AFZ_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CRCGN017_MCF10A.WT.HP_24H:H24	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.6055
Prostate adenocarcinoma_PRAD_TCGA-VP-A875-01A-31R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.749
PMC3500769-srep00875-s3.xls-PAX2-Time_0_PAX2	Rummagene Transcription Factor Associations 2026	1.0	null
oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor	GO Molecular Function Annotations 2025	1.0	null
ZFX-18555785-CHIP-SEQ-ESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
MEF2D	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.2472
BRD-K73831546	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.08572
formation	GeneRIF Biological Term Annotations	1.0	null
KARPAS-1106P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.839842
Gastrointestinal tularemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.109
upper (rostral) rhombic lip_9 pcw_M_12833	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.23167
Lymphatic system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.235
U266B1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.35051
BRD-K87073572	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.2525
BRD-K03606830	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.04718
YY1-22570637-MALME-3M-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
Bacterial infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.559
response to stimulus	GO Biological Process Annotations 2015	1.0	null
SKMEL3	CCLE Cell Line Gene CNV Profiles	1.0	1.6244
Perturb_11187_KO_Trp53/Gdown1_SRP244620	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-7.37328
RT-112	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.990966
Frond	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.825
ONS-76	GDSC Cell Line Gene Expression Profiles	-1.0	-2.71654
Prostatic Neoplasms	CTD Gene-Disease Associations	1.0	2.88009
Kidney renal papillary cell carcinoma_KIRP_TCGA-BQ-7044-11A-01R-1965-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CVB3_30min-Infection_None_GSE697	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.30915
bacteroid	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.555274
GSE183251_7_v_3_cyp2c70_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
hsa-miR-3117-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.13535
PMC5497057-ncomms15921-s2.xlsx-AA_PCa_vs_EA_PCa-Unnamed_2_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
ventrolateral prefrontal cortex_16 pcw_M_12837	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.927189
BRD-K00938872	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.18199
Primary somatosensory area, nose, layer 6b	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.04651
cofactor binding	GO Molecular Function Annotations 2015	1.0	null
BRD-K62572662	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.42702
Intestinal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.68
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-G8-6909-01A-11R-2213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HOXD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.4323
Stat2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	199.125
COV318	CCLE Cell Line Gene CNV Profiles	1.0	1.4737
peroxisome	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
Lateral root	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.921
Root vascular cylinder	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.542
Perturb_3454_KO_Ugt8_SRP073495	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	2.55383
RS11846	BioGPS Cell Line Gene Expression Profiles	1.0	1.17052
Melanoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.864
PMC7397849-supp_gad.338681.120_Supplemental_Table_S3.xlsx-S3M_Peaks_YAP1MAMLD1_TEAD4-Unnamed_14_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
Perturb_9765_KO_Ikbkb/Shp2_SRP285005	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-3.25057
CTNNB1_OE_GDS4449_352_mouse_Embryonic kidney from E12.5 embryos (-catGOF-UB mutant)	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
Perturb_10876_KD_Glis2_SRP297106	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	2.85253
THP1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.06683
CRCGN016_MCF10A.TP53.M_24H:P10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.19943
GSE175787_11_v_9_rhoc_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Parasitic protozoa infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.331
hydrophobic	GeneRIF Biological Term Annotations	1.0	null
HMY-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.875658
Entorhinal area, medial part, ventral zone, layer 2	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.38335
IZ in caudal midinferior temporal cortex (area TF)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.25894
liver	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
rt1	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.772
BRD-K73840377	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.43021
Integrin alphav-beta3 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.33
GATA1::TAL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.0838
GSE149075_8_v_5_foxa2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
trans-Golgi network transport vesicle membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.725
PMC6870463-Table_7.xlsx-Family_H_LPS-LPS_treatment_of_BMDMs_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
BRD-K11506071	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.74797
Bcl11b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	24.4461
Nuclear dicing body	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.106
periventricular stratum of PO1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.30542
Seedpod	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.932
epithelioma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051853
av3	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.53
membrane-enclosed lumen	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
BRD-K11672894	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.19088
NR2F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.7486
HNF4alpha_KO_GDS1916_168_mouse_Embryonic liver	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
GSE152699,GSE152723_0_v_1_vemurafenib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
dorsal thalamus_9 pcw_M_12833	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.83623
epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051796
anterior (rostral) cingulate (medial prefrontal) cortex_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.20827
BRD-K71452779	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.1424
Hepatitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.253
GSE218580_1_v_0_fentanyl_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
SNU-1040	COSMIC Cell Line Gene Mutation Profiles	1.0	null
primary visual cortex (striate cortex, area V1/17)_4 mos_M_12296	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.41456
inner CP in subgenual (subcallosal) cingulate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.58566
MERO14	DepMap CRISPR Gene Dependency	1.0	3.37867
Carbohydrate metabolic disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.765
BRD-K93486796	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.34357
BRD-K16266179	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.33508
rostral ventral respiratory cell group	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.42593
Avian influenza	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.189
BRD-K45714931	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.98763
M14	GDSC Cell Line Gene Expression Profiles	-1.0	-1.51016
BRD-K39326623	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.81739
tuberal nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.08429
SK-MEL-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2956
BRD-A23345137	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.12296
BRD-K31977946	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.29743
Wes	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.379
HS939T	CCLE Cell Line Gene Expression Profiles	-1.0	-1.79664
RUNX2-22187159-PCA-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
CDX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.2441
CRCGN015_MCF10A_48H:J22	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	6.4659
JHH2	CCLE Cell Line Gene Expression Profiles	1.0	2.25277
208f	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.665
PSN1	CCLE Cell Line Gene CNV Profiles	1.0	1.48407
GSE237040_4_v_5_notch3_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
SP in subgenual (subcallosal) cingulate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.909619
GSE163240_2_v_4_enzalutamide_human	RummaGEO Drug Perturbation Signatures	1.0	null
NCI-H345	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11337
PROP1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.8947
Retrosplenial area, ventral part, layer 5	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.13014
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-GR-A4D4-01A-11R-A31O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HESX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.6822
HCC2998	BioGPS Cell Line Gene Expression Profiles	-1.0	-2.2889
SNU-398	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02939
GSE205788_0_v_1_gfap_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
external segment of globus pallidus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.23394
NMYC-18555785-CHIP-SEQ-ESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
GSE162276_4_v_0_rosiglitazone_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
U87MG	CCLE Cell Line Gene Expression Profiles	1.0	1.39516
496100515_HIP_dementia_TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.10156
BRD-K22308901	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.14161
CRCGN017_MCF10A.TP53.M_24H:N03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.0655
CRCGN008_HEPG2_24H:P03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.87715
GSE217405_0_v_2_osimertinib_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
PMC11443809-12967_2024_5663_MOESM3_ESM.pdf-53-ZHX2_ZHX2	Rummagene Transcription Factor Associations 2026	1.0	null
GSE212486,GSE212488_2_v_3_gata4_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Corneal dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.286
PMC5578490-pgen.1006879.s020.xlsx-ETV1_ChiP_pks_tags_txt-Gene_Name_ETV1	Rummagene Transcription Factor Associations 2026	1.0	null
VSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.8894
cytoplasm	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.08019
intracellular part	LOCATE Predicted Protein Localization Annotations	1.0	null
response to stress	GO Biological Process Annotations 2015	1.0	null
SARS-CoV MA15_Day1-PFU-10^4_None_GSE33266	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.86844
Symplast	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.074
BICR18	CCLE Cell Line Gene Expression Profiles	-1.0	-1.52943
Perturb_11131_KO_Yap1_SRP281955	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-20.0
lateral subhabenular nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.47651
superficial stratum of THyB-P	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	3.24399
hsa-miR-374c	TargetScan Predicted Conserved microRNA Targets	1.0	0.336728
BRD-K59535072	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.79753
Disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.821
MSC	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.18108
fatty acid catabolic process	GO Biological Process Annotations 2015	1.0	null
Fatty Liver	CTD Gene-Disease Associations	1.0	1.68464
Chitosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.649
single-organism process	GO Biological Process Annotations 2015	1.0	null
H3K9me3_H1-hESC_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
ER-23166858-MCF-7-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
GSE155031_6_v_2_dextran_human	RummaGEO Drug Perturbation Signatures	1.0	null
Silver ion transmembrane transporter complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.539
BRD-K55072060	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.99208
GSE211126_3_v_0_hapln1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
ZSCAN21	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.5259
rostral division of OFCi (area 11)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.03332
Nutrition disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.504
terete nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	3.24183
POR_KO_GDS1349_497_mouse_liver	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
jm2	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.738
GSE149075_8_v_4_foxa2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Kidney disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.944
FMN binding	GO Molecular Function Annotations 2025	1.0	null
lipid metabolic process	GO Biological Process Annotations 2015	1.0	null
hsa-miR-30a	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
amygdaloid complex_12 pcw_F_13060	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.16535
SNU-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.149
adipose-derived stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.03
glyoxylate oxidase activity	GO Molecular Function Annotations 2025	1.0	null
8305C	CCLE Cell Line Gene CNV Profiles	1.0	1.41606
superficial stratum of r9BL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.62974
oxidized	GeneRIF Biological Term Annotations	1.0	null
POU3F2-20337985-501MEL-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
Larva	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.547
BHLHA15	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.5804
CRCGN014_HEPG2_24H:J10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.2078
PMC4029819-pone.0098069.s005.xlsx-FOXA1-Table_S4_FSS_analysis_of_FOXA1_high_versus_FOXA1_low_cases_in_ER_negative_samples_p-value_0_01_FOXA1	Rummagene Transcription Factor Associations 2026	1.0	null
ml3	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.612
15701848-Table2	GeneSigDB Published Gene Signatures	1.0	null
BRD-K27236794	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.37823
EW16	DepMap CRISPR Gene Dependency	1.0	2.40858
BRD-K57464717	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.23953
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04603
leaf disc	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.92059
Perturb_10851_KO_Trim21_SRP300699	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	1.64421
P53_DN.V2	MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations	1.0	null
BRD-K32702774	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.06832
POU4F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.4782
SNU-81	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Cortical amygdalar area, posterior part, medial zone	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.38854
Adrenocortical carcinoma_ACC_TCGA-OR-A5LJ-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC10703676-41588_2023_1569_MOESM4_ESM.xlsx-ST18-Unnamed_2_ST18	Rummagene Transcription Factor Associations 2026	1.0	null
VSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.8045
nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.044009
Peroxisomal membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.576
NCI-H1693	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.969859
Sieve tube	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.908
Periodontitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.049
GSE237040_0_v_5_notch3_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
perimammillary part of THyB	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.76868
superficial stratum of Mam	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.84536
BRD-K23164928	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.6931
Petal	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.672
Pericarp	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.892
hsa-miR-30c	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.13535
BRD-K32476586	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.12062
BRD-K63624341	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.33685
GSE88819_5_v_8_tug1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Stratum corneum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.743
tissues, cell types and enzyme sources	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
LBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.3625
urinary tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.820248
dorsal terminal nucleus of the accessory optic tract	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.34418
Petiole	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.062
oxidoreductase activity, acting on the aldehyde or oxo group of donors, oxygen as acceptor	GO Molecular Function Annotations 2015	1.0	null
BRD-K39237487	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.36731
NOTO	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.4437
BRD-K09721398	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.23042
hsa-miR-573	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
GSE165647_5_v_1_cry2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
H3K4me2_HepG2_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
BRD-K32319151	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.0862
Endogenous progenitor cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.401
Carboxysome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.422
CRCGN014_HEPG2_24H:D03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.07598
addition	GeneRIF Biological Term Annotations	1.0	null
Aldolase-type TIM barrel	InterPro Predicted Protein Domain Annotations	1.0	null
Sebum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.665
GSE162276_2_v_0_rosiglitazone_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
Central amygdalar nucleus, capsular part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.61458
H3K27ac_liver_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
intermediate stratum of r10Tr	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.50421
baclofen_mus musculus_gpl1261_gse17266	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
rostral migratory stream	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.887276
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.844545
Toxic encephalopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.163
Medullary reticular nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.26717
GRM	CCLE Cell Line Gene CNV Profiles	1.0	1.50511
GSE176093_0_v_1_mineral oil_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
Perturb_8417_KO_Srsf1_SRP252896	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-3.04103
Disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.506
SIX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.0893
Childhood ear infection	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.61549
3-Phenylpyruvic Acid	DrugBank Drug Targets	1.0	null
PMC5214989__F2	PFOCR Pathway Figure Associations 2023	1.0	null
Pancreatic adenocarcinoma_PAAD_TCGA-3A-A9IO-01A-11R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC6932815-ppat.1007634.s015.xlsx-ST5_DGE_ELF1-R8AvIFN48-mock_lfc-ensembl_gene_id_ELF1	Rummagene Transcription Factor Associations 2026	1.0	null
carbohydrate metabolic disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.53436
urinary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.986428
CAPAN1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.57696
Hepatocyte Growth Factor Measurement	DisGeNET Gene-Phenotype Associations	1.0	null
PPARG-20176806-MACROPHAGES-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
ZIM3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	75.4454
RAB3A_Mutation - D77G point mutation_GDS2482_704_mouse_Hippocampus	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
GSE148262,GSE150691_1_v_2_hdlbp_human	RummaGEO Gene Perturbation Signatures	-1.0	null
BRD-K93561942	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.14018
Bacterial outer membrane vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.201
site	GeneRIF Biological Term Annotations	1.0	null
NCI-H441	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.00079
MZ in caudal perirhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.34343
Liver hepatocellular carcinoma_LIHC_TCGA-DD-A39X-11A-11R-A213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
THYN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.87374
paravermis of cerebellum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.2225
r4 part of basolateral reticular formation	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.24125
MDA MB435	BioGPS Cell Line Gene Expression Profiles	1.0	1.72839
plastid envelope	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.156688
BRD-K29802952	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.61152
CHAGO-K-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.46204
hsa-miR-4465	TargetScan Predicted Conserved microRNA Targets	1.0	0.568687
r10 part of basolateral reticular formation	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.16824
MYC-20876797-MEDULLOBLASTOMA-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
carboxylic acid metabolic process	GO Biological Process Annotations 2015	1.0	null
UBE2J2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.47384
membrane-enclosed lumen	GO Cellular Component Annotations 2015	1.0	null
Mitochondrial outer membrane translocase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.326
Liver disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.859
peroxisome	LOCATE Predicted Protein Localization Annotations	1.0	null
CRCGN017_MCF10A.WT.HP_24H:G11	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.25745
GSE157594_5_v_7_nicotinamide_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
H3K4me3_A549_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K9me3_fibroblast of lung_hg19_3	ENCODE Histone Modification Site Profiles	1.0	null
Female reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.525
BRD-K73995655	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.60032
bed nucleus of stria terminalis, lateral amygdaloid division	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.51892
Carcinoma, Hepatocellular_Hepatic Tissue_GSE4612	GEO Signatures of Differentially Expressed Genes for Diseases	-1.0	-2.26817
BRD-K41307363	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.01343
HCC1395	COSMIC Cell Line Gene Mutation Profiles	1.0	null
HOXD9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.4148
fatty acid alpha-oxidation	GO Biological Process Annotations 2015	1.0	null
ZNF189	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.9074
Rough endoplasmic reticulum	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.245
BRD-K67689282	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.95074
LMX1A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.793
BRD-K94344573	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.92687
r10 part of dorsal parvicellular reticular formation	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.50546
GSE182770,GSE182784_0_v_1_chd2_human	RummaGEO Gene Perturbation Signatures	1.0	null
Prostate disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.671
Multiple epiphyseal dysplasia 5	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.127
GSE158182_3_v_7_pnpla3_human	RummaGEO Gene Perturbation Signatures	-1.0	null
BRD-K23825243	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.25449
intermediate stratum of r5Lim	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.41738
cerebral degeneration	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.389281
KM12	COSMIC Cell Line Gene Mutation Profiles	1.0	null
intracellular organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
MAPK14_KO_GDS2693_535_mouse_liver	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
HDLM2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.5767
Capillary	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.276
CRCGN015_MCF10A_48H:K10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.84024
A549	GDSC Cell Line Gene Expression Profiles	1.0	1.76444
MDAMB175VII	CCLE Cell Line Gene CNV Profiles	-1.0	-1.35293
glyoxysomal membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.644001
GSE76771_2_v_3_atf4_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
activesite	GeneRIF Biological Term Annotations	1.0	null
BRD-K45134469	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.04994
Anemia	CTD Gene-Disease Associations	1.0	1.31596
Central amygdalar nucleus, lateral part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.75344
BRD-K63858518	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.42588
BRD-K14070721	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.14668
GSE216538_7_v_4_mrs2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
r1 part of basointermediate reticular formation	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.2434
Photosystem I	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.833
Dermatitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.107
Pallidum, dorsal region	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.06958
parasubicular cortex (parasubiculum)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.960563
Asthma_Epithelial Cell_GSE4302	GEO Signatures of Differentially Expressed Genes for Diseases	1.0	1.62602
testosterone_mus musculus_gpl8321_gse13388	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Sox7	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	20.2871
NFIA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.0
lactic acidosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.194865
Seed coat	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.785
Gata3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	23.1162
HSDL1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.56883
BRD-K85776843	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.58366
MGE-Lateral region	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.02044
DFCI024	CCLE Cell Line Gene Expression Profiles	-1.0	-2.19277
BRD-K67096761	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.17626
macromolecular complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.043721
BRD-K57786075	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.44796
HNF4A	Pathway Commons Protein-Protein Interactions	1.0	null
ZNF211	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.0428
CRCGN015_MCF10A_48H:P04	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	6.31425
r1 part of vestibulocerebellar nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.19471
Immune system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.184
Neoplasms	CTD Gene-Disease Associations	1.0	1.44681
GSE149075_6_v_4_foxa2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
interact	GeneRIF Biological Term Annotations	1.0	null
mTert_OE_GDS1211_256_mouse_Embryonic fibroblasts	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
BRD-K44133102	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.19383
organelle outer membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.143591
Prostate adenocarcinoma_PRAD_TCGA-YL-A8HO-01A-11R-A36G-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCIH2030	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34437
disease by infectious agent	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.043544
Brain cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.361
Nephritis, Interstitial	CTD Gene-Disease Associations	1.0	1.31267
BRD-K55453160	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.17524
Ncnc	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.211
GSE200352_10_v_0_pparg_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
TET2_KO_GDS4287_431_mouse_GMP - bone marrow progenitor population	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
Primary hyperoxaluria type 1	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.159
Plastid envelope	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.685
excretory gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.747927
Periodontal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.186
Insect labium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.059
Liver hepatocellular carcinoma_LIHC_TCGA-DD-A116-11A-12R-A26B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
IRF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	91.8333
CRCGN011_HEPG2_24H:L12	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.93355
Diabetes mellitus	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.671
SK-BR-3	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.935
Bacterial microcompartment	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.578
Nucleus of reunions	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.00351
evidence	GeneRIF Biological Term Annotations	1.0	null
ACHN	BioGPS Cell Line Gene Expression Profiles	-1.0	-1.63926
Chromosome passenger complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.987
GSE178113,GSE178116_0_v_1_atrx_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.27695
BRD-K71274071	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.5701
Thylakoid	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.239
Acute Myeloid Leukemia_LAML_TCGA-AB-2824-03A-01T-0736-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
TTC642	DepMap CRISPR Gene Dependency	1.0	3.11901
Chorioallantois	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.707
Parkinson's disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.533
POU6F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.9703
BRD-K85887470	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.39564
EP300_SK-N-SH_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
posterior (caudal) superior temporal cortex (area 22c)_21 pcw_M_12886	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.19947
GEO cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.634
prion disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.199033
acquired metabolic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.055883
KNS-62	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.52884
BRD-K43680691	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.507
Glutamate synthase complex (NADPH)	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.722
PSN1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.838881
BRD-K50931403	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.41809
BRD-K78397696	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.30016
Endothelial progenitor cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.405
NB7	DepMap CRISPR Gene Dependency	1.0	3.37082
Kidney Tubular Necrosis, Acute	CTD Gene-Disease Associations	1.0	1.24496
Intestinal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.638
Gas vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.811
Organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.282
SMARCA4-23332759-OLIGODENDROCYTES-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
POU4F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.4493
PMC5577301-in-17-237-s001.xls-AR_downregulated_DEGs-Kidney_GSE9493_GENE_AR	Rummagene Transcription Factor Associations 2026	1.0	null
Hic1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	16.2223
GSE188870,GSE188871_4_v_3_kat7_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
single-organism catabolic process	GO Biological Process Annotations 2015	1.0	null
GSE207433_0_v_3_crtc2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
BRD-K56836463	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.54718
carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053757
HUP-T3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04603
Thylakoid light-harvesting complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.29
TMEM229A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.75062
HNF1A	Pathway Commons Protein-Protein Interactions	1.0	null
GSE120370_0_v_3_thrombin_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
Urease complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.971
Femoral muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.841
PMC8104016-hcg-12-e002353-s006.xlsx-mTHP-1-LPS_Prom-Prom_Prom-GWAS-RefSeq_Name_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
CRCGN016_MCF10A.WT.HP_24H:C19	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	6.7273
intracellular membrane-bounded organelle	GO Cellular Component Annotations 2025	1.0	null
REH	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Nr2e1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	30.1706
lipid metabolism disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.10074
Exanthema	CTD Gene-Disease Associations	1.0	1.15763
Hypoglycemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.293
Plastid thylakoid membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.404
PHOX2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.3947
HCC2218	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.54805
intracellular organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.061704
Bgm	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.102
Cellulose synthase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.699
22RV1	CCLE Cell Line Gene Expression Profiles	1.0	1.94381
Precancerous Conditions	CTD Gene-Disease Associations	1.0	1.38807
Vascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.004
NCLN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.22194
Inflorescence meristem	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.747
Lignin network	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.775
BRD-K12513721	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.43199
CRCGN016_MCF10A.TP53.M_24H:P24	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.2645
CRCGN014_HEPG2_3H:N09	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.41867
PMC6826333__F1	PFOCR Pathway Figure Associations 2024	1.0	null
Colorectal cancer	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.952288
Honey sac	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.625
HCC1569	CCLE Cell Line Gene CNV Profiles	1.0	1.5659
SKBR3	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.0719
BRD-K24343968	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.04003
Subceruleus nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.47906
BRD-K29543978	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.88124
Myopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.11
IMR32	DepMap CRISPR Gene Dependency	1.0	2.16859
Degeneration of macula and posterior pole	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.215
IZ in dorsomedial parietal cortex (area 7m)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.911195
EGR1	ChEA Transcription Factor Targets	1.0	null
CRCGN015_MCF10A.WT.HP_24H:O11	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	7.0565
GSE238018_3_v_4_mxra8_human	RummaGEO Gene Perturbation Signatures	-1.0	null
BRD-K05969019	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.11912
PMC9385264-NIHMS1828071-supplement-8.xlsx-ESR1-gene_symbol_ESR1	Rummagene Transcription Factor Associations 2026	1.0	null
SH2D2A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.14153
thylakoid part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.560114
GSE154464_1_v_3_cdk6_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Flag leaf	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.713
peroxisome	GO Cellular Component Annotations 2025	1.0	null
Weight Loss	CTD Gene-Disease Associations	1.0	1.70306
BRD-K55884477	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.36291
BRD-A23193246	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.93431
GSE195513_2_v_1_cpeb1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Breast disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.14
BRD-K45272675	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.86508
GSE193177_1_v_0_st266_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
cell part	LOCATE Predicted Protein Localization Annotations	1.0	null
Fetalliver	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	1.55362
GSE217405_3_v_2_osimertinib_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
lung	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054239
Exocarp	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.683
BRD-K06264262	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.07877
GSE246053_4_v_2_hnf4a_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Kidney Calculi	DisGeNET Gene-Disease Associations	1.0	null
BRD-K68202226	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.31808
skeletal system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051806
intermediate stratum of r6Lim	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.0081
BRD-K59250830	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.41186
glycerol-3-phosphate dehydrogenase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.94
BRD-K20437312	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.4454
intermediate stratum of the VAP	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.04651
YAPC	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.875815
hsa-miR-128	TargetScan Predicted Conserved microRNA Targets	1.0	0.568687
ERA-27197147-CHIP-SEQ-ENDOMETRIOID-ADENOCARCINOMA-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
MIM complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.67
MIXL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.3899
CRCGN016_MCF10A.WT.HP_24H:P24	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.6663
within	GeneRIF Biological Term Annotations	1.0	null
EPHA4_drugactivation_229_GSE26523	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	1.0	1.54188
Gastrointestinal system disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.604
Hmga1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	25.44
BRD-K53443314	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.62304
primary alcohol metabolic process	GO Biological Process Annotations 2015	1.0	null
Arid3b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	16.7228
LU135	DepMap CRISPR Gene Dependency	1.0	9.75024
Chronic kidney disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.375
Hypocotyl	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.329
MEOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.5154
Viral infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.915
Vdr	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	16.6884
lateral part of r4B	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.03
PPARG-20176806-3T3-L1-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
oxoacid metabolic process	GO Biological Process Annotations 2015	1.0	null
ERG-20517297-VCAP-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
peroxisomal matrix	GO Cellular Component Annotations 2023	1.0	null
Tauopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.597
principal sensory nucleus of trigeminal nerve	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.08678
BRD-K70643771	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.51598
FMN binding	GO Molecular Function Annotations 2023	1.0	null
Leaf lamina	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.997
Gastrointestinal stromal tumor_Gastric Tissue_GSE15966	GEO Signatures of Differentially Expressed Genes for Diseases	-1.0	-1.93524
Cancer of thyroid_Thyroid_GSE5364	GEO Signatures of Differentially Expressed Genes for Diseases	-1.0	-2.79363
DMS 454	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.07003
BRD-K40126748	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.19813
OLIG2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.6044
disease of metabolism	GWASdb SNP-Disease Associations	1.0	0.222834
cell property	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.084148
BRD-K68086276	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.59205
BRD-A14183911	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.10915
Xanthine dehydrogenase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.111
EZH2	ENCODE Transcription Factor Targets	1.0	null
parvocellular part of the r9LRt	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.48283
3-(INDOL-3-YL) LACTATE	DrugBank Drug Targets	1.0	null
OVSAHO cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.552
Head and neck cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.164
Autoimmune disease of endocrine system	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.221
episupraoptic nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.1542
GSE152937_12_v_7_slc16a13_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
BRD-K33456231	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.71102
CRCGN012_HEPG2_24H:H15	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.7242
BRD-K25196723	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.07846
GSE161302,GSE161304_1_v_0_enzalutamide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
BRD-K84199148	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.49104
L-929 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.05
hsa-miR-3616-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
Intracellular organelle lumen	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
HCC1263	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.909488
HT-55	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10973
TE-11	GDSC Cell Line Gene Expression Profiles	1.0	1.89928
Pancreatic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.528
BRD-K71778797	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.76368
IRF8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.8766
CRCGN015_HEPG2_48H:O01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.4586
SUZ12-18555785-CHIP-SEQ-ESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
Primary hyperoxaluria type 3	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.476
ERG-20517297-VCAP-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
TCF7L1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	63.5967
FOXO4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.1483
MYC	ENCODE Transcription Factor Targets	1.0	null
SMC3-22415368-MEFS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
GSE163240_2_v_0_enzalutamide_human	RummaGEO Drug Perturbation Signatures	1.0	null
HOXB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.2423
EVX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.4202
Thoracic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.141
GSE158182_5_v_7_pnpla3_human	RummaGEO Gene Perturbation Signatures	-1.0	null
CMYC-18555785-CHIP-SEQ-ESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
SP in caudal subicular cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.16069
LMX1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.5418
small molecule binding	GO Molecular Function Annotations 2015	1.0	null
BL4037 (CORO1A)	NURSA Protein Complexes	1.0	null
intermediate stratum of r9Tr	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.72662
Memory Disorders	CTD Gene-Disease Associations	1.0	1.17497
photosynthetic membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.566338
TMEM59L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.54809
Duchenne muscular dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.307
Hypodermis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.78
intracellular membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.04532
Extracellular organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.224
paraventricular nucleus, dorsal part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.07393
Glyoxylate metabolism	WikiPathways Pathways 2024	1.0	null
17312329-SuppTable2	GeneSigDB Published Gene Signatures	1.0	null
GSE149075_6_v_5_foxa2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Reticuloendothelial system	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.54
FOXN3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.88783
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.813144
NB17	DepMap CRISPR Gene Dependency	1.0	11.0738
Plastid thylakoid	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.461
Atrophy	CTD Gene-Disease Associations	1.0	1.45273
CRCGN016_MCF10A.WT.HP_24H:F05	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.64614
nonconserved	GeneRIF Biological Term Annotations	1.0	null
BRD-K86584551	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.03938
NR1H2::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.8
CRCGN013_HEPG2_24H:I13	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.39354
BRD-K89932793	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.96736
GATA2_SH-SY5Y_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Obesity	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.497
GSE183251_1_v_3_cyp2c70_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
ESX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.4221
MED15	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.7141
SMAD4-21799915-A2780-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
GSE216538_1_v_6_mrs2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Stomach cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.211
hsa-miR-384	TargetScan Predicted Conserved microRNA Targets	1.0	0.389112
GSE110178_2_v_0_tranylcypromine_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
BRD-K45058172	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.05741
Intrinsic component of mitochondrial membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.938
periventricular stratum of ITTh	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.96242
Metabolism of amino acids and derivatives	Reactome Pathways 2024	1.0	null
BRD-K44458042	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.03789
BRD-K81665173	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.51306
Bacterial nucleoid	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.659
NG-108-15 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.588
MAF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.8008
SCA1_Knock-in_GDS1756_234_mouse_Forebrain tissue - 12 weeks of age	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
Lhx8	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	22.6634
Neurobehavioral Manifestations	CTD Gene-Disease Associations	1.0	1.70491
Husk	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.677
Kidney renal papillary cell carcinoma_KIRP_TCGA-BQ-7059-11A-01R-1965-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE169713,GSE169715_1_v_2_tert_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Learning Disorders	CTD Gene-Disease Associations	1.0	1.6206
intermediate stratum of CoPD	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.13795
BRD-K86946907	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.58961
magnocellular (medial) subparafascicular nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.5513
Photosynthetic membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.213
mantle zone of PcPD	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.52652
NCI-H1299	GDSC Cell Line Gene Expression Profiles	-1.0	-1.43977
Endocrine gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
NCIH1944	CCLE Cell Line Gene Expression Profiles	1.0	1.6828
BRD-K23333192	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.63016
Bone inflammation disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.479
plastid-encoded plastid RNA polymerase complex A	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.78
ZNF558	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	82.0534
SETDB1_KO_GSE40296_7_mouse_brain (telencephalon)	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
r2 part of principal trigeminal sensory nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.03
superficial stratum of r2Tr	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.03077
other source	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.065371
BRD-K37544873	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.1389
Cell cortex region	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.493
intermediate stratum of r8Tr	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.28218
BRD-K36855468	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.04913
Midline group of the dorsal thalamus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.07172
upper basal perifornical nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.02495
abnormal testosterone level	GWASdb SNP-Phenotype Associations	1.0	0.93106
NKX6-1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.5141
BRD-K24350933	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.24837
Nascent polypeptide-associated complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.384
VCAP	CCLE Cell Line Gene Expression Profiles	1.0	2.65492
anterior (rostral) cingulate (medial prefrontal) cortex_16 pcw_M_12837	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.87951
Massive Hepatic Necrosis	CTD Gene-Disease Associations	1.0	1.07553
Tear	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.832
H3K4me3_liver_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
CRCGN016_MCF10A.TP53.M_24H:C20	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.80805
Heart Diseases	CTD Gene-Disease Associations	1.0	1.25713
cerebellum	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-1.51537
GSE136742,GSE136744_0_v_3_setd2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
orbital frontal cortex_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.23167
CRCGN015_HEPG2_48H:B19	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.06876
ventrolateral prefrontal cortex_24 pcw_M_12288	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-2.3305
GSE217694_3_v_2_pold1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
IRF9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.8493
Adrenocortical carcinoma_ACC_TCGA-OR-A5KT-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.4016
BRD-K20745677	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.18653
Corolla	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.029
BRD-K87080232	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.2671
BRD-K20847739	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.14377
r2 part of nucleus subcoeruleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.53051
Acetolactate synthase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.409
adrenal gland	HPA Tissue Protein Expression Profiles	1.0	0.806843
Lactose intolerance	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.004
Plant form	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.353
hsa-miR-4262	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
Rlc	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.223
malaria	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.342739
glycine cleavage complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.202346
Perturb_10719_KO_Nrf2_SRP336215	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	2.72031
BRD-K90697693	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.05303
Metabolic acidosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.467
whole plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.52617
Corona	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.875
BRD-K30910725	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.04319
fatty acid oxidation	GO Biological Process Annotations 2023	1.0	null
protein body	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.24894
Mesothelioma_MESO_TCGA-SH-A7BH-01A-11R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Trichome	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.252
BRD-K47200630	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.59483
Sox11	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	119.832
GSE162276_2_v_0_pparg_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Acquired metabolic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.701
Saliva	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.507
PTEN_01_302	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	2.40742
CRCGN015_HEPG2_48H:O10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	6.58563
kidney disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.990222
vx2	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.954
Nfatc2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	35.3439
BRD-K47441131	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.65886
BRD-K18077898	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.72098
Myeloid leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.066
GSE200352_1_v_8_pparg_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Perturb_14703_KO_Trp53|Kras_ERP118222	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-3.93104
BRD-K61168922	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.32975
SUIT2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.54559
coronary artery disease	GWASdb SNP-Disease Associations	1.0	0.700665
Storage root	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.518
H3K4me1_HepG2_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
BRD-K50157358	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.02765
CRCGN015_MCF10A_48H:C19	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.76715
NCIH716	CCLE Cell Line Gene CNV Profiles	-1.0	-1.51161
Ossification of the posterior longitudinal ligament of spine	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.821
Prostate adenocarcinoma_PRAD_TCGA-HC-7078-01A-11R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Glyoxylate metabolism and glycine degradation	Reactome Pathways 2024	1.0	null
Lung Neoplasms	CTD Gene-Disease Associations	1.0	1.19113
AGS cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.819
kidney	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.837414
BRD-K11227160	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.29399
primary alcohol catabolic process	GO Biological Process Annotations 2015	1.0	null
GSE163240_3_v_0_enzalutamide_human	RummaGEO Drug Perturbation Signatures	1.0	null
Jugular vein	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.042
Subcutaneous tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.825
GSE226285_3_v_1_nr0b1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
tretinoin-384	CMAP Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
glycolate catabolic process	GO Biological Process Annotations 2025	1.0	null
five	GeneRIF Biological Term Annotations	1.0	null
GSE88819_7_v_8_tug1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
head and face region of M1	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-2.03926
disease	GWASdb SNP-Disease Associations	1.0	0.045393
retromer, cargo-selective complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.72
r2 part of basolateral reticular formation	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.06782
Acquired immunodeficiency syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.082
hsa-miR-3130-3p	TargetScan Predicted Conserved microRNA Targets	1.0	0.175726
GSE216538_7_v_2_mrs2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Thoracic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.138
very-long-chain-(s)-2-hydroxy-acid oxidase activity	GO Molecular Function Annotations 2015	1.0	null
BRD-K27971671	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.22409
mp10	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.419
BRD-K61278167	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.10023
Pollen tube	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.601
outer CP in midcingulate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.23621
BRD-K22071228	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.03196
peroxisomal part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.12654
Leaf epidermis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.986
EP300_SK-N-SH_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BRD-A08759443	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.42639
BRD-K67525206	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.68458
hsa-miR-4722-3p	TargetScan Predicted Conserved microRNA Targets	1.0	0.265648
autosomal recessive disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.053011
glyoxylate oxidase activity	GO Molecular Function Annotations 2023	1.0	null
dorsal part of PcP	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.52652
GSE130396_0_v_2_braf_human	RummaGEO Gene Perturbation Signatures	1.0	null
intracellular membrane-bounded organelle	GO Cellular Component Annotations 2023	1.0	null
STAT4	MotifMap Predicted Transcription Factor Targets	1.0	null
primary somatosensory cortex (area S1, areas 3,1,2)_13 yrs_F_12831	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.927189
Nervous system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.613
Central amygdalar nucleus, medial part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.70222
PMC6151487__F5	PFOCR Pathway Figure Associations 2023	1.0	null
DU4475	DepMap CRISPR Gene Dependency	1.0	2.15392
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.7994
BRD-K08829593	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.15233
Kidney renal papillary cell carcinoma_KIRP_TCGA-BQ-5882-11A-01R-1592-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
KS1	CCLE Cell Line Gene Expression Profiles	-1.0	-1.76487
Chromoplast	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.682
mesophyll	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.5415
Liver	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	2.2603
GSE162276_4_v_0_pparg_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
BRD-K87000197	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.75283
periventricular stratum of r2Ve	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.41209
GATA2_endothelial cell of umbilical vein_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PMC9068765-41467_2022_29960_MOESM14_ESM.xlsx-TP53-Unnamed_2_TP53	Rummagene Transcription Factor Associations 2026	1.0	null
RUNX2	ChEA Transcription Factor Targets	1.0	null
Hypertension	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.326
abnormality of metabolism/homeostasis	GWASdb SNP-Phenotype Associations	1.0	1.21853
inner SZ in superolateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-2.0476
496100317_FWM_no dementia_no TBI_81_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.16141
Aleurone layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.63
Hepatoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.777
Cholesterol	dbGAP Gene-Trait Associations	1.0	0.079278
GSE202434,GSE202438_2_v_0_talazoparib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
leukodystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.503058
BRD-K32699895	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.2432
GSE157777_2_v_3_foxa3_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
ARID3A_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MAFF_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GSE207914_1_v_7_nudt7_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Ferroxidase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.878
MDAMB175VII	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.53582
YY1	ChEA Transcription Factor Targets	1.0	null
GATA3-21867929-CD8-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
BRD-K77177732	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.01527
A549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.875658
BRD-K37379978	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.97105
GSE110178_5_v_0_tranylcypromine_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
Polyneuropathy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.04
PTHrP_KD_GDS1664_71_human_MDA-MB-231 breast cancer cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
CRCGN014_HEPG2_24H:A08	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.0436
decreased testosterone in males	GWASdb SNP-Phenotype Associations	1.0	0.93106
BRD-K93894185	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.03734
BRD-K12397820	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.5678
CRCGN012_HEPG2_24H:C20	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.51698
YMB-1-E	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.942866
FOXA1-21572438-LNCAP-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Hyperuricemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.248
COV362	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.01201
HOXA10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.4278
periventricular stratum of m2Lim	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.56075
BRD-K12836153	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.61956
lipid oxidation	GO Biological Process Annotations 2015	1.0	null
Primary hyperoxaluria type 2	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.688
I band	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.129
r8 part of basolateral reticular formation	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.28757
AR-27270436-VCAP-HUMAN-PROSTATE-CARCINOMA	ChEA Transcription Factor Targets 2022	1.0	null
MECO complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.651
BRD-K75814223	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.02249
CAV3_KO_GDS3533_357_mouse_mammalian glands	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
BRD-K21253219	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.68987
BRD-K34343777	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.33732
Supportive connective tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.193
achalasia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.647743
GSE147056_0_v_1_actl6b_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
principal pretectal nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.22406
glycolate catabolic process	GO Biological Process Annotations 2023	1.0	null
GSE241036_4_v_2_ethanol_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-EP-A3RK-11A-11R-A22L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CRCGN009_HEPG2_24H:L07	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.6547
DLX5_Deficiency_GDS4443_355_mouse_E10 embryos	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
HNRNPAB	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.35582
r5 part of basolateral reticular formation	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.58954
BRD-K55311609	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.03037
BRD-A73590800	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.40087
BRD-K77727343	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.29318
H2AFZ_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BRD-A98099470	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.08595
GSE165647_5_v_3_cry2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
BRD-K57688676	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.10066
Shox2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	20.4019
GSE192663_1_v_2_acly_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
BRD-K33102216	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.63992
MAFG::NFE2L1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.4151
Reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.815
Microbody	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
BRD-K55835264	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.10899
GSE155031_5_v_2_dextran_human	RummaGEO Drug Perturbation Signatures	1.0	null
Pole plasm	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.196
VAX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.4588
GSE217441,GSE217443_1_v_0_ivosidenib_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
CardiacMyocytes	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	1.13411
BRD-K42453497	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.50043
FLI1::DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.8125
OVMANA	CCLE Cell Line Gene Expression Profiles	1.0	1.53443
GSE207914_2_v_7_nudt7_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Dried cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.556
features	GeneRIF Biological Term Annotations	1.0	null
NMS complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.912
BRD-K20073772	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.59399
Nephrolithiasis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.894
PMC11749115-loae020_suppl_Supplementary_Table_S2.xlsx-CHOP-high-gene_DDIT3	Rummagene Transcription Factor Associations 2026	1.0	null
Heart	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	1.00829
HCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.909488
Bile	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.755
Glyoxylate and dicarboxylate metabolism	KEGG Pathways 2026	1.0	null
central nuclear group	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.881534
Nephrolithiasis	DisGeNET Gene-Disease Associations	1.0	null
GSE88819_6_v_4_tug1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PMC3500769-srep00875-s3.xls-AP1-Time_1_JUN	Rummagene Transcription Factor Associations 2026	1.0	null
Cell Transformation, Neoplastic	CTD Gene-Disease Associations	1.0	1.26452
BRD-K63654001	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.42782
PMC5214989__F2	PFOCR Pathway Figure Associations 2024	1.0	null
Hepatocellular carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.558
GSE210655_3_v_2_cisplatin_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
Familial chylomicronemia syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.344
envelope	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.111538
RUNX1-21571218-MEGAKARYOCYTES-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
BRD-K23535862	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.04777
nctcclone929	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.924
USF2_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BRD-K57937572	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.35058
PMC8519939-41525_2021_248_MOESM5_ESM.xlsx-NFE2L2_V2-Ensemble_gene_ID_NFE2L2	Rummagene Transcription Factor Associations 2026	1.0	null
BRD-K45185240	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.90277
BRD-K90429860	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.05618
cell part	GO Cellular Component Annotations 2015	1.0	null
CRCGN015_MCF10A.WT.HP_24H:F16	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.5972
SPARC_Deficiency_GDS3636_524_mouse_Lens epithelium	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
Prenatal Exposure Delayed Effects	CTD Gene-Disease Associations	1.0	1.78454
BRD-K10847374	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.30363
NR6A1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.2853
basolateral amygdaloid nucleus, anterior part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.01954
High grade glioma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.541
leaf lamina	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.55019
GSE202434,GSE202438_2_v_11_talazoparib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
CRCGN015_MCF10A_48H:P13	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.17984
GSE235701,GSE261434_2_v_3_enasidenib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
SMARCA4	ChEA Transcription Factor Targets	1.0	null
Glycolic acid	HMDB Metabolites of Enzymes	1.0	null
Hepatitis B	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.321
Sox1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	27.4781
GSE129389_0_v_4_tropifexor_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
BRD-K44779507	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.87996
Breast cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.022
epithelial-stromal TGFBI dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.283
fatty acid alpha-oxidation	GO Biological Process Annotations 2023	1.0	null
GSE130396_0_v_2_neratinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
Periderm	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.916
GSE168596_2_v_3_adiponectin_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
Cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.365
Hemoglobin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.235
CRCGN012_HEPG2_24H:L03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.40115
Human immunodeficiency virus infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.148
PRRX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.4125
IGROV-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GSE216538_0_v_2_mrs2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PMC5932012-41467_2018_4180_MOESM18_ESM.xlsx-Table_19-GSEA_Gene_lists-Zuber_Myb_KD_UP_HUMAN_AR	Rummagene Transcription Factor Associations 2026	1.0	null
PRRX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.9318
microbody part	GO Cellular Component Annotations 2015	1.0	null
Alpha-hydroxy acid dehydrogenase, FMN-dependent	InterPro Predicted Protein Domain Annotations	1.0	null
VAX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.6299
Serum Albumin Measurement	DisGeNET Gene-Phenotype Associations	1.0	null
VMRCRCW	CCLE Cell Line Gene CNV Profiles	-1.0	-2.04546
SOX10	MotifMap Predicted Transcription Factor Targets	1.0	null
Sarcomere	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.504
vertebrate muscular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05299
E2F3_KD_GDS4094_448_mouse_Mammary tumors (Myc-induced)	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
Extracellular vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.225
c83	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.934
HOXB2::ELK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.2581
SNU324	CCLE Cell Line Gene CNV Profiles	-1.0	-1.75966
Adipose - Visceral (Omentum)	GTEx Tissue Gene Expression Profiles 2023	1.0	7.21238
protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.04433
EVX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.5431
outer membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.136885
organelle	GO Cellular Component Annotations 2015	1.0	null
BRD-K99833695	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.43544
BRD-K15291808	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.05025
POU3F2	ChEA Transcription Factor Targets	1.0	null
GSE237040_6_v_5_notch3_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
UWB1289	DepMap CRISPR Gene Dependency	1.0	5.2163
NCIH1792	CCLE Cell Line Gene CNV Profiles	-1.0	-1.61831
CRCGN017_MCF10A.WT.HP_24H:K23	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.30765
SNU1076	CCLE Cell Line Gene CNV Profiles	1.0	2.90211
BRD-K27754030	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.28891
Daudi	GDSC Cell Line Gene Expression Profiles	1.0	1.72062
Lateral reticular nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.06978
organelle lumen	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.120189
arteriosclerosis	GWASdb SNP-Disease Associations	1.0	0.700665
NB7	COSMIC Cell Line Gene Mutation Profiles	1.0	null
intermediate	GeneRIF Biological Term Annotations	1.0	null
BRD-K77320034	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.33841
APLN_KO_GDS3228_601_mouse_Heart	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
Neuropathy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.468
Lymphoma_burkitts(Raji)	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	1.0101
CRCGN015_MCF10A.WT.HP_24H:O12	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.39942
Glyoxylic acid	HMDB Metabolites of Enzymes	1.0	null
BRD-K50114736	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.12907
Osteogenic cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.801
BRD-K90594901	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.32353
Merocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.246
PMC11384093-mmc1.xlsx-886-drug_target-VDR_VDR	Rummagene Transcription Factor Associations 2026	1.0	null
Nanog	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	17.0368
plant embryo	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.68653
GSE129389_0_v_6_tropifexor_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
residues	GeneRIF Biological Term Annotations	1.0	null
PMC3500769-srep00875-s3.xls-GATA3-Time_24_GATA3	Rummagene Transcription Factor Associations 2026	1.0	null
PU1-27457419-CHIP-SEQ-LIVER-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
CEBPB-20176806-MACROPHAGES-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
GSE183251_4_v_0_cyp2c70_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
BRD-K99638698	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.30009
cell part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.899962
Latex	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.368
hsa-miR-889	TargetScan Predicted Conserved microRNA Targets	1.0	0.187098
Hyperoxaluria	DisGeNET Gene-Disease Associations	1.0	null
GSE218356_1_v_0_cited1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Brain Lower Grade Glioma_LGG_TCGA-DU-7012-01A-11R-2027-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Gestational diabetes	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.275
Lower respiratory tract disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.812
RISC-loading complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.667
PMC6599263-13073_2019_654_MOESM2_ESM.xlsx-CAR1_tsv-gene_name_NR1I3	Rummagene Transcription Factor Associations 2026	1.0	null