association	dataset	threshold value	standardized value
Kidney renal papillary cell carcinoma_KIRP_TCGA-DZ-6131-01A-11R-1965-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
TEN	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34658
BRD-K57167256	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.34087
Disease of mental health	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.023
Hair shaft	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.108
BRD-A77292814	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.37501
adult stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.075793
cerebellum_13 pcw_M_12888	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.00621
Leaf disc	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.853
inferolateral temporal cortex (area TEv, area 20)_12 pcw_F_12960	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.98877
STAT3	JASPAR Predicted Transcription Factor Targets	1.0	null
primary auditory cortex (core)_12 pcw_F_13060	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.04674
sensory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042313
BRD-K00191683	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.18262
BRD-K95148987	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.26085
BRD-K71501826	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.13084
igm b cell receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.302912
vascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.063402
BCL2L11	LINCS L1000 CMAP CRISPR Knockout Consensus Signatures	1.0	0.00702764
CRCGN017_MCF10A.WT.HP_24H:H24	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.8293
Prostate adenocarcinoma_PRAD_TCGA-CH-5771-01A-21R-1580-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
H3K9me3_osteoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
EFM-192B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06313
common cold	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.08202
CRCGN010_HEPG2_24H:H24	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.7188
WSU-NHL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.30317
BRD-K97337407	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.3916
CRCGN015_MCF10A.WT.HP_24H:G06	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.45479
Hair follicle inner root sheath	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.597
receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.05449
BRD-K61451401	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.5146
TFAP4::FLI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	88.2142
496100442_PCx_possible Alzheimer's disease_no TBI_95-99_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.14087
BRD-K09721398	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.87019
PL45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.46116
HSF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.5391
hsa-miR-3646	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
Plant cell papilla	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.116
BRD-K91039552	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.19391
BRD-K44139682	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.22584
BRD-K92581247	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.28563
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.980651
BRD-K05902089	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.11352
EVSA-T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.907443
anterior (rostral) cingulate (medial prefrontal) cortex_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.877859
P2RX7	LINCS L1000 CMAP CRISPR Knockout Consensus Signatures	1.0	0.00385494
BRD-K71415389	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.61251
MDA MB435	BioGPS Cell Line Gene Expression Profiles	1.0	1.07366
ZNF382	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	47.4337
NEUROG2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.981
SuperiorCervicalGanglion	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	2.2603
HCC1419	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36591
hippocampus (hippocampal formation)_13 pcw_M_12888	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.891598
BRD-K12328371	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.32589
PMC6344081-elife-40364-supp8.xlsx-PLZF-kd_2d_Diff_Vs_Ctrl_2d-diff-Symbol_ZBTB16	Rummagene Transcription Factor Associations 2026	1.0	null
cytoskeletal part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.043995
CTCF_MCF-7_hg19_8	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BRD-K18316646	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.38719
cell part	GO Cellular Component Annotations 2015	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-5201-01A-01R-1426-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MTHFR	LINCS L1000 CMAP CRISPR Knockout Consensus Signatures	1.0	0.0046439
G-protein beta/gamma-subunit complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.574
BRD-K06994380	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.28131
OVCAR433	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.971063
hsa-miR-3689e	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
ERF::FIGLA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	79.5048
HCC1143	CCLE Cell Line Gene CNV Profiles	-1.0	-1.42342
HUPT3	CCLE Cell Line Gene CNV Profiles	1.0	1.46495
BRD-K77601667	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.20564
MDAMB453	CCLE Cell Line Gene CNV Profiles	-1.0	-1.71107
epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058868
ri1	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.219
cytosolic part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.070782
cobalt chloride-454	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
posterior (caudal) superior temporal cortex (area 22c)_12 pcw_F_13060	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.3786
TC138	DepMap CRISPR Gene Dependency	1.0	5.0098
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.29608
BRD-K09258973	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.01822
496100341_TCx_no dementia_no TBI_81_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.94361
CTCF_keratinocyte_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BRD-K19958830	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.23787
BRD-K34382498	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-5.0674
primary visual cortex (striate cortex, area V1/17)_12 pcw_F_13060	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.904118
CRCGN015_MCF10A.TP53.M_24H:D06	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.05406
BRD-K39030761	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.77838
H2AFZ_CD14-positive monocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hyperostosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.269398
Prostate adenocarcinoma_PRAD_TCGA-EJ-7314-01A-31R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K17686226	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.21642
EW8	DepMap CRISPR Gene Dependency	1.0	2.56346
beas-2b cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.39881
BRD-K03733288	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.86447
germ layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061973
BRD-K25993054	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.2429
BRD-K02535446	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.02149
CTCF_keratinocyte_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me2_osteoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
lymphoid cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.00501
epidermal cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.233162
SREBF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.4449
TSSK4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.98452
Oviductal fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.769
mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056469
Prothallium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.039
MDA-MB-468	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.86487
uterus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059207
Pectoral fin	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.861
BRD-K84690141	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.22419
NCIN87	CCLE Cell Line Gene CNV Profiles	1.0	2.80661
GCIY	CCLE Cell Line Gene Expression Profiles	1.0	1.41106
primary motor cortex (area M1, area 4)_13 pcw_M_12888	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.923097
GSE220806_0_v_3_progesterone_human	RummaGEO Drug Perturbation Signatures	1.0	null
BRD-K67856917	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.10385
BRD-K00507184	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.01826
BRD-K48845054	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.31615
BRD-K18865369	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.29377
BRD-K28640166	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.12818
BRD-K78658063	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.33829
BRD-K84077642	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.26011
posterior (caudal) superior temporal cortex (area 22c)_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.12997
respiratory system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.497266
SMC3_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
imatinib_homo sapiens_gpl96_gds3042	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
skeletal system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.501574
BRD-K49847771	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.45549
OVMIU	DepMap CRISPR Gene Dependency	1.0	2.43613
internal female genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052978
BRD-K73802986	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.31643
HCC1599	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.56679
organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
EVSAT	DepMap CRISPR Gene Dependency	1.0	2.7364
BRD-K14756138	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.17961
Lymphatic system cancer	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.264
BRD-K71737889	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.31109
hsa-miR-125a-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
COLO792	CCLE Cell Line Gene CNV Profiles	-1.0	-2.16817
Talus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.067
MAFA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.5259
membrane part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.045482
DAN-G	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.971063
COLO 699	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10255
CRCGN017_MCF10A.WT.HP_24H:E15	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.06115
BRD-K39491844	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.15581
intracellular non-membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.351002
Pulmonary embolism and infarction	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.19
primary auditory cortex (core)_4 mos_M_12296	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.862096
Cortical layer of collagen and cuticulin-based cuticle extracellular matrix	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.57
BRD-K89806367	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.38858
BRD-K24532125	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.5251
BRD-K53772256	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.6648
icSARS CoV_54Hour_23365422_GSE33267	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	0.870829
Symplast	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.717
MYC_MCF-7_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hsa-miR-4735-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
OVCAR8	BioGPS Cell Line Gene Expression Profiles	-1.0	-0.837535
BRD-K95798946	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.73238
BRD-K21547369	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.4489
cervical epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.329727
C32	DepMap CRISPR Gene Dependency	1.0	6.21117
BRD-K57274378	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.03329
orbital frontal cortex_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.848984
MEWO	COSMIC Cell Line Gene Mutation Profiles	1.0	null
great saphenous vein	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.773174
inferolateral temporal cortex (area TEv, area 20)_37 yrs_M_12303	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.50473
BRD-K26941844	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.31598
CTCF_fibroblast of dermis_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-CS-6669-01A-11R-1896-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cytosolic ribosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.614165
nucleoid	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.163641
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-FU-A3HZ-01A-11R-A213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SARS-CoV_0Hour_23935999_GSE47961	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.72713
mediodorsal nucleus of thalamus_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.31849
BRD-K07870648	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.13575
BRD-K02809100	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.11168
HS870T	CCLE Cell Line Gene Expression Profiles	1.0	1.84966
MYC_MCF-7_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hsa-miR-576-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
BRD-K88000297	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.46048
H3K4me1_myotube_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
SNRPG	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.3201
blood vessel	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.276495
USF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.3616
dorsolateral prefrontal cortex_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.62936
Sarcoma_SARC_TCGA-KF-A41W-01A-11R-A24X-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cytoplasm	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.142898
ribosomal subunit	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.160658
BRD-K96637144	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.14472
Usher syndrome type 3A	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.155
CTCF_fibroblast of pedal digit skin_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RFX5	ENCODE Transcription Factor Targets	1.0	null
BRD-K34005205	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.02095
GSE193993_5_v_6_sstr2_human	RummaGEO Gene Perturbation Signatures	1.0	null
RD	CCLE Cell Line Gene Expression Profiles	-1.0	-1.88833
BRD-K81144230	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.51683
GSE145639_1_v_6_adar_human	RummaGEO Gene Perturbation Signatures	1.0	null
Rectum adenocarcinoma_READ_TCGA-AG-3742-01A-11R-1660-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K18313650	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.35819
BRD-K87712055	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.78668
CRCGN015_MCF10A.WT.HP_24H:P12	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.25868
BRD-K50950731	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.40358
MYC	ENCODE Transcription Factor Targets	1.0	null
BRD-K56912308	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.03366
chromosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.196669
H3K9ac_Penis Foreskin Keratinocyte Primary Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
hsa-miR-4474-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
NCIH2106	CCLE Cell Line Gene Expression Profiles	-1.0	-2.47665
BRD-K90294313	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.06194
ETV2::FIGLA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	85.8547
icSARA deltaORF6_72Hour_23365422_GSE33267	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.3272
PFEIFFER	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.97149
PMC5322933-pone.0172430.s013.xls-HG_MSC_Single_Basal_vs_MSC_AD_B-Unnamed_1_MSC	Rummagene Transcription Factor Associations 2026	1.0	null
head	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.280364
BRD-K96491043	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.16536
Kidney Chromophobe_KICH_TCGA-KL-8336-11A-01R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CRCGN015_MCF10A.WT.HP_24H:J23	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.01598
BRD-K63364685	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.38166
MDAMB361	DepMap CRISPR Gene Dependency	1.0	2.29041
CTCF_epithelial cell of proximal tubule_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
l23	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.949
EFM-19	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.33673
BRD-K71607378	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.30005
Hematologic cancer	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.264
Bladder Urothelial Carcinoma_BLCA_TCGA-ZF-A9R9-01A-11R-A38B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
JUND	JASPAR Predicted Transcription Factor Targets	1.0	null
Hybridoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.287
Morris hepatoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.609
cellular_component	GO Cellular Component Annotations 2015	1.0	null
leg muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.082203
Pollen coat	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.591
Pheochromocytoma and Paraganglioma_PCPG_TCGA-WB-A80V-01A-12R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCIH1184	CCLE Cell Line Gene CNV Profiles	1.0	1.5258
HCC202	COSMIC Cell Line Gene Mutation Profiles	1.0	null
FIGLA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.1332
CAPAN-1	COSMIC Cell Line Gene CNV Profiles	1.0	2.93899
BRD-K04875192	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.27737
BRD-K69659917	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.76139
Pancreatic adenocarcinoma_PAAD_TCGA-3A-A9I5-01A-11R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K80098154	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.37866
BRD-K20026212	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.69218
BRD-K28953184	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.04677
COV504	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.22516
BRD-K48358706	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.11774
BMP receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.367
intracellular	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.269701
OVCA 420	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24985
blood protein disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.162908
BRD-K45062933	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.35306
BRD-K17979415	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.01279
CRCGN017_MCF10A.TP53.M_24H:E13	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.08585
H2AFZ_skeletal muscle myoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RFX5_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BRD-K48171978	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.00987
NHLH2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	70.961
BRD-K39193666	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.26848
pole plasm	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.382739
blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.849165
HCC1171	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.848053
BICR31	CCLE Cell Line Gene CNV Profiles	1.0	1.47992
BRD-K49903196	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.00245
496100636_FWM_probable Alzheimer's disease_no TBI_86_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.74461
Nonpigmented ciliary epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.908
SNU-81	COSMIC Cell Line Gene Mutation Profiles	1.0	null
fiber	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.345558
dexamethasone_homo sapiens_gpl6244_gse20963	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Tumor Cell Invasion	DisGeNET Gene-Phenotype Associations	1.0	null
Nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.163
primary auditory cortex (core)_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.850817
Hair follicle outer root sheath	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.686
KARPAS-620	COSMIC Cell Line Gene Mutation Profiles	1.0	null
MALME3M	DepMap CRISPR Gene Dependency	1.0	2.9742
NUGC-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.43202
Suprachiasmatic nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.093
BRD-K50931403	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.27993
A-Vietnam-1203-2004(H5N1)_3Hour_21865398_GSE28166	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.97945
ZSCAN31	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.3249
CRCGN016_MCF10A.WT.HP_24H:C20	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.26336
A-Vietnam-1203_CIP048_RG3-2004(H5N1)mutPB1-F2del_18Hour_None_GSE43203	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.52722
BRD-K80381603	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.34085
hsa-miR-3689f	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
BRD-K05417183	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.1878
Prostate adenocarcinoma_PRAD_TCGA-XJ-A83H-01A-11R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lung adenocarcinoma_LUAD_TCGA-50-6597-01A-11R-1858-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hsa-miR-18b	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
Ebolavirus(EBOV)_6day_PBMCs_17725815_GSE8317	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-2.64238
CRCGN017_MCF10A.WT.HP_24H:C21	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.04875
dorsolateral prefrontal cortex_13 pcw_M_12888	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.848117
hippocampus (hippocampal formation)_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.927508
respiratory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.570718
BRD-K27323347	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.75979
BRD-K62964360	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.04784
BRD-K90594901	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.10763
CRCGN011_HEPG2_24H:G13	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.0817
BRD-K35124958	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.80706
CRCGN016_MCF10A.WT.HP_24H:H08	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.56524
POLR2AphosphoS2_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BRD-K26603007	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.49462
KYAE-1	COSMIC Cell Line Gene CNV Profiles	1.0	2.93899
PMC11266694-41698_2024_651_MOESM1_ESM.pdf-2-ZNF469_ZNF469	Rummagene Transcription Factor Associations 2026	1.0	null
SMC3	ENCODE Transcription Factor Targets	1.0	null
BRD-K87275815	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.19913
polymorphisms	GeneRIF Biological Term Annotations	1.0	null
BRD-K30436657	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.3023
POLR2A_MCF-7_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ASCL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	68.5237
BRD-K61623863	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.07722
orbital frontal cortex_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.78579
MYC_MCF-7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CHP-212	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.40655
BRD-K26748243	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.14239
Superficial temporal vein	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.598
496100527_FWM_possible Alzheimer's disease_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.1104
COR-L88	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.26499
BRD-K60907484	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.32382
CRCGN012_HEPG2_24H:D09	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.24245
Histone mRNA stem-loop binding complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.104
CRCGN015_MCF10A_48H:P13	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.22371
BRD-K40841951	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.05402
BCPAP	COSMIC Cell Line Gene Mutation Profiles	1.0	null
stem	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.376494
mitochondrial nucleoid	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.168101
Lung adenocarcinoma_LUAD_TCGA-49-4490-01A-21R-1858-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
18451145-TableS1	GeneSigDB Published Gene Signatures	1.0	null
estradiol_homo sapiens_gpl14550_gse35034	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
BRD-K16267084	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.1034
head	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Jugular vein	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.971
PMC4686761-ncomms10068-s3.xlsx-S2E-MSC_up_specific-Supplementary_Data_2E_-_expression_of_up-regulated_genes_2_fold_change_specifically_in_MSC_PTEN-_-_vs_MSC_PTEN_MSC	Rummagene Transcription Factor Associations 2026	1.0	null
Primary cell wall	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.796
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.03917
HS737T	CCLE Cell Line Gene Expression Profiles	1.0	2.31746
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-6938-11A-01R-1915-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K08409548	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.13848
BRD-K84741596	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.25119
NCI-H1299	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.929983
IKZF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.23779
BRD-K97707303	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.12022
BRD-K46726368	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.22812
BRD-K51104732	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.42768
GSE235605,GSE235701_0_v_1_enasidenib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Brain Lower Grade Glioma_LGG_TCGA-TQ-A7RU-01A-21R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
orbital frontal cortex_13 pcw_M_12888	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.28593
NEUROD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.7621
SU-DHL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.34457
Lung adenocarcinoma_LUAD_TCGA-05-4402-01A-01R-1206-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC9232687-13238_2021_887_MOESM3_ESM.xlsx-37_KD_sgCDC20_vs_sgNTC-Unnamed_1_AR	Rummagene Transcription Factor Associations 2026	1.0	null
ZR7530	CCLE Cell Line Gene CNV Profiles	-1.0	-1.50126
peripheral nerve sheath neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.364454
nuclear chromosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.131907
CTCF_pancreas_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EM2	CCLE Cell Line Gene CNV Profiles	1.0	1.56786
organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.237401
Kidney renal clear cell carcinoma_KIRC_TCGA-CZ-5988-01A-11R-1672-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CRCGN016_MCF10A.WT.HP_24H:C19	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	6.94015
Carcinogenesis	DisGeNET Gene-Phenotype Associations	1.0	null
Vermiform appendix	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.064
BRD-K56661847	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.07418
Prostate adenocarcinoma_PRAD_TCGA-CH-5769-01A-11R-1580-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Gizzard	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.176
LC1SQ	DepMap CRISPR Gene Dependency	1.0	4.05298
SK-BR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.28783
striatum_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.37551
GM2493	BioGPS Cell Line Gene Expression Profiles	1.0	1.67882
BRD-K26005379	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.02948
CTCF	ENCODE Transcription Factor Targets	1.0	null
Keratin filament	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.122
SARS-CoV MA15_Day4-PFU-10^2_None_GSE33266	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	2.23247
NHLH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	102.337
BRD-K43674766	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.14823
BRD-K63587749	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.05957
RMG-I	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.934142
BRD-K84210390	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.87921
embryonic structure	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054934
BRD-K46949676	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.55197
BRD-K57228212	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.30608
Aerial root	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.677
CTCF_medulloblastoma_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27me3_CD14-positive monocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MYOG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	84.0704
posterior (caudal) superior temporal cortex (area 22c)_23 yrs_M_12300	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.04297
H2AFZ_fibroblast of lung_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Stomach Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
HEC-1-A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.973752
primary motor cortex (area M1, area 4)_24 pcw_M_12288	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.06286
BRD-K07438795	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.45214
CRCGN009_HEPG2_24H:N04	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.44755
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.735838
posteroventral (inferior) parietal cortex_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.29235
individuals	GeneRIF Biological Term Annotations	1.0	null
CRCGN015_MCF10A.TP53.M_24H:O07	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.5177
hsa-miR-3689b	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
BRD-K25907192	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.39199
peritoneal exudate	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.219485
BRD-K62800316	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.95983
PMC6344081-elife-40364-supp8.xlsx-PLZF-Si-diff-expressed-gen-Down-Symbol_ZBTB16	Rummagene Transcription Factor Associations 2026	1.0	null
central nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051486
ONECUT1	Pathway Commons Protein-Protein Interactions	1.0	null
JHU-029	COSMIC Cell Line Gene Mutation Profiles	1.0	null
CRCGN015_MCF10A.WT.HP_24H:P13	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.50648
BRD-K49419779	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.00818
inferolateral temporal cortex (area TEv, area 20)_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.08289
TENM3	LINCS L1000 CMAP CRISPR Knockout Consensus Signatures	-1.0	-0.00366695
JHH-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24282
CRCGN015_HEPG2_48H:G15	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	7.57092
PMC10170086-41598_2023_34519_MOESM6_ESM.xlsx-Sheet3-The_overlapping_genes_between_significantly_co-expressed_genes_and_significantly_differentially_expressed_genes_of_BARX2_in_LIHC_BARX2	Rummagene Transcription Factor Associations 2026	1.0	null
TAL1::TCF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.6364
pleural cavity	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.443731
BRD-K80736363	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.49969
BRD-K85741537	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.35919
AtrioventricularNode	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	1.34118
MS-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
ETV5::FIGLA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	108.141
SNU878	CCLE Cell Line Gene Expression Profiles	1.0	1.77255
BRD-K16264250	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.35388
CRCGN017_MCF10A.WT.HP_24H:N22	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.3984
UM-UC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.15933
Pancreatic adenocarcinoma_PAAD_TCGA-LB-A8F3-01A-11R-A36G-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
intermediate filament	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
hsa-miR-23b	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
EN	COSMIC Cell Line Gene Mutation Profiles	1.0	null
A-673	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.75525
HS839T	CCLE Cell Line Gene Expression Profiles	1.0	1.7805
lymphoid follicle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.435289
H3K9me3_HepG2_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
YY1	JASPAR Predicted Transcription Factor Targets	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-DD-AA3A-01A-11R-A37K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K06330738	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.06375
GSE145639_7_v_6_adar_human	RummaGEO Gene Perturbation Signatures	1.0	null
BRD-K32195266	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.23389
BRD-K83846772	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.09937
BRD-K74641261	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.18753
BRD-K06614664	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.04828
OAW42	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.88146
female reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051636
hindlimb	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.068938
hsa-miR-653	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
PMC7302877-elife-57679-supp3.xls-HuRI_ZNF446_interactors-Ensembl_ID_ZNF446	Rummagene Transcription Factor Associations 2026	1.0	null
BRD-K04712840	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.38329
BFTC909	DepMap CRISPR Gene Dependency	1.0	3.05097
MHH-ES-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.039
Brain Lower Grade Glioma_LGG_TCGA-DU-5847-01A-11R-1708-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hsa-miR-18a	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
MPF complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.663
ZNF547	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.2174
cardiovascular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.291365
KP-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.86487
neurofibroma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.454847
496100283_PCx_probable Alzheimer's disease_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.39858
blast cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.088013
Genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.078
Synergid cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.589
hsa-miR-4320	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
BHT101	CCLE Cell Line Gene Expression Profiles	-1.0	-1.59817
H3K79me2_osteoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
TFAP4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	85.968
BRD-K59843356	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.96725
BRD-K17753780	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.07171
DOR 13	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.57393
Rectum adenocarcinoma_READ_TCGA-AG-4021-01A-01R-1736-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CAPAN-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.44112
Liver hepatocellular carcinoma_LIHC_TCGA-FV-A2QR-11A-11R-A213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-CH-5743-01A-21R-1580-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K13543055	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.00718
GSE184087_0_v_3_tert_human	RummaGEO Gene Perturbation Signatures	1.0	null
Endospore external encapsulating structure	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.745
forelimb	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.066956
upper respiratory tract disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.897051
NCI-H2795	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.52709
BRD-K96619480	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.81466
Amylin receptor complex 3	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.561
GSE193993_1_v_6_sstr2_human	RummaGEO Gene Perturbation Signatures	1.0	null
intermediate filament	GO Cellular Component Annotations 2015	1.0	null
SK-MEL-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11799
periderm	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.629506
pancreas	GTEx Tissue Gene Expression Profiles	1.0	0.935143
Myometrial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.551
Exosporium	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.781
PMC5322933-pone.0172430.s013.xls-Pathways_MSC_Single_Basal_vs_MS-Unnamed_1_MSC	Rummagene Transcription Factor Associations 2026	1.0	null
nuclear part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041581
POLR2A_MCF-7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_fibroblast of skin of abdomen_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BRD-K66214486	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.05544
BRD-K89476396	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.00206
whole body	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
intermediate filament cytoskeleton	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
CAS1	CCLE Cell Line Gene Expression Profiles	1.0	1.43157
BRD-K17209411	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.10383
CALU3	CCLE Cell Line Gene CNV Profiles	1.0	2.18689
Cell septum	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.261
Lumbar spine	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.952
Hepatic stellate cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.521
OKAJIMA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04211
BACH2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.0654
CRCGN015_MCF10A_48H:H03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.00338
nose disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.591727
otitis media	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.289027
peyer's gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.302478
NCIH1993	DepMap CRISPR Gene Dependency	1.0	2.08149
PMC7302877-elife-57679-supp3.xls-HuRI_ZNF446_interactors-Gene_Name_ZNF446	Rummagene Transcription Factor Associations 2026	1.0	null
H3K9me3_mononuclear cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Trypomastigote	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.542
convolamine-1779	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Ebolavirus(EBOV)_3day_PBMCs_17725815_GSE8317	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	2.11742
biological_process	GO Biological Process Annotations 2015	1.0	null
H3K9me3_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
BRD-K11487484	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.11792
OVCA 432	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.865548
cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.257005
H3K9ac_Adipose Derived Mesenchymal Stem Cell Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
sex chromosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.112326
Mesothelioma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.597
BRD-K67626198	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.22773
inferolateral temporal cortex (area TEv, area 20)_13 pcw_M_12820	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.35261
BRD-K31608682	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.37233
PMC5322933-pone.0172430.s013.xls-Oncopath_MSC_Single_Basal_vs_MS-Unnamed_1_MSC	Rummagene Transcription Factor Associations 2026	1.0	null
BRD-K23164928	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.31801
BRD-K15532741	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.70961
BRD-K44265418	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.2047
SKBR3	CCLE Cell Line Gene CNV Profiles	1.0	2.7108
Brain Lower Grade Glioma_LGG_TCGA-E1-A7YE-01A-11R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
WM115	DepMap CRISPR Gene Dependency	1.0	6.78301
EXTL2	LINCS L1000 CMAP CRISPR Knockout Consensus Signatures	-1.0	-0.00557859
krtap111	GeneRIF Biological Term Annotations	1.0	null
peritoneal cavity	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.647316
amygdaloid complex_13 pcw_M_12888	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.01212
NCI-H596	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.01076
bronchoalveolar system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.259591
BRD-K56131419	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.3927
peripheral vascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.299092
medium spiny neuron	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.348889
hippocampus (hippocampal formation)_3 yrs_F_12836	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.31263
BRD-K09304381	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.9593
bone remodeling disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.065036
OVCAR-3	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GSE111061_1_v_0_tofacitinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
dorsolateral prefrontal cortex_12 pcw_F_12835	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.11363
TBX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.7112
cellular_component	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.371599
AMO-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
endocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052133
BRD-K89744662	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.06319
BRD-K95459450	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.03215
striatum_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.05615
KMOE-2	COSMIC Cell Line Gene Mutation Profiles	1.0	null
H3K36me3_osteoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
abdomen	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.822757
hsa-miR-3148	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.13535
HCC1897	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33966
496100555_TCx_no dementia_no TBI_87_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.94155
skeletal muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056152
GSE145639_7_v_2_adar_human	RummaGEO Gene Perturbation Signatures	1.0	null
CH157MN	DepMap CRISPR Gene Dependency	1.0	2.90225
BRD-K87472370	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.71013
19840643-Table2	GeneSigDB Published Gene Signatures	1.0	null
HCC1428	CCLE Cell Line Gene CNV Profiles	-1.0	-1.32959
mitochondrial part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.057323
annuli extracellular matrix	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.21124
BRD-K94275706	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.23434
A-Vietnam-1203-2004(H5N1)_7Hour_None_GSE43204	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-2.47534
TEAD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.029
tooth	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.238706
BRD-K41241300	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.26023
primary auditory cortex (core)_30 yrs_F_12290	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.91961
Fetallung	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-0.842678
BRD-K32535831	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.45164
artery disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.060297
POU4F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.0297
reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051124
BRD-K23442578	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.11028
GSE220806_1_v_3_progesterone_human	RummaGEO Drug Perturbation Signatures	1.0	null
ATF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.2524
hematopoietic system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.05412
Pons	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	1.49093
Liver hepatocellular carcinoma_LIHC_TCGA-BC-A10W-11A-11R-A131-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCIH1694	CCLE Cell Line Gene Expression Profiles	-1.0	-2.19328
thigh	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.125349
Nerve ring	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.587
physical disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.074797
CTCF_foreskin fibroblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Lower respiratory tract disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.141
CRCGN016_MCF10A.WT.HP_24H:P22	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.8984
Brain Lower Grade Glioma_LGG_TCGA-HT-8015-01B-11R-A28M-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K30674856	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.79209
BRD-K89637567	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.48419
respiratory mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.126628
BRD-K16526787	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.55347
shoot	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.415434
NTERA2CLD1	DepMap CRISPR Gene Dependency	1.0	4.0671
macromolecular complex	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
plant reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.149836
L-540	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BRD-K42185771	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.52868
t-lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.499223
extracellular matrix	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.106531
REST	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	115.189
cell	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
MM160113	DepMap CRISPR Gene Dependency	1.0	5.07247
BRD-K73540839	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.15211
19840643-Table1	GeneSigDB Published Gene Signatures	1.0	null
POLR2A_HGPS cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.225
BRD-K91459693	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.19847
Node	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.96
Cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.032
SUDHL1	CCLE Cell Line Gene CNV Profiles	1.0	2.0873
Kidney renal clear cell carcinoma_KIRC_TCGA-A3-A8OX-01A-11R-A37O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MON	DepMap CRISPR Gene Dependency	1.0	3.00772
organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.180084
BRD-K00566460	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.06213
Osteoarthritis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.18
BRD-K14392329	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.07868
BRD-K26272845	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.48937
BRD-K68424387	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.00581
CRCGN008_HEPG2_24H:K11	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.3525
Stigma papilla	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.117
HCC1011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.01138
hematopoietic stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.223662
amygdaloid complex_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.955359
MEIS2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.2387
Adrenocortical carcinoma_ACC_TCGA-OR-A5JJ-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CCRT CEM	BioGPS Cell Line Gene Expression Profiles	1.0	1.26182
BRD-K20470077	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.38435
BRD-K77594363	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.60789
BRD-K67508052	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.50232
BMP2	LINCS L1000 CMAP CRISPR Knockout Consensus Signatures	-1.0	-0.00592717
lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.00676
icSARS CoV_48Hour_23365422_GSE33267	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	0.900955
Uterus	GTEx Tissue Gene Expression Profiles 2023	1.0	1.32388
Preprophase band	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.711
amygdaloid complex_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.91612
BRD-K90255725	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.98784
TGBC1TKB	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BRD-K89820077	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.00301
HAND2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.7451
PLC/PRF/5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07454
nasal mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.169574
skin	GTEx Tissue Gene Expression Profiles	1.0	2.18987
GSE145639_1_v_4_adar_human	RummaGEO Gene Perturbation Signatures	1.0	null
cell part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
nose	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.118923
assembly	GeneRIF Biological Term Annotations	1.0	null
TYK-NU.CP-R	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.28368
Dendritic spine neck	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.749
vascular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.259254
intracellular part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
Disease by infectious agent	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.385
Uterine Carcinosarcoma_UCS_TCGA-N8-A56S-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
caucasian	GeneRIF Biological Term Annotations	1.0	null
OVCA420	COSMIC Cell Line Gene CNV Profiles	1.0	2.93899
Liver hepatocellular carcinoma_LIHC_TCGA-BC-A10U-11A-11R-A131-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
occipital neocortex_8 pcw_M_13058	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.24601
BRD-K40292034	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.51029
skin	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
OSR2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	94.8341
icSARS CoV_72Hour_None_GSE37827	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.33249
NALM6	DepMap CRISPR Gene Dependency	1.0	4.42276
hsa-miR-23c	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
A-CA-04-2009(H1N1)_30Hour_None_GSE37571	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.66072
BRD-K23430426	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.9572
NIHOVCAR3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.38396
KDM5A_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Cardiomyopathy_Myocardial tissue_GSE5406	GEO Signatures of Differentially Expressed Genes for Diseases	-1.0	-1.43427
Head	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
macromolecular complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.243158
neuron	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.067572
NCI-H1838	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.15799
p190	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.688
MYF5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	52.6687
HOXA5	JASPAR Predicted Transcription Factor Targets	1.0	null
posteroventral (inferior) parietal cortex_23 yrs_M_12300	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.934893
hsa-miR-1258	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
KELLY	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.30662
Prostate adenocarcinoma_PRAD_TCGA-J4-A67Q-01A-21R-A30B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K40361885	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.74628
COLO 792	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.88146
Prostate adenocarcinoma_PRAD_TCGA-G9-6356-11A-01R-1789-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hsa-miR-3145-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
CRCGN014_HEPG2_3H:H01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.0601
BRD-K69487461	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.52763
H3K4me1_Adipose Derived Mesenchymal Stem Cell Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
epidermis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.573616
Ovary	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-1.45687
organelle part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
lymphoid progenitor cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.625061
PMC11442894-41467_2024_52678_MOESM5_ESM.xlsx-all_MSC_vs_iMPC-Unnamed_0_MSC	Rummagene Transcription Factor Associations 2026	1.0	null
PMC3172216-pone.0023082.s005.xlsx-EGR1_expression_table_txt-CLID_EGR1	Rummagene Transcription Factor Associations 2026	1.0	null
BRD-K30863464	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.07744
hsa-miR-1267	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
collagen trimer	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.104102
Prostate	GTEx Tissue Gene Expression Profiles 2023	1.0	6.08983
JHOM2B	CCLE Cell Line Gene Expression Profiles	-1.0	-1.45323
BRD-K83942575	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.47704
CFPAC1	CCLE Cell Line Gene CNV Profiles	1.0	1.48881
Liver hepatocellular carcinoma_LIHC_TCGA-FV-A3I0-01A-11R-A22L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Rectum adenocarcinoma_READ_TCGA-DY-A1DD-01A-21R-A155-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K96249452	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.00042
CJM	DepMap CRISPR Gene Dependency	1.0	2.30289
skin	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.573217
bronchiolitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.436402
T84	DepMap CRISPR Gene Dependency	1.0	3.27044
Brain Lower Grade Glioma_LGG_TCGA-HT-8011-01A-11R-2403-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HCC1419	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.46064
NCIH2882	DepMap CRISPR Gene Dependency	1.0	4.64451
M140325	DepMap CRISPR Gene Dependency	1.0	3.46831
496100306_FWM_no dementia_no TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	7.08
MEL270	DepMap CRISPR Gene Dependency	1.0	3.07528
SDCCAG8	LINCS L1000 CMAP CRISPR Knockout Consensus Signatures	-1.0	-0.00638394
BRD-K90103010	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.17527
collagen type vi trimer	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.593072
BRD-K16238077	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.03295
pre-b cell receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.432618
TC-71	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.46064
Sarcoma_SARC_TCGA-DX-A8BH-01A-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
POLH	LINCS L1000 CMAP CRISPR Knockout Consensus Signatures	-1.0	-0.00541228
lymph node	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.10227
CCC5	DepMap CRISPR Gene Dependency	1.0	2.44746
PC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.01076
SOX4	MotifMap Predicted Transcription Factor Targets	1.0	null
BRD-K21784579	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.01721
CALU-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.19301
dentin	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.441042
scalp	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
posterior (caudal) superior temporal cortex (area 22c)_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.91428
Collagen and cuticulin-based cuticle extracellular matrix	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.569
BRD-K98109987	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.45476
PMC10115638-41591_2023_2255_MOESM4_ESM.xlsx-HGG_MYCN_deletions-Extended_Data_Table_2_Significant_regions_of_DNA_copy-number_alterations_by_DNA_methylation_class_MYCN	Rummagene Transcription Factor Associations 2026	1.0	null
BRD-K62979806	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.16993
telencephalon	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055348
MDAMB361	CCLE Cell Line Gene CNV Profiles	-1.0	-1.82208
icSARA deltaORF6_30Hour_23365422_GSE33267	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.83817
BRD-K96280720	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.37049
ERF::NHLH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	73.3958
NS-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.788
CTCF_GM19239_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BRD-K03194507	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.696
Kidney renal papillary cell carcinoma_KIRP_TCGA-Q2-A5QZ-01A-11R-A28H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-VP-A872-01A-11R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CRCGN015_MCF10A.TP53.M_24H:A16	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.4057
posteroventral (inferior) parietal cortex_13 pcw_F_12834	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.48986
amygdaloid complex_30 yrs_F_12290	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.89355
BRD-K26758344	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.97726
BRD-K58245454	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.28013
CRCGN012_HEPG2_24H:K01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.41915
TC32	DepMap CRISPR Gene Dependency	1.0	6.95996
GRIA1	LINCS L1000 CMAP CRISPR Knockout Consensus Signatures	-1.0	-0.00531581
BRD-K22244754	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.7301
AdrenalCortex	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	0.832424
Developmental Biology	Reactome Pathways 2024	1.0	null
CTCF_IMR-90_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cytoskeleton	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.071524
SCRT2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.9527
Hfl	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.655
PMC10011543-41419_2023_5707_MOESM4_ESM.xlsx-genes_with_unique_SNP-F5-Thygro-r__CIC-1n_h-r__CIC-2n_h-r_CIC	Rummagene Transcription Factor Associations 2026	1.0	null
18318837-TableS2	GeneSigDB Published Gene Signatures	1.0	null
CRCGN014_HEPG2_24H:D11	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	6.51505
Protonema	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.505
Pancreatic adenocarcinoma_PAAD_TCGA-IB-7889-01A-11R-2156-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Pheochromocytoma and Paraganglioma_PCPG_TCGA-SR-A6MX-05A-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
496100534_FWM_probable Alzheimer's disease_no TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.39948
ELK1_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Lung adenocarcinoma_LUAD_TCGA-49-4505-01A-01R-1206-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
TGIF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.8081
atherosclerosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.318999
BRD-K06489778	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.28581
GSE155162,GSE155169_1_v_2_buparlisib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
BRD-K75657700	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.52818
BRD-K74860368	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.29434
BRD-K56890200	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.29742
intracellular part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.266042
cerebellar cortex_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.6002
MEWO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.6569
coronary artery	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.265038
Malignant Neoplasm	DisGeNET Gene-Disease Associations	1.0	null
SKNMC	DepMap CRISPR Gene Dependency	1.0	4.70912
HS819T	CCLE Cell Line Gene Expression Profiles	1.0	2.53268
b cell deficiency	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.109339
BRD-K05414181	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.18648
MOLT4	BioGPS Cell Line Gene Expression Profiles	1.0	0.831796
thigh muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.101094
OVISE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.968136
BRD-K88448214	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.21427
JIMT-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.57516
CTCF_HGPS cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BRD-K40649636	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.41991
forebrain	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053621
Hodgkin's lymphoma	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.264
CRCGN016_MCF10A.WT.HP_24H:C07	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.94697
Connective tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.142
collagen and cuticulin-based cuticle extracellular matrix part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.21124
ASH-3	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BRD-K98451611	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.12548
posteroventral (inferior) parietal cortex_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.58467
Musculoskeletal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.197
auditory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.064668
SARS-BatSRBD_0Hour_23935999_GSE47961	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-2.55715
vertebrate muscular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053827
urogenital system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05076
L1236	DepMap CRISPR Gene Dependency	1.0	3.01527
Prostate adenocarcinoma_PRAD_TCGA-J9-A52E-01A-11R-A26U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
JHH4	CCLE Cell Line Gene Expression Profiles	1.0	1.60596
Immune system cancer	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.264
CTCF_MCF-7_hg19_7	ENCODE Transcription Factor Binding Site Profiles	1.0	null
496100596_FWM_dementia_TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	7.9355
NB10	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BRD-K75807882	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.15476
Arthritis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.113
TGIF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.8389
BRD-K53774864	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.2483
Babesiosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.012
proteinaceous extracellular matrix	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.119161
Bladder Urothelial Carcinoma_BLCA_TCGA-BL-A5ZZ-01A-31R-A30C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC8046804-41467_2021_22478_MOESM11_ESM.xlsx-Del_AA-TCGA-Unnamed_41_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
BRD-K66039243	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.21205
SNU46	CCLE Cell Line Gene Expression Profiles	-1.0	-1.4789
BRD-K44004565	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.04622
DMS 454	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04094
SNU886	CCLE Cell Line Gene Expression Profiles	1.0	1.91081
LY-294002-424	CMAP Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
CCF-STTG1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BRD-K37564297	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.51503
CRCGN015_MCF10A.TP53.M_24H:B10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	7.5748
small intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.558059
POLR2A_A549_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Integument	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
MDA-MB-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.68788
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-G8-6907-01A-11R-2213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
lymphoid tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.960744
BRD-A87494167	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.09442
Interrenal cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.567
BRD-K23405268	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.13391
neck	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.067437
Antiphospholipid syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.371
A-Vietnam-1203_CIP048_RG4-2004(H5N1)NS1trunc_18Hour_None_GSE43204	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.62907
BRD-K31510639	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.24198
COLO 680N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.35424
BRD-K57902040	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.48646
SOX9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.9605
Bone inflammation disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.123
bone marrow	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.677395
IRF2	JASPAR Predicted Transcription Factor Targets	1.0	null
RFX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	56.8847
dorsolateral prefrontal cortex_19 pcw_F_12885	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.835922
JHESOAD1	CCLE Cell Line Gene CNV Profiles	1.0	1.71431
BRD-K12986423	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.41369
BRD-K70712801	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-5.36322
plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.604502
peritoneum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.922483
BRD-K95895516	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.63037
branchial arch	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.221061
choroid cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.43157
COV362	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.34494
respiratory epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.177564
BRD-K54660148	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.44498
OAW42	DepMap CRISPR Gene Dependency	1.0	2.50611
BRD-K47471281	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.49872
PIAS1_Depletion_GDS5076_12_human_MDA-MB 231 breast cancer cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
RAD21_IMR-90_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_fibroblast of mammary gland_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BRD-K02337960	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.31338
levodopa-4394	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
adipose tissue	GTEx Tissue Gene Expression Profiles	1.0	1.18962
BRD-K97391170	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.21778
BRD-K61432982	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.00615
BRD-K21866464	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.7594
BRD-K77354700	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.87517
Hypodermal seam cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.559
Rectum adenocarcinoma_READ_TCGA-DY-A0XA-01A-11R-A155-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE167224,GSE168147_1_v_5_hnrnpk_human	RummaGEO Gene Perturbation Signatures	-1.0	null
BRD-K70380532	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.19486
caudal ganglionic eminence_8 pcw_M_13058	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.861507
H3K27ac_osteoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Parasitic infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.138
A172	BioGPS Cell Line Gene Expression Profiles	-1.0	-1.65785
japanese	GeneRIF Biological Term Annotations	1.0	null
A-Vietnam-1203_CIP048_RG3-2004(H5N1)mutPB2-627E_0Hour_None_GSE43203	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.07528
CTCF_fibroblast of gingiva_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MERO83	DepMap CRISPR Gene Dependency	1.0	3.12741
Lung squamous cell carcinoma_LUSC_TCGA-37-4141-01A-02R-1100-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Annuli extracellular matrix	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.57
PL45	CCLE Cell Line Gene CNV Profiles	1.0	1.88183
8MGBA	DepMap CRISPR Gene Dependency	1.0	2.59665
BRD-K60460300	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.76927
BRD-K75637705	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.53697
COLO824	DepMap CRISPR Gene Dependency	1.0	3.24278
hsa-miR-3117-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
U2904	DepMap CRISPR Gene Dependency	1.0	3.07507
jugular vein	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.66925
SCC25	CCLE Cell Line Gene CNV Profiles	-1.0	-1.57148
fin	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.414673
KNS62	DepMap CRISPR Gene Dependency	1.0	3.54937
BRD-K29077209	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.78709
19843711-TableS1	GeneSigDB Published Gene Signatures	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-FG-5965-02B-11R-A29R-07,TCGA-FG-5965-02A-11R-A29R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
artery	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.371245
Lung adenocarcinoma_LUAD_TCGA-55-1596-01A-01R-0946-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Asthma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.154
Root cortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.411
BRD-K03254663	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.98638
striatum_8 yrs_M_12841	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.824799
arteriosclerotic cardiovascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.317182
macromolecular complex	GO Cellular Component Annotations 2015	1.0	null
cardiovascular system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.054866
OVKATE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.71295
neuroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059099
BRD-K94803981	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.01403
primary visual cortex (striate cortex, area V1/17)_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.14479
NCI-H650	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.864127
Thrombosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.089
organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.17687
NCIH1299	CCLE Cell Line Gene CNV Profiles	-1.0	-1.4684
viscus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.522011
sensory system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.251015
amygdaloid complex_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.04716
Cysticercus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.766
uveal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.35899
hematopoietic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.903701
bronchial epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.191116
GSE226249_2_v_1_pirfenidone_human	RummaGEO Drug Perturbation Signatures	1.0	null
2.2.15	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.204
GSE145249_0_v_2_ppm1g_human	RummaGEO Gene Perturbation Signatures	1.0	null
CTCF_osteoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me1_Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
Sto	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.59
dorsolateral prefrontal cortex_13 yrs_F_12831	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.01065
BRD-K52104866	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.32838
BRD-K69471644	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.08081
Bone disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.128
Pheochromocytoma and Paraganglioma_PCPG_TCGA-WB-A81A-01A-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ZFP42	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	54.2648
CTCF_brain microvascular endothelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BRD-K35407043	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.19981
BRD-K90485414	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.17293
BRD-K15508005	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.1275
BRD-K69780027	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.33476
Hepatopancreas	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.765
Kidney renal clear cell carcinoma_KIRC_TCGA-CJ-4882-01A-02R-1426-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Sarcoma_SARC_TCGA-DX-A3U8-01A-11R-A29R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SU-DHL-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04312
intracellular organelle part	GO Cellular Component Annotations 2015	1.0	null
extracellular matrix part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.085381
Prostate adenocarcinoma_PRAD_TCGA-HC-7745-01A-11R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K93993174	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.36219
BRD-K54053991	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.02537
Skin	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Mitochondrial outer membrane translocase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.934
bladder	GTEx Tissue Gene Expression Profiles	-1.0	-0.968473
BRD-K96144282	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.11051
Papilloma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.523
organism form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.257237
RAD21	ENCODE Transcription Factor Targets	1.0	null
H3K4me3_osteoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Bursa of Fabricius	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.184
A-Vietnam-1203_CIP048_RG3-2004(H5N1)mutPB2-627E_24Hour_None_GSE43203	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.52777
artery wall	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.217762
Starch grain	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.508
SKRC31	CCLE Cell Line Gene CNV Profiles	-1.0	-2.08891
CTCF_retinal pigment epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BRD-K59870481	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.42182
anchoring collagen complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.458404
HCC1263	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.22516
Kidney renal clear cell carcinoma_KIRC_TCGA-B4-5835-01A-11R-1672-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-A13082766	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.09311
Scalp	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Prostate adenocarcinoma_PRAD_TCGA-KK-A8IH-01A-11R-A36G-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
mediodorsal nucleus of thalamus_13 yrs_F_12831	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.897341
H3K9me3_A549_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
hsa-miR-23a	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
TBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.7035
BRD-K38831170	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.11476
T173	CCLE Cell Line Gene Expression Profiles	1.0	1.57681
H3K9me3_NT2-D1_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
CRCGN016_MCF10A.WT.HP_24H:P24	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.6951
CTCF_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BRD-A15330900	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.89357
hsa-miR-4770	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
H2AFZ_keratinocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
primary auditory cortex (core)_12 pcw_F_12835	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.14029
OVCAR-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.887184
Lung squamous cell carcinoma_LUSC_TCGA-43-5668-01A-01R-1635-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Cellulose synthase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.633
sinusitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.97128
H3K4me1_skeletal muscle myoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
496100410_TCx_possible Alzheimer's disease_TBI_87_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.2318
intracellular organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
KPL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.38443
Scapula	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.148
posterior (caudal) superior temporal cortex (area 22c)_13 yrs_F_12831	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.991061
NCIH211	CCLE Cell Line Gene CNV Profiles	1.0	1.35134
BCL11A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.15
Liver hepatocellular carcinoma_LIHC_TCGA-ZP-A9D2-01A-11R-A38B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K41025232	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.43954
Kidney renal papillary cell carcinoma_KIRP_TCGA-AL-A5DJ-01A-11R-A26U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K19608763	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.00308
BRD-K36882679	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.19184
skmel24	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.1
cleft palate	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.241546
ear	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.069484
HEC-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BRD-K45519638	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.35204
BRD-K72648699	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.10437
hair	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.149176
primary visual cortex (striate cortex, area V1/17)_12 pcw_F_12960	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.891689
BRD-K85722065	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.33546
immune system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.045002
leukocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.935341
CTCF_fibroblast of upper leg skin_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
intracellular	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.259591
FUOV1	CCLE Cell Line Gene CNV Profiles	1.0	1.33515
cell part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.316708
Caulonema	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.782
BRD-K47650707	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.72076
intermediate filament cytoskeleton	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.193394
PIAS1_KD_GSE44024_133_human_breast cancer cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
HCC515	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.929983
POU2F1::SOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.095
Prostate adenocarcinoma_PRAD_TCGA-HC-7737-01A-11R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HS840T	CCLE Cell Line Gene Expression Profiles	1.0	1.45486
BRD-A79316179	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.08665
Egg white	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.612
CTCF_fibroblast of skin of abdomen_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hair	GeneRIF Biological Term Annotations	1.0	null
Plant oil gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.346
NUGC4	CCLE Cell Line Gene CNV Profiles	1.0	1.88543
JEKO-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BRD-K39489370	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.57472
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-GS-A9TV-01A-11R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HCC202	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.929983
H3K9me3_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
BRD-K93726930	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.63064
BRD-K72071403	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.04458
CRCGN016_MCF10A.WT.HP_24H:A19	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.97645
496100425_TCx_no dementia_TBI_95-99_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.73646
TGBC11TKB	COSMIC Cell Line Gene Mutation Profiles	1.0	null
hydrocortisone_homo sapiens_gpl201_gse21909	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
BRD-K34977825	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.34602
hair follicle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.7146
EN	DepMap CRISPR Gene Dependency	1.0	2.62745
BRD-K94277689	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.46873
CRCGN016_MCF10A.TP53.M_24H:P14	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.89636
CFPAC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.83677
BRD-K72675584	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.00255
NIH:OVCAR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.30532
BRD-K63252672	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.69251
BRD-K78438852	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.07293
benzylpenicillin-4501	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
PANC 05.04	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.954527
BRD-K34695725	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.06564
CRCGN015_MCF10A.WT.HP_24H:B10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.39721
uterine cervix	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.073343
BRD-K23203419	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.01671
496100464_FWM_no dementia_no TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.46625
STATH	LINCS L1000 CMAP CRISPR Knockout Consensus Signatures	1.0	0.00549492
non-membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
Immune system disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.264
varicose veins	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.287235
hsa-miR-764	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
SARS-CoV MA15_Day7-PFU-10^3_None_GSE33266	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.65614
MHHES1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.7521
BRD-K80483148	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	5.4116
MedullaOblongata	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	0.989675
TESPA1	LINCS L1000 CMAP CRISPR Knockout Consensus Signatures	-1.0	-0.00614813
Proventriculus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.526
BRD-K47170544	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.95629
BRD-K07486034	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.2533
BRD-K08723967	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.22677
vein	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.413532
ZNF300	LINCS L1000 CMAP CRISPR Knockout Consensus Signatures	-1.0	-0.00461951
Lymphatic system disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.264
EZH2	ENCODE Transcription Factor Targets	1.0	null
fruit	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.162014
BRD-K09995054	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.86268
BRD-K91216645	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.06396
SKES1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.93691
Uterine Carcinosarcoma_UCS_TCGA-N5-A4RT-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lung adenocarcinoma_LUAD_TCGA-05-4382-01A-01R-1206-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Sporophyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.719
SW620	BioGPS Cell Line Gene Expression Profiles	1.0	2.41625
cerebellar cortex_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.70352
BRD-K57468571	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.07111
BRD-K75814223	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.56771
BRD-K20368781	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.13342
PMC10170086-41598_2023_34519_MOESM6_ESM.xlsx-Shee2-The_differentially_expressed_genes_between_the_BARX2_high_and_BARX2_low_group_of_LIHC_patients_BARX2	Rummagene Transcription Factor Associations 2026	1.0	null
lung disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.050106
nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.040644
intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.311145
496100528_FWM_no dementia_no TBI_95-99_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.33659
HCC2935	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.30518
hsa-miR-4477a	TargetScan Predicted Conserved microRNA Targets	1.0	0.348832
NCIH2196	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33052
KDM5A	ENCODE Transcription Factor Targets	1.0	null
POU2F2	JASPAR Predicted Transcription Factor Targets	1.0	null
lung	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.465335
OVKATE	CCLE Cell Line Gene CNV Profiles	-1.0	-1.54715
Middle lamella	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.572
Mesothelioma_MESO_TCGA-MQ-A4LM-01A-11R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCI-H1915	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.75021
BRD-K84935903	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.20461
fulvestrant-367	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
USP2_KO_GDS5079_25_mouse_kidney	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
connective tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042202
BRD-K01281780	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.15042
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
Silique	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.833
primary motor cortex (area M1, area 4)_12 pcw_F_13060	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.832829
SOX10	MotifMap Predicted Transcription Factor Targets	1.0	null
HS821T	CCLE Cell Line Gene Expression Profiles	1.0	1.36535
disease by infectious agent	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042044
19843711-TableS2	GeneSigDB Published Gene Signatures	1.0	null
l45	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.94
BRD-K82217056	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.08537
Callus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.969
alimentary canal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.311507
ventrolateral prefrontal cortex_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.869857
adult	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.286381
NCIH1915	CCLE Cell Line Gene CNV Profiles	-1.0	-1.59139
CR2	LINCS L1000 CMAP CRISPR Knockout Consensus Signatures	1.0	0.00493765
BRD-K07482874	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.02696
CRCGN015_MCF10A.TP53.M_24H:M07	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.8979
NCVADR RES	BioGPS Cell Line Gene Expression Profiles	-1.0	-1.18166
EFM-192C	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.929307
SARS-CoV_72Hour_23935999_GSE47960	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	2.02819
SATB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.314
CTCF_HepG2_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BECKER	CCLE Cell Line Gene CNV Profiles	-1.0	-2.25108
posterior (caudal) superior temporal cortex (area 22c)_21 pcw_M_12886	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.00037
posteroventral (inferior) parietal cortex_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-2.06386
PMC9509360-41419_2022_5262_MOESM6_ESM.xlsx-Fig_2D_MSC_targeted_RNF4-Down_MSC	Rummagene Transcription Factor Associations 2026	1.0	null
PRPF4B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.29125
ZNF8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.6312
Colo-205 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.617
CRCGN015_MCF10A_48H:B21	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.02346
BRD-K12879624	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.45853
EZH2_keratinocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BRD-K26459891	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.31413
TFAP4::ETV1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	100.035
GSE228106_3_v_2_paclitaxel_human	RummaGEO Drug Perturbation Signatures	1.0	null
H3K4me1_Breast vHMEC	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
ZNF93	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	124.879
496100490_HIP_no dementia_no TBI_86_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.20734
HS688AT	CCLE Cell Line Gene Expression Profiles	1.0	2.38068
BRD-K89142472	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.27774
Prostate adenocarcinoma_PRAD_TCGA-J4-A6G3-01A-11R-A311-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BICR16	DepMap CRISPR Gene Dependency	1.0	2.97042
BRD-K72484719	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.38028
BRD-K88642841	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.63207
ZNF75A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.8047
WPE1NA22	DepMap CRISPR Gene Dependency	1.0	3.17798
leg	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.07324
H3K9me3_myotube_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
CTCF_retinal pigment epithelial cell_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BRD-K85664064	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.06229
Brain Lower Grade Glioma_LGG_TCGA-P5-A731-01A-11R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K06029218	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.18792
PSI associated light-harvesting complex I	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.61
protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.196669
BRD-K10580455	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.31204
cytoplasmic chromosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.167611
Autoimmune disease of cardiovascular system	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.109
BRD-K63987422	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.24104
HCC2218	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.6853
Brain Lower Grade Glioma_LGG_TCGA-DB-A4XH-01A-11R-A27Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K27945483	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.60285
germ plasm	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.387751
primary immunodeficiency disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.064422
cortex	GeneRIF Biological Term Annotations	1.0	null
496100570_HIP_no dementia_no TBI_78_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.1565
anterior (rostral) cingulate (medial prefrontal) cortex_12 pcw_F_12835	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.03919
LN235	CCLE Cell Line Gene CNV Profiles	-1.0	-1.81351
BRD-K44086628	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.64686
CAPAN1	CCLE Cell Line Gene CNV Profiles	1.0	1.70329
Disease of cellular proliferation	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.264
BRD-K16879434	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.10618
BRD-K29028138	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.44922
Lymphoma	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.264
BSC cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.61
Pancreatic adenocarcinoma_PAAD_TCGA-HV-A5A3-11A-11R-A26U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K44371786	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.17531
cerebral hemisphere	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056161
BRD-K14216332	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.37313
respiratory system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.160761
BRD-K21075720	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.07257
anterior (rostral) cingulate (medial prefrontal) cortex_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.897341
BRD-K63163033	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.31954
Thyroid cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.517
Plant secretory cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.336
GSE145639_1_v_2_adar_human	RummaGEO Gene Perturbation Signatures	1.0	null
ribosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.12702
Lung adenocarcinoma_LUAD_TCGA-MP-A4T9-01A-11R-A24X-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hematopoietic system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.850425
BRD-K39566424	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.36994
TC71	CCLE Cell Line Gene CNV Profiles	-1.0	-1.42792
JIMT1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.07143
BRD-A99344113	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.27369
keratin filament	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
HTR2B	LINCS L1000 CMAP CRISPR Knockout Consensus Signatures	1.0	0.00549814
organelle part	GO Cellular Component Annotations 2015	1.0	null
ileocecum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.687184
HT-115	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.931738
BRD-K12705251	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.0705
hemolymph	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.242363
PMC9714459-DataSheet3.xlsx-Supplement_3A-1166_common_elements_in_MSC_and_Fibroblasts_MSC	Rummagene Transcription Factor Associations 2026	1.0	null
BRD-K54925224	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.13167
EZH2_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BRD-K66590796	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.01382
HUO9	DepMap CRISPR Gene Dependency	1.0	6.83263
Amyloplast envelope	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.204
BRD-K24494475	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.164
MAX::MYC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.7143
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-4827-01A-02R-1420-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cytoplasmic part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.044255
ELK4	JASPAR Predicted Transcription Factor Targets	1.0	null
BRD-K02471501	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.2266
Hair medulla	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.782
ZNF573	LINCS L1000 CMAP CRISPR Knockout Consensus Signatures	-1.0	-0.00482317
BRD-K27263328	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.17931
ZNF317	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.4527
Sarcoma_SARC_TCGA-SI-A71O-06A-11R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
primary motor cortex (area M1, area 4)_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.62936
intermediate filament	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.193394
Kidney renal papillary cell carcinoma_KIRP_TCGA-BQ-5884-01A-11R-1592-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CRCGN016_MCF10A.TP53.M_24H:P12	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.26597
BRD-K78816149	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.07718
BRD-K50876388	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.3267
mouth	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.225144
ALVA31	BioGPS Cell Line Gene Expression Profiles	1.0	1.43195
saphenous vein	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.181457
keratin filament	GO Cellular Component Annotations 2015	1.0	null
MSC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.3075
HEP G2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.857262
BRD-K11641139	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.20515
anterior (rostral) cingulate (medial prefrontal) cortex_12 pcw_F_13060	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-2.21353
HCC2218	CCLE Cell Line Gene CNV Profiles	-1.0	-1.67419
CRCGN016_MCF10A.WT.HP_24H:D05	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.0604
CALU3	CCLE Cell Line Gene Expression Profiles	1.0	1.64068
b-lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.37727
BRD-K65934178	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.12885
BRD-K48059443	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.61056
Anaplastic thyroid cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.614
Kidney renal papillary cell carcinoma_KIRP_TCGA-J7-8537-01A-11R-2404-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Cardiovascular system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.15
sirolimus-402	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
BRD-K58933168	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.52971
immunoglobulin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.267871
cerebral cortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057323
CD101	LINCS L1000 CMAP CRISPR Knockout Consensus Signatures	-1.0	-0.00590126
M059K	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.87269
HS739T	CCLE Cell Line Gene Expression Profiles	1.0	1.39139
BRD-K99198579	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.15075
NFIC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.8833
H3K4me2_fibroblast of dermis_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
NCI-H920	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.940487
Nodular basal cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.532
BRD-K47535493	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.61494
BRD-K95010912	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.10073
y chromosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.277406
embryo	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057115
Wholebrain	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-1.16505
HCC70	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03686
Gastrointestinal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.111
BRD-K30025024	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.38654
occipital neocortex_9 pcw_M_12833	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.4588
SLC35C1	LINCS L1000 CMAP CRISPR Knockout Consensus Signatures	-1.0	-0.00571739
HCC1171	CCLE Cell Line Gene CNV Profiles	1.0	1.44718
NCIH1563	CCLE Cell Line Gene CNV Profiles	1.0	2.29362
NP8	DepMap CRISPR Gene Dependency	1.0	2.07021
DM3	CCLE Cell Line Gene Expression Profiles	1.0	2.04755
mitochondrial chromosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.168101
hsa-miR-143	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
BRD-K98008739	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.11063
Central nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.079
Kidney renal clear cell carcinoma_KIRC_TCGA-B8-A54E-01A-11R-A266-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K39078753	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.2893
SNB75	CCLE Cell Line Gene CNV Profiles	-1.0	-2.59481
Lung adenocarcinoma_LUAD_TCGA-44-A479-01A-31R-A24H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE227698_5_v_1_g0s2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
CRCGN016_MCF10A.TP53.M_24H:O14	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.12174
Secondary Malignant Neoplasm Of Lymph Node	DisGeNET Gene-Disease Associations	1.0	null
BRD-K12336887	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.25084
BRD-K32145037	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.9455
BRD-K12440228	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.32009
CRCGN017_MCF10A.TP53.M_24H:C01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.5408
Prostate adenocarcinoma_PRAD_TCGA-KC-A7F3-01A-21R-A33R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HS895T	CCLE Cell Line Gene Expression Profiles	1.0	1.96605
SYT1	LINCS L1000 CMAP CRISPR Knockout Consensus Signatures	-1.0	-0.00710057
BRD-A11130173	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.1256
Disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.244
Brain Lower Grade Glioma_LGG_TCGA-DB-A4XB-01A-11R-A26U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K50443235	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.39858
SK-MEL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.46316
Plant collar	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.559
CTV-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BRD-K57026098	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.2235
ocular cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.251718
BRD-K52124788	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.63495
BRD-K87340219	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.37371
BRD-A59449038	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.51992
BRD-K78965436	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.55055
levallorphan-tartrate	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.72193
BRD-K37790543	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.03125
BRD-K71032892	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.12663
Ciliary epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.799
BRD-K10358320	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.87085
BRD-K08730634	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.69936
corpus striatum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.107194
BRD-K17840858	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.31547
ERG_01_17	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	4.51245
dorsolateral prefrontal cortex_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.869857
CTCF_BJ_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BRD-K73261251	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.38786
SNU-638	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04312
BRD-K59841546	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.2402
Organ system cancer	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.264
BRD-K30633507	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.5231
SEMA3B	LINCS L1000 CMAP CRISPR Knockout Consensus Signatures	-1.0	-0.00559263
SKMEL5	BioGPS Cell Line Gene Expression Profiles	-1.0	-0.883852
BRD-K83786559	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.02246
Raf-1_OE_GDS1925_166_human_Estrogen receptor (ER) alpha positive MCF-7 breast cancer cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
Cancer	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.264
limb	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.063754
MAF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.8849
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Amyloplast	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.836
WM2664	CCLE Cell Line Gene Expression Profiles	-1.0	-2.00607
CTCF_foreskin fibroblast_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
integument	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
RMGI	CCLE Cell Line Gene CNV Profiles	1.0	1.55219
cortical layer of collagen and cuticulin-based cuticle extracellular matrix	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.21124
chr17_41039442_G_A_b38	GTEx eQTL 2025	1.0	2.27409
CRCGN016_MCF10A.TP53.M_24H:D05	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.6315
BRD-K44521151	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.40777
BRD-K11251396	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.06717
H3K27me3_GM12878_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me1_Muscle Satellite Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
CRCGN016_MCF10A.TP53.M_24H:F05	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.04816
arteriosclerosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.302698
NCI-H292	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Vascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.116
EDD_DEPLETION_GDS2445_116_human_embryonic fibroblasts	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
PMC10335698-pone.0285806.s007.xlsx-DMKN-shRNA_KD_Vs_ShSrc-Unnamed_9_AR	Rummagene Transcription Factor Associations 2026	1.0	null
middle ear	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.22415
intracellular part	GO Cellular Component Annotations 2015	1.0	null
BRD-K52468958	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.52982
ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057806
MAP3K1_knockout_245_GSE39240	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	1.0	1.56724
POLR2A_H54_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SOX21	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.2208
KNS60	CCLE Cell Line Gene Expression Profiles	-1.0	-2.07839
PANC1005	CCLE Cell Line Gene CNV Profiles	1.0	1.8055
Arrector pili muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.826
Lung adenocarcinoma_LUAD_TCGA-86-8358-01A-11R-2326-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K03848296	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.02196
Bronchial disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.166
SAM complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.153
ofloxacin-3673	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Sclerenchyma	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.511
Fertilization envelope	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.622
Mat-Ly-Lu cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.061
CRCGN009_HEPG2_24H:L13	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	8.08925
ectoderm	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.081694
BRD-K23393260	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.00616
spleen	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.534251
fallopian tube	GTEx Tissue Gene Expression Profiles	-1.0	-2.10021
Prostate adenocarcinoma_PRAD_TCGA-EJ-A46E-01A-31R-A250-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
condensed chromosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.138636
MCC13	DepMap CRISPR Gene Dependency	1.0	2.34081
ZCCHC12	LINCS L1000 CMAP CRISPR Knockout Consensus Signatures	1.0	0.00430472
Prostate adenocarcinoma_PRAD_TCGA-KK-A6DY-01A-12R-A311-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
JHUEM3	CCLE Cell Line Gene Expression Profiles	-1.0	-1.74543
ZKSCAN1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.797
NCI-H1693	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.29608
CTCF_fibroblast of gingiva_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_MCF-7_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K9ac_Muscle Satellite Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
common variable immunodeficiency	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.363716
NCI-N87	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.06938
fh1	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.64
TBX5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.9395
LCLC-97TM1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11689
BRD-K98695520	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.45205
BRD-K21982562	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.1123
HNF1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.2416
cytoskeletal part	GO Cellular Component Annotations 2015	1.0	null
CRCGN016_MCF10A.TP53.M_24H:L22	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.06616
BRD-K10959171	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.52424
BRD-K95591629	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.89527
CBF3 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.959
BRD-K33371292	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.37238
BRD-K73795883	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.26649
PA-TU-8988T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.895291
FOXH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.544
Prostate adenocarcinoma_PRAD_TCGA-QU-A6IM-01A-11R-A31N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HNF1A	Pathway Commons Protein-Protein Interactions	1.0	null
RS11846	BioGPS Cell Line Gene Expression Profiles	1.0	0.84674
plant collar	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.757018
BRD-K86452395	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.18628
BRD-K62182950	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.422
LN18	BioGPS Cell Line Gene Expression Profiles	-1.0	-1.18166
H2AFZ_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BRD-K11905754	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.51303
BRD-K31883758	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.52543
amygdaloid complex_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.34798
CRCGN017_MCF10A.TP53.M_24H:J01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.4525
H3K27me3_CD3 Primary Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
NOP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.43024
basal ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.075081
BRD-K25387295	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.35489
CRCGN014_HEPG2_3H:P03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.10835
protein complex	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
CTCF_skeletal muscle myoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BRD-K39247583	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.63206
BRD-K36314834	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.48399
BRD-K16838444	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.45751
Brain Lower Grade Glioma_LGG_TCGA-DU-6542-01A-11R-1896-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
orbital frontal cortex_9 pcw_M_12833	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.28095
WM793	CCLE Cell Line Gene Expression Profiles	-1.0	-1.60085
DUOX2	LINCS L1000 CMAP CRISPR Knockout Consensus Signatures	1.0	0.00548639
BRD-K93747042	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.6395
dorsolateral prefrontal cortex_12 pcw_F_13060	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.1814
Thyroid cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.489
Viral infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.055
GARP complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.099
dorsolateral prefrontal cortex_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.21749
anterior (rostral) cingulate (medial prefrontal) cortex_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.928743
BRD-K81439435	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.34055
FERD3L	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.5045
CRCGN016_MCF10A.TP53.M_24H:O21	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.17713
Prostate adenocarcinoma_PRAD_TCGA-CH-5769-11A-01R-1580-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
nasal polyp	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.219707
SW1990	DepMap CRISPR Gene Dependency	1.0	2.27752
protein complex	GO Cellular Component Annotations 2015	1.0	null
BRD-K54861624	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.35306
erastin-6412	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
CRCGN009_HEPG2_24H:C21	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.78429
estradiol_mus musculus_gpl4134_gse23072	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
BRD-K60531990	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.231
ELK1	ENCODE Transcription Factor Targets	1.0	null
CTCF_GM12866_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
vein disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.160387
bronchus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.362646
anterior (rostral) cingulate (medial prefrontal) cortex_12 pcw_F_12960	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.15382
BRD-K85336956	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.31702
ISTMES2	CCLE Cell Line Gene Expression Profiles	-1.0	-2.37051
BRD-K71755056	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.83498
CRCGN016_MCF10A.TP53.M_24H:H08	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.8634
SUDHL8	DepMap CRISPR Gene Dependency	1.0	2.95025
BRD-K74779337	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.13249
Omk	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.734
BRD-K42582718	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.93259
trunk	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.71542
BRD-K68605096	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.81785
BRD-K44458042	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.43388
BRD-K51933590	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.43155
BRD-K61407677	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.07514
ZNF417	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.5836
CADOES1	CCLE Cell Line Gene Expression Profiles	-1.0	-2.63334
BRD-K26156776	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.26754
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.29608
bronchial epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.192744
BRD-K73443280	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.34816
BRD-K19965080	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.0993
HT1376	DepMap CRISPR Gene Dependency	1.0	3.0517
BRD-K62203376	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.27662
NCIH522	CCLE Cell Line Gene Expression Profiles	-1.0	-1.81327
BRD-K06997715	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.018
BRD-K98441254	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.42665
paranasal sinus disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.9696
BRD-K96377358	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.45486
animal	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.206
BRD-K39074860	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.63976
HCC38	CCLE Cell Line Gene CNV Profiles	1.0	1.41799
K562	BioGPS Cell Line Gene Expression Profiles	1.0	1.0937
HOXC13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.402
CHP212	CCLE Cell Line Gene CNV Profiles	1.0	1.70885
CTCF_epithelial cell of proximal tubule_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EMC-BAC-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
lung cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.230931
LU165	DepMap CRISPR Gene Dependency	1.0	3.26344
Hypoxia_Astrocyte_GSE4483	GEO Signatures of Differentially Expressed Genes for Diseases	1.0	1.33069
Genital primordium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.797
hsa-miR-651	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
PKNOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.5689
posterior (caudal) superior temporal cortex (area 22c)_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-2.00053
EZH2_skeletal muscle myoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_choroid plexus epithelial cell_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_fibroblast of lung_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BRD-K68574010	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.51487
pectoral fin	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.586427
Sepal	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.725
RKN	COSMIC Cell Line Gene Mutation Profiles	1.0	null
ventrolateral prefrontal cortex_13 pcw_M_12888	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.69326
Pancreatic adenocarcinoma_PAAD_TCGA-H6-8124-01A-11R-2404-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
A673	CCLE Cell Line Gene CNV Profiles	-1.0	-1.67914
CBX3	ENCODE Transcription Factor Targets	1.0	null
Adrenocortical carcinoma_ACC_TCGA-OR-A5K0-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K69269415	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.48316
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.86487
Hsf	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.226
CTCF_foreskin fibroblast_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BRD-K04367224	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.19835
MEF2A	JASPAR Predicted Transcription Factor Targets	1.0	null
BRD-K83836941	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.26269
b cell receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.191456
IM-9 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.539
musculoskeletal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.041166
CTCF-20526341-ESCS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
BRD-K64194889	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.55974
BRD-K31284555	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.49779
BRD-K82667180	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.05702
Whole body	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
PATU8988T	CCLE Cell Line Gene CNV Profiles	1.0	1.33252
Pancreatic adenocarcinoma_PAAD_TCGA-H6-8124-11A-01R-2404-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
muscular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053428
BRD-K43206373	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.15227
BRD-K91576495	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.52085
BRD-K06237859	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.75042
BRD-K92367471	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.88341
Anal fin	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.969
Liver hepatocellular carcinoma_LIHC_TCGA-BC-A10Z-11A-11R-A131-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
middle ear disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.237009
HCC2279	CCLE Cell Line Gene Expression Profiles	-1.0	-1.46317
Dermal papilla	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.787
arsenic trioxide_homo sapiens_gpl201_gse48441	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
BRD-K87383650	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.23872
ETV5::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.2962
496100666_HIP_probable Alzheimer's disease_TBI_83_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.23689
cerebellar cortex_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.993225
3M complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.79
KURAMOCHI	DepMap CRISPR Gene Dependency	1.0	3.24948
BRD-K28093873	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.65191
GSE184087_4_v_3_tert_human	RummaGEO Gene Perturbation Signatures	1.0	null
Cuticle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.117
JAR	COSMIC Cell Line Gene Mutation Profiles	1.0	null
dorsolateral prefrontal cortex_30 yrs_F_12290	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.70896
23132-87	COSMIC Cell Line Gene Mutation Profiles	1.0	null
husk	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.594451
respiratory epithelium cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.710909
KMS18	CCLE Cell Line Gene Expression Profiles	-1.0	-1.77809
SYK_KD_GDS3609_440_human_MCF10A	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
H3K9me3_fibroblast of dermis_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
primary motor-sensory cortex (samples)_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.42867
PMC4815041-NIHMS715090-supplement-Supplementary_Table_10.xlsx-CCF_DP_clustering-Hugo_Symbol_PITX1	Rummagene Transcription Factor Associations 2026	1.0	null
BRD-K93484038	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.18629
viral infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.052907
HUP-T3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24128
BRD-A57762296	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.05131
BRD-K99048639	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.13532
condensed nuclear chromosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.214714
BRD-K13241788	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.44486
Amyloplast membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.325
mediodorsal nucleus of thalamus_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.95402
BRD-K82852523	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.11674
whole plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.600479
BA/F3 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.511
Brain Lower Grade Glioma_LGG_TCGA-TQ-A7RV-02A-11R-A36H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hsa-miR-3689a-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
CBX3_HCT116_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BRD-K83553001	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.20653
ETV5::FOXO1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.5893
CRCGN015_MCF10A.TP53.M_24H:P19	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.2998
BRD-K09337184	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.40598
16207381-Table1Sb	GeneSigDB Published Gene Signatures	1.0	null
H3K9me3_U2OS_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
BRD-K44994529	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.00669
CRCGN016_MCF10A.TP53.M_24H:E20	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.49399
BRD-K49981566	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.82956
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A29G-06A-12R-A18T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC9996951-40659_2023_417_MOESM3_ESM.xlsx-Osteo_vs_MSC_Array2_hypo_er_txt-1_UCSC_NAME_MSC	Rummagene Transcription Factor Associations 2026	1.0	null
Disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.264
NB69	COSMIC Cell Line Gene Mutation Profiles	1.0	null
CTCF_fibroblast of lung_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CRCGN014_HEPG2_24H:G02	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.05378
CTCF_fibroblast of mammary gland_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BRD-K92479346	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.47621
GCM1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.4479
BRD-K95935249	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.0742
adductor	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.387404
JHOM2B	CCLE Cell Line Gene CNV Profiles	-1.0	-1.51162
Lung adenocarcinoma_LUAD_TCGA-50-7109-01A-11R-2039-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K58774452	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.4153
Bulbil	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.801
Fruit capsule	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.828
CRCGN015_MCF10A.WT.HP_24H:J10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.03801
primary motor cortex (area M1, area 4)_8 yrs_M_12841	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	3.09561
CRCGN011_HEPG2_24H:A08	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.01305
BRD-K46970272	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.46879
scale	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.531484
Uterine Carcinosarcoma_UCS_TCGA-NF-A4X2-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CTCF_A549_hg19_7	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CRCGN015_MCF10A.WT.HP_24H:P22	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.02318
bone disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.043221
BRD-K50315405	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.10883
NCIH522	CCLE Cell Line Gene CNV Profiles	1.0	1.52004
BRD-K25905181	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.07631
BRD-K72083510	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.35009
CTCF_MCF-7_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
lower respiratory tract disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.048814
EFM-192A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14147
PMC5322933-pone.0172430.s013.xls-Immune_MSC_Single_Basal_vs_MSC-Unnamed_1_MSC	Rummagene Transcription Factor Associations 2026	1.0	null
Disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.619
CRCGN016_MCF10A.WT.HP_24H:M01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.6657
Disease of anatomical entity	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.264
BRD-K90697690	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.08579
BRD-K86978618	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.30879
KS1	CCLE Cell Line Gene Expression Profiles	1.0	2.13763
Lung adenocarcinoma_LUAD_TCGA-J2-A4AD-01A-11R-A24H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Pheochromocytoma and Paraganglioma_PCPG_TCGA-S7-A7WW-01A-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K16789950	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.26241
BRD-K26214026	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.20734
collagen and cuticulin-based cuticle extracellular matrix	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.21124
CAKI2	DepMap CRISPR Gene Dependency	1.0	2.86463
cell	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.316708
H3K4me1_Penis Foreskin Keratinocyte Primary Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
TC205	DepMap CRISPR Gene Dependency	1.0	4.6869
Tassel	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.573
BRD-K37634338	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.22348
seed	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.087637
Kidney renal clear cell carcinoma_KIRC_TCGA-CJ-5679-01A-11R-1541-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K79379353	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.18689
NCI-H1838	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BRD-K73286847	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.18387
extracellular region part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.066837
peripheral nervous system neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.1007
primary motor-sensory cortex (samples)_9 pcw_M_12833	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.892357
nerve	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059582
CRCGN017_MCF10A.TP53.M_24H:E07	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.03109
BRD-K69543414	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.45548
496100422_TCx_dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.52534
Vegetative stage	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.512
Plasmodesma	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.793
CTCF_kidney epithelial cell_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
YH13	CCLE Cell Line Gene Expression Profiles	1.0	1.67634
H3K4me2_skeletal muscle myoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
MDA-MB-157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14057
Ventriculus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.149
primary somatosensory cortex (area S1, areas 3,1,2)_15 yrs_M_12299	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.70259
T-47D	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.15799
Bradyzoite	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.658
BFTC909	CCLE Cell Line Gene Expression Profiles	-1.0	-1.85643
COLO678	CCLE Cell Line Gene CNV Profiles	1.0	1.74562
HEK293	BioGPS Cell Line Gene Expression Profiles	1.0	0.951587
BRD-K04409515	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.29408
CRCGN015_MCF10A.TP53.M_24H:O12	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.5173
hsa-miR-4735-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
beta-N-acetylhexosaminidase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.934
BRD-K27335290	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.61983
BRD-K56536241	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.49478
SW1417	CCLE Cell Line Gene Expression Profiles	1.0	1.47365
POLR2A	ENCODE Transcription Factor Targets	1.0	null
HS742T	CCLE Cell Line Gene Expression Profiles	1.0	1.71258
Keratin-associated protein	InterPro Predicted Protein Domain Annotations	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-DU-7304-02A-12R-A36H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CTCF_GM10248_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
18637760-SuppTable1	GeneSigDB Published Gene Signatures	1.0	null
BRD-K42732309	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.5617
CTCF_astrocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Adrenocortical carcinoma_ACC_TCGA-OR-A5JX-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
root	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.082501
BRD-K19045069	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.0464
pericarp	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.374618
disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.549359
cellular_component	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
BRD-K72386335	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.39701
MDA-MB-453	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.83926
icSARS CoV_60Hour_23365422_GSE33267	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	0.893611
HS822T	CCLE Cell Line Gene Expression Profiles	1.0	3.40788
bronchial epithelial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.77027
Prostate adenocarcinoma_PRAD_TCGA-HC-8260-11A-01R-2263-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-CS-6188-01A-11R-1896-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HL60	BioGPS Cell Line Gene Expression Profiles	-1.0	-1.33622
HOP92	CCLE Cell Line Gene CNV Profiles	-1.0	-3.20415
BRD-K68202226	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.09754
Mesothelioma_MESO_TCGA-SC-A6LN-01A-11R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
posterior (caudal) superior temporal cortex (area 22c)_4 mos_M_12296	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.939681
Microspore	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.525
BRD-K58168959	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.3005
Parasitic protozoa infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.118
H2AC11	LINCS L1000 CMAP CRISPR Knockout Consensus Signatures	-1.0	-0.00576646
PMC10915192-ab-23-0304-Supplementary-Table-S6.pdf-13-SOX6_SOX6	Rummagene Transcription Factor Associations 2026	1.0	null
igm immunoglobulin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.275202
disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.25207
CTCF_GM13976_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K9me3_Adult Liver	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
BRD-K02747732	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.36009
auditory vesicle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.399114
BRD-K61029307	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.17124
NCI-H1792	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25323
sense organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057643
AU565	CCLE Cell Line Gene CNV Profiles	1.0	2.05425
KMH-2	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GSE145639_7_v_4_adar_human	RummaGEO Gene Perturbation Signatures	1.0	null
BRD-K49995660	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.92818
DETROIT 562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.971063
NCIH1573	DepMap CRISPR Gene Dependency	1.0	10.7065
CTCF_fibroblast of pedal digit skin_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
intracellular organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.240276
intracellular organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.18093
Hematopoietic system disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.264
BRD-K02987495	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.28337
Prostate adenocarcinoma_PRAD_TCGA-HC-7211-11A-01R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cytoskeleton	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
Brain Lower Grade Glioma_LGG_TCGA-HT-8564-01A-11R-2404-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ciclosporin-261	CMAP Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
H3K27me3_mononuclear cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-CH-5767-11B-01R-1789-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K26844643	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.94487
Barrett Esophagus_Esophageal Tissue_GSE1420	GEO Signatures of Differentially Expressed Genes for Diseases	1.0	1.29034
BRD-A64985224	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.23546
cytoskeletal part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.986728
RARA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	59.9916
ZR-75-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.57393
AMO1	DepMap CRISPR Gene Dependency	1.0	2.11215
PMC9232687-13238_2021_887_MOESM3_ESM.xlsx-37_KD_sgCDC20_vs_sgNTC-Differentially_expressed_genes_DEGs_upon_CDC20_knockdown_under_37_culture_AR	Rummagene Transcription Factor Associations 2026	1.0	null
SW620	CCLE Cell Line Gene Expression Profiles	1.0	1.5047
BRD-K87140555	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.16252
brain	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051531
H3K4me1_osteoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
SOX15	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.3615
HN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.895291
Meningococcal infection_Umbilical vein_GSE4646	GEO Signatures of Differentially Expressed Genes for Diseases	-1.0	-2.47629
BRD-K63779242	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.13256
HS281T	CCLE Cell Line Gene Expression Profiles	1.0	1.52052
H3K9me3_fibroblast of lung_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
HCC1428	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.34494
hsa-miR-4709-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
primary auditory cortex (core)_3 yrs_F_12836	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.886758
Keratinization	Reactome Pathways 2024	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-HC-7079-01A-11R-1965-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSS	CCLE Cell Line Gene Expression Profiles	1.0	1.35944
BRD-K38282015	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.56082
BT-549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.22516
nervous system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.259124
BRD-K48389907	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.31046
SNU1197	CCLE Cell Line Gene Expression Profiles	1.0	1.55229
clemizole-3672	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
hsa-miR-3934	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
Orbit	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.337
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-5707-01A-11R-1541-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-J9-A52C-01A-11R-A26U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Gametophyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.883
posterior (caudal) superior temporal cortex (area 22c)_12 pcw_F_12960	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.27281
BRD-K62329160	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.01434
CRCGN016_MCF10A.TP53.M_24H:O15	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.39071
BRD-K61383885	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.30349
MYC-19829295-ESCS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
BRD-K57724551	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.13499
Skin Cutaneous Melanoma_SKCM_TCGA-FS-A1ZR-06A-21R-A18U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
POLR2A_ECC-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ventrolateral prefrontal cortex_16 pcw_M_12879	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.835922
ribonucleoprotein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.05584
COLO 678	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.6497
hsa-miR-384	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
SW1271	CCLE Cell Line Gene Expression Profiles	-1.0	-1.75407
Prostate adenocarcinoma_PRAD_TCGA-HC-7737-11A-02R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
A549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.15933
thioridazine-422	CMAP Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
BRD-K62852603	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.0356
BRD-K99755021	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.25899
BRD-K15924535	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.1275
BRD-K88086273	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.13865
BRD-K44624253	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.95249
BRD-K64483847	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.30398
BHLHE22	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.3884
496100318_PCx_probable Alzheimer's disease_TBI_100+_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	7.45761
Meristem	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.042
BRD-K53094498	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.45232
agammaglobulinemia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.215314
BRD-K44932450	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.20706
BRD-K77273085	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.0429
BRD-K04408214	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.33807
hand, foot and mouth disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.765535
CTCF_skin fibroblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CTCF_fibroblast of lung_hg19_6	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Long QT syndrome 8	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.174
Liver hepatocellular carcinoma_LIHC_TCGA-2Y-A9H2-01A-12R-A38B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K22701871	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.32893
CPC-N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2044
GSE145249_1_v_3_ppm1g_human	RummaGEO Gene Perturbation Signatures	1.0	null
ileum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.769027
KYAE1	DepMap CRISPR Gene Dependency	1.0	2.20554
BRD-K32106123	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.24558
BRD-K98272474	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.07754
primary visual cortex (striate cortex, area V1/17)_13 pcw_F_12834	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.11051
orofacial cleft	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.185612
Hair follicle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.447
CRCGN017_MCF10A.WT.HP_24H:J01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.29342
gastrointestinal tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.328262
non-membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.351002
Brain - Hippocampus	GTEx Tissue Gene Expression Profiles 2023	1.0	2.91253
intracellular non-membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
Pancreatic adenocarcinoma_PAAD_TCGA-HZ-8636-01A-21R-2404-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-B8-4621-01A-01R-1503-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
TTC709	DepMap CRISPR Gene Dependency	1.0	3.76229
Rectum adenocarcinoma_READ_TCGA-EI-6513-01A-21R-1736-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K73126584	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.44405
endosperm	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.269867
N18TG2 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.043
Gametophore	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.59
BRD-K02778838	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.92668
Perturb_5922_KD_KHDRBS1_SRP271175	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	1.53657
CRCGN015_MCF10A.TP53.M_24H:K11	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.2417
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Basal node	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.071
JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.4749
SCRT1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.4086
posteroventral (inferior) parietal cortex_12 pcw_F_12960	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.24278
H3K27ac_fibroblast of dermis_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051008
icSARA deltaORF6_60Hour_23365422_GSE33267	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.52852
pod	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.769027
Respiratory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.177
SkeletalMuscle	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	1.09296
BRD-K82335556	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.12867
BRD-K61868194	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.34342
intracellular organelle part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
KE39	DepMap CRISPR Gene Dependency	1.0	2.77573
BRD-K42486632	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.29442
CRCGN017_MCF10A.WT.HP_24H:N17	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.7817
integument	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.583621
BRD-K21771537	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.17843
PMC5798892-41421_2017_3_MOESM8_ESM.xlsx-up-regulated-Supplementary_Table_S3_Up-_and_downregulated_genes_in_ATF6-_-_hMSCs_compared_to_ATF6_hMSCs_late_passage_ATF6	Rummagene Transcription Factor Associations 2026	1.0	null
H3K27ac_myotube_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
alitretinoin_homo sapiens_gpl6480_gse43090	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
CRCGN016_MCF10A.TP53.M_24H:L11	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.24699
BRD-K91511557	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.63757
ZNF354C	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.5625
ACT-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.656
USP2_KO_GSE43517_20_mouse_kidney	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
BRD-K65888165	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.40012
BRD-K21423945	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.82235
plasma membrane part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.045983
Epicotyl	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.576
TE159T	CCLE Cell Line Gene Expression Profiles	-1.0	-1.6301
BRD-K97763545	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.51915
HCC1143	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.46064
Disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.753
TMK-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BRD-K61909412	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.63201