association	dataset	threshold value	standardized value
prostate	GTEx Tissue Gene Expression Profiles	-1.0	-1.17213
TK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11982
NCI-H1355	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16817
MOLM-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.830226
RAJI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.12733
PMC10709143-41556_2023_1271_MOESM9_ESM.xls-Up_in_PAX7--Target_name_PAX7	Rummagene Transcription Factor Associations 2026	1.0	null
CMLT1	CCLE Cell Line Gene CNV Profiles	1.0	1.49706
Thyroid adenoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.239
HCC1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.875872
RPL13	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.19015
MDAMB157	CCLE Cell Line Gene CNV Profiles	1.0	1.36198
LOX-IMVI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.924566
C3A	CCLE Cell Line Gene CNV Profiles	1.0	1.63385
IMR32	CCLE Cell Line Gene CNV Profiles	-1.0	-1.45249
macromolecular complex	GO Cellular Component Annotations 2015	1.0	null
NIH:OVCAR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.65831
A-498	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04344
PA-TU-8988S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0065
FAM156B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.02947
RKO-E6	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.77651
G-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06427
fallopian tube	GTEx Tissue Gene Expression Profiles	-1.0	-1.17213
A172	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.19046
K-562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06427
small molecule binding	GO Molecular Function Annotations 2015	1.0	null
COV318	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.12733
SESTD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.80054
cytoplasm	LOCATE Predicted Protein Localization Annotations	1.0	null
NCI-H1793	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08138
NCIH1385	CCLE Cell Line Gene CNV Profiles	-1.0	-1.61145
COLO668	CCLE Cell Line Gene CNV Profiles	1.0	1.51081
DOR 13	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.5788
SCLC-22H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.19301
SW 1573	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.11983
JHH1	CCLE Cell Line Gene CNV Profiles	1.0	2.06795
salivary gland	GTEx Tissue Gene Expression Profiles	-1.0	-1.17213
HSPG2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.3176
EPLC-272H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.923964
TOV-112D	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.5788
SUPHD1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.50535
NCI-H446	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.950677
nucleus	GO Cellular Component Annotations 2023	1.0	null
NCI-H2198	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.891706
NCIH647	CCLE Cell Line Gene CNV Profiles	1.0	2.69004
VMRC-LCD	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05489
HCC2885	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07321
SNU119	CCLE Cell Line Gene CNV Profiles	1.0	1.42047
DAOY	CCLE Cell Line Gene CNV Profiles	-1.0	-1.87452
NCI-H2373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.33109
COR-L279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08199
YMB-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04344
HCC1599	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.07723
BT-483	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.36729
NCI-H1648	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28962
nucleotide binding	GO Molecular Function Annotations 2015	1.0	null
NCI-H1092	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.27384
CHP-212	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.52358
MKN74	CCLE Cell Line Gene CNV Profiles	1.0	1.96416
KLM1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.20393
rna binding	GO Molecular Function Annotations 2015	1.0	null
IGR1	CCLE Cell Line Gene CNV Profiles	1.0	2.17952
NCI-H510A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.52605
Heterogeneous nuclear ribonucleoprotein C	InterPro Predicted Protein Domain Annotations	1.0	null
KMS28BM	CCLE Cell Line Gene CNV Profiles	1.0	1.35767
intracellular membrane-bounded organelle	GO Cellular Component Annotations 2015	1.0	null
GRANTA-519	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.45118
CORL88	CCLE Cell Line Gene CNV Profiles	1.0	1.52526
UBA3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.51266
C32TG	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.949771
HOXB7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.5376
MM1S	CCLE Cell Line Gene CNV Profiles	-1.0	-2.04399
HS571T	CCLE Cell Line Gene CNV Profiles	-1.0	-1.85734
RNA recognition motif domain	InterPro Predicted Protein Domain Annotations	1.0	null
CPCN	CCLE Cell Line Gene CNV Profiles	-1.0	-1.46941
SCLC-21H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.43629
CHP212	CCLE Cell Line Gene CNV Profiles	-1.0	-1.48654
intracellular organelle	GO Cellular Component Annotations 2015	1.0	null
SBC5	CCLE Cell Line Gene CNV Profiles	1.0	1.4836
HEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.71674
KYSE-270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2024
CAL-148	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.59822
intracellular membrane-bounded organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
MOLM6	CCLE Cell Line Gene CNV Profiles	1.0	1.97669
KMS-28BM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.31517
PMC6848891-DataSheet_1.xlsx-Supplementary_Table_4-Supplementary_Table_4_STAT3_partner_proteins_as_determined_by_mass_spectrometry_STAT3	Rummagene Transcription Factor Associations 2026	1.0	null
T3M4	CCLE Cell Line Gene CNV Profiles	1.0	1.68578
NCI-H2795	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.48732
HCC33	CCLE Cell Line Gene CNV Profiles	-1.0	-1.75841
NCIH209	CCLE Cell Line Gene CNV Profiles	-1.0	-1.58962
LS1034	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.886196
LN319	CCLE Cell Line Gene CNV Profiles	1.0	1.78255
cell part	GO Cellular Component Annotations 2015	1.0	null
SK-MEL-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.31517
HCC630	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.833581
HCC2157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.26622
U-698-M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.34989
cell part	LOCATE Predicted Protein Localization Annotations	1.0	null
MDA-MB-157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01402
GSK3_INHIBITION_GDS4043_459_human_MLL leukemia cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
PANC 03.27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.886196
RKO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.77651
ZR-75-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04403
IMR-32	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.71496
HCC38	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0065
NB1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.04827
SNU-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.38875
PMC8612733-elife-71982-fig7-data1.xlsx-Sheet1-EGFP-YBX1_IP-MS_3xFlag-YBX1_IP-MS_YBX1	Rummagene Transcription Factor Associations 2026	1.0	null
intracellular organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
CAPAN-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.891706
PRRT4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.46675
nucleic acid binding	GO Molecular Function Annotations 2015	1.0	null
HEP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0065
nucleus	LOCATE Predicted Protein Localization Annotations	1.0	null
nucleoside phosphate binding	GO Molecular Function Annotations 2015	1.0	null
membrane-bounded organelle	GO Cellular Component Annotations 2015	1.0	null
SCAMP4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.85093
KPNSI9S	CCLE Cell Line Gene CNV Profiles	-1.0	-1.82148
NCI-H292	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.63788
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1578
U937	CCLE Cell Line Gene CNV Profiles	1.0	1.73399
binding	GO Molecular Function Annotations 2015	1.0	null
cellular_component	LOCATE Predicted Protein Localization Annotations	1.0	null
Nucleotide-binding alpha-beta plait domain	InterPro Predicted Protein Domain Annotations	1.0	null
NCI-H28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07321
PMC10746608-427_2023_709_MOESM5_ESM.xlsx-NR3C1_partners-NR3C1_known_protein_partners_according_to_BioGrid_NR3C1	Rummagene Transcription Factor Associations 2026	1.0	null
RRP9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.32243
Disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.012
organic cyclic compound binding	GO Molecular Function Annotations 2015	1.0	null
OCI-LY-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.923964
intracellular part	GO Cellular Component Annotations 2015	1.0	null
EJM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.27384
ribonucleoprotein complex	GO Cellular Component Annotations 2015	1.0	null
SUM 229PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.875872
HCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.891706
CAL148	CCLE Cell Line Gene CNV Profiles	-1.0	-1.43272
BICR 31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.12733
OVSAHO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.15835
Retinitis pigmentosa 11	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.223
KYSE-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.891706
molecular_function	GO Molecular Function Annotations 2015	1.0	null
PK-45P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.15118
membrane-bounded organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
NCI-H1048	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.55937
NCI-N417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.95422
COR-L88	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.73055
SIMA	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33709
intracellular membrane-bounded organelle	GO Cellular Component Annotations 2023	1.0	null
C3A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00564
KDM5A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.88617
cellular_component	GO Cellular Component Annotations 2015	1.0	null
SK-MEL-28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.5617
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.886196
Organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.027
NCI-H209	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.63788
LXF-289	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.886196
PRPF4B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.29125
cervix uteri	GTEx Tissue Gene Expression Profiles	1.0	1.5127
PK45H	CCLE Cell Line Gene CNV Profiles	-1.0	-1.32639
NCI-H2081	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.886196
RBM28	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.13269
FU97	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.11396
Cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.017
HCC2218	CCLE Cell Line Gene CNV Profiles	-1.0	-1.3477
NCIH1437	CCLE Cell Line Gene CNV Profiles	-1.0	-2.34943
CFPAC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.949771
CHP126	CCLE Cell Line Gene CNV Profiles	-1.0	-1.38759
SNU-475	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.18107
WM2664	CCLE Cell Line Gene CNV Profiles	-1.0	-1.59783
KYSE-150	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.968104
MKN-74	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.27724
PMC8612733-elife-71982-fig7-data1.xlsx-Sheet1-3xFlag-YBX1_IP-MS_from_sheet2_YBX1	Rummagene Transcription Factor Associations 2026	1.0	null
ARTN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.01491
NCIH510	CCLE Cell Line Gene CNV Profiles	1.0	1.44247
MHH-ES-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23747
MDA-MB-175-VII	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.36786
organelle	GO Cellular Component Annotations 2015	1.0	null
FU97	CCLE Cell Line Gene CNV Profiles	1.0	2.64339
NAMALWA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.56146
SUPT11	CCLE Cell Line Gene CNV Profiles	1.0	1.45797
NIHOVCAR3	CCLE Cell Line Gene CNV Profiles	1.0	1.7899
BT-549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.891706
KYSE270	CCLE Cell Line Gene CNV Profiles	1.0	1.50756
bladder	GTEx Tissue Gene Expression Profiles	1.0	0.934201
heterocyclic compound binding	GO Molecular Function Annotations 2015	1.0	null
COV413A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.19046
nucleus	GO Cellular Component Annotations 2015	1.0	null
DMS 79	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.830226
RMG-I	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23984
PK1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.83171
Ovary	GTEx Tissue Gene Expression Profiles 2023	1.0	1.21734
MEWO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.76465
HUH6	CCLE Cell Line Gene CNV Profiles	1.0	1.55335
YMB-1-E	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04344
HCC2911	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25602
PK-45H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.5788
HELA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.22816
G111	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11889
A-673	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.952817
EGFR_drugactivation_30_GDS4361	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	1.0	1.6171
PMC8120133-supplementarytables_ddab063.xlsx-Table_S2-Table_S2_Differentially_expressed_genes_in_DUX4-fl_and_DUX4-s_DUX4	Rummagene Transcription Factor Associations 2026	1.0	null
RL	CCLE Cell Line Gene CNV Profiles	1.0	1.37332
organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
KNS42	CCLE Cell Line Gene CNV Profiles	-1.0	-1.73013
CPC-N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.59822
intracellular part	LOCATE Predicted Protein Localization Annotations	1.0	null
NCIH292	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36377
NUGC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.875872
HCC1599	CCLE Cell Line Gene CNV Profiles	-1.0	-1.68022
TOV112D	CCLE Cell Line Gene CNV Profiles	-1.0	-2.67245
OVSAHO	CCLE Cell Line Gene CNV Profiles	1.0	2.44904
RNA binding	GO Molecular Function Annotations 2023	1.0	null
NCI-H1666	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.924566
SW 48	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.34989
TALL1	CCLE Cell Line Gene CNV Profiles	1.0	1.49387
YAE1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.5319
NCI-H2803	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.11983