association	dataset	threshold value	standardized value
GSE215086_0_v_1_batf_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE215086_8_v_6_batf_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE146070_1_v_0_edem3_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE185865_0_v_1_celf6_human	RummaGEO Gene Perturbation Signatures	1.0	null
RARB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.2634
GSE128730_4_v_2_neratinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Leaf disc	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.574
GSE193351_4_v_0_ruxolitinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Root apical meristem	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.584
GSE158834_7_v_13_palmitic acid_human	RummaGEO Drug Perturbation Signatures	-1.0	null
E2F4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.3627
Perivitelline space	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.705
GSE197850_4_v_0_glucagon_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE193351_1_v_0_ruxolitinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE158834_7_v_4_palm_human	RummaGEO Gene Perturbation Signatures	-1.0	null
NKX2-8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.1382
MEIS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.3867
TFE3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.0134
GSE239844_6_v_5_crizotinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
RXRG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	49.9979
E2F7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.3439
HOXB8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.9231
ZSCAN4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.3381
BCL6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.1871
GSE113817_0_v_1_bach1_human	RummaGEO Gene Perturbation Signatures	1.0	null
Endoplasmic reticulum tubular network	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.619
NKX2-4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.0116
Prefoldin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.588
PMC11373733-ABR-13-34_Suppl1.pdf-358-KLF9-DT_KLF9	Rummagene Transcription Factor Associations 2026	1.0	null
BSX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.0905
ZBTB7C	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.8766
GSE84678,GSE93902_1_v_2_bcl11b_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE209973_1_v_0_glutamine_human	RummaGEO Drug Perturbation Signatures	1.0	null
NFYA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.2957
PMC12774775-mmc2.xlsx-PAR_RARG_merge_q5_Narrow_subKO-ENSEMBL_ID_RARG	Rummagene Transcription Factor Associations 2026	1.0	null
GSE193402_0_v_4_imatinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE130396_7_v_6_braf_human	RummaGEO Gene Perturbation Signatures	-1.0	null
MITF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.4698
jvm2	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.917
PMC7346435-12864_2020_6860_MOESM6_ESM.xlsx-H1_ZF_Oocyte_Specific-GeneH_CREBZF	Rummagene Transcription Factor Associations 2026	1.0	null
GB-46-CK08_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.237512
ZNF282	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	61.5714
HOXC4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.3851
GSC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.3453
HOXA7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.3233
DLX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.2549
GSE210101,GSE210114_8_v_10_urod_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE135030_11_v_2_fludarabine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Hepatoblastoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.604
ZNF684	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.8225
ONECUT1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.9302
GATA4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.2859
PRDM1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.4415
Tailbud stage	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.647
GTEx Heart 20-29 vs 50-59	GTEx Tissue-Specific Aging Signatures	1.0	3.36273
ARGFX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.8734
ONECUT2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.8849
GSE185519_1_v_0_gilteritinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
beta-catenin-TCF7L2 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.774
GSE239844_4_v_5_crizotinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
chaperonin-containing T-complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.107
TAL1::TCF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.3182
SREBF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	67.0761
DUXA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	70.4217
GSE166920_6_v_4_adalimumab_human	RummaGEO Drug Perturbation Signatures	-1.0	null
KLF13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.415
MAX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.6327
E2F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.042
GSE126463_6_v_2_pomalidomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
SREBF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.3502
GSE154253_1_v_0_tnfaip8_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE196117_1_v_11_clarithromycin_human	RummaGEO Drug Perturbation Signatures	1.0	null
ZNF143	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.66
NKX6-2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.2924
ND-39-PO34_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.322314
GSE172016_2_v_1_paclitaxel_human	RummaGEO Drug Perturbation Signatures	1.0	null
LMX1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.5056
ZNF354C	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.75
GSE182921_0_v_1_slit2_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE158834_7_v_4_palmitic acid_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE166920_6_v_8_adalimumab_human	RummaGEO Drug Perturbation Signatures	-1.0	null
PHOX2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.4509
GSE221327_10_v_11_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE240386,GSE242143_1_v_5_morc2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE239844_7_v_5_crizotinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
GFI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.9777
NKX2-3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.3015
PMC10925000-12885_2024_12075_MOESM2_ESM.pdf-2-JUNB_JUNB	Rummagene Transcription Factor Associations 2026	1.0	null
OC-10-FB51_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	-1.0	-0.208065
GSE130396_7_v_6_neratinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Hypodermis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.976
Common cardinal vein	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.825
SNAI2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.9187
TEAD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.9741
HOXB2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.0566
GSE150895,GSE150896_0_v_1_enzalutamide_human	RummaGEO Drug Perturbation Signatures	1.0	null
VEZF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.7336
BACH2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.3808
HESX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.1591
GSE133286,GSE133299_1_v_0_tepoxalin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GATA6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.3775
HOXC10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.226
SHOX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.3872
GSE242290_1_v_10_glutathione_human	RummaGEO Drug Perturbation Signatures	1.0	null
HOXA10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.818
GSE126463_6_v_3_pomalidomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
PMC12455829-11658_2025_792_MOESM8_ESM.xlsx-2_DDIT3_IP_vs_BRG1_IP-Supplementary_Table_7_Transcription_factors_DDIT3	Rummagene Transcription Factor Associations 2026	1.0	null
GSE166920_6_v_1_adalimumab_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE142430_3_v_0_prmt5_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE186471_1_v_2_carnosol_human	RummaGEO Drug Perturbation Signatures	-1.0	null
LMX1A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.1188
GSE178532_1_v_3_cisplatin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Wart	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.685
PMC10769395-media-8.xlsx-S8D_ETS1_ETS1-ChIP_up-Ebegboni_et_al_Supplemental_Table_S8D_Genes_increased_following_the_ectopic_expression_of_ETS1_and_bound_by_ETS1_ETS1	Rummagene Transcription Factor Associations 2026	1.0	null
Endoplasmic reticulum quality control compartment	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.823
DUX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.8266
PROP1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.6873
BARX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.4731
RELB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.7061
Gillespie syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.134
PBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.0556
ZNF24	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	82.2755
Cortical endoplasmic reticulum	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.633
Posterior cardinal vein	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.769
CNE-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.131
GTEx Heart 20-29 vs 30-39	GTEx Tissue-Specific Aging Signatures	1.0	3.08942
GSE227698_2_v_3_g0s2_human	RummaGEO Gene Perturbation Signatures	1.0	null
RARG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.2674
TEAD4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.8177
PMC8812561-pnas.2110428119.sd11.xlsx-Sheet1-The_overlapping_genes_of_LCDR_KD_RNA-seq_hnRNP_K_KD_RNA-seq_hnRNP_K_RIP-seq_and_eCLIP-seq_AR	Rummagene Transcription Factor Associations 2026	1.0	null
PMC12774775-mmc2.xlsx-PAR_RARG_merge_q5_Narrow_subKO-Gene_Symbol_RARG	Rummagene Transcription Factor Associations 2026	1.0	null
GABPA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.393
MSC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.6217
ZNF707	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	52.764
GSE158834_7_v_13_palm_human	RummaGEO Gene Perturbation Signatures	-1.0	null
HOXB3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.6629
TSC1-TSC2 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.327
MAF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.7567
RHOXF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.1509
ZNF410	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.9114
GSE166920_6_v_3_adalimumab_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Animal cap	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.618
GSE238018_3_v_0_mxra8_human	RummaGEO Gene Perturbation Signatures	1.0	null
ZNF214	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.9512
TRPS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.1746
NKX6-1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.7235
GSE228106_3_v_4_paclitaxel_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE215086_1_v_6_batf_human	RummaGEO Gene Perturbation Signatures	-1.0	null
DB-54-GQ68_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.339374
M1 melanoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.658
CX-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.81
PHOX2B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.8525
E2F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.0015
GSE217526_0_v_1_parthenolide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
TD-29-IN36_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	-1.0	-0.259058
ELF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.7087
GSE215086_8_v_0_batf_human	RummaGEO Gene Perturbation Signatures	-1.0	null
SPIB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.7603
GSE242199_9_v_7_ntrk2_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE158834_7_v_5_palmitic acid_human	RummaGEO Drug Perturbation Signatures	-1.0	null
ZNF449	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.5325
GSE166783_4_v_2_tp53_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE153871_1_v_2_cytarabine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
EN2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.9097
NFYC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.0545
Hypodermal seam cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.366
HOXD4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.4959
GSE153871_1_v_3_cytarabine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
catenin-TCF7L2 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.773
FOXH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.6547
USF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.0566