association	dataset	threshold value	standardized value
GSE240386,GSE242143_1_v_4_morc2_human	RummaGEO Gene Perturbation Signatures	1.0	null
NR3C2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.5705
SHOX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.5235
Male reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.209
ETV2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.4746
GSE240386,GSE242143_1_v_6_morc2_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE150055_0_v_2_melphalan_human	RummaGEO Drug Perturbation Signatures	1.0	null
PMC9263655-mmc3.xlsx-ZNF436-AS1-Prediction_catRAPID_ZNF436	Rummagene Transcription Factor Associations 2026	1.0	null
EVX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.752
ELK1::HOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.8858
Imago	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.714
SPIB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.0417
KARPAS-422 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.766
ONECUT1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.6616
PITX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.4141
MEG-01 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.535
FOXP4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.2618
PHOX2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	69.8558
DMRTC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.0328
SLU7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.10788
ZNF184	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.7503
WSU-DLCL2	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.823
DUXA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	83.5015
BARX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.7248
GSE222758_0_v_2_clofazimine_human	RummaGEO Drug Perturbation Signatures	1.0	null
PHOX2B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	68.36
GATA4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.8316
SOX15	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.3015
ESRRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8108
Medulloblastoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.001
PDCD11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.36035
HOXD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.0554
Reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.128
NR3C1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.5304
KYSE-150 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.221
Atrichia with papular lesions	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.355
PMC12019518-ao5c02459_si_002.xlsx-Table_S3-Table_S3_Screening_of_genes_that_are_commonly_upregulated_in_cells_on_stiff_substrate_and_down-regulated_by_KD_of_UBE2A_B_AR	Rummagene Transcription Factor Associations 2026	1.0	null
PNT-2 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.681
NR6A1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.8242
STAT1::STAT2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	87.1855
DDX27	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.76455
GATA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.6914
GSE85880,GSE85881_4_v_2_tretinoin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
histone H3 demethylase activity	GO Molecular Function Annotations 2025	1.0	null
GSE219195_1_v_3_rbm12_human	RummaGEO Gene Perturbation Signatures	1.0	null
Chromocenter	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.591
regulation of gene expression	GO Biological Process Annotations 2025	1.0	null
Reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.081
Lsd1/2 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.794
LMX1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	62.8204
OTX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.1846
Chromatin	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
PKD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.31307
HOXA5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.1528
THOC2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.11415
nucleus	GO Cellular Component Annotations 2025	1.0	null
NSL complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.664
CUX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.6706
FOXO4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.2628
chromatin organization	GO Biological Process Annotations 2025	1.0	null
FOXB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.8658
TRPS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.2944
intracellular membrane-bounded organelle	GO Cellular Component Annotations 2025	1.0	null
PAX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.716
FLI1::DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.5566
POU1F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	52.0626
DBP	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.7021
NKX6-1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.9489
TTC1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.35869
Hodgkin lymphoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.728
ZNF558	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	150.944
CEBPA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.587
ZSCAN4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.8862
cd86 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.83
GSE148657_2_v_1_cd44_human	RummaGEO Gene Perturbation Signatures	1.0	null
regulation of macromolecule biosynthetic process	GO Biological Process Annotations 2025	1.0	null
chromatin remodeling	GO Biological Process Annotations 2025	1.0	null
FOXK2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.4973
SOX9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.6447
Taurine dioxygenase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.747
ZNF24	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.7614
HOXA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.6208
HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.6489
PROP1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	69.7131
Prostate disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.213
FOXG1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.4086
Primary hyperoxaluria type 1	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.084
PSMG3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.2836
FOXA3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.3526
RAX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.2632
FOXK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.8134
GSC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.0409
NPrEC cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.801
HNF4G	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.3274
CUX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.7723
ZNF214	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.2785
FOXL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.4571
POU3F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.5466
VAX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.9406
GSE160817_7_v_6_slamf6_human	RummaGEO Gene Perturbation Signatures	-1.0	null
ZNF8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	64.9
SNRPG	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.3201
GSE240386,GSE242143_8_v_4_morc2_human	RummaGEO Gene Perturbation Signatures	1.0	null
GATA6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.5734
EVX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.5968
FOXO6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.0981
DUX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.0062
ESRRB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.3617
GSE85880,GSE85881_4_v_1_tretinoin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Brainstem glioma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.291
POU2F1::SOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	65.7694
Male reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.182
Primary hyperoxaluria	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.075
Rh-30 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.869
MYBL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.0286
LMX1A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	57.253
ZNF85	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.3271
BJ cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.521
BARHL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.9995
FOXC1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.2725
HOXC8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.3984
ARGFX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.9293
BHLHE23	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.6119
POU4F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	63.6508
HNF1A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	70.148
POU2F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.5106
TEF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.9583
HOXA4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.5216
GSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	12.9119
PMC5735185-41467_2017_1200_MOESM4_ESM.xlsx-Table_S1-Choi_et_al_2016_DUX4_up-regulated_targets_DUX4	Rummagene Transcription Factor Associations 2026	1.0	null
POU4F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	56.4297
GSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.365
HS-68 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.634
ISL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.0388
VCaP cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.026
HOXB5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.3579
GSE240386,GSE242143_8_v_6_morc2_human	RummaGEO Gene Perturbation Signatures	1.0	null
HNF1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.2557
HESX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.3688
Megakaryoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.663
ZNF189	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.6988
GSC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.404
HOXB6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.0244
NKX2-8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.5087
G-401 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.889
TCF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.5803
POU4F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	52.6875
histone H3K9 demethylase activity	GO Molecular Function Annotations 2025	1.0	null
NR4A2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.2764
Uterine lavage	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.856
Heterochromatin	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.59
NR1I3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.043
PMC5446900-NIHMS72240-supplement-Table_S1.xlsx-Table_S1-Table_S1_Genes_differentially_expressed_in_human_primary_myoblasts_upon_ectopic_expression_of_DUX4_DUX4	Rummagene Transcription Factor Associations 2026	1.0	null
PMC8120133-supplementarytables_ddab063.xlsx-Table_S2-Table_S2_Differentially_expressed_genes_in_DUX4-fl_and_DUX4-s_DUX4	Rummagene Transcription Factor Associations 2026	1.0	null
Prostate cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.215
GSE186647,GSE217287_1_v_3_hnrnpc_human	RummaGEO Gene Perturbation Signatures	1.0	null
FOXP1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.334
DMRTA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.4538
LN-229 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.671
HOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.459
GSE200839,GSE233826_3_v_6_tnrc18_human	RummaGEO Gene Perturbation Signatures	1.0	null
FOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.0788
KDR	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.75817
VAX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.0961
Pericentric heterochromatin	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.781
Calu-6 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.522
HOXB4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.9944
FOXA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.1508