association	dataset	threshold value	standardized value
EFM-19	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1258
all	GeneRIF Biological Term Annotations	1.0	null
hematopoietic system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.063204
there	GeneRIF Biological Term Annotations	1.0	null
V, left, lateral hemisphere	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.11911
inferior colliculus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.892096
antigens	GeneRIF Biological Term Annotations	1.0	null
GSE138741,GSE138743_0_v_1_lin28b_human	RummaGEO Gene Perturbation Signatures	1.0	null
pregnancy loss	GAD Gene-Disease Associations	1.0	null
clathrin-coated endocytic vesicle	GO Cellular Component Annotations 2023	1.0	null
GSE202434,GSE202438_12_v_1_talazoparib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE120612_7_v_0_etoposide_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE215086_4_v_7_batf_human	RummaGEO Gene Perturbation Signatures	-1.0	null
regulation of CD4-positive, alpha-beta T cell activation	GO Biological Process Annotations 2025	1.0	null
GSE94849_1_v_2_pinometostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE186440,GSE186443_1_v_7_daxx_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE253795_1_v_0_alkbh5_human	RummaGEO Gene Perturbation Signatures	1.0	null
HCT116	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.46457
polymorphic layer of rostral subiculum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.74362
membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
GET complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.16
GSE215086_5_v_6_batf_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE130956_0_v_1_icaritin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE172016_2_v_1_paclitaxel_human	RummaGEO Drug Perturbation Signatures	1.0	null
Larval cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.542
GSE193351_1_v_3_ruxolitinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
Enhanceosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.003
GSE207135_2_v_0_sod2_human	RummaGEO Gene Perturbation Signatures	1.0	null
PMC7310461__F3	PFOCR Pathway Figure Associations 2024	1.0	null
hsa-miR-1972	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
CPC-N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00565
GSE190555,GSE190557_2_v_0_chd4_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE173232_1_v_0_sf3b1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE175787_11_v_10_rhoc_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE162892_3_v_2_sox9_human	RummaGEO Gene Perturbation Signatures	1.0	null
central gray of the pons, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	2.74656
KIF23	Pathway Commons Protein-Protein Interactions	1.0	null
TTT complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.625
Aspartate aminotransferase levels	GWAS Catalog SNP-Phenotype Associations 2025	1.0	2.30969
GSE151612_0_v_3_pracinostat_human	RummaGEO Drug Perturbation Signatures	-1.0	null
abducens nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.15422
endosome	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
ERF::FOXO1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.3715
Immunoglobulin-like fold	InterPro Predicted Protein Domain Annotations	1.0	null
vestibular nuclei, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.986354
antigen processing and presentation	GO Biological Process Annotations 2015	1.0	null
JY cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.696
HMY-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.86626
I-II	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.929405
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.369747
CRCGN016_MCF10A.TP53.M_24H:K08	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-3.28525
organism form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052312
Leukemia, Lymphocytic, Acute, L1	HuGE Navigator Gene-Phenotype Associations	1.0	null
female reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051353
GSE94849_1_v_5_pinometostat_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE84678,GSE93902_1_v_2_bcl11b_human	RummaGEO Gene Perturbation Signatures	1.0	null
lower	GeneRIF Biological Term Annotations	1.0	null
head	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
MWP complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.634
COLO 792	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.53934
Helper T-lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.967
Abruptio Placentae	HuGE Navigator Gene-Phenotype Associations	1.0	null
SUM 52PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.57429
TWIST1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.7312
anterior orbital gyrus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.97229
gastrointestinal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.045423
confirmed	GeneRIF Biological Term Annotations	1.0	null
embryo	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051785
GSE216043_3_v_6_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE111061_1_v_0_tofacitinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE127916_1_v_0_nras_human	RummaGEO Gene Perturbation Signatures	-1.0	null
myositis	GeneRIF Biological Term Annotations	1.0	null
lysosome	GO Cellular Component Annotations 2023	1.0	null
KIF3B	Pathway Commons Protein-Protein Interactions	1.0	null
tcell	GeneRIF Biological Term Annotations	1.0	null
bone marrow	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
dr3dq2	GeneRIF Biological Term Annotations	1.0	null
MHC classes I/II-like antigen recognition protein	InterPro Predicted Protein Domain Annotations	1.0	null
LOXIMVI_SKIN	CCLE Cell Line Proteomics	1.0	2.95536
GSE162892_4_v_0_isox_human	RummaGEO Drug Perturbation Signatures	1.0	null
SW1417	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.35858
HCC1419	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.849048
GSE203408_0_v_3_curcumin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE200388_0_v_1_gemin5_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE142210_3_v_6_panobinostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE234155_7_v_1_nfix_human	RummaGEO Gene Perturbation Signatures	1.0	null
Aspirin Exacerbated Respiratory Disease	DisGeNET Gene-Disease Associations	1.0	null
clathrin-coated endocytic vesicle membrane	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
autoimmune disease of endocrine system	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.733811
neurological	GAD High Level Gene-Disease Associations	1.0	0.293278
intracellular membrane-bounded organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
trans-golgi network membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Membranous Glomerulonephritis	DisGeNET Gene-Disease Associations	1.0	null
tnf	GeneRIF Biological Term Annotations	1.0	null
bone marrow cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.06294
intracellular part	GO Cellular Component Annotations 2015	1.0	null
EBV-LCL cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.112
evaluation	GeneRIF Biological Term Annotations	1.0	null
integral component of endoplasmic reticulum membrane	GO Cellular Component Annotations 2015	1.0	null
ZNF354A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	55.4111
layer IIIu of area 35c	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.85095
Lysosome	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
GSE120612_6_v_0_etoposide_human	RummaGEO Drug Perturbation Signatures	1.0	null
Graves' disease	GWAS Catalog SNP-Phenotype Associations 2025	1.0	6.4699
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.17889
medial geniculate complex, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.9744
KP2	Achilles Cell Line Gene Essentiality Profiles	1.0	1.24805
GSE126463_1_v_3_pomalidomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Gait speed in old age	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.652288
A-CA-04-2009(H1N1)_30Hour_None_GSE37571	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.66721
Integral component of endoplasmic reticulum membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.873
endocrine system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.230409
15656903-SuppTable1	GeneSigDB Published Gene Signatures	1.0	null
GSE228106_0_v_4_paclitaxel_human	RummaGEO Drug Perturbation Signatures	1.0	null
Vacuole	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
GSE111247_0_v_6_temozolomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
antigen processing and presentation of peptide antigen via MHC class II	GO Biological Process Annotations 2025	1.0	null
Hip circumference adjusted for BMI	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.769897
organelle membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
connecting stalk	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.086885
HIV Infections	HuGE Navigator Gene-Phenotype Associations	1.0	null
MHC class II, beta chain, N-terminal	InterPro Predicted Protein Domain Annotations	1.0	null
Interferon gamma signaling	Reactome Pathways 2014	1.0	null
precentral gyrus, right, inferior lateral aspect of gyrus	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.962362
Sarcoma, Kaposi	HuGE Navigator Gene-Phenotype Associations	1.0	null
GSE199204,GSE211619_4_v_3_glutamine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
496100484_FWM_no dementia_no TBI_86_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.1659
PDCD1	Pathway Commons Protein-Protein Interactions	1.0	null
KIF22	Pathway Commons Protein-Protein Interactions	1.0	null
myositis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.636315
Ovarian Neoplasm	DisGeNET Gene-Disease Associations	1.0	null
VZ in superolateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.44784
reduce	GeneRIF Biological Term Annotations	1.0	null
hemorrhagic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.303781
Idiopathic Membranous Glomerulonephritis	DisGeNET Gene-Disease Associations	1.0	null
PAG1	Pathway Commons Protein-Protein Interactions	1.0	null
bounding membrane of organelle	GO Cellular Component Annotations 2023	1.0	null
CRCGN016_MCF10A.TP53.M_24H:I11	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.97665
Vermiform appendix	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.033
three	GeneRIF Biological Term Annotations	1.0	null
B95-8 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.988
integral component of lumenal side of endoplasmic reticulum membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
GSE174498,GSE174500_3_v_8_asparaginase_human	RummaGEO Drug Perturbation Signatures	1.0	null
Sarcoidosis	DisGeNET Gene-Disease Associations	1.0	null
GSE213228_1_v_5_irak2_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE77108_5_v_1_saha_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE157296,GSE157298_4_v_3_kbtbd4_human	RummaGEO Gene Perturbation Signatures	1.0	null
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
class	GeneRIF Biological Term Annotations	1.0	null
pyramidal layer of caudal subiculum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.34009
antibodies	GeneRIF Biological Term Annotations	1.0	null
GSE172189_0_v_1_venetoclax_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Guillain-Barre Syndrome	HuGE Navigator Gene-Phenotype Associations	1.0	null
Bronchiolitis	HuGE Navigator Gene-Phenotype Associations	1.0	null
flower	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.072678
Golgi membrane	GO Cellular Component Annotations 2025	1.0	null
NR1D1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.7157
influence	GeneRIF Biological Term Annotations	1.0	null
HPAC	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.919254
GSE213588_8_v_0_trametinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
Immunoglobulin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.207
Signal recognition particle, endoplasmic reticulum targeting	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.806
membrane part	GO Cellular Component Annotations 2015	1.0	null
zona incerta, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.10074
NCI-H82	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04889
Blood	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Interferon gamma signaling	Reactome Pathways 2024	1.0	null
macromolecular complex	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
precentral gyrus, right, superior lateral aspect of gyrus	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.01804
Graft vs Host Disease	HuGE Navigator Gene-Phenotype Associations	1.0	null
positive regulation of immune system process	GO Biological Process Annotations 2025	1.0	null
golgi apparatus	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
sporadic	GeneRIF Biological Term Annotations	1.0	null
fetus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058488
late endosome membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
GSE146687_2_v_5_eribulin_human	RummaGEO Drug Perturbation Signatures	1.0	null
monocyte-derived dendritic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.919
GSE158834_0_v_5_palmitic acid_human	RummaGEO Drug Perturbation Signatures	1.0	null
leukocyte	GeneRIF Biological Term Annotations	1.0	null
hladr3positive	GeneRIF Biological Term Annotations	1.0	null
Cytokine Signaling in Immune system	Reactome Pathways 2024	1.0	null
GSE169152_3_v_7_ibrutinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
CRCGN010_HEPG2_24H:G14	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.9503
IRF5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.8467
hepatobiliary disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.076719
G84452RH	GlyGen Glycosylated Proteins	1.0	null
GSE120612_7_v_2_etoposide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
SCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07825
16597596-TableS2-1	GeneSigDB Published Gene Signatures	1.0	null
peripheral blood	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
GSE168097_0_v_2_epinephrine_human	RummaGEO Drug Perturbation Signatures	1.0	null
ZAP70	Pathway Commons Protein-Protein Interactions	1.0	null
precuneus, right, inferior lateral bank of gyrus	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.0245
PD-1 signaling	Reactome Pathways 2014	1.0	null
pre-T-lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.508
IM-95	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.08543
GSE134375_4_v_2_stat3_human	RummaGEO Gene Perturbation Signatures	1.0	null
antirola	GeneRIF Biological Term Annotations	1.0	null
KIF5B	Pathway Commons Protein-Protein Interactions	1.0	null
IgG immunoglobulin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.708
hsa-miR-3197	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
mycophenolate mofetil_homo sapiens_gpl6255_gse13922	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
internal female genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.0525
GSE162892_4_v_5_isox_human	RummaGEO Drug Perturbation Signatures	-1.0	null
midbrain reticular formation, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.25923
outer SZ in dorsomedial extrastriate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.83445
connective tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051836
GSE174498,GSE174500_3_v_7_asparaginase_human	RummaGEO Drug Perturbation Signatures	1.0	null
GP5D	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.887316
Generation of second messenger molecules	Reactome Pathways 2024	1.0	null
Set3 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.689
lumenal side of endoplasmic reticulum membrane	GO Cellular Component Annotations 2025	1.0	null
Dendritic cell	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	2.588
GSE142210_9_v_10_panobinostat_human	RummaGEO Drug Perturbation Signatures	-1.0	null
17346539-Table3	GeneSigDB Published Gene Signatures	1.0	null
1D09C3	DGIdb Drug Targets 2026	1.0	4.411
CRCGN011_HEPG2_24H:F03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.4109
GSE213588_8_v_2_trametinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
Rheumatoid arthritis	KEGG Pathways 2026	1.0	null
Type I diabetes mellitus	KEGG Pathways 2026	1.0	null
PMC5130036-oncotarget-07-40690-s006.csv--AR_signature_for_GSEA_AR	Rummagene Transcription Factor Associations 2026	1.0	null
STAT1	JASPAR Predicted Transcription Factor Targets	1.0	null
GSE116810_2_v_0_selinexor_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE77108_5_v_9_saha_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Heparin-Induced Thrombocytopenia	DisGeNET Gene-Disease Associations	1.0	null
pairs	GeneRIF Biological Term Annotations	1.0	null
GSE244518,GSE244520_1_v_0_dnmt3b_human	RummaGEO Gene Perturbation Signatures	1.0	null
Supportive connective tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.761
Vesicle membrane	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
Hepatitis B (viral clearance)	GWAS Catalog SNP-Phenotype Associations 2025	1.0	1.6699
vacuolar part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
Posterior spinal root	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.568
newborns	GeneRIF Biological Term Annotations	1.0	null
RT112	Achilles Cell Line Gene Essentiality Profiles	1.0	1.01015
contribute	GeneRIF Biological Term Annotations	1.0	null
EGFR mutation-positive lung adenocarcinoma	GWAS Catalog SNP-Phenotype Associations 2025	1.0	1.6301
endosomal part	GO Cellular Component Annotations 2015	1.0	null
DYNLL2	Pathway Commons Protein-Protein Interactions	1.0	null
inflorescence	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.069455
thrombocytopenia	GeneRIF Biological Term Annotations	1.0	null
psych	GAD High Level Gene-Disease Associations	1.0	0.293278
GSE213588_10_v_2_trametinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
KIF4B	Pathway Commons Protein-Protein Interactions	1.0	null
17192395-TableS2b	GeneSigDB Published Gene Signatures	1.0	null
lymphadenitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.384451
GSE238018_1_v_4_mxra8_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Arthritis, Juvenile Rheumatoid	HuGE Navigator Gene-Phenotype Associations	1.0	null
Endocrine pancreas	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.298
GSE147626_2_v_0_glutathione_human	RummaGEO Drug Perturbation Signatures	1.0	null
Endoplasmic reticulum palmitoyltransferase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.088
CRCGN017_MCF10A.TP53.M_24H:E08	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.25758
Pollen	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.232
Side of membrane	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
PMC7165319-3896263.f6.xlsx-List_of_AA_outlier_pool-AA_outlier_pool_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
clathrin-coated endocytic vesicle membrane	GO Cellular Component Annotations 2015	1.0	null
Hallucinations	HuGE Navigator Gene-Phenotype Associations	1.0	null
endoplasmic reticulum membrane	GO Cellular Component Annotations 2023	1.0	null
em2	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.826
inner SZ in posterior parahippocampal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-2.92696
Narcolepsy	HuGE Navigator Gene-Phenotype Associations	1.0	null
lysosome	LOCATE Predicted Protein Localization Annotations	1.0	null
immune system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.513802
GSE206729_3_v_1_trps1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE126463_6_v_3_pomalidomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE163275_1_v_0_irf8_human	RummaGEO Gene Perturbation Signatures	-1.0	null
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
korean	GeneRIF Biological Term Annotations	1.0	null
NCIH2052	Achilles Cell Line Gene Essentiality Profiles	1.0	1.25796
amide binding	GO Molecular Function Annotations 2015	1.0	null
infection	GAD High Level Gene-Disease Associations	1.0	0.303208
susceptibility	GeneRIF Biological Term Annotations	1.0	null
CRCGN016_MCF10A.WT.HP_24H:P14	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.17679
USF2	JASPAR Predicted Transcription Factor Targets	1.0	null
GSE224131_2_v_1_mafb_human	RummaGEO Gene Perturbation Signatures	-1.0	null
MHC protein complex	GO Cellular Component Annotations 2023	1.0	null
outer SZ in medial temporal-occipital cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.853127
SARS-CoV_48Hour_23935999_GSE47961	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.73762
SG in midlateral extrastriate cortex (area 19)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.04709
496100577_FWM_probable Alzheimer's disease_TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.03602
Hypercalcemia	DisGeNET Gene-Disease Associations	1.0	null
Viscus	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
positive regulation of T cell mediated immune response to tumor cell	GO Biological Process Annotations 2025	1.0	null
Marrow	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.155
Ganglion	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.307
GSE158834_11_v_5_palm_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE157894_1_v_0_cystine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Diencephalon	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.173
chr6_33080765_C_T_b38	GTEx eQTL 2025	1.0	4.86533
KLC2	Pathway Commons Protein-Protein Interactions	1.0	null
hsa-miR-320e	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
lateral orbital frontal cortex (area 12/47)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.899094
heterozygosity	GeneRIF Biological Term Annotations	1.0	null
496100542_PCx_no dementia_no TBI_82_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	-1.0	-2.0096
B-lymphocyte cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.882
hsa-miR-494	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.13535
positive regulation of immune response to tumor cell	GO Biological Process Annotations 2025	1.0	null
CRCGN015_HEPG2_48H:I06	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.94989
GSE169205_0_v_6_sirt5_human	RummaGEO Gene Perturbation Signatures	-1.0	null
cardiovascular	GAD High Level Gene-Disease Associations	1.0	0.298214
CRCGN016_MCF10A.TP53.M_24H:P24	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-4.18155
colitis	GeneRIF Biological Term Annotations	1.0	null
GSE123943_2_v_0_sox1_human	RummaGEO Gene Perturbation Signatures	1.0	null
cytoplasmic part	LOCATE Predicted Protein Localization Annotations	1.0	null
CRCGN017_MCF10A.WT.HP_24H:N03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.15709
protein-cysteine S-palmitoyltransferase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.088
GSE139455_4_v_5_stat3_human	RummaGEO Gene Perturbation Signatures	1.0	null
SK-MEL-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.085
GSE158834_2_v_6_palmitic acid_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE210870_0_v_1_snai1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE213588_9_v_3_trametinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
family	GeneRIF Biological Term Annotations	1.0	null
GSE168097_3_v_2_epinephrine_human	RummaGEO Drug Perturbation Signatures	1.0	null
antigen receptor-mediated signaling pathway	GO Biological Process Annotations 2015	1.0	null
researchers	GeneRIF Biological Term Annotations	1.0	null
very	GeneRIF Biological Term Annotations	1.0	null
GSE162892_3_v_0_sox9_human	RummaGEO Gene Perturbation Signatures	1.0	null
IgA nephropathy	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.630103
sicily	GeneRIF Biological Term Annotations	1.0	null
GSE202434,GSE202438_15_v_14_talazoparib_human	RummaGEO Drug Perturbation Signatures	1.0	null
blood vessel	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054081
endocytic vesicle membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
ABC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.70663
many	GeneRIF Biological Term Annotations	1.0	null
membrane	LOCATE Curated Protein Localization Annotations	1.0	null
marrow cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.067612
GSE216043_11_v_1_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
autoimmune diseases	GAD Gene-Disease Associations	1.0	null
B-lymphoblastoid cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.853
MHC class II protein complex	GO Cellular Component Annotations 2025	1.0	null
GSE174498,GSE174500_2_v_1_asparaginase_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Hematologic Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
Chronic Disease	HuGE Navigator Gene-Phenotype Associations	1.0	null
carrying	GeneRIF Biological Term Annotations	1.0	null
PMC2263127-pone.0001816.s001.xls-E2F3_down_Bild-Symbol_E2F3	Rummagene Transcription Factor Associations 2026	1.0	null
interleukin-2 receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.727
GSE239844_7_v_2_crizotinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
T cell receptor signaling pathway	GO Biological Process Annotations 2025	1.0	null
496100579_HIP_possible Alzheimer's disease_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.87116
autoimmunity	GeneRIF Biological Term Annotations	1.0	null
ANXA11	Pathway Commons Protein-Protein Interactions	1.0	null
GSE116810_5_v_4_selinexor_human	RummaGEO Drug Perturbation Signatures	1.0	null
KYSE-520	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.824048
HCC1576	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.920378
PMC6112260__F9	PFOCR Pathway Figure Associations 2024	1.0	null
gliomas	GeneRIF Biological Term Annotations	1.0	null
nervous system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
GSE206729_4_v_0_trps1_human	RummaGEO Gene Perturbation Signatures	1.0	null
Dermatomyositis	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.9
Spinal Dysraphism	HuGE Navigator Gene-Phenotype Associations	1.0	null
idiopathic thrombotic thrombocytopenic purpura	GAD Gene-Disease Associations	1.0	null
myeloid dendritic cell antigen processing and presentation	GO Biological Process Annotations 2023	1.0	null
GSE95077_5_v_2_amiloride_human	RummaGEO Drug Perturbation Signatures	1.0	null
caid	GeneRIF Biological Term Annotations	1.0	null
predominating	GeneRIF Biological Term Annotations	1.0	null
GSE162892_3_v_2_isox_human	RummaGEO Drug Perturbation Signatures	1.0	null
Peripheral ganglion	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.307
Carcinoma, Renal Cell	HuGE Navigator Gene-Phenotype Associations	1.0	null
CRCGN016_MCF10A.TP53.M_24H:D05	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.61075
GSE213588_10_v_13_trametinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
sets	GeneRIF Biological Term Annotations	1.0	null
GSE203060_0_v_2_kdm4c_human	RummaGEO Gene Perturbation Signatures	1.0	null
motor nucleus of trigeminal nerve	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.981163
Translocation of ZAP-70 to Immunological synapse	Reactome Pathways 2014	1.0	null
discrete	GeneRIF Biological Term Annotations	1.0	null
GSE171837_0_v_2_bortezomib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE182680,GSE182683_0_v_6_dexamethasone_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE126463_0_v_2_pomalidomide_human	RummaGEO Drug Perturbation Signatures	1.0	null
genetic	GeneRIF Biological Term Annotations	1.0	null
clathrin-coated vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
EL-4 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.882
polyarteritis nodosa	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.422515
Acute Kidney Injury	HuGE Navigator Gene-Phenotype Associations	1.0	null
hsa-miR-544	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
C6/36 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.569
ZNF35	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.1574
carriage	GeneRIF Biological Term Annotations	1.0	null
membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
lymph node disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.377402
rostral presubiculum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.57647
dexamethasone_homo sapiens_gpl6480_gds3946	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
APOLIZUMAB	DGIdb Drug Targets 2026	1.0	3.30825
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.38191
positive regulation of homotypic cell-cell adhesion	GO Biological Process Annotations 2015	1.0	null
GSE165334_2_v_0_dabrafenib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
type i diabetes mellitus	KEGG Pathways	1.0	null
hel	GeneRIF Biological Term Annotations	1.0	null
GSE174498,GSE174500_2_v_7_asparaginase_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE244710_3_v_2_srsf1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Cytoplasmic vesicle membrane	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
N-terminal protein acetyltransferase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.814
Lymphoblast	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.921
antibodynegative	GeneRIF Biological Term Annotations	1.0	null
pollen	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.588031
DMS 273	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.5796
Immune System	Reactome Pathways 2014	1.0	null
late endosome membrane	GO Cellular Component Annotations 2023	1.0	null
GSE175787_13_v_7_rhoc_human	RummaGEO Gene Perturbation Signatures	-1.0	null
cancer	GAD High Level Gene-Disease Associations	1.0	0.295739
significant	GeneRIF Biological Term Annotations	1.0	null
GSE162623_0_v_1_ezh2_human	RummaGEO Gene Perturbation Signatures	1.0	null
Lumenal side of endoplasmic reticulum membrane	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
GSE175787_11_v_0_rhoc_human	RummaGEO Gene Perturbation Signatures	1.0	null
thrombocytopenia	GAD Gene-Disease Associations	1.0	null
Thrombocytopenia	DisGeNET Gene-Phenotype Associations	1.0	null
Integument	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.021
cytoplasmic vesicle membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
regulation of cellular process	GO Biological Process Annotations 2015	1.0	null
DNM1	Pathway Commons Protein-Protein Interactions	1.0	null
Giant Cell Arteritis	DisGeNET Gene-Disease Associations	1.0	null
skin disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042415
TAP complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.728
occipital pole, left, inferior aspect	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.83699
inner SZ in superolateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.919266
HCC1263	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.31088
Golgi membrane	GO Cellular Component Annotations 2023	1.0	null
GSE188570,GSE188571_3_v_4_decitabine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Membrane attack complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.223
Severe aplastic anemia	GWAS Catalog SNP-Phenotype Associations 2025	1.0	1.2699
OVCAR-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.47477
GSE95077_1_v_0_amiloride_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Erep	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.127
Intrinsic component of organelle membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.714
PTPRC	Pathway Commons Protein-Protein Interactions	1.0	null
medial parabrachial nucleus,right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.916589
Purpura, Thrombocytopenic, Idiopathic	HuGE Navigator Gene-Phenotype Associations	1.0	null
496100507_FWM_dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.18171
positive regulation of leukocyte cell-cell adhesion	GO Biological Process Annotations 2015	1.0	null
GSE142210_2_v_1_panobinostat_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE174498,GSE174500_5_v_1_asparaginase_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Juvenile Arthritis	DisGeNET Gene-Disease Associations	1.0	null
III, right, paravermis	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.98881
p105	GeneRIF Biological Term Annotations	1.0	null
Dementia	HuGE Navigator Gene-Phenotype Associations	1.0	null
GSE234514,GSE234516_2_v_3_palbociclib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE135350_3_v_7_dexamethasone_human	RummaGEO Drug Perturbation Signatures	1.0	null
spanish	GeneRIF Biological Term Annotations	1.0	null
cd4	GeneRIF Biological Term Annotations	1.0	null
GSE202434,GSE202438_10_v_0_talazoparib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE135030_3_v_5_fludarabine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
19235837-TableS2b	GeneSigDB Published Gene Signatures	1.0	null
Thrombocytopenia	HuGE Navigator Gene-Phenotype Associations	1.0	null
16597596-TableS3-3	GeneSigDB Published Gene Signatures	1.0	null
RNA polymerase III complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.719
plasma membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
PMC11263679-41598_2024_66946_MOESM1_ESM.pdf-109-ZNF223_ZNF223	Rummagene Transcription Factor Associations 2026	1.0	null
ancestral	GeneRIF Biological Term Annotations	1.0	null
GSE182181_1_v_0_ricolinostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
mhc class ii receptor activity	GO Molecular Function Annotations 2015	1.0	null
cytoplasmic vesicle membrane	GO Cellular Component Annotations 2023	1.0	null
ETV2::HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.5714
MKN7	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.46241
lymphoid cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.220831
Psoriasis	HuGE Navigator Gene-Phenotype Associations	1.0	null
bone marrow	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062462
inferior olivary complex, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.41573
NFATC4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.5547
GSE171837_3_v_2_bortezomib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
ia2	GeneRIF Biological Term Annotations	1.0	null
HINFP	JASPAR Predicted Transcription Factor Targets	1.0	null
lysosome	GO Cellular Component Annotations 2025	1.0	null
Autoimmune thyroid disease	KEGG Pathways 2026	1.0	null
NCI-H209	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.926251
regulation of T cell mediated immune response to tumor cell	GO Biological Process Annotations 2023	1.0	null
myeloid progenitor cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.067173
positivity	GeneRIF Biological Term Annotations	1.0	null
GSE213588_9_v_5_trametinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
NCIH1650	Achilles Cell Line Gene Essentiality Profiles	-1.0	-2.15071
Breast Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
dentate nucleus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.15882
Lytic vacuole membrane	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
GSE221742,GSE221743_1_v_0_sipa1_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE142210_3_v_0_panobinostat_human	RummaGEO Drug Perturbation Signatures	-1.0	null
immune response-activating cell surface receptor signaling pathway	GO Biological Process Annotations 2015	1.0	null
Myositis, Inclusion Body	HuGE Navigator Gene-Phenotype Associations	1.0	null
MHC class II receptor activity	GO Molecular Function Annotations 2025	1.0	null
PBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.0134
vesicle membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
GSE162892_4_v_0_sox9_human	RummaGEO Gene Perturbation Signatures	1.0	null
Lymphoid cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.648
ABL1_mutant_179_GSE45452	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	-1.0	-1.86214
allele	GeneRIF Biological Term Annotations	1.0	null
CRCGN016_MCF10A.WT.HP_24H:C21	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.18862
protein complex	GO Cellular Component Annotations 2015	1.0	null
GSE178340_5_v_3_carfilzomib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE76425_0_v_7_lenalidomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
aih	GeneRIF Biological Term Annotations	1.0	null
SKCO1	Achilles Cell Line Gene Essentiality Profiles	1.0	1.67832
GSE210682_0_v_3_methadone_human	RummaGEO Drug Perturbation Signatures	-1.0	null
layer II of caudal entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.02063
done	GeneRIF Biological Term Annotations	1.0	null
GSE202434,GSE202438_9_v_11_talazoparib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
cell adhesion molecules	KEGG Pathways	1.0	null
GSE228106_3_v_1_paclitaxel_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE231720,GSE231724_3_v_0_setd2_human	RummaGEO Gene Perturbation Signatures	1.0	null
blast cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.06461
Chronic Berylliosis	DisGeNET Gene-Disease Associations	1.0	null
Aortic Aneurysm, Abdominal	HuGE Navigator Gene-Phenotype Associations	1.0	null
CAOV4	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.22151
Phagosome	KEGG Pathways 2026	1.0	null
PLC/PRF/5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.30561
15231663-Table2	GeneSigDB Published Gene Signatures	1.0	null
GSE102870_3_v_9_nr1h4_human	RummaGEO Gene Perturbation Signatures	1.0	null
Interferon regulatory factor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.37
caudal presubiculum (postsubiculum)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.48805
Late endosome	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
bounding membrane of organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.00978
CP in retrosplenial cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.7953
Adenocarcinoma of lung_Lung Tissue_GSE1037	GEO Signatures of Differentially Expressed Genes for Diseases	1.0	1.43492
496100666_HIP_probable Alzheimer's disease_TBI_83_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.92801
POMC	Pathway Commons Protein-Protein Interactions	1.0	null
peptide antigen assembly with MHC protein complex	GO Biological Process Annotations 2023	1.0	null
intrinsic component of plasma membrane	GO Cellular Component Annotations 2015	1.0	null
anticyclic	GeneRIF Biological Term Annotations	1.0	null
PTPN11	Pathway Commons Protein-Protein Interactions	1.0	null
hladrb40101	GeneRIF Biological Term Annotations	1.0	null
GSE216043_7_v_8_cisplatin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Neoplasm Metastasis	DisGeNET Gene-Phenotype Associations	1.0	null
Complement component C1q complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.655
PMC3804941-supp_jem.20122709_JEM_20122709_TableS1.xlsx-Suppl_Table_1C-1772_genes-Table_S1_C_1_772_significantly_overexpressed_genes_during_AR_when_combining_p-values_at_FDR_20_AR	Rummagene Transcription Factor Associations 2026	1.0	null
CP in caudal subicular cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.89848
german	GeneRIF Biological Term Annotations	1.0	null
TCR signaling	Reactome Pathways 2014	1.0	null
GSE224294_3_v_2_ngly1_human	RummaGEO Gene Perturbation Signatures	1.0	null
emboliform nucleus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.42885
Acute Gvh Disease	DisGeNET Gene-Disease Associations	1.0	null
caudal prosubiculum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.19669
positive regulation of lymphocyte activation	GO Biological Process Annotations 2023	1.0	null
transport vesicle membrane	GO Cellular Component Annotations 2015	1.0	null
presentation	GeneRIF Biological Term Annotations	1.0	null
hsa-miR-939	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
GSE225762_1_v_0_pcmt1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
CRCGN016_MCF10A.WT.HP_24H:H24	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.16913
GSE186440,GSE186443_2_v_7_daxx_human	RummaGEO Gene Perturbation Signatures	-1.0	null
CRCGN017_MCF10A.TP53.M_24H:E09	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.37212
CRCGN015_MCF10A.WT.HP_24H:K07	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.63421
Purpura, Thrombotic Thrombocytopenic	HuGE Navigator Gene-Phenotype Associations	1.0	null
UM-UC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.918519
NFATC3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.0592
plastid-encoded plastid RNA polymerase complex A	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.707
Nodular sclerosis Hodgkin lymphoma	GWAS Catalog SNP-Phenotype Associations 2025	1.0	1.65229
Cataplexy	HuGE Navigator Gene-Phenotype Associations	1.0	null
Myositis	GWAS Catalog SNP-Phenotype Associations 2025	1.0	2.03979
organelle membrane	GO Cellular Component Annotations 2015	1.0	null
15869706-TableS2	GeneSigDB Published Gene Signatures	1.0	null
GSE158834_10_v_6_palmitic acid_human	RummaGEO Drug Perturbation Signatures	1.0	null
Kidney Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
HSF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.5655
positive regulation of T cell mediated immunity	GO Biological Process Annotations 2023	1.0	null
GSE239844_1_v_2_crizotinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
belong	GeneRIF Biological Term Annotations	1.0	null
rates	GeneRIF Biological Term Annotations	1.0	null
conserved	GeneRIF Biological Term Annotations	1.0	null
cardiovascular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052843
GSE162892_3_v_0_isox_human	RummaGEO Drug Perturbation Signatures	1.0	null
er to golgi transport vesicle membrane	GO Cellular Component Annotations 2015	1.0	null
Allograft Rejection(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
genotypes	GeneRIF Biological Term Annotations	1.0	null
GSE239844_8_v_9_crizotinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
abortion, habitual; abruptio placentae; placenta abruptio	GAD Gene-Disease Associations	1.0	null
membraneproximal	GeneRIF Biological Term Annotations	1.0	null
immune response-regulating signaling pathway	GO Biological Process Annotations 2015	1.0	null
er to golgi transport vesicle membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
embryonic structure	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05117
intrinsic component of endoplasmic reticulum membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
B-lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.266
GSE142210_3_v_10_panobinostat_human	RummaGEO Drug Perturbation Signatures	-1.0	null
lymphatic system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.158266
HSP90AB1	Pathway Commons Protein-Protein Interactions	1.0	null
intrinsic component of organelle membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
RERF-LC-KJ	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.86527
CI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.08543
GSE120612_6_v_5_etoposide_human	RummaGEO Drug Perturbation Signatures	1.0	null
Papillomavirus Infections	HuGE Navigator Gene-Phenotype Associations	1.0	null
CAPAN-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.995592
Lymph	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	2.364
warranted	GeneRIF Biological Term Annotations	1.0	null
GSE163297_0_v_1_doxorubicin_human	RummaGEO Drug Perturbation Signatures	1.0	null
positive regulation of T cell activation	GO Biological Process Annotations 2025	1.0	null
Laryngeal cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.973
donorrecipient	GeneRIF Biological Term Annotations	1.0	null
Fetal Diseases	HuGE Navigator Gene-Phenotype Associations	1.0	null
GSE135350_2_v_4_dexamethasone_human	RummaGEO Drug Perturbation Signatures	1.0	null
antigen processing and presentation of exogenous peptide antigen	GO Biological Process Annotations 2023	1.0	null
GSE150895,GSE150896_0_v_1_enzalutamide_human	RummaGEO Drug Perturbation Signatures	1.0	null
ERBB4:ERBB2 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.569
OVCA 420	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.872271
GSE114284_4_v_0_irf1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
regulation of homotypic cell-cell adhesion	GO Biological Process Annotations 2015	1.0	null
GSE139540_0_v_2_menadione_human	RummaGEO Drug Perturbation Signatures	-1.0	null
integral component of plasma membrane	GO Cellular Component Annotations 2015	1.0	null
NCIH1944_LUNG	CCLE Cell Line Proteomics	1.0	2.22514
GSE135352_0_v_3_napabucasin_human	RummaGEO Drug Perturbation Signatures	1.0	null
OSBPL1A	Pathway Commons Protein-Protein Interactions	1.0	null
HNF4A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	62.0052
SMAD5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.1567
develop	GeneRIF Biological Term Annotations	1.0	null
QIMR-WIL	Sanger Dependency Map Cancer Cell Line Proteomics	1.0	2.31211
ERF::FIGLA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.8637
Alanine aminotransferase levels	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.952288
GSE202434,GSE202438_2_v_14_talazoparib_human	RummaGEO Drug Perturbation Signatures	1.0	null
cleaves	GeneRIF Biological Term Annotations	1.0	null
GSE135350_3_v_0_dexamethasone_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Interferon regulatory factor 5 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.708
vascular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053363
SC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.962816
HCC1493	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.03109
preferences	GeneRIF Biological Term Annotations	1.0	null
GSE239844_7_v_5_crizotinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
integral component of plasma membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
CRCGN015_MCF10A.TP53.M_24H:G06	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-3.1957
RC-K8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.35669
hsa-miR-4687-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
HEC108_ENDOMETRIUM	CCLE Cell Line Proteomics	1.0	2.34673
GSE60217_1_v_8_inosine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE175787_13_v_9_rhoc_human	RummaGEO Gene Perturbation Signatures	-1.0	null
endocytic vesicle membrane	GO Cellular Component Annotations 2025	1.0	null
GSE169152_5_v_2_ibrutinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
central portion of GPi	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.37199
PMC5577301-in-17-237-s001.xls-AR_upregulated_DEGs-Heart_GSE9377_GENE_AR	Rummagene Transcription Factor Associations 2026	1.0	null
skeletal system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051945
hypoglossal nucleus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.08842
hematological	GAD High Level Gene-Disease Associations	1.0	0.293278
outer SZ in caudal midinferior temporal cortex (area TF)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-2.32556
Carcinoma, Small Cell	HuGE Navigator Gene-Phenotype Associations	1.0	null
normal variation	GAD Gene-Disease Associations	1.0	null
skeletal system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
vitro	GeneRIF Biological Term Annotations	1.0	null
outer SZ in frontal polar cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.959688
associations	GeneRIF Biological Term Annotations	1.0	null
Spinal ganglion	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.307
ER to Golgi transport vesicle membrane	GO Cellular Component Annotations 2025	1.0	null
arcuate nucleus of medulla, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.06845
CDCA8	Pathway Commons Protein-Protein Interactions	1.0	null
Essential Hypertension	DisGeNET Gene-Disease Associations	1.0	null
hsa-miR-539	TargetScan Predicted Conserved microRNA Targets	1.0	0.517189
antigen processing and presentation of exogenous peptide antigen via mhc class ii	GO Biological Process Annotations 2015	1.0	null
antigen processing and presentation of exogenous peptide antigen via MHC class II	GO Biological Process Annotations 2025	1.0	null
transmembrane signaling receptor activity	GO Molecular Function Annotations 2015	1.0	null
Venous blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.316
NCI-H1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.39764
Costimulation by the CD28 family	Reactome Pathways 2014	1.0	null
clathrin-coated vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
GSE213228_4_v_5_irak2_human	RummaGEO Gene Perturbation Signatures	1.0	null
b21	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.605
GSE123943_1_v_3_sox1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
cleavage	GeneRIF Biological Term Annotations	1.0	null
d2	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.531
ATP1B1	Pathway Commons Protein-Protein Interactions	1.0	null
Disease Susceptibility	HuGE Navigator Gene-Phenotype Associations	1.0	null
SG in ventrolateral prefrontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.20216
inner SZ in medial temporal-occipital cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.00811
thyroid gland disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.535409
CRCGN017_MCF10A.TP53.M_24H:N03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.9708
superficial layers of caudal presubiculum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.40808
MHC class I peptide loading complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.916
CA2 field, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.938772
paraventricular nuclei, left of thalamus, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.9268
ulcerative	GeneRIF Biological Term Annotations	1.0	null
binding	GO Molecular Function Annotations 2015	1.0	null
GSE213588_9_v_0_trametinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE193351_4_v_2_ruxolitinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
SPTBN2	Pathway Commons Protein-Protein Interactions	1.0	null
GSE135350_2_v_7_dexamethasone_human	RummaGEO Drug Perturbation Signatures	1.0	null
HCC1954_BREAST	CCLE Cell Line Proteomics	1.0	6.80906
lysosomal membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
candidate	GeneRIF Biological Term Annotations	1.0	null
fx1	GeneRIF Biological Term Annotations	1.0	null
GSE195514_0_v_1_stk25_human	RummaGEO Gene Perturbation Signatures	1.0	null
positive regulation of cellular process	GO Biological Process Annotations 2015	1.0	null
central nervous system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
EJM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.78487
NCI-H1092	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03426
choroid plexus of the lateral ventricle	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.22693
GSE167474_2_v_3_naa40_human	RummaGEO Gene Perturbation Signatures	-1.0	null
locus	GeneRIF Biological Term Annotations	1.0	null
MTDH_DEPLETION_GDS3179_98_human_LM2 breast cancer cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
t cell receptor signaling pathway	GO Biological Process Annotations 2015	1.0	null
GSE142210_4_v_6_panobinostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
OVKATE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.925536
GSE116810_2_v_4_selinexor_human	RummaGEO Drug Perturbation Signatures	1.0	null
Adaptive Immune System	Reactome Pathways 2014	1.0	null
GSE142210_2_v_6_panobinostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
trans-Golgi network membrane	GO Cellular Component Annotations 2025	1.0	null
coated vesicle membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
signal transduction	GO Biological Process Annotations 2015	1.0	null
496100582_HIP_probable Alzheimer's disease_TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.1617
drb30101	GeneRIF Biological Term Annotations	1.0	null
antigen processing and presentation of exogenous peptide antigen via MHC class II	GO Biological Process Annotations 2023	1.0	null
CRCGN015_HEPG2_48H:D17	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.58752
Endocytic vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
autoimmune	GeneRIF Biological Term Annotations	1.0	null
positive regulation of lymphocyte proliferation	GO Biological Process Annotations 2025	1.0	null
cell	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
hsa-miR-4756-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
Nuclear inner membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.063
GSE209898,GSE209899_0_v_1_flcn_human	RummaGEO Gene Perturbation Signatures	1.0	null
frontal pole, left, superior aspect	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.06188
distribution	GeneRIF Biological Term Annotations	1.0	null
GSE94849_6_v_4_pinometostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
musculoskeletal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.055617
Skin	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.021
confirming	GeneRIF Biological Term Annotations	1.0	null
inclusion	GeneRIF Biological Term Annotations	1.0	null
independently	GeneRIF Biological Term Annotations	1.0	null
CRCGN017_MCF10A.TP53.M_24H:I10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-3.91019
PMC7165319-3896263.f6.xlsx-List_of_significantly_diffenent-Significantly_different_proteins_between_AA_pool_and_CON_pool_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
Throat	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.182
b63	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.245
endocytic vesicle membrane	GO Cellular Component Annotations 2015	1.0	null
HCC461	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.12447
KIF11	Pathway Commons Protein-Protein Interactions	1.0	null
KYSE150	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.26
plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053877
Hepatitis B	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.869897
Ulcerative Colitis	DisGeNET Gene-Disease Associations	1.0	null
GSE188570,GSE188571_5_v_0_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
HCC1011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07825
superior colliculus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.825657
GSE155031_6_v_2_dextran_human	RummaGEO Drug Perturbation Signatures	1.0	null
alpha-beta T cell receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.248
Nephropathy	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.830103
GSE188570,GSE188571_3_v_1_decitabine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
MZ in dorsomedial frontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.974933
GATA1::TAL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.2591
regulation of cell adhesion	GO Biological Process Annotations 2015	1.0	null
tetraspanin-enriched microdomain	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.903
GSE82032_3_v_2_trametinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE156708_1_v_2_fbxo11_human	RummaGEO Gene Perturbation Signatures	1.0	null
clathrin-coated endocytic vesicle membrane	GO Cellular Component Annotations 2023	1.0	null
Endomysium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.706
KP-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.918519
DYNC1I2	Pathway Commons Protein-Protein Interactions	1.0	null
PMC3348545-NIHMS263168-supplement-3.pdf-3-PBX2_PBX2	Rummagene Transcription Factor Associations 2026	1.0	null
PLCG1	Pathway Commons Protein-Protein Interactions	1.0	null
GSE77108_3_v_7_saha_human	RummaGEO Drug Perturbation Signatures	-1.0	null
basal ventral medial nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.02211
CRCGN017_MCF10A.TP53.M_24H:A13	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.88977
NCI-H345	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17591
IgM immunoglobulin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.836
integral component of membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
GSE142210_3_v_7_panobinostat_human	RummaGEO Drug Perturbation Signatures	-1.0	null
SZ in caudal cingulate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.06439
Autoimmune Diseases	HuGE Navigator Gene-Phenotype Associations	1.0	null
GSE142210_9_v_0_panobinostat_human	RummaGEO Drug Perturbation Signatures	-1.0	null
PMC10916124-12864_2024_10174_MOESM1_ESM.xlsx-Supplementary_Table_6-The_downstream_genes_targeted_by_FLI1_The_ligand_vs_receptor_pairs_genes_FLI1	Rummagene Transcription Factor Associations 2026	1.0	null
GSE77108_6_v_9_saha_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE233679_14_v_7_nicotinamide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
mesoderm	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.066654
Lymphoid cell	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
RORA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.1856
GSE142210_2_v_7_panobinostat_human	RummaGEO Drug Perturbation Signatures	-1.0	null
anticcppositive	GeneRIF Biological Term Annotations	1.0	null
MEL-JUSO cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.625
Tuberculosis	HuGE Navigator Gene-Phenotype Associations	1.0	null
Lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.648
GSE185953_2_v_0_tlr3_human	RummaGEO Gene Perturbation Signatures	1.0	null
cell surface	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.21681
T cell receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.65
hypoglossal nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.847962
Aortic Aneurysm	DisGeNET Gene-Disease Associations	1.0	null
NarGHI complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.767
vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
parental	GeneRIF Biological Term Annotations	1.0	null
PE01	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.39116
Leukocyte	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
MAF::NFE2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.2119
Eosinophil percentage of white cells	GWAS Catalog SNP-Phenotype Associations 2025	1.0	1.6699
KCI-MOH1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.824048
cell part	LOCATE Curated Protein Localization Annotations	1.0	null
Carpal Tunnel Syndrome	DisGeNET Gene-Disease Associations	1.0	null
GSE103122_0_v_1_puromycin_human	RummaGEO Drug Perturbation Signatures	1.0	null
SMAD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.0052
Connective tissue	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.604
top	GeneRIF Biological Term Annotations	1.0	null
Endoplasmic reticulum membrane	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
cytoplasmic vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Gastric gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.921
plastid-encoded plastid RNA polymerase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.67
Tuberculosis, Pulmonary	HuGE Navigator Gene-Phenotype Associations	1.0	null
positive regulation of immune response	GO Biological Process Annotations 2025	1.0	null
matched	GeneRIF Biological Term Annotations	1.0	null
endocytic vesicle	GO Cellular Component Annotations 2023	1.0	null
GSE90552_1_v_0_valproic acid_human	RummaGEO Drug Perturbation Signatures	1.0	null
MHC class II protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.809
dr3	GeneRIF Biological Term Annotations	1.0	null
neonatal	GeneRIF Biological Term Annotations	1.0	null
pb1	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.024
sle	GeneRIF Biological Term Annotations	1.0	null
brain	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
cell part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.040127
hypersensitivity reaction disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.379256
matching	GeneRIF Biological Term Annotations	1.0	null
SU-DHL-5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16228
Coated vesicle membrane	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
gigantocellular group, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.983637
GSE114284_2_v_0_irf1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
White coat effect (clinic diastolic blood pressure minus ambulatory diastolic blood pressure)	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.530103
initiation	GeneRIF Biological Term Annotations	1.0	null
Dendritic lamellar body	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.708
GSE120612_4_v_1_etoposide_human	RummaGEO Drug Perturbation Signatures	1.0	null
Sarcoidosis, Pulmonary	DisGeNET Gene-Disease Associations	1.0	null
DNM2	Pathway Commons Protein-Protein Interactions	1.0	null
GSE212312_2_v_3_fbxw7_human	RummaGEO Gene Perturbation Signatures	-1.0	null
RAVE complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.843
positive regulation of response to stimulus	GO Biological Process Annotations 2015	1.0	null
Plasma membrane protein complex	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
LCK	Pathway Commons Protein-Protein Interactions	1.0	null
homozygotes	GeneRIF Biological Term Annotations	1.0	null
membrane	GO Cellular Component Annotations 2015	1.0	null
NR3C1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.3304
16728581-SuppTable1	GeneSigDB Published Gene Signatures	1.0	null
inner SZ in frontal polar cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.33399
ldr7	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.77
CAMA-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.891234
GSE165334_3_v_1_dabrafenib_human	RummaGEO Drug Perturbation Signatures	1.0	null
NR2C1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.7795
isolation	GeneRIF Biological Term Annotations	1.0	null
CD3G	Pathway Commons Protein-Protein Interactions	1.0	null
496100393_HIP_no dementia_no TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.20172
ERF::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.9534
Multiple Sclerosis	DisGeNET Gene-Disease Associations	1.0	null
Diabetes Mellitus	DisGeNET Gene-Disease Associations	1.0	null
GSE142210_2_v_8_panobinostat_human	RummaGEO Drug Perturbation Signatures	-1.0	null
fetal	GeneRIF Biological Term Annotations	1.0	null
umbilical cord	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.089047
Alveolar Bone Loss	HuGE Navigator Gene-Phenotype Associations	1.0	null
gracile nucleus, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.64476
Spleen	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
pyramidal layer of rostral subiculum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.64668
lytic vacuole membrane	GO Cellular Component Annotations 2025	1.0	null
IgE immunoglobulin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.82
WSU-DLCL2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0651
SG in granular insular cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.836434
Bacterial biofilm matrix	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.551
GSE158834_1_v_6_palm_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE95077_1_v_2_amiloride_human	RummaGEO Drug Perturbation Signatures	-1.0	null
VZ in medial temporal-occipital cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.835223
GSE125014_1_v_3_enzalutamide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Interferon Signaling	Reactome Pathways 2014	1.0	null
Immune Thrombocytopenic Purpura	DisGeNET Gene-Disease Associations	1.0	null
Phosphorylation of CD3 and TCR zeta chains	Reactome Pathways 2024	1.0	null
Lupus Erythematosus	DisGeNET Gene-Disease Associations	1.0	null
HOP-62	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.838506
lateral habenular nucleus, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.907206
normalvariation	GAD High Level Gene-Disease Associations	1.0	0.293278
hladr3	GeneRIF Biological Term Annotations	1.0	null
paracentral lobule, posterior part, right, lateral bank of gyrus	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-3.30681
GSE139455_0_v_6_stat3_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Carcinoma, Ovarian Epithelial	DisGeNET Gene-Disease Associations	1.0	null
RI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.854143
urogenital system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.050601
antigen receptor-mediated signaling pathway	GO Biological Process Annotations 2025	1.0	null
Plasma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.542
positive regulation of cytokine production	GO Biological Process Annotations 2025	1.0	null
Immunoglobulin/major histocompatibility complex, conserved site	InterPro Predicted Protein Domain Annotations	1.0	null
Vacuolar membrane	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
Primary Sclerosing Cholangitis	DisGeNET Gene-Disease Associations	1.0	null
SP in caudal subicular cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.82973
CLOZAPINE	DGIdb Drug Targets 2026	1.0	0.287674
Lupus Erythematosus, Systemic	HuGE Navigator Gene-Phenotype Associations	1.0	null
GSE222829,GSE223009_0_v_1_tet2_human	RummaGEO Gene Perturbation Signatures	1.0	null
TFAP4::FLI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.537
Acute graft versus host disease in bone marrow transplantation (recipient effect)	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.869897
GSE154337_0_v_1_temozolomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
biliary tract disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.099389
MDA-MB-468	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.965188
CRCGN015_MCF10A.WT.HP_24H:G15	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.20192
15665281-TableS1	GeneSigDB Published Gene Signatures	1.0	null
peptide antigen assembly with MHC class II protein complex	GO Biological Process Annotations 2023	1.0	null
receptor activity	GO Molecular Function Annotations 2015	1.0	null
GSE213588_9_v_11_trametinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Juvenile	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.95
late endosome membrane	GO Cellular Component Annotations 2025	1.0	null
lupus erythematosus, systemic	GAD Gene-Disease Associations	1.0	null
hladr34	GeneRIF Biological Term Annotations	1.0	null
HS 38.T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.45548
Malignant Neoplasm	DisGeNET Gene-Disease Associations	1.0	null
intracellular part	LOCATE Predicted Protein Localization Annotations	1.0	null
Endosome	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
RD_SOFT_TISSUE	CCLE Cell Line Proteomics	1.0	3.39227
Foramen magnum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.701
macromolecular complex	GO Cellular Component Annotations 2015	1.0	null
GSE129241_4_v_0_valproic acid_human	RummaGEO Drug Perturbation Signatures	1.0	null
positive regulation of cell activation	GO Biological Process Annotations 2015	1.0	null
GSE112714_2_v_3_ctnnb1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
GSE143782_7_v_11_calcitriol_human	RummaGEO Drug Perturbation Signatures	1.0	null
Hepatitis C	HuGE Navigator Gene-Phenotype Associations	1.0	null
GSE203060_0_v_1_kdm4c_human	RummaGEO Gene Perturbation Signatures	1.0	null
ETV2::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.6923
hlab	GeneRIF Biological Term Annotations	1.0	null
MHC protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.153
provide	GeneRIF Biological Term Annotations	1.0	null
coding	GeneRIF Biological Term Annotations	1.0	null
intracellular organelle part	GO Cellular Component Annotations 2015	1.0	null
Inclusion Body Myositis (Disorder)	DisGeNET Gene-Disease Associations	1.0	null
lymphocyte costimulation	GO Biological Process Annotations 2015	1.0	null
U266B1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11928
transport vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
NEUROD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.7813
endoplasmic reticulum	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
sclerosing cholangitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.446558
PD-1 signaling	Reactome Pathways 2024	1.0	null
late endosome	GO Cellular Component Annotations 2025	1.0	null
b65	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.247
Herpes simplex virus 1 infection	KEGG Pathways 2026	1.0	null
hsa-miR-671-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
alpha	GeneRIF Biological Term Annotations	1.0	null
Gingival Hemorrhage	HuGE Navigator Gene-Phenotype Associations	1.0	null
SNU-484	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.925193
hsa-miR-3190	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
NR3C2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.1909
CRCGN008_HEPG2_24H:I13	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.0792
MHC class I protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.321
TE9	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.04802
late endosome membrane	GO Cellular Component Annotations 2015	1.0	null
fusiform gyrus, right, bank of cos	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.994988
endoplasmic reticulum membrane	GO Cellular Component Annotations 2025	1.0	null
Epithalamus	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.152
arthritis	GeneRIF Biological Term Annotations	1.0	null
GSE196117_1_v_0_clarithromycin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
gracile nucleus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.33822
europe	GeneRIF Biological Term Annotations	1.0	null
Plasmacytoid T-lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.592
MAF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.0029
intracellular organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
GSE238018_3_v_0_mxra8_human	RummaGEO Gene Perturbation Signatures	1.0	null
VZ in midlateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.886821
adult stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059883
GSE213228_2_v_5_irak2_human	RummaGEO Gene Perturbation Signatures	1.0	null
vasculitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.112521
Generation of second messenger molecules	Reactome Pathways 2014	1.0	null
GSE202434,GSE202438_12_v_14_talazoparib_human	RummaGEO Drug Perturbation Signatures	1.0	null
hladrb4	GeneRIF Biological Term Annotations	1.0	null
regulation of t cell activation	GO Biological Process Annotations 2015	1.0	null
Sweat	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.502
caucasian	GeneRIF Biological Term Annotations	1.0	null
positive regulation of cell-cell adhesion	GO Biological Process Annotations 2015	1.0	null
CTSE	Pathway Commons Protein-Protein Interactions	1.0	null
T-lymphoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.997
KIF2A	Pathway Commons Protein-Protein Interactions	1.0	null
GSE77108_8_v_1_saha_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Systemic lupus erythematosus	KEGG Pathways 2026	1.0	null
fx2	GeneRIF Biological Term Annotations	1.0	null
site	GeneRIF Biological Term Annotations	1.0	null
paracentral lobule, posterior part, right, bank of cingulate sulcus	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.45207
ER to Golgi transport vesicle membrane	GO Cellular Component Annotations 2023	1.0	null
showed	GeneRIF Biological Term Annotations	1.0	null
NU-DUL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.78516
CTSH	Pathway Commons Protein-Protein Interactions	1.0	null
organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
CRCGN016_MCF10A.TP53.M_24H:N04	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.34434
endosome membrane	GO Cellular Component Annotations 2015	1.0	null
placenta	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.071154
respect	GeneRIF Biological Term Annotations	1.0	null
hsa-miR-4793-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
molecular_function	GO Molecular Function Annotations 2015	1.0	null
integral component of organelle membrane	GO Cellular Component Annotations 2015	1.0	null
children	GeneRIF Biological Term Annotations	1.0	null
haplotyping	GeneRIF Biological Term Annotations	1.0	null
B-lymphoblastoid cell	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.921
GSE185519_1_v_5_gilteritinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
Seronegative Rheumatoid Arthritis	DisGeNET Gene-Disease Associations	1.0	null
diabetes	GeneRIF Biological Term Annotations	1.0	null
ZNF667	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.652
churg-strauss syndrome	GAD Gene-Disease Associations	1.0	null
GSE236486_1_v_2_arnt_human	RummaGEO Gene Perturbation Signatures	1.0	null
T-lymphocyte cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.761
dr9	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.54
supraoptic nucleus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.57066
GSE209898,GSE209899_0_v_1_trametinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE193351_1_v_0_ruxolitinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
KP4	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.3387
cell part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
regulation of lymphocyte activation	GO Biological Process Annotations 2015	1.0	null
GSE158834_12_v_6_palmitic acid_human	RummaGEO Drug Perturbation Signatures	1.0	null
Palmitoyltransferase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.071
496100399_PCx_no dementia_no TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	-1.0	-2.0608
Mouth	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.776
Recurrence	HuGE Navigator Gene-Phenotype Associations	1.0	null
Leukocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.81
cell surface receptor signaling pathway	GO Biological Process Annotations 2015	1.0	null
Ataxia	DisGeNET Gene-Disease Associations	1.0	null
body	GeneRIF Biological Term Annotations	1.0	null
16597596-TableS6-2	GeneSigDB Published Gene Signatures	1.0	null
marrow	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.281423
inner SZ in posteror frontal cortex (motor cortex)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.882368
intrinsic component of membrane	GO Cellular Component Annotations 2015	1.0	null
GSE158834_11_v_5_palmitic acid_human	RummaGEO Drug Perturbation Signatures	1.0	null
SPIC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.5976
GSE130956_0_v_3_icaritin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
organelle part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
anticcp	GeneRIF Biological Term Annotations	1.0	null
Stomach	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.527
separate	GeneRIF Biological Term Annotations	1.0	null
hiv infections	GAD Gene-Disease Associations	1.0	null
GSE135030_11_v_0_fludarabine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
496100622_HIP_no dementia_no TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.40249
KIF20A	Pathway Commons Protein-Protein Interactions	1.0	null
KIF18A	Pathway Commons Protein-Protein Interactions	1.0	null
CRCGN015_MCF10A.TP53.M_24H:L19	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.21065
Plasma membrane respirasome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.757
GSE142210_11_v_7_panobinostat_human	RummaGEO Drug Perturbation Signatures	-1.0	null
sporangium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.16282
GSE232558_0_v_2_fbxl12_human	RummaGEO Gene Perturbation Signatures	1.0	null
positive regulation of T cell activation	GO Biological Process Annotations 2023	1.0	null
differences	GeneRIF Biological Term Annotations	1.0	null
linked	GeneRIF Biological Term Annotations	1.0	null
hsa-miR-3937	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
Tonsil	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	2.203
CRCGN015_MCF10A_48H:P03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.19001
positive regulation of immune response	GO Biological Process Annotations 2015	1.0	null
GSE219195_4_v_2_rbm12_human	RummaGEO Gene Perturbation Signatures	1.0	null
positive regulation of lymphocyte activation	GO Biological Process Annotations 2025	1.0	null
hsa-miR-1200	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
parolfactory gyri, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.11889
CRCGN008_HEPG2_24H:M20	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.7549
Costimulation by the CD28 family	Reactome Pathways 2024	1.0	null
blood platelet	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.30464
GSE107956,GSE107957_0_v_1_ythdf2_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE231720,GSE231724_2_v_1_setd2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
major	GeneRIF Biological Term Annotations	1.0	null
Cranial ganglion	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.1
sequences	GeneRIF Biological Term Annotations	1.0	null
cellular_component	LOCATE Curated Protein Localization Annotations	1.0	null
CRCGN015_MCF10A_48H:I02	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.16251
corpus callosum	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.7932
Inflammation	HuGE Navigator Gene-Phenotype Associations	1.0	null
hla	GeneRIF Biological Term Annotations	1.0	null
Peripheral blood lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.352
White blood cell count	GWAS Catalog SNP-Phenotype Associations 2025	1.0	1.45229
integral component of organelle membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
endocytic vesicle membrane	GO Cellular Component Annotations 2023	1.0	null
ancestor	GeneRIF Biological Term Annotations	1.0	null
positive regulation of immune system process	GO Biological Process Annotations 2015	1.0	null
vacuolar membrane	GO Cellular Component Annotations 2015	1.0	null
GSE214931_1_v_5_temozolomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Cytotoxic T-lymphocyte	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.689
ctla4	GeneRIF Biological Term Annotations	1.0	null
floret	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.134579
YAPC	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.41941
Helper T-lymphocyte	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.655
GSE139540_0_v_1_menadione_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Mixed Connective Tissue Disease	DisGeNET Gene-Disease Associations	1.0	null
cytoplasmic vesicle part	GO Cellular Component Annotations 2015	1.0	null
blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.51571
hsa-miR-486-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
mhc class ii protein complex	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
Late endosome membrane	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
MAFA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.8725
Autism spectrum disorder or schizophrenia	GWAS Catalog SNP-Phenotype Associations 2025	1.0	1.02218
KLC3	Pathway Commons Protein-Protein Interactions	1.0	null
Staphylococcus aureus infection	KEGG Pathways 2026	1.0	null
GSE206729_2_v_0_trps1_human	RummaGEO Gene Perturbation Signatures	1.0	null
BICR 22	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.27728
citrullinated	GeneRIF Biological Term Annotations	1.0	null
Autoimmune Hepatitis	DisGeNET Gene-Disease Associations	1.0	null
PMC5358695__F7	PFOCR Pathway Figure Associations 2024	1.0	null
Lambert-Eaton Myasthenic Syndrome	HuGE Navigator Gene-Phenotype Associations	1.0	null
CALU-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.965188
cytoplasmic vesicle membrane	GO Cellular Component Annotations 2015	1.0	null
GSE169205_3_v_8_sirt5_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE239844_8_v_5_crizotinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
IX, left, lateral hemisphere	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.989723
choroid plexus of the fourth ventricle	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.913944
necrosis	GeneRIF Biological Term Annotations	1.0	null
GSE205630_0_v_1_gmds_human	RummaGEO Gene Perturbation Signatures	-1.0	null
SARS-CoV MA15_Day4-PFU-10^3_None_GSE33266	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	2.01924
peptide antigen binding	GO Molecular Function Annotations 2015	1.0	null
CTSD	Pathway Commons Protein-Protein Interactions	1.0	null
dq2	GeneRIF Biological Term Annotations	1.0	null
GSE185519_3_v_5_gilteritinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
PBMC cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.758
Fbt	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.528
GSE123943_4_v_0_sox1_human	RummaGEO Gene Perturbation Signatures	1.0	null
CRCGN013_HEPG2_24H:D11	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.1411
Lung Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
GSE121043_0_v_1_aldh1a1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
ZDHHC17	Pathway Commons Protein-Protein Interactions	1.0	null
GSE142210_11_v_0_panobinostat_human	RummaGEO Drug Perturbation Signatures	-1.0	null
occipital pole, left, superior aspect	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.43634
Pauciarticular Juvenile Rheumatoid Arthritis	DisGeNET Gene-Disease Associations	1.0	null
one	GeneRIF Biological Term Annotations	1.0	null
antigen processing and presentation of peptide antigen via mhc class ii	GO Biological Process Annotations 2015	1.0	null
Memory T-lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.634
GSE206516,GSE206518_0_v_7_ptdss2_human	RummaGEO Gene Perturbation Signatures	1.0	null
positive regulation of T cell mediated immune response to tumor cell	GO Biological Process Annotations 2023	1.0	null
transport vesicle membrane	GO Cellular Component Annotations 2025	1.0	null
Sjogren's syndrome	GWAS Catalog SNP-Phenotype Associations 2025	1.0	2.40458
CTSC	Pathway Commons Protein-Protein Interactions	1.0	null
CRCGN015_MCF10A.WT.HP_24H:K20	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.17832
artery	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05761
PDCD1LG2	Pathway Commons Protein-Protein Interactions	1.0	null
Sporozoite	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.706
activation of immune response	GO Biological Process Annotations 2015	1.0	null
Common Variable Immunodeficiency	DisGeNET Gene-Disease Associations	1.0	null
cellular_component	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.040078
systemic lupus erythematosus	GAD Gene-Disease Associations	1.0	null
coated vesicle membrane	GO Cellular Component Annotations 2015	1.0	null
GSE169152_3_v_1_ibrutinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE216043_3_v_1_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
Leukemia, Myelogenous, Chronic, BCR-ABL Positive	HuGE Navigator Gene-Phenotype Associations	1.0	null
lymphoid tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054393
molecular transducer activity	GO Molecular Function Annotations 2015	1.0	null
FOXO1::ELK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.1359
mhc class ii protein complex	GO Cellular Component Annotations 2015	1.0	null
Genetic Predisposition to Disease	HuGE Navigator Gene-Phenotype Associations	1.0	null
hladq2	GeneRIF Biological Term Annotations	1.0	null
GSE167474_1_v_3_naa40_human	RummaGEO Gene Perturbation Signatures	-1.0	null
peptide antigen assembly with MHC class II protein complex	GO Biological Process Annotations 2025	1.0	null
Cytotoxic T-lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.007
CRCGN016_MCF10A.WT.HP_24H:A06	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.20056
CRCGN016_MCF10A.TP53.M_24H:C07	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.3234
celiac	GeneRIF Biological Term Annotations	1.0	null
strong	GeneRIF Biological Term Annotations	1.0	null
Psmb	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.189
TCF7L2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.9229
PMC11474056-pnas.2404841121.sd01.xlsx-Supplemental_Table_8_Fig1G-H-Supplemental_Table_8_Transcriptomic_overlap_between_LPS_and_Sepsis_and_or_Tuberculosis_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
GSE202434,GSE202438_3_v_14_talazoparib_human	RummaGEO Drug Perturbation Signatures	1.0	null
u698m	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.599
Integral component of organelle membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.752
Breast Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
clathrin-coated endocytic vesicle	GO Cellular Component Annotations 2025	1.0	null
Tuberculosis	KEGG Pathways 2026	1.0	null
positive regulation of T cell mediated immunity	GO Biological Process Annotations 2025	1.0	null
A2058	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.08109
COR-L105	Sanger Dependency Map Cancer Cell Line Proteomics	1.0	2.02713
interactions	GeneRIF Biological Term Annotations	1.0	null
unusual	GeneRIF Biological Term Annotations	1.0	null
SUM 1315M02	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.09349
GSE214248_0_v_1_cxcl8_human	RummaGEO Gene Perturbation Signatures	-1.0	null
southern	GeneRIF Biological Term Annotations	1.0	null
megakaryoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.150942
Area postrema	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.84
GSE121198,GSE129779_3_v_1_arid1a_human	RummaGEO Gene Perturbation Signatures	-1.0	null
15492233-TableS1	GeneSigDB Published Gene Signatures	1.0	null
GSE215086_8_v_0_batf_human	RummaGEO Gene Perturbation Signatures	1.0	null
intrinsic component of endoplasmic reticulum membrane	GO Cellular Component Annotations 2015	1.0	null
Other source	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.484
Cord blood stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.56
GSE178532_2_v_0_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE199543,GSE239447_0_v_4_ezh2_human	RummaGEO Gene Perturbation Signatures	1.0	null
HOXB6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.1376
hematopoietic stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.06493
GSE239844_4_v_10_crizotinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
lumenal side of endoplasmic reticulum membrane	GO Cellular Component Annotations 2023	1.0	null
GSE77108_4_v_9_saha_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Pineal gland	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.152
Transport vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
GSE213588_10_v_4_trametinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
POU5F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.0602
positive regulation of alpha-beta T cell activation	GO Biological Process Annotations 2023	1.0	null
intracellular organelle part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
interferon-gamma-mediated signaling pathway	GO Biological Process Annotations 2015	1.0	null
GSE202434,GSE202438_4_v_0_talazoparib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
sterically	GeneRIF Biological Term Annotations	1.0	null
Buffy coat	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.5
Toxoplasmosis	KEGG Pathways 2026	1.0	null
antigen processing and presentation of peptide antigen	GO Biological Process Annotations 2015	1.0	null
GSE152441,GSE152442_7_v_4_folic acid_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Hiv Infections	DisGeNET Gene-Disease Associations	1.0	null
Peripheral blood stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.864
Persistent hepatitis B virus infection	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.769897
CRCGN017_MCF10A.WT.HP_24H:H07	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-3.6185
HT-55	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.53941
reproduction	GAD High Level Gene-Disease Associations	1.0	0.298214
GSE213588_9_v_12_trametinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
american	GeneRIF Biological Term Annotations	1.0	null
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCLE Cell Line Proteomics	1.0	2.4101
GSE86021_0_v_1_crenolanib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
OCI-LY-19	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.926251
NR1H4::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.3135
KYSE-150	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.26918
Neck	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.182
GSE77108_6_v_7_saha_human	RummaGEO Drug Perturbation Signatures	1.0	null
496100555_TCx_no dementia_no TBI_87_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	-1.0	-2.14606
Neonatal Alloimmune Thrombocytopenia	DisGeNET Gene-Disease Associations	1.0	null
Tuberculosis	DisGeNET Gene-Disease Associations	1.0	null
GSE116810_5_v_0_selinexor_human	RummaGEO Drug Perturbation Signatures	-1.0	null
ACTR1B	Pathway Commons Protein-Protein Interactions	1.0	null
Lytic vacuole	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
NCI-H1734	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.47477
medial ganglionic eminence	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.21112
YY1	JASPAR Predicted Transcription Factor Targets	1.0	null
umbilical cord blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.260606
signal transducer activity	GO Molecular Function Annotations 2015	1.0	null
Asa Intolerant Asthma	DisGeNET Gene-Disease Associations	1.0	null
lupus erythematosus, systemic; systemic lupus erythematosus	GAD Gene-Disease Associations	1.0	null
GSE186647,GSE217288_11_v_7_hnrnpc_human	RummaGEO Gene Perturbation Signatures	1.0	null
hematopoietic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.235167
intrinsic component of plasma membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
chr6_33080909_G_A_b38	GTEx eQTL 2025	1.0	1.24647
GSE77108_4_v_7_saha_human	RummaGEO Drug Perturbation Signatures	-1.0	null
posttransplant	GeneRIF Biological Term Annotations	1.0	null
GSE239844_4_v_9_crizotinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
DYNC1LI2	Pathway Commons Protein-Protein Interactions	1.0	null
GSE142210_9_v_1_panobinostat_human	RummaGEO Drug Perturbation Signatures	-1.0	null
OCI-LY-10	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-3.64376
TCR signaling	Reactome Pathways 2024	1.0	null
Uterine Cervical Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
SU-DHL-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.854143
Whole body	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
GSE94849_7_v_5_pinometostat_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Asthma	KEGG Pathways 2026	1.0	null
clathrin-coated vesicle membrane	GO Cellular Component Annotations 2025	1.0	null
antigen	GeneRIF Biological Term Annotations	1.0	null
alloimmune	GeneRIF Biological Term Annotations	1.0	null
KIF2B	Pathway Commons Protein-Protein Interactions	1.0	null
GSE120612_7_v_1_etoposide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
cellular_component	LOCATE Predicted Protein Localization Annotations	1.0	null
GSE169152_5_v_7_ibrutinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
disequilibrium	GeneRIF Biological Term Annotations	1.0	null
chr6_33026370_T_A_b38	GTEx eQTL 2025	1.0	1.15472
SW480_LARGE_INTESTINE	CCLE Cell Line Proteomics	1.0	4.36806
Blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.775
sarcoidosis	GAD Gene-Disease Associations	1.0	null
CTSK	Pathway Commons Protein-Protein Interactions	1.0	null
HESX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.3155
GSE175787_4_v_0_rhoc_human	RummaGEO Gene Perturbation Signatures	1.0	null
vascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.043836
golgi membrane	GO Cellular Component Annotations 2015	1.0	null
GSE246335_1_v_5_tp53_human	RummaGEO Gene Perturbation Signatures	-1.0	null
CRCGN015_MCF10A.TP53.M_24H:O12	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.7048
hladrb3b4b5	GeneRIF Biological Term Annotations	1.0	null
Latex Hypersensitivity	HuGE Navigator Gene-Phenotype Associations	1.0	null
B-lymphoblast	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.921
Epstein-Barr virus infection	KEGG Pathways 2026	1.0	null
Hepatitis C	DisGeNET Gene-Disease Associations	1.0	null
vacuolar membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
Arthritis	DisGeNET Gene-Disease Associations	1.0	null
Coated vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
GSE217132_0_v_1_pfkfb4_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE169152_5_v_0_ibrutinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE196117_6_v_7_clarithromycin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
indians	GeneRIF Biological Term Annotations	1.0	null
seems	GeneRIF Biological Term Annotations	1.0	null
HCC2302	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.12447
CRCGN008_HEPG2_24H:N12	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.1243
Thrombocytopenia, Neonatal Alloimmune	HuGE Navigator Gene-Phenotype Associations	1.0	null
distinct	GeneRIF Biological Term Annotations	1.0	null
CRCGN016_MCF10A.TP53.M_24H:C21	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.02737
microspore	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.216226
SARS-CoV_0Hour_23935999_GSE47960	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	2.22339
regulation of cell-cell adhesion	GO Biological Process Annotations 2015	1.0	null
stratum pyramidale of rostral CA1	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.46653
hladrb30101	GeneRIF Biological Term Annotations	1.0	null
skw3	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.759
Heschl's gyrus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.48426
GSE175787_5_v_0_rhoc_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE206729_5_v_1_trps1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
adults	GeneRIF Biological Term Annotations	1.0	null
GSE171837_3_v_1_bortezomib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Crohn Disease	DisGeNET Gene-Disease Associations	1.0	null
GSE158834_2_v_5_palmitic acid_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE193351_1_v_2_ruxolitinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
Limbic system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.219
antigen processing and presentation of exogenous peptide antigen	GO Biological Process Annotations 2015	1.0	null
GSE239844_1_v_10_crizotinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE229468,GSE229471_2_v_1_znf587_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Primary biliary cholangitis	GWAS Catalog SNP-Phenotype Associations 2025	1.0	2.1699
CRCGN015_MCF10A.TP53.M_24H:F22	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.3494
RXRA::VDR	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.4
integumentary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042153
diabetesrelated	GeneRIF Biological Term Annotations	1.0	null
especially	GeneRIF Biological Term Annotations	1.0	null
CD274	Pathway Commons Protein-Protein Interactions	1.0	null
CRCGN015_MCF10A.WT.HP_24H:C20	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.97128
PMC7100912-EMS85677-supplement-Suppl__Tables_1_8.xlsx-Table_6-Supplementary_Table_6_Nanostring_gene_expression_profiling_of_memory_T_cells_transduced_with_BHLHE40_BHLHE40	Rummagene Transcription Factor Associations 2026	1.0	null
GSE186440,GSE186443_3_v_7_daxx_human	RummaGEO Gene Perturbation Signatures	-1.0	null
PMC5577301-in-17-237-s001.xls-AR_upregulated_DEGs-Heart_GSE4470_GENE_AR	Rummagene Transcription Factor Associations 2026	1.0	null
GSE213588_8_v_4_trametinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
signatures	GeneRIF Biological Term Annotations	1.0	null
middle frontal gyrus, right, superior bank of gyrus	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.33673
inner CP in temporal polar cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.99535
antigen binding	GO Molecular Function Annotations 2015	1.0	null
HCC1143	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.993915
NCI-H226Br cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.114
GSE145628,GSE145629_1_v_0_myrf_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE140965_1_v_4_mybpc3_human	RummaGEO Gene Perturbation Signatures	-1.0	null
NatA complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.034
Primary Biliary Cirrhosis	DisGeNET Gene-Disease Associations	1.0	null
Lymph	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
inner CP in rostral perirhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.911756
Scleroderma, Systemic	HuGE Navigator Gene-Phenotype Associations	1.0	null
late endosome	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
loci	GeneRIF Biological Term Annotations	1.0	null
drb1	GeneRIF Biological Term Annotations	1.0	null
Miscarriage	DisGeNET Gene-Disease Associations	1.0	null
GSE120612_4_v_0_etoposide_human	RummaGEO Drug Perturbation Signatures	1.0	null
endoplasmic reticulum part	GO Cellular Component Annotations 2015	1.0	null
Salivary gland	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.776
RAJI cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.213
KMM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.39909
endocytic vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
dpb1	GeneRIF Biological Term Annotations	1.0	null
Adipose tissue	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.604
A549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.918519
GSE77108_3_v_1_saha_human	RummaGEO Drug Perturbation Signatures	-1.0	null
THP-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.926251
Fnaitp	DisGeNET Gene-Disease Associations	1.0	null
fh9	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.534
GSE185519_4_v_7_gilteritinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Hematopoietic cell lineage	KEGG Pathways 2026	1.0	null
GSE95077_1_v_4_amiloride_human	RummaGEO Drug Perturbation Signatures	-1.0	null
KIF3C	Pathway Commons Protein-Protein Interactions	1.0	null
COPII-coated ER to Golgi transport vesicle	GO Cellular Component Annotations 2025	1.0	null
HSF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.1005
immunoglobulin mediated immune response	GO Biological Process Annotations 2023	1.0	null
SLR23	Achilles Cell Line Gene Essentiality Profiles	1.0	3.14853
GSE216043_3_v_2_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
north	GeneRIF Biological Term Annotations	1.0	null
thrombocytopenia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.408666
lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.221755
LAT	Pathway Commons Protein-Protein Interactions	1.0	null
MHC class II protein complex	GO Cellular Component Annotations 2023	1.0	null
Antineutrophil cytoplasmic antibody-associated vasculitis	GWAS Catalog SNP-Phenotype Associations 2025	1.0	8.9
SW 1990	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.28802
MHC class II protein complex binding	GO Molecular Function Annotations 2025	1.0	null
Nasal polyp	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.922
schizophrenia	GeneRIF Biological Term Annotations	1.0	null
rj2.2.5	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.114
evolve	GeneRIF Biological Term Annotations	1.0	null
sporangiophore	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.156748
CRCGN015_MCF10A.TP53.M_24H:L14	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.05665
Occupational Diseases	HuGE Navigator Gene-Phenotype Associations	1.0	null
Lymphoblastoid cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.733
Th1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.883
Thyrotoxic hypokalemic periodic paralysis and Graves disease	GWAS Catalog SNP-Phenotype Associations 2025	1.0	1.7699
highgrade	GeneRIF Biological Term Annotations	1.0	null
U343	Achilles Cell Line Gene Essentiality Profiles	1.0	1.36434
PMC3729750-NIHMS493477-supplement-1.doc-9-Supplementary_Table_10a_Comparison_of_gene_expression_profiles_between_cases_with_activated_SETBP1_high_expression_and_mutation_and_SETBP1_lower_expression_SETBP1	Rummagene Transcription Factor Associations 2026	1.0	null
GSE116810_2_v_3_selinexor_human	RummaGEO Drug Perturbation Signatures	-1.0	null
NR4A2::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.7993
MZ in granular insular cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.991039
CRCGN016_MCF10A.WT.HP_24H:D04	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.8373
Leishmaniasis	KEGG Pathways 2026	1.0	null
Abortion, Habitual	HuGE Navigator Gene-Phenotype Associations	1.0	null
GSE142210_2_v_10_panobinostat_human	RummaGEO Drug Perturbation Signatures	-1.0	null
VZ in posteror frontal cortex (motor cortex)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.856644
endoplasmic reticulum membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
IgA immunoglobulin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.735
GSE135350_3_v_5_dexamethasone_human	RummaGEO Drug Perturbation Signatures	-1.0	null
COPII-coated ER to Golgi transport vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
without	GeneRIF Biological Term Annotations	1.0	null
GSE202434,GSE202438_13_v_14_talazoparib_human	RummaGEO Drug Perturbation Signatures	1.0	null
clathrin-coated endocytic vesicle membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
MHC class II antigen presentation	Reactome Pathways 2014	1.0	null
blood platelet disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.352291
GSE188570,GSE188571_5_v_2_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
outer CP in posterior parahippocampal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.882896
peptide	GeneRIF Biological Term Annotations	1.0	null
Liver Cirrhosis	HuGE Navigator Gene-Phenotype Associations	1.0	null
GSE139016_0_v_2_disulfiram_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Myeloid Leukemia	DisGeNET Gene-Disease Associations	1.0	null
regulation of T cell activation	GO Biological Process Annotations 2025	1.0	null
NIH:OVCAR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.23722
GSE144120_3_v_1_plcg2_human	RummaGEO Gene Perturbation Signatures	1.0	null
positive regulation of leukocyte activation	GO Biological Process Annotations 2015	1.0	null
GSE169205_3_v_5_sirt5_human	RummaGEO Gene Perturbation Signatures	1.0	null
hypothyroidism	GeneRIF Biological Term Annotations	1.0	null
neonate	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.291722
GSE155031_5_v_3_dextran_human	RummaGEO Drug Perturbation Signatures	1.0	null
Graves Disease	DisGeNET Gene-Disease Associations	1.0	null
bile duct disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.105973
spi801	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.936
GSE169205_3_v_2_sirt5_human	RummaGEO Gene Perturbation Signatures	1.0	null
CRCGN008_HEPG2_24H:I19	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.1145
RKN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03394
immune response-activating signal transduction	GO Biological Process Annotations 2015	1.0	null
GSE196117_6_v_0_clarithromycin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE232558_0_v_1_fbxl12_human	RummaGEO Gene Perturbation Signatures	1.0	null
intracellular	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
GSE182680,GSE182683_7_v_2_dexamethasone_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE234289_4_v_1_rfx6_human	RummaGEO Gene Perturbation Signatures	-1.0	null
HOXC13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.7565
GSE77108_3_v_9_saha_human	RummaGEO Drug Perturbation Signatures	-1.0	null
positive regulation of T cell proliferation	GO Biological Process Annotations 2025	1.0	null
Lymph node	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	2.588
lytic vacuole	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
mhc protein complex	GO Cellular Component Annotations 2015	1.0	null
mexicans	GeneRIF Biological Term Annotations	1.0	null
protection	GeneRIF Biological Term Annotations	1.0	null
drb30202	GeneRIF Biological Term Annotations	1.0	null
Cytokine Signaling in Immune system	Reactome Pathways 2014	1.0	null
intracellular organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
hsa-miR-4731-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
496100436_FWM_no dementia_no TBI_95-99_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.41376
Orthogonal array	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.333
HNF4G	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.2905
positive regulation of immune response to tumor cell	GO Biological Process Annotations 2023	1.0	null
substantia nigra, pars reticulata, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.70927
GSE181431_0_v_1_calr_human	RummaGEO Gene Perturbation Signatures	-1.0	null
regulation of leukocyte activation	GO Biological Process Annotations 2015	1.0	null
FOXO1::FLI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.0438
EVSA-T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.889561
tail of caudate	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.898976
FOXO1::ELF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.833
hladr44	GeneRIF Biological Term Annotations	1.0	null
childhood	GeneRIF Biological Term Annotations	1.0	null
Fibre tract	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.14
GSE232218_1_v_0_valproic acid_human	RummaGEO Drug Perturbation Signatures	1.0	null
cell periphery	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
clathrin-coated vesicle membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
SNU1105	Achilles Cell Line Gene Essentiality Profiles	1.0	1.37181
MHC protein complex	GO Cellular Component Annotations 2025	1.0	null
HCC2218	Achilles Cell Line Gene Essentiality Profiles	1.0	1.87767
GSE202434,GSE202438_7_v_14_talazoparib_human	RummaGEO Drug Perturbation Signatures	1.0	null
Glioma	HuGE Navigator Gene-Phenotype Associations	1.0	null
Neutrophil count	GWAS Catalog SNP-Phenotype Associations 2025	1.0	1.7
KU812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.40755
Small intestine	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.844
CTSB	Pathway Commons Protein-Protein Interactions	1.0	null
Viral myocarditis	KEGG Pathways 2026	1.0	null
GSE94849_3_v_4_pinometostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
G-402	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.964082
ins	GeneRIF Biological Term Annotations	1.0	null
IRF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.5853
GSE213588_8_v_13_trametinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
496100490_HIP_no dementia_no TBI_86_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.28674
Schizophrenia	HuGE Navigator Gene-Phenotype Associations	1.0	null
bounding membrane of organelle	GO Cellular Component Annotations 2025	1.0	null
Response to hepatitis B vaccine	GWAS Catalog SNP-Phenotype Associations 2025	1.0	3.01549
HSPA8	Pathway Commons Protein-Protein Interactions	1.0	null
Diabetes, Gestational	HuGE Navigator Gene-Phenotype Associations	1.0	null
SHOX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.9693
DYNC1I1	Pathway Commons Protein-Protein Interactions	1.0	null
SK-N-DZ	Sanger Dependency Map Cancer Cell Line Proteomics	-1.0	-2.56516
predictor	GeneRIF Biological Term Annotations	1.0	null
Rosacea symptom severity	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.730103
SK-MES-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.919254
TCF7L1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.8645
GSE174498,GSE174500_5_v_8_asparaginase_human	RummaGEO Drug Perturbation Signatures	-1.0	null
trim26	GeneRIF Biological Term Annotations	1.0	null
GSE77108_6_v_1_saha_human	RummaGEO Drug Perturbation Signatures	1.0	null
CRCGN017_MCF10A.TP53.M_24H:G11	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-3.74194
LCP2	Pathway Commons Protein-Protein Interactions	1.0	null
hematopoietic system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
KIF4A	Pathway Commons Protein-Protein Interactions	1.0	null
anther	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.190202
regulation of immune response	GO Biological Process Annotations 2015	1.0	null
HCC2688	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.824048
Cell surface	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
Ileocecum	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.033
individuals	GeneRIF Biological Term Annotations	1.0	null
GSE111247_0_v_13_temozolomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Wegener's granulomatosis	GWAS Catalog SNP-Phenotype Associations 2025	1.0	4.9699
KYSE510	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.20923
GSE211262,GSE211263_2_v_1_pbrm1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Extranodal natural killer T-cell lymphoma (nasal type)	GWAS Catalog SNP-Phenotype Associations 2025	1.0	1.83979
PTPN6	Pathway Commons Protein-Protein Interactions	1.0	null
GSE213588_9_v_2_trametinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
Peripheral blood	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	2.588
profile	GeneRIF Biological Term Annotations	1.0	null
GSE152734,GSE152735_2_v_0_pbrm1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
JJN-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.93224
GSE157282_0_v_1_doxorubicin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
b95.8	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.059
wolfram	GeneRIF Biological Term Annotations	1.0	null
blood coagulation disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.227297
parasubicular cortex (parasubiculum)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.10954
GSE216043_10_v_0_cisplatin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
transport vesicle membrane	GO Cellular Component Annotations 2023	1.0	null
GSE202434,GSE202438_6_v_14_talazoparib_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE246335_1_v_2_tp53_human	RummaGEO Gene Perturbation Signatures	-1.0	null
NCI-H2369	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03662
CRCGN017_MCF10A.TP53.M_24H:M04	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.3138
cm94	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.96
YWHAE	Pathway Commons Protein-Protein Interactions	1.0	null
GSE225901_0_v_1_dexamethasone_human	RummaGEO Drug Perturbation Signatures	-1.0	null
ldr8	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.956
GSE205976,GSE205978_2_v_4_cep83_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE239844_7_v_9_crizotinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE135030_8_v_4_fludarabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
cingulate gyrus, parietal part, right, superior bank of gyrus	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.26503
common	GeneRIF Biological Term Annotations	1.0	null
CRCGN015_HEPG2_48H:C22	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-3.56973
PMC3572987-pone.0056308.s001.xls-EVI1_regulated_genes-GENE_MECOM	Rummagene Transcription Factor Associations 2026	1.0	null
positive regulation of t cell activation	GO Biological Process Annotations 2015	1.0	null
Umbilical cord blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.884
CRCGN011_HEPG2_24H:C20	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.25515
Myasthenia Gravis	DisGeNET Gene-Disease Associations	1.0	null
CRCGN017_MCF10A.TP53.M_24H:E01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.05455
trans-golgi network membrane	GO Cellular Component Annotations 2015	1.0	null
GSE234647_0_v_3_regorafenib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
CRCGN017_MCF10A.TP53.M_24H:G12	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.18107
GSE215086_3_v_0_batf_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE151612_4_v_2_pracinostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
inferior olive, medial nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	2.55618
CEBPA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.1747
GSE152441,GSE152442_1_v_4_folic acid_human	RummaGEO Drug Perturbation Signatures	-1.0	null
responses	GeneRIF Biological Term Annotations	1.0	null
GSE239844_6_v_9_crizotinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
mhc protein complex	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
16597596-TableS1-1	GeneSigDB Published Gene Signatures	1.0	null
cell part	GO Cellular Component Annotations 2015	1.0	null
MOLP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49934
GSE116492,GSE116495_3_v_1_stag2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE215086_5_v_7_batf_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Human T-cell leukemia virus 1 infection	KEGG Pathways 2026	1.0	null
Obesity	DisGeNET Gene-Disease Associations	1.0	null
Graft-versus-host disease	KEGG Pathways 2026	1.0	null
mammillary body, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.18681
GSE238018_3_v_4_mxra8_human	RummaGEO Gene Perturbation Signatures	-1.0	null
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.918519
paraterminal gyrus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.839781
biological_process	GO Biological Process Annotations 2015	1.0	null
GSE120612_4_v_5_etoposide_human	RummaGEO Drug Perturbation Signatures	1.0	null
15833844-Table1S	GeneSigDB Published Gene Signatures	1.0	null
Pregnancy Complications	HuGE Navigator Gene-Phenotype Associations	1.0	null
regulation of immune system process	GO Biological Process Annotations 2015	1.0	null
Aspirin exacerbated respiratory disease in asthmatics	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.630103
well	GeneRIF Biological Term Annotations	1.0	null
presence	GeneRIF Biological Term Annotations	1.0	null
CRCGN015_MCF10A.WT.HP_24H:C21	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.42027
15608674-Table1	GeneSigDB Published Gene Signatures	1.0	null
KIF3A	Pathway Commons Protein-Protein Interactions	1.0	null
GSE113734_3_v_2_qprt_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE228263_0_v_1_elesclomol_human	RummaGEO Drug Perturbation Signatures	-1.0	null
CRCGN016_MCF10A.WT.HP_24H:K09	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.6396
KM-12	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.75323
plasma membrane part	GO Cellular Component Annotations 2015	1.0	null
Endocytic vesicle membrane	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
Liver Cirrhosis	DisGeNET Gene-Disease Associations	1.0	null
mammillary body, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.31356
regulation of biological process	GO Biological Process Annotations 2015	1.0	null
designed	GeneRIF Biological Term Annotations	1.0	null
Chronic hepatitis B infection	GWAS Catalog SNP-Phenotype Associations 2025	1.0	1.3301
inner SZ in dorsomedial frontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.890617
Inner mitochondrial membrane protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.676
CTSF	Pathway Commons Protein-Protein Interactions	1.0	null
GSE157296,GSE157298_4_v_5_kbtbd4_human	RummaGEO Gene Perturbation Signatures	1.0	null
mark	GeneRIF Biological Term Annotations	1.0	null
endomembrane system	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
germ layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058869
MHC class II protein complex	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
thyroid	GeneRIF Biological Term Annotations	1.0	null
multiple	GeneRIF Biological Term Annotations	1.0	null
GSE68925_1_v_0_fasudil_human	RummaGEO Drug Perturbation Signatures	-1.0	null
VIIAf	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.2369
coated vesicle membrane	GO Cellular Component Annotations 2023	1.0	null
GSE196117_1_v_7_clarithromycin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE120612_6_v_1_etoposide_human	RummaGEO Drug Perturbation Signatures	1.0	null
regulation of leukocyte cell-cell adhesion	GO Biological Process Annotations 2015	1.0	null
GSE202434,GSE202438_9_v_0_talazoparib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
leukocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.269867
Hypothalamus	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.173
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.22081
cytoplasmic part	GO Cellular Component Annotations 2015	1.0	null
haplotypic	GeneRIF Biological Term Annotations	1.0	null
GSE238018_1_v_2_mxra8_human	RummaGEO Gene Perturbation Signatures	-1.0	null
ZSCAN21	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.3189
CTAG1A	Pathway Commons Protein-Protein Interactions	1.0	null
CRCGN017_MCF10A.TP53.M_24H:A17	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.05415
CRCGN017_MCF10A.WT.HP_24H:M07	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.39945
PMC5358695__F4	PFOCR Pathway Figure Associations 2024	1.0	null
Burkitt lymphoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.191
hepatitis c	GAD Gene-Disease Associations	1.0	null
t cell costimulation	GO Biological Process Annotations 2015	1.0	null
GSE77108_4_v_1_saha_human	RummaGEO Drug Perturbation Signatures	-1.0	null
clathrin-coated endocytic vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Anti-rubella virus IgG levels	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.539794
496100574_HIP_possible Alzheimer's disease_TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.12092
VZ in frontal polar cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.90701
RAB7A	Pathway Commons Protein-Protein Interactions	1.0	null
Immunoglobulin C1-set	InterPro Predicted Protein Domain Annotations	1.0	null
GSE135030_8_v_0_fludarabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
Hepatitis, Autoimmune	HuGE Navigator Gene-Phenotype Associations	1.0	null
Translocation of ZAP-70 to Immunological synapse	Reactome Pathways 2024	1.0	null
GSE157383_3_v_1_abemaciclib_human	RummaGEO Drug Perturbation Signatures	1.0	null
MHC class II, alpha/beta chain, N-terminal	InterPro Predicted Protein Domain Annotations	1.0	null
maximum	GeneRIF Biological Term Annotations	1.0	null
Hip joint	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.632
cytoplasm	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
T2 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.999
NCI-H1648	Sanger Dependency Map Cancer Cell Line Proteomics	-1.0	-1.99049
GSE163297_0_v_2_doxorubicin_human	RummaGEO Drug Perturbation Signatures	1.0	null
positive regulation of leukocyte cell-cell adhesion	GO Biological Process Annotations 2023	1.0	null
KIF26A	Pathway Commons Protein-Protein Interactions	1.0	null
ETV5::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.4317
Brain Neoplasms	HuGE Navigator Gene-Phenotype Associations	1.0	null
GSE120612_7_v_5_etoposide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
NCIH660	Achilles Cell Line Gene Essentiality Profiles	1.0	1.14888
present	GeneRIF Biological Term Annotations	1.0	null
loop	GeneRIF Biological Term Annotations	1.0	null
GSE77108_8_v_7_saha_human	RummaGEO Drug Perturbation Signatures	-1.0	null
SARS-dORF6_36Hour_23935999_GSE47960	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-2.45424
ETV2::FIGLA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.9074
MHC class II protein complex assembly	GO Biological Process Annotations 2023	1.0	null
Cell adhesion molecule (CAM) interaction	KEGG Pathways 2026	1.0	null
DPS complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.281
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.37087
15958054-Table3	GeneSigDB Published Gene Signatures	1.0	null
GSE87615_0_v_3_ascl1_human	RummaGEO Gene Perturbation Signatures	1.0	null
bacterial-type flagellum hook	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.961
GSE217201_1_v_0_asap2_human	RummaGEO Gene Perturbation Signatures	1.0	null
DYNC1H1	Pathway Commons Protein-Protein Interactions	1.0	null
Blood Group Incompatibility	HuGE Navigator Gene-Phenotype Associations	1.0	null
GSE158834_1_v_5_palmitic acid_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE128054_1_v_0_myt1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Trigeminal ganglion	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.1
endoplasmic reticulum part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Lymphoid tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.622
SU-DHL-6	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.61626
PMC9174882-EMMM-14-e15816-s004.xlsx-MYC_GeneSigs-DANG_BOUND_BY_MYC_MYC	Rummagene Transcription Factor Associations 2026	1.0	null
myopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.235964
Phosphorylation of CD3 and TCR zeta chains	Reactome Pathways 2014	1.0	null
GSE169152_3_v_6_ibrutinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
PMC7897682-Table_4.xlsx-S4E_-_CD14_Monocytes_and_THP1-Unnamed_2_GLI2	Rummagene Transcription Factor Associations 2026	1.0	null
hladrb345	GeneRIF Biological Term Annotations	1.0	null
caused	GeneRIF Biological Term Annotations	1.0	null
early	GeneRIF Biological Term Annotations	1.0	null
GSE202434,GSE202438_6_v_5_talazoparib_human	RummaGEO Drug Perturbation Signatures	1.0	null
regulation of T cell activation	GO Biological Process Annotations 2023	1.0	null
Kainate selective glutamate receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.097
18338247-SuppTable3	GeneSigDB Published Gene Signatures	1.0	null
Endoplasmic reticulum subcompartment	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
CRCGN015_MCF10A.TP53.M_24H:P13	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.0738
Chronic Obstructive Airway Disease	DisGeNET Gene-Disease Associations	1.0	null
GSE198380_0_v_1_phgdh_human	RummaGEO Gene Perturbation Signatures	1.0	null
polymorphic layer of caudal subiculum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.3903
Asthma	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.969897
HSP90AA1	Pathway Commons Protein-Protein Interactions	1.0	null
addition	GeneRIF Biological Term Annotations	1.0	null
particular	GeneRIF Biological Term Annotations	1.0	null
GSE135350_3_v_6_dexamethasone_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Antigen processing and presentation	KEGG Pathways 2026	1.0	null
COLO 741	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.850945
negative	GeneRIF Biological Term Annotations	1.0	null
immunoglobulin production involved in immunoglobulin-mediated immune response	GO Biological Process Annotations 2023	1.0	null
GSE158834_1_v_6_palmitic acid_human	RummaGEO Drug Perturbation Signatures	1.0	null
Asthma	DisGeNET Gene-Disease Associations	1.0	null
CTSA	Pathway Commons Protein-Protein Interactions	1.0	null
MKN-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.13566
drb10801	GeneRIF Biological Term Annotations	1.0	null
outer portion of medial ganglionic eminence	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.868856
inner SZ in dorsolateral prefrontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.50995
alleles	GeneRIF Biological Term Annotations	1.0	null
CSK	Pathway Commons Protein-Protein Interactions	1.0	null
GSE216043_10_v_8_cisplatin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Asi complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.282
risk	GeneRIF Biological Term Annotations	1.0	null
PKM	Pathway Commons Protein-Protein Interactions	1.0	null
B-lymphocyte cell line	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
trans-golgi network	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Purpura, Thrombotic Thrombocytopenic	DisGeNET Gene-Disease Associations	1.0	null
dpw5	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.105
A-VN-1203-2004(H5N1)_Day7-10^3pfu_22074594_GSE33263	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.69216
LGMN	Pathway Commons Protein-Protein Interactions	1.0	null
vacuole	LOCATE Predicted Protein Localization Annotations	1.0	null
GSE168798_0_v_1_isg15_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE142210_9_v_8_panobinostat_human	RummaGEO Drug Perturbation Signatures	-1.0	null
KIF15	Pathway Commons Protein-Protein Interactions	1.0	null
Lewy Body Disease	HuGE Navigator Gene-Phenotype Associations	1.0	null
Serine C-palmitoyltransferase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.088
GSE251992_1_v_0_saracatinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
graves' disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.844621
Vitiligo-Associated Multiple Autoimmune Disease	DisGeNET Gene-Disease Associations	1.0	null
golgi apparatus part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
CRCGN017_MCF10A.WT.HP_24H:N16	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.9855
Molybdopterin cofactor (Moco) biosynthesis adenylyltransferase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.069
GSE140997_10_v_7_nsun6_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Lymphocyte	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
GSE175787_13_v_6_rhoc_human	RummaGEO Gene Perturbation Signatures	-1.0	null
IKZF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	53.1761
diffuse panbonchiolitis	GAD Gene-Disease Associations	1.0	null
GSE206516,GSE206518_3_v_7_ptdss2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Organelle subcompartment	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
HSF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.3253
strongly	GeneRIF Biological Term Annotations	1.0	null
globose nucleus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.1667
golgi apparatus part	GO Cellular Component Annotations 2015	1.0	null
Thymocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.511
lysosome	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
Psoriasis Vulgaris	DisGeNET Gene-Disease Associations	1.0	null
antigen processing and presentation	KEGG Pathways	1.0	null
GSE240896,GSE240899_5_v_4_ccnt1_human	RummaGEO Gene Perturbation Signatures	1.0	null
positive regulation of response to stimulus	GO Biological Process Annotations 2025	1.0	null
hladr3dq2	GeneRIF Biological Term Annotations	1.0	null
GSE142210_11_v_10_panobinostat_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Intestinal immune network for IgA production	KEGG Pathways 2026	1.0	null
L33	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.50412
CRCGN017_MCF10A.WT.HP_24H:I17	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.00975
GSE147626_3_v_1_glutathione_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Sarcoidosis	HuGE Navigator Gene-Phenotype Associations	1.0	null
Curli	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.553
HCC2270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1258
GSE131660_2_v_0_piperlongumine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
integral component of membrane	GO Cellular Component Annotations 2015	1.0	null
Olfactory bulb	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.599
supraoptic nucleus, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.4917
GSE134029_3_v_4_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
ETV7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.4996
intrinsic component of membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
hematopoietic system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.504318
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.364513
cytoplasmic membrane-bounded vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
GSE222114,GSE222115_1_v_0_ezh2_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE180525,GSE180528_2_v_0_tbx3_human	RummaGEO Gene Perturbation Signatures	-1.0	null
pronounced	GeneRIF Biological Term Annotations	1.0	null
brain neoplasms; glioma	GAD Gene-Disease Associations	1.0	null
cardiovascular system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042147
extended	GeneRIF Biological Term Annotations	1.0	null
TCF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.0805
animal	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
ETV5::FOXO1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.6523
doxycycline_mus musculus_gpl2872_gse33875	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
CRCGN015_MCF10A.TP53.M_24H:J23	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-3.46615
diseases	GeneRIF Biological Term Annotations	1.0	null
GSE151612_4_v_11_pracinostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
BARHL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.7909
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.406798
CD3E	Pathway Commons Protein-Protein Interactions	1.0	null
GSE113734_3_v_0_qprt_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Periodontitis	HuGE Navigator Gene-Phenotype Associations	1.0	null
Hepatitis C, Chronic	HuGE Navigator Gene-Phenotype Associations	1.0	null
positive regulation of CD4-positive, alpha-beta T cell activation	GO Biological Process Annotations 2025	1.0	null
CRCGN015_MCF10A.WT.HP_24H:F16	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-3.3444
intrinsic component of organelle membrane	GO Cellular Component Annotations 2015	1.0	null
GSE158834_10_v_5_palmitic acid_human	RummaGEO Drug Perturbation Signatures	1.0	null
Inclusion Body Myopathy	DisGeNET Gene-Disease Associations	1.0	null
masked	GeneRIF Biological Term Annotations	1.0	null
GSE202434,GSE202438_10_v_11_talazoparib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
whole plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053894
IRF6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.0221
GSE158834_10_v_6_palm_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE195503_3_v_0_progesterone_human	RummaGEO Drug Perturbation Signatures	-1.0	null
layer IIIb of caudal entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	2.43071
Grm	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.51
subgenual (subcallosal) division of MFC (area 25)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.01873
Periodontitis, Juvenile	HuGE Navigator Gene-Phenotype Associations	1.0	null
inner SZ in orbital frontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.18891
Monocyte count	GWAS Catalog SNP-Phenotype Associations 2025	1.0	3.10969
homozygosity	GeneRIF Biological Term Annotations	1.0	null
subpopulations	GeneRIF Biological Term Annotations	1.0	null
Arthritis, Psoriatic	HuGE Navigator Gene-Phenotype Associations	1.0	null
Golgi membrane	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
GSE180185_4_v_8_setbp1_human	RummaGEO Gene Perturbation Signatures	1.0	null
italian	GeneRIF Biological Term Annotations	1.0	null
A-498	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35032
DNM3	Pathway Commons Protein-Protein Interactions	1.0	null
antigen processing and presentation of peptide or polysaccharide antigen via mhc class ii	GO Biological Process Annotations 2015	1.0	null
GSE130437_2_v_3_palbociclib_human	RummaGEO Drug Perturbation Signatures	1.0	null
autoantibodies	GeneRIF Biological Term Annotations	1.0	null
PMC5577301-in-17-237-s002.xls-AR_up_signature-AR_up-regulated_signature_genes_53_AR	Rummagene Transcription Factor Associations 2026	1.0	null
CRCGN017_MCF10A.WT.HP_24H:P15	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.4692
haplotype	GeneRIF Biological Term Annotations	1.0	null
GSE154936_3_v_2_remdesivir_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE77108_8_v_9_saha_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE193541_0_v_2_nifurtimox_human	RummaGEO Drug Perturbation Signatures	1.0	null
abortion, habitual; pregnancy complications	GAD Gene-Disease Associations	1.0	null
GSE215086_0_v_2_batf_human	RummaGEO Gene Perturbation Signatures	-1.0	null
carried	GeneRIF Biological Term Annotations	1.0	null
GSE214931_1_v_0_temozolomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
regulation of type II interferon production	GO Biological Process Annotations 2025	1.0	null
T-lymphocyte	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.689
GSE140997_10_v_1_nsun6_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Burkitt lymphoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.203
regulation of immune response	GO Biological Process Annotations 2025	1.0	null
HEp-2 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.979
antigen processing and presentation of exogenous antigen	GO Biological Process Annotations 2015	1.0	null
GSE134375_6_v_2_stat3_human	RummaGEO Gene Perturbation Signatures	1.0	null
Chronic Periodontitis	DisGeNET Gene-Disease Associations	1.0	null
GSE214931_3_v_0_temozolomide_human	RummaGEO Drug Perturbation Signatures	1.0	null
CL-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.67598
endosome membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
GSE116930,GSE116935_3_v_0_hes7_human	RummaGEO Gene Perturbation Signatures	1.0	null
NCI-H1651	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03426
GSE123943_4_v_3_sox1_human	RummaGEO Gene Perturbation Signatures	1.0	null
Juvenile Rheumatoid Arthritis	DisGeNET Gene-Disease Associations	1.0	null
trans-Golgi network	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
cingulate gyrus, parietal part, right, inferior bank of gyrus	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.42248
CORL23_LUNG	CCLE Cell Line Proteomics	1.0	2.67391
trans-Golgi network membrane	GO Cellular Component Annotations 2023	1.0	null
GSE199543,GSE239447_2_v_4_ezh2_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE152699,GSE152723_0_v_1_vemurafenib_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE161864,GSE161866_4_v_3_ror2_human	RummaGEO Gene Perturbation Signatures	1.0	null
JHH7_LIVER	CCLE Cell Line Proteomics	1.0	9.46966
GSE229580_2_v_1_creb1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
hsa-miR-580	TargetScan Predicted Conserved microRNA Targets	1.0	0.404082
GSE153871_1_v_3_cytarabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
Hematopoietic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.804
GSE116810_5_v_3_selinexor_human	RummaGEO Drug Perturbation Signatures	-1.0	null
reticular nucleus of thalamus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.08642
hypersensitivity reaction type ii disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.418394
megakaryocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.160355
MHC class II protein complex assembly	GO Biological Process Annotations 2025	1.0	null
rnf5	GeneRIF Biological Term Annotations	1.0	null
GSE206516,GSE206518_2_v_4_ptdss2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
clathrin-coated endocytic vesicle membrane	GO Cellular Component Annotations 2025	1.0	null
blood	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
RILP	Pathway Commons Protein-Protein Interactions	1.0	null
coated vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Hepatitis B vaccine response	GWAS Catalog SNP-Phenotype Associations 2025	1.0	1.15229
Alloimmunisation	DisGeNET Gene-Disease Associations	1.0	null
clathrin-coated vesicle membrane	GO Cellular Component Annotations 2015	1.0	null
GSE140997_2_v_1_nsun6_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE125014_6_v_3_enzalutamide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
MHC protein complex	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
drb3	GeneRIF Biological Term Annotations	1.0	null
antigen processing and presentation of exogenous peptide antigen	GO Biological Process Annotations 2025	1.0	null
serological	GeneRIF Biological Term Annotations	1.0	null
QGP-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.996408
occipital pole, left, lateral aspect	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.321
MHC class II protein complex binding	GO Molecular Function Annotations 2023	1.0	null
Downstream TCR signaling	Reactome Pathways 2024	1.0	null
immune response-regulating cell surface receptor signaling pathway	GO Biological Process Annotations 2015	1.0	null
plasma membrane	LOCATE Curated Protein Localization Annotations	1.0	null
Mutyh-Associate Polyposis	DisGeNET Gene-Disease Associations	1.0	null
central nucleus, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.14022
globus pallidus, internal segment, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.947512
regulation of T cell proliferation	GO Biological Process Annotations 2025	1.0	null
pocket	GeneRIF Biological Term Annotations	1.0	null
GSE181003_3_v_2_selinexor_human	RummaGEO Drug Perturbation Signatures	1.0	null
SARS-CoV MA15_Day4-PFU-10^5_None_GSE33266	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.83914
hsa-miR-4324	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
GSE126463_5_v_3_pomalidomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
inner SZ in ventrolateral prefrontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.1874
GSE213588_8_v_6_trametinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
HS 683	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.963179
CMG complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.632
GRAP2	Pathway Commons Protein-Protein Interactions	1.0	null
KIF2C	Pathway Commons Protein-Protein Interactions	1.0	null
GSE239844_6_v_10_crizotinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
Neuromyelitis Optica	DisGeNET Gene-Disease Associations	1.0	null
Leukemia	DisGeNET Gene-Disease Associations	1.0	null
B-50 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.028
Nitrate reductase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.609
PMC3669416-pone.0064838.s001.xls-mHTT-NFKB1_NFKB1	Rummagene Transcription Factor Associations 2026	1.0	null
Thymus Hyperplasia	DisGeNET Gene-Disease Associations	1.0	null
kawasaki disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.460883
however	GeneRIF Biological Term Annotations	1.0	null
transient Purkinje cell clusters	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.22067
bias	GeneRIF Biological Term Annotations	1.0	null
positive regulation of biological process	GO Biological Process Annotations 2015	1.0	null
regulation of CD4-positive, alpha-beta T cell activation	GO Biological Process Annotations 2023	1.0	null
lytic vacuole membrane	GO Cellular Component Annotations 2023	1.0	null
Rheumatic Heart Disease	HuGE Navigator Gene-Phenotype Associations	1.0	null
stamen	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.180026
GSE102870_7_v_9_nr1h4_human	RummaGEO Gene Perturbation Signatures	1.0	null
Influenza A	KEGG Pathways 2026	1.0	null
vivo	GeneRIF Biological Term Annotations	1.0	null
GSE214931_4_v_0_temozolomide_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE210870_0_v_2_snai1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Rheumatic Heart Disease	DisGeNET Gene-Disease Associations	1.0	null
a24	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.528
CRCGN015_MCF10A_48H:G10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.10145
496100560_PCx_no dementia_TBI_87_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	-1.0	-2.08926
integral component of lumenal side of endoplasmic reticulum membrane	GO Cellular Component Annotations 2015	1.0	null
GSE142210_9_v_5_panobinostat_human	RummaGEO Drug Perturbation Signatures	-1.0	null
NCI-H1573	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.98704
GSE195559_8_v_1_notch1_human	RummaGEO Gene Perturbation Signatures	1.0	null
accounted	GeneRIF Biological Term Annotations	1.0	null
SG in posterior frontal cortex (motor cortex)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.24489
type	GeneRIF Biological Term Annotations	1.0	null
Lysosomal membrane	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
GSE155031_5_v_0_dextran_human	RummaGEO Drug Perturbation Signatures	1.0	null
haplotypes	GeneRIF Biological Term Annotations	1.0	null
DYNC2LI1	Pathway Commons Protein-Protein Interactions	1.0	null
Blood Protein Measurement	DisGeNET Gene-Phenotype Associations	1.0	null
CD247	Pathway Commons Protein-Protein Interactions	1.0	null
CRCGN008_HEPG2_24H:O09	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.3629
Encephalomyelitis, Acute Disseminated	DisGeNET Gene-Disease Associations	1.0	null
GSE202434,GSE202438_9_v_1_talazoparib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
risks	GeneRIF Biological Term Annotations	1.0	null
GSE238018_1_v_0_mxra8_human	RummaGEO Gene Perturbation Signatures	1.0	null
b8dr3dq2	GeneRIF Biological Term Annotations	1.0	null
KLC4	Pathway Commons Protein-Protein Interactions	1.0	null
HCC1833_LUNG	CCLE Cell Line Proteomics	1.0	2.5348
OV7	Achilles Cell Line Gene Essentiality Profiles	1.0	1.0233
MS4A1	Pathway Commons Protein-Protein Interactions	1.0	null
lytic vacuole	LOCATE Predicted Protein Localization Annotations	1.0	null
T cell receptor signaling pathway	GO Biological Process Annotations 2023	1.0	null
GSE135350_2_v_1_dexamethasone_human	RummaGEO Drug Perturbation Signatures	1.0	null
membrane part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
pollen mother cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.195325
GSE102870_11_v_0_nr1h4_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Systemic lupus erythematosus	GWAS Catalog SNP-Phenotype Associations 2025	1.0	1.1699
trans-Golgi network	GO Cellular Component Annotations 2025	1.0	null
19658189-TableS4	GeneSigDB Published Gene Signatures	1.0	null
syndrome	GeneRIF Biological Term Annotations	1.0	null
endosome membrane	GO Cellular Component Annotations 2023	1.0	null
transport vesicle membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
NRL	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.6305
antigen receptor-mediated signaling pathway	GO Biological Process Annotations 2023	1.0	null
VZ in ventrolateral prefrontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.923867
hyperthyroidism	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.716021
Peripheral blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.301
GSE142210_2_v_5_panobinostat_human	RummaGEO Drug Perturbation Signatures	-1.0	null
regulation of cell activation	GO Biological Process Annotations 2015	1.0	null
outer SZ in midlateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.16344
umbilical artery	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.135206
GSE239844_1_v_5_crizotinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
clathrin-coated vesicle membrane	GO Cellular Component Annotations 2023	1.0	null
cellular_component	GO Cellular Component Annotations 2015	1.0	null
KIFAP3	Pathway Commons Protein-Protein Interactions	1.0	null
Thymus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.68
Immune system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
143B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02112
CRCGN017_MCF10A.TP53.M_24H:K10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.03055
population	GeneRIF Biological Term Annotations	1.0	null
CRCGN016_MCF10A.TP53.M_24H:H19	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.16414
microsporangium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.216226
496100608_FWM_no dementia_no TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.19787
hladrb3	GeneRIF Biological Term Annotations	1.0	null
VZ in caudal hippocampal proper	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.854727
ELF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.6048
PRKCQ	Pathway Commons Protein-Protein Interactions	1.0	null
Midbrain	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.14
CA46	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.47508
substantia nigra, pars reticulata, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.8419
NFYA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.7832
Inflammatory bowel disease	KEGG Pathways 2026	1.0	null
CRCGN016_MCF10A.WT.HP_24H:A16	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.73099
HEYA8_OVARY	CCLE Cell Line Proteomics	1.0	2.30939
GSE185519_3_v_7_gilteritinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
PMC9794594-DataSheet_1.xlsx-ST12-Unnamed_1_KLF6	Rummagene Transcription Factor Associations 2026	1.0	null
hepatitis, autoimmune; liver cirrhosis	GAD Gene-Disease Associations	1.0	null
cellular_component	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
GSE178532_1_v_0_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
PPARG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.3929
MGE-Lateral region	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.8772
Churg-Strauss Syndrome	HuGE Navigator Gene-Phenotype Associations	1.0	null
myeloid dendritic cell antigen processing and presentation	GO Biological Process Annotations 2025	1.0	null
plasma membrane	GO Cellular Component Annotations 2015	1.0	null
inclusion body myositis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.04966
CTSS	Pathway Commons Protein-Protein Interactions	1.0	null
19497124-TableS2	GeneSigDB Published Gene Signatures	1.0	null
hsa-miR-1321	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
T-lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.638
GSE145639_7_v_4_adar_human	RummaGEO Gene Perturbation Signatures	1.0	null
Thymoma	DisGeNET Gene-Disease Associations	1.0	null
clathrin-coated endocytic vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
NCI-H1299	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.850945
cell part	LOCATE Predicted Protein Localization Annotations	1.0	null
Adaptive Immune System	Reactome Pathways 2024	1.0	null
dutch	GeneRIF Biological Term Annotations	1.0	null
CRCGN013_HEPG2_24H:H15	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.96722
GSE169152_5_v_1_ibrutinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
Rheumatic Diseases	HuGE Navigator Gene-Phenotype Associations	1.0	null
layer V of area 35c	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.08578
SCC25_UPPER_AERODIGESTIVE_TRACT	CCLE Cell Line Proteomics	1.0	2.22514
Allograft rejection	KEGG Pathways 2026	1.0	null
18927307-tableS2	GeneSigDB Published Gene Signatures	1.0	null
KLC1	Pathway Commons Protein-Protein Interactions	1.0	null
Lymphoid tissue	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
KIF5A	Pathway Commons Protein-Protein Interactions	1.0	null
GSE213588_10_v_6_trametinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
intracellular part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
indian	GeneRIF Biological Term Annotations	1.0	null
cytokine-mediated signaling pathway	GO Biological Process Annotations 2015	1.0	null
positive regulation of CD4-positive, alpha-beta T cell activation	GO Biological Process Annotations 2023	1.0	null
coated vesicle membrane	GO Cellular Component Annotations 2025	1.0	null
FLI1::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.4859
cytoplasmic part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
olfactory part of entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.868469
GSE157894_2_v_3_cystine_human	RummaGEO Drug Perturbation Signatures	1.0	null
EBV-B cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.307
Downstream TCR signaling	Reactome Pathways 2014	1.0	null
external segment of globus pallidus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.898257
immune	GAD High Level Gene-Disease Associations	1.0	0.329042
muscle tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.235268
MHC class II receptor activity	GO Molecular Function Annotations 2023	1.0	null
Eosinophil percentage of granulocytes	GWAS Catalog SNP-Phenotype Associations 2025	1.0	1.41549
C1R cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.411
GSE164874_5_v_8_prednisolone_human	RummaGEO Drug Perturbation Signatures	1.0	null
vacuole	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
regulation of response to stimulus	GO Biological Process Annotations 2015	1.0	null
HCC4006	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.4685
Hairy cell leukemia cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.598
CRCGN010_HEPG2_24H:I16	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.02152
IRF8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.1863
GSE195503_3_v_2_progesterone_human	RummaGEO Drug Perturbation Signatures	-1.0	null
CRCGN015_MCF10A.WT.HP_24H:O12	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.26935
different	GeneRIF Biological Term Annotations	1.0	null
Peripheral blood	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
vacuolar part	GO Cellular Component Annotations 2015	1.0	null
reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.050914
496100391_FWM_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.14642
positive regulation of cell adhesion	GO Biological Process Annotations 2015	1.0	null
PMC2866657-pone.0010547.s001.xls-ERG-high-GENES_UPREGULATED_IN_ERGhigh_ERG	Rummagene Transcription Factor Associations 2026	1.0	null
nuclear outer membrane-endoplasmic reticulum membrane network	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Pulmonary arterial hypertension	GWAS Catalog SNP-Phenotype Associations 2025	1.0	1.90969
GSE239844_11_v_10_crizotinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
RACGAP1	Pathway Commons Protein-Protein Interactions	1.0	null
GSE128333_3_v_0_tcf4_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE189772,GSE189773_3_v_2_fbxo11_human	RummaGEO Gene Perturbation Signatures	1.0	null
golgi membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
HEPARIN	DGIdb Drug Targets 2026	1.0	4.411
CP in rostral hippocampus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.10181
GSE142210_9_v_7_panobinostat_human	RummaGEO Drug Perturbation Signatures	-1.0	null
their	GeneRIF Biological Term Annotations	1.0	null
Olfactory lobe	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.599
Celiac Disease	DisGeNET Gene-Disease Associations	1.0	null
GSE175787_13_v_0_rhoc_human	RummaGEO Gene Perturbation Signatures	-1.0	null
disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.311014
Shock, Septic	HuGE Navigator Gene-Phenotype Associations	1.0	null
GSE114284_4_v_3_irf1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE202434,GSE202438_10_v_1_talazoparib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
single-stranded DNA-binding protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.983
Plantar warts	GWAS Catalog SNP-Phenotype Associations 2025	1.0	1.13979
Corpus callosum	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.019
d96	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.127
cholangitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.289386
SARS-CoV MA15_Day2-PFU-10^4_None_GSE33266	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	2.0151
Tripartite attachment complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.526
Peripheral blood mononuclear cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.155
biological regulation	GO Biological Process Annotations 2015	1.0	null
lysosomal membrane	GO Cellular Component Annotations 2015	1.0	null
Uterus	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	3.287
dr2	GeneRIF Biological Term Annotations	1.0	null
CENPE	Pathway Commons Protein-Protein Interactions	1.0	null
Transport vesicle membrane	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
endosome membrane	GO Cellular Component Annotations 2025	1.0	null
GSE95077_5_v_4_amiloride_human	RummaGEO Drug Perturbation Signatures	1.0	null
PPARD	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.6484
GSE114284_1_v_5_irf1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE126463_0_v_2_arid2_human	RummaGEO Gene Perturbation Signatures	1.0	null
blood plasma	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.186668
496100645_HIP_no dementia_no TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.33551
cytoplasmic vesicle membrane	GO Cellular Component Annotations 2025	1.0	null
VZ in dorsomedial parietal cortex (area 7m)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.931737
paraventricular nuclei, right of thalamus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.05245
CD3D	Pathway Commons Protein-Protein Interactions	1.0	null
immune system process	GO Biological Process Annotations 2015	1.0	null
PMC5358695__F5	PFOCR Pathway Figure Associations 2024	1.0	null
hladr	GeneRIF Biological Term Annotations	1.0	null
Acute Disease	HuGE Navigator Gene-Phenotype Associations	1.0	null
NCI-N87	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.50156
whole body	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Schizophrenia	DisGeNET Gene-Disease Associations	1.0	null
bacterial-type flagellum	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.641
TEAD2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.5959
496100651_FWM_probable Alzheimer's disease_TBI_83_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.77011
Spleen	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.141
MAFK	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.1701
dqw1	GeneRIF Biological Term Annotations	1.0	null
dementia; hallucinations; lewy body disease	GAD Gene-Disease Associations	1.0	null
Oxyntic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.989
GSE206516,GSE206518_1_v_4_ptdss2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Immune System	Reactome Pathways 2024	1.0	null
protein complex	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
bounding membrane of organelle	GO Cellular Component Annotations 2015	1.0	null
DYNC2H1	Pathway Commons Protein-Protein Interactions	1.0	null
GSE214931_4_v_5_temozolomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Arthritis, Rheumatoid	HuGE Navigator Gene-Phenotype Associations	1.0	null
inflammation	GAD Gene-Disease Associations	1.0	null
NCIH2009_LUNG	CCLE Cell Line Proteomics	1.0	2.67391
muscular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.23492
Leukemia, Lymphocytic, Acute, L2	HuGE Navigator Gene-Phenotype Associations	1.0	null
outer SZ in primary somatosensory cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.06492
vesicle membrane	GO Cellular Component Annotations 2015	1.0	null
membrane-bounded vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Edinger-Westphal nucleus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.952351
Rheumatoid Arthritis	DisGeNET Gene-Disease Associations	1.0	null
ss95	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.568
GSE224294_4_v_2_ngly1_human	RummaGEO Gene Perturbation Signatures	1.0	null
DOHH-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.08543
Graft-Vs-Host Disease	DisGeNET Gene-Disease Associations	1.0	null
Th17 cell differentiation	KEGG Pathways 2026	1.0	null
inferior olive, principal nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.00052
ACTR1A	Pathway Commons Protein-Protein Interactions	1.0	null
Diabetes Mellitus, Type 1	HuGE Navigator Gene-Phenotype Associations	1.0	null
drb10301	GeneRIF Biological Term Annotations	1.0	null
Pityriasis Rosea	HuGE Navigator Gene-Phenotype Associations	1.0	null
catg	GeneRIF Biological Term Annotations	1.0	null
SPOTS complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.138
GSE87615_1_v_3_ascl1_human	RummaGEO Gene Perturbation Signatures	1.0	null
Immunoglobulin complex, circulating	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.251
hladrb10301	GeneRIF Biological Term Annotations	1.0	null
CRCGN017_MCF10A.WT.HP_24H:A13	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.16775
late endosome	GO Cellular Component Annotations 2023	1.0	null
VZ in caudal subicular cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.979685
GSE238018_1_v_5_mxra8_human	RummaGEO Gene Perturbation Signatures	-1.0	null
DYNLL1	Pathway Commons Protein-Protein Interactions	1.0	null
ZFP14	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	81.2946
GSE234647_0_v_2_regorafenib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Thyroid gland	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.182
subthalamic nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.17171
antigen processing and presentation of peptide antigen via MHC class II	GO Biological Process Annotations 2023	1.0	null
hladrb1	GeneRIF Biological Term Annotations	1.0	null
GSE135030_3_v_10_fludarabine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
genotypedependent	GeneRIF Biological Term Annotations	1.0	null
prospective	GeneRIF Biological Term Annotations	1.0	null
endosomal part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
PMC8905236-mmc2.xlsx-Table_S10-Table_S10_Differentially_regulated_genes_in_SPI1_high_vs_low_group_in_CGGA_GBM_dataset_SPI1	Rummagene Transcription Factor Associations 2026	1.0	null
Hematopoietic system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
peptide binding	GO Molecular Function Annotations 2015	1.0	null
GSE135030_3_v_0_fludarabine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Nuclear outer membrane-endoplasmic reticulum membrane network	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
interstitial nucleus of Cajal, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.03053
endocytic vesicle	GO Cellular Component Annotations 2025	1.0	null
Sarcoidosis (non-Lofgren's syndrome without extrapulmonary manifestations)	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.569897
specific	GeneRIF Biological Term Annotations	1.0	null
Intrinsic component of endoplasmic reticulum membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.872
GSE151612_4_v_8_pracinostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
possibly	GeneRIF Biological Term Annotations	1.0	null
snp	GeneRIF Biological Term Annotations	1.0	null
KYSE-70	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.824048
znf263_19887448_helas3_lof_human_gpl6884_gse19146	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	-1.0	-0.025882
Hematopoietic cell	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
GSE151612_4_v_7_pracinostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
occurred	GeneRIF Biological Term Annotations	1.0	null
intracellular membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
T98G	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.27553
MHC class Ib protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.573
vntr	GeneRIF Biological Term Annotations	1.0	null
PMC10020087-41388_2023_2602_MOESM3_ESM.xlsx-MDAMB231_KD-Gene_Name_AR	Rummagene Transcription Factor Associations 2026	1.0	null
drb34	GeneRIF Biological Term Annotations	1.0	null
Refractory Anemias	DisGeNET Gene-Disease Associations	1.0	null
fh5	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.022
MHC class II antigen presentation	Reactome Pathways 2024	1.0	null
Systemic sclerosis	GWAS Catalog SNP-Phenotype Associations 2025	1.0	1.9699
females	GeneRIF Biological Term Annotations	1.0	null
Sepsis	HuGE Navigator Gene-Phenotype Associations	1.0	null
Cerebral peduncle	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.14
hladr4x	GeneRIF Biological Term Annotations	1.0	null
integral component of endoplasmic reticulum membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
inner SZ in inferolateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.90266
GSE77108_8_v_2_saha_human	RummaGEO Drug Perturbation Signatures	-1.0	null
PAX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.5814
GSE155031_6_v_3_dextran_human	RummaGEO Drug Perturbation Signatures	1.0	null
Lofgrens Syndrome	DisGeNET Gene-Disease Associations	1.0	null
GSE94849_6_v_2_pinometostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
FOXL1	JASPAR Predicted Transcription Factor Targets	1.0	null
16597596-TableS3-1	GeneSigDB Published Gene Signatures	1.0	null
GSE142210_2_v_0_panobinostat_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE214931_2_v_5_temozolomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
PMC9288051-13046_2022_2428_MOESM4_ESM.xlsx-Super_enhancers_in_AML2-CLOSEST_GENE_RUNX3	Rummagene Transcription Factor Associations 2026	1.0	null
equivalent	GeneRIF Biological Term Annotations	1.0	null
clathrin-coated vesicle membrane	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
Sjogren'S Syndrome	DisGeNET Gene-Disease Associations	1.0	null
hematopoietic cell lineage	KEGG Pathways	1.0	null
lysosomal membrane	GO Cellular Component Annotations 2023	1.0	null
GATA2	JASPAR Predicted Transcription Factor Targets	1.0	null
Lumenal side of membrane	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
Thymic epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.99
membrane region	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.007697
GSE214382,GSE214383_1_v_2_ascl1_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE123958,GSE123959_0_v_1_mta1_human	RummaGEO Gene Perturbation Signatures	1.0	null
Bone marrow	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.395
trans-Golgi network membrane	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
Mitochondrial inner membrane peptidase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.969
COPII-coated ER to Golgi transport vesicle	GO Cellular Component Annotations 2023	1.0	null
CTSO	Pathway Commons Protein-Protein Interactions	1.0	null
SNU-216	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04522
males	GeneRIF Biological Term Annotations	1.0	null
GSE114284_2_v_3_irf1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE139455_2_v_5_stat3_human	RummaGEO Gene Perturbation Signatures	1.0	null
Cell envelope Sec protein transport complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.588
Exocrine gland	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.776
vascular skin disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.192344
leukemia, myelogenous, chronic, bcr-abl positive	GAD Gene-Disease Associations	1.0	null
GSE213588_9_v_4_trametinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
hepatitis	GeneRIF Biological Term Annotations	1.0	null
regulation of T cell mediated immune response to tumor cell	GO Biological Process Annotations 2025	1.0	null
Endosome membrane	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
GSE176008_0_v_1_azacitidine_human	RummaGEO Drug Perturbation Signatures	1.0	null
er to golgi transport vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
facial nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.27039
inaccessible	GeneRIF Biological Term Annotations	1.0	null
GSE135350_3_v_1_dexamethasone_human	RummaGEO Drug Perturbation Signatures	1.0	null
M059K	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.95107
GSE151612_0_v_11_pracinostat_human	RummaGEO Drug Perturbation Signatures	-1.0	null
b82	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.763
Periodontal Attachment Loss	HuGE Navigator Gene-Phenotype Associations	1.0	null
positive regulation of leukocyte cell-cell adhesion	GO Biological Process Annotations 2025	1.0	null
CRCGN015_HEPG2_48H:F04	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.00762
metaanalysis	GeneRIF Biological Term Annotations	1.0	null
Interferon Signaling	Reactome Pathways 2024	1.0	null
HCC364	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.57692
positive regulation of lymphocyte activation	GO Biological Process Annotations 2015	1.0	null
molecules	GeneRIF Biological Term Annotations	1.0	null
specificity	GeneRIF Biological Term Annotations	1.0	null
meta1	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.907
GSE171837_0_v_1_bortezomib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
beta2	GeneRIF Biological Term Annotations	1.0	null
plasma membrane part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
496100362_FWM_no dementia_no TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.33897
epitopic	GeneRIF Biological Term Annotations	1.0	null
signaling receptor activity	GO Molecular Function Annotations 2015	1.0	null
OCI-LY-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.22015
Cecum	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.033
lysosomal membrane	GO Cellular Component Annotations 2025	1.0	null
Chiasma	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.722
SCC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.926251
CRCGN017_MCF10A.TP53.M_24H:E07	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.38649
MAP3K13	Pathway Commons Protein-Protein Interactions	1.0	null
positive regulation of type II interferon production	GO Biological Process Annotations 2025	1.0	null
ER to Golgi transport vesicle membrane	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
trans-Golgi network	GO Cellular Component Annotations 2023	1.0	null
Pancreatic islet	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.298
Immunoglobulin-like domain	InterPro Predicted Protein Domain Annotations	1.0	null
cytoplasmic vesicle part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
NCIH2286_LUNG	CCLE Cell Line Proteomics	1.0	3.40435
inner SZ in dorsomedial extrastriate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.13766
organelle part	GO Cellular Component Annotations 2015	1.0	null
Th1 and Th2 cell differentiation	KEGG Pathways 2026	1.0	null
GSE84678,GSE93902_3_v_2_bcl11b_human	RummaGEO Gene Perturbation Signatures	1.0	null
been	GeneRIF Biological Term Annotations	1.0	null
central gray of the pons, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.98885
GSE188721_3_v_4_mesp1_human	RummaGEO Gene Perturbation Signatures	1.0	null
Golgi apparatus subcompartment	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
positive regulation of alpha-beta T cell activation	GO Biological Process Annotations 2025	1.0	null
A-375	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.872271
peptide antigen assembly with MHC protein complex	GO Biological Process Annotations 2025	1.0	null
SK-MEL-24	Sanger Dependency Map Cancer Cell Line Proteomics	1.0	1.76115
Vitiligo	DisGeNET Gene-Disease Associations	1.0	null
Spike	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.677
769-P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24955
NR1D2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	52.8379
BAT3 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.076
GSE213588_9_v_7_trametinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE95077_1_v_3_amiloride_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE151612_4_v_3_pracinostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
Lymphotoxin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.983
SKNAS_AUTONOMIC_GANGLIA	CCLE Cell Line Proteomics	1.0	3.29414
JHOC5	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.68411
membrane-bounded organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
linkage	GeneRIF Biological Term Annotations	1.0	null
MAFG::NFE2L1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.8054