association dataset threshold value standardized value 8505C COSMIC Cell Line Gene Mutation Profiles 1.0 null ZFP42 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 32.9287 NCOR1-26117541-K562-HUMAN ChEA Transcription Factor Targets 2022 1.0 null FOXO1::ELK3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 30.6673 CHD1 ENCODE Transcription Factor Targets 1.0 null NCI-H2291 COSMIC Cell Line Gene Mutation Profiles 1.0 null Prostate adenocarcinoma_PRAD_TCGA-HC-7738-11A-01R-2118-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Brain Lower Grade Glioma_LGG_TCGA-S9-A7R3-01A-11R-A34R-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null MZ in caudal perirhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.49735 CTCF_H1-hESC_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null LS-411N COSMIC Cell Line Gene Mutation Profiles 1.0 null CCNT2_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_fibroblast of dermis_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null EBF1 ENCODE Transcription Factor Targets 1.0 null POLR2A_K562_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null medial mammillary nucleus, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.7482 Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-G8-6326-01A-11R-2213-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null paracentral lobule, anterior part, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.71458 TBP ENCODE Transcription Factor Targets 1.0 null MHH-PREB-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.61791 YY1 ENCODE Transcription Factor Targets 1.0 null PATU8902 CCLE Cell Line Gene CNV Profiles -1.0 -2.02566 Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-JW-A5VH-01A-11R-A28H-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Rectum adenocarcinoma_READ_TCGA-EI-6883-01A-31R-1928-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null STAT5A_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null anterior orbital gyrus, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.935577 DAUDI COSMIC Cell Line Gene Mutation Profiles 1.0 null MS751 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.72172 SCRT1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 27.032 anterior orbital gyrus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.49025 SET2 CCLE Cell Line Gene CNV Profiles 1.0 2.59998 ATN-1 COSMIC Cell Line Gene Mutation Profiles 1.0 null HNF4G ENCODE Transcription Factor Targets 1.0 null reticulotegmental nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.833738 rostral subdivision of paraventricular nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.15093 Lung adenocarcinoma_LUAD_TCGA-44-7667-01A-31R-2066-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null HDAC2 ENCODE Transcription Factor Targets 1.0 null eGFP-JUNB_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null OSC-19 COSMIC Cell Line Gene Mutation Profiles 1.0 null IZ in medial temporal-occipital cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.986118 JUN ENCODE Transcription Factor Targets 1.0 null Brain Lower Grade Glioma_LGG_TCGA-HT-A61B-01A-11R-A29R-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null H3K4me1_Neurosphere Cultured Cells Ganglionic Eminence Derived Roadmap Epigenomics Histone Modification Site Profiles 1.0 null CTCF_LNCaP clone FGC_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null IV, left, lateral hemisphere Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.06641 Kidney renal clear cell carcinoma_KIRC_TCGA-B0-4828-01A-01R-1277-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null ZC3H11A ENCODE Transcription Factor Targets 1.0 null JIYOYEP-2003 COSMIC Cell Line Gene Mutation Profiles 1.0 null skin GTEx Tissue Gene Expression Profiles 1.0 2.18987 496100371_TCx_no dementia_TBI_78_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 8.00251 PANC1005 CCLE Cell Line Gene CNV Profiles -1.0 -1.33959 Kidney renal clear cell carcinoma_KIRC_TCGA-BP-5201-01A-01R-1426-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null TUBA1B CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.92201 cingulum bundle, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.858393 SOX2-21211035-LN229-HUMAN ChEA Transcription Factor Targets 2022 1.0 null NFIX JASPAR Predicted Human Transcription Factor Targets 2025 1.0 44.3483 dorsal motor nucleus of the vagus (vagal nucleus) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.43944 CTCF_LNCaP clone FGC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Cysteine synthase complex COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 1.032 REH COSMIC Cell Line Gene Mutation Profiles 1.0 null ATF3_HepG2_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null H3K4me1_Brain Hippocampus Middle Roadmap Epigenomics Histone Modification Site Profiles 1.0 null H3K36me3_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null YH-13 COSMIC Cell Line Gene Mutation Profiles 1.0 null RFX5_HepG2_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null laterodorsal subdivision of area 8 Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.31549 NRL JASPAR Predicted Human Transcription Factor Targets 2025 1.0 58.291 NR2F1 JASPAR Predicted Transcription Factor Targets 1.0 null GAK COSMIC Cell Line Gene Mutation Profiles 1.0 null eGFP-GATA2_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null IZ in dorsolateral prefrontal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.67721 ZC3H11A_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null central nuclear group Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.2423 NCI-H2106 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.55644 PK1 CCLE Cell Line Gene CNV Profiles -1.0 -1.50017 H2AFZ_endothelial cell of umbilical vein_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null EZH2_HepG2_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null JHH-5 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.00699 NEUROG2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 49.6075 NCOR1_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null OCI-LY-3 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.967508 FOXA2 ENCODE Transcription Factor Targets 1.0 null lateral hypothalamic area, anterior region, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 2.00129 USF1_HepG2_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_GM13977_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Mesothelioma_MESO_TCGA-SC-A6LP-01A-11R-A34F-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null PMC7895828-41419_2021_3488_MOESM3_ESM.xlsx-Sheet1-Supplementary_Table_3_List_of_deregulated_genes_in_c-MYC_altered_human_HCC_from_TCGA_LIHC_dataset_MYC Rummagene Transcription Factor Associations 2026 1.0 null HCC2218 Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles -1.0 -1.07801 cingulate gyrus, retrosplenial part, right, superior bank of gyrus Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.3144 H3K4me1_K562_hg19_2 ENCODE Histone Modification Site Profiles 1.0 null NEUROD1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 53.0776 IL18 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.21692 Acute Myeloid Leukemia_LAML_TCGA-AB-2871-03A-01T-0735-13 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null ARID3A_HepG2_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null RCOR1_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null outer CP in caudal perirhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.66971 PSN1 COSMIC Cell Line Gene Mutation Profiles 1.0 null Lung adenocarcinoma_LUAD_TCGA-64-5778-01A-01R-1628-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null SCC-9 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.2914 PATZ1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 185.279 NCIH69 CCLE Cell Line Gene CNV Profiles 1.0 1.70351 Liver hepatocellular carcinoma_LIHC_TCGA-UB-AA0U-01A-11R-A38B-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Pancreatic adenocarcinoma_PAAD_TCGA-IB-AAUP-01A-11R-A37L-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Liver hepatocellular carcinoma_LIHC_TCGA-G3-A3CJ-01A-11R-A213-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null ZNF418 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 41.9291 PMC5358377-pnas.1615015114.sd02.xlsx-Sheet1-Genes_with_VDR_elements_only_control_VDR Rummagene Transcription Factor Associations 2026 1.0 null basomedial nucleus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.39884 MAFF_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-MY-A5BD-01A-11R-A26T-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null H3K27me3_CD14-positive monocyte_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-486-3p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.13535 PA-TU-8988T Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.06265 PMC12356745-12015_2025_10896_MOESM2_ESM.pdf-417-PRDM15_PRDM15 Rummagene Transcription Factor Associations 2026 1.0 null TOLEDO Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.871068 paraventricular nucleus of the hypothalamus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 2.01431 SG in inferolateral temporal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 2.35872 FOXO1::ELK1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 60.9281 layer IIIb of caudal entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.917624 PL45 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.57235 H3K4me1_Breast Myoepithelial Cells Roadmap Epigenomics Histone Modification Site Profiles 1.0 null Lung adenocarcinoma_LUAD_TCGA-78-7166-01A-12R-2066-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Ovarian germ cell cancer DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.645 Bladder Urothelial Carcinoma_BLCA_TCGA-UY-A78K-01A-11R-A33J-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null ETV2::FIGLA JASPAR Predicted Human Transcription Factor Targets 2025 1.0 45.7462 Brain Lower Grade Glioma_LGG_TCGA-HW-8321-01A-11R-2404-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null chr21_44596298_T_C_b38 GTEx eQTL 2025 1.0 4.14092 NCI-H1048 COSMIC Cell Line Gene Mutation Profiles 1.0 null EZH2_HeLa-S3_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null ELF1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 81.8424 JUND_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Kidney renal papillary cell carcinoma_KIRP_TCGA-IA-A83V-01A-11R-A355-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null multiform (lateral) division of MD Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.96668 H2AFZ_keratinocyte_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CUX1 ENCODE Transcription Factor Targets 1.0 null CA46 COSMIC Cell Line Gene Mutation Profiles 1.0 null ETV5::FIGLA JASPAR Predicted Human Transcription Factor Targets 2025 1.0 91.0226 Heschl's gyrus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.829408 GID complex COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 1.043 H3K36me3_H1 BMP4 Derived Trophoblast Cultured Cells Roadmap Epigenomics Histone Modification Site Profiles 1.0 null V, left, lateral hemisphere Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.955887 Keratin-associated protein InterPro Predicted Protein Domain Annotations 1.0 null mpkCCD cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.194 ZNF93 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 105.927 SG in rostral perirhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.01769 TCF12 ENCODE Transcription Factor Targets 1.0 null LCLC-103H COSMIC Cell Line Gene Mutation Profiles 1.0 null EP300 ENCODE Transcription Factor Targets 1.0 null ZKSCAN1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 25.0767 VZ in superolateral temporal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.01784 FOSL2 ENCODE Transcription Factor Targets 1.0 null GATA1_erythroblast_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Hair TISSUES Curated Tissue Protein Expression Evidence Scores 2025 1.0 4.0 FOXO1::ELF1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 29.8712 CTCF_HEK293_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null Lung squamous cell carcinoma_LUSC_TCGA-21-5782-01A-01R-1635-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null ZNF416 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 22.6319 nucleus of the diagonal band, left, vertical division Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.08342 GATA2_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null cuneus, left, peristriate Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.14857 Lung adenocarcinoma_LUAD_TCGA-53-A4EZ-01A-12R-A24X-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Pancreatic adenocarcinoma_PAAD_TCGA-HZ-8519-01A-11R-2404-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null occipital pole, left, inferior aspect Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.80584 Whole body TISSUES Curated Tissue Protein Expression Evidence Scores 2025 1.0 4.0 whole body TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null H2AFZ_GM12878_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null HNF4G_HepG2_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null JUN_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null SW 1417 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.06265 MAX_H1-hESC_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null DOV13 CCLE Cell Line Gene CNV Profiles 1.0 1.42881 RFX5 ENCODE Transcription Factor Targets 1.0 null TP53-22573176-HFKS-HUMAN ChEA Transcription Factor Binding Site Profiles 1.0 null COV504 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.42937 RMUGS CCLE Cell Line Gene CNV Profiles -1.0 -1.52848 cytoskeletal part GO Cellular Component Annotations 2015 1.0 null NBSUSSR COSMIC Cell Line Gene Mutation Profiles 1.0 null Liver hepatocellular carcinoma_LIHC_TCGA-BC-A10X-11A-11R-A131-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null LS1034 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.2134 HCC1143 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 2.21894 EZH2_astrocyte_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null SK-MM-2 COSMIC Cell Line Gene Mutation Profiles 1.0 null RBBP5 ENCODE Transcription Factor Targets 1.0 null BV-173 COSMIC Cell Line Gene Mutation Profiles 1.0 null E2F6 ENCODE Transcription Factor Targets 1.0 null Hair root TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.685 SP1_HepG2_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4761-01A-01R-1289-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null outer CP in dorsomedial parietal cortex (area 7m) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.951791 ZNF384_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null TGIF2LX JASPAR Predicted Human Transcription Factor Targets 2025 1.0 59.7555 tuberomammillary nucleus, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.95758 BRCA1_HeLa-S3_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null TCF12_ECC-1_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null H3K9ac_H1-hESC_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null PKNOX2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 65.6432 SETDB1_U2OS_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Rectum adenocarcinoma_READ_TCGA-CL-5918-01A-11R-1660-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null CAR-1 COSMIC Cell Line Gene Mutation Profiles 1.0 null ZNF175 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 37.2764 EZH2_myotube_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null cell part GO Cellular Component Annotations 2015 1.0 null PMC10011543-41419_2023_5707_MOESM4_ESM.xlsx-genes_with_unique_SNP-F5-Pneo-r__CIC-1n_h-r_CIC Rummagene Transcription Factor Associations 2026 1.0 null intermediate filament COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.03318 PECAPJ34CLONEC12 CCLE Cell Line Gene CNV Profiles -1.0 -2.08434 Kidney renal papillary cell carcinoma_KIRP_TCGA-B9-4116-01A-02R-1351-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null CMK CCLE Cell Line Gene CNV Profiles 1.0 1.7499 MDAMB361 Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles 1.0 1.01183 Prostate adenocarcinoma_PRAD_TCGA-G9-6362-11A-01R-1789-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null TASK1 COSMIC Cell Line Gene Mutation Profiles 1.0 null BACH1_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE180185_9_v_5_setbp1_human RummaGEO Gene Perturbation Signatures -1.0 null CA2 field, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.03098 CEBPB_H1-hESC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null H3K27me3_Breast Myoepithelial Cells Roadmap Epigenomics Histone Modification Site Profiles 1.0 null YAPC Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.887772 Acute Myeloid Leukemia_LAML_TCGA-AB-3005-03A-01T-0736-13 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Rectum adenocarcinoma_READ_TCGA-G5-6233-01A-11R-1736-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null temporal pole, right, medial aspect Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.17231 Lung adenocarcinoma_LUAD_TCGA-69-A59K-01A-11R-A262-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Rectum adenocarcinoma_READ_TCGA-G5-6572-01A-11R-1830-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Lung adenocarcinoma_LUAD_TCGA-55-8507-01A-11R-2403-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null MKN1 COSMIC Cell Line Gene Mutation Profiles 1.0 null CL14 CCLE Cell Line Gene CNV Profiles -1.0 -1.37423 H3K4me1_HepG2_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null TEAD4_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null keratin filament GO Cellular Component Annotations 2015 1.0 null HCFC1_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null HCC1143 Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles 1.0 0.678524 MAX_NB4_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-4747-5p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.20993 SCC-25 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.87005 ERF::NHLH1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 157.253 Lung adenocarcinoma_LUAD_TCGA-86-8054-01A-11R-2241-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null SG in midlateral temporal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.11424 posterior hypothalamic nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.22276 KDM1A ENCODE Transcription Factor Targets 1.0 null VCAP CCLE Cell Line Gene CNV Profiles 1.0 1.56389 lateral orbital frontal cortex (area 12/47) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.64139 anterior group of nuclei, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.869986 MXI1_HepG2_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-4731-5p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.40969 SP in caudal perirhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.59076 KDM1A_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null H3K9me3_K562_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null Lung adenocarcinoma_LUAD_TCGA-80-5608-01A-31R-1949-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null GRIN3B CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.8276 HS 746T Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.825484 H3K4me1_iPS DF 19.11 Roadmap Epigenomics Histone Modification Site Profiles 1.0 null SCABER CCLE Cell Line Gene CNV Profiles -1.0 -1.34388 SCRT2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 46.7753 CTCF_myotube_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null PMC7880998-41467_2021_21255_MOESM8_ESM.xlsx-Sup_Data_5_TWIST_Panel-Gene_Name_TWIST1 Rummagene Transcription Factor Associations 2026 1.0 null MYC_K562_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null Brain Lower Grade Glioma_LGG_TCGA-E1-5311-01A-01R-1470-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null NCI-H1092 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.21789 hsa-miR-1913 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.0155 intermediate filament cytoskeleton COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.03318 CBX3 ENCODE Transcription Factor Targets 1.0 null NCI-H2461 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.33997 REST_SK-N-SH_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null pedunculo(pontine) tegmental nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.879692 EZH2_fibroblast of lung_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null HCC2688 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.56764 MDAMB157 Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles 1.0 1.71551 PML_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null MAX_HepG2_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null Liver hepatocellular carcinoma_LIHC_TCGA-NI-A4U2-01A-11R-A28V-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Intraciliary transport particle A COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.762 PHF8_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null MAFF ENCODE Transcription Factor Targets 1.0 null KHNYN CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.66276 kidney GTEx Tissue Gene Expression Profiles -1.0 -1.38034 eGFP-JUND_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null SIX5 ENCODE Transcription Factor Targets 1.0 null CHD7 ENCODE Transcription Factor Targets 1.0 null Liver hepatocellular carcinoma_LIHC_TCGA-LG-A9QC-01A-11R-A37K-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null 3M complex COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 1.601 HDAC1 ENCODE Transcription Factor Targets 1.0 null reuniens nucleus (medioventral nucleus) of thalamus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.09966 TALL1 CCLE Cell Line Gene CNV Profiles -1.0 -2.04406 hsa-miR-335-5p MiRTarBase microRNA Targets 1.0 null SW 948 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.00048 TP53-32428506-HUMAN-LIVER-HEPTOMA ChEA Transcription Factor Targets 2022 1.0 null Skin Cutaneous Melanoma_SKCM_TCGA-EE-A29G-06A-12R-A18T-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null G59 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.72293 FOSL2_HepG2_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null TAL1 ENCODE Transcription Factor Targets 1.0 null COV504 CCLE Cell Line Gene CNV Profiles -1.0 -1.39388 JUND_HepG2_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null UBTF ENCODE Transcription Factor Targets 1.0 null medioventral part of putamen Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.54151 ventromedial hypothalamic nucleus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.413 CTCF_keratinocyte_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null BT-474 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.27967 ERF::FOXO1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 28.0182 TRIM28 ENCODE Transcription Factor Targets 1.0 null keratin filament COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.03318 midline nuclear complex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.9625 basolateral nucleus (basal nucleus) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.849177 POLR2A_K562_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null Kidney renal clear cell carcinoma_KIRC_TCGA-AS-3777-01A-01R-0864-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null tail of caudate nucleus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.25392 outer SZ in ventrolateral prefrontal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.842754 SCC25 CCLE Cell Line Gene CNV Profiles -1.0 -1.54016 HEL9217 CCLE Cell Line Gene CNV Profiles 1.0 2.23748 intracellular organelle COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.03318 ZNF143 ENCODE Transcription Factor Targets 1.0 null intracellular part GO Cellular Component Annotations 2015 1.0 null NR2F2_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Kidney renal papillary cell carcinoma_KIRP_TCGA-F9-A7VF-01A-11R-A33Z-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null TE-12 COSMIC Cell Line Gene Mutation Profiles 1.0 null GALT CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.62708 H3K4me1_mammary epithelial cell_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null ZNF281 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 143.123 basolateral nucleus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.94216 NFIC::TLX1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 74.375 ZNF526 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.69173 CUX1_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null NB13 COSMIC Cell Line Gene Mutation Profiles 1.0 null NCI-H1975 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.847282 Lung adenocarcinoma_LUAD_TCGA-91-6830-01A-11R-1949-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null TK Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.08987 NCI-SNU-1 COSMIC Cell Line Gene Mutation Profiles 1.0 null EP300_HepG2_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null HNF4A ENCODE Transcription Factor Targets 1.0 null OCI-M2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 2.45132 LMTK3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.63914 laterorostral part of entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.62729 CTCF_HeLa-S3_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null Brain Lower Grade Glioma_LGG_TCGA-HT-7881-01A-11R-2403-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null BICR78 COSMIC Cell Line Gene Mutation Profiles 1.0 null NCI-H1651 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.00048 GABPA_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_GM12873_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null epidermis TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null frontal pole, right, inferior aspect Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -2.19054 rostral division of OFCi (area 11) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.00018 MG-63 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.966468 A-2780 cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.153 TBL1XR1_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null NCI-H187 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.08987 Kidney renal papillary cell carcinoma_KIRP_TCGA-DW-5560-01A-01R-1592-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Kidney renal clear cell carcinoma_KIRC_TCGA-BP-5183-01A-01R-1426-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null TEAD4_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Kidney renal papillary cell carcinoma_KIRP_TCGA-A4-8311-01A-11R-2404-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null ZKSCAN5 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 32.4094 496100390_PCx_probable Alzheimer's disease_no TBI_88_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 9.55485 ZNF530 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 74.0336 interpeduncular nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -2.01497 COLO 201 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.06166 HNF4A_HepG2_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null RT-112 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.51636 frontal pole, right, superior aspect Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.934792 oculomotor nuclear complex, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.02066 NCI-H1437 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.847282 Liver hepatocellular carcinoma_LIHC_TCGA-QA-A7B7-01A-11R-A32O-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null GATA1_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null H2AFZ_osteoblast_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null ZR75B Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles -1.0 -1.49122 Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-PN-A8MA-01A-11R-A36F-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Sarcoma_SARC_TCGA-X6-A7WB-01A-11R-A355-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null CEBPB_K562_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null NFKB1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 34.0607 MM.1S Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.86548 H3K27ac_myotube_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null STAT5A ENCODE Transcription Factor Targets 1.0 null H4K20me1_HeLa-S3_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null Uterine Carcinosarcoma_UCS_TCGA-N8-A4PN-01A-11R-A28V-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null H3K4me2_HepG2_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null intracellular non-membrane-bounded organelle COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.03318 POLR2AphosphoS5_HepG2_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null SSR3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.99906 KAT2B ENCODE Transcription Factor Targets 1.0 null HCC1171 CCLE Cell Line Gene CNV Profiles 1.0 1.49742 MZ in ventromedial extrastriate cortex (VP) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.25508 GATA2_K562_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null POLR2A_HepG2_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null Lung adenocarcinoma_LUAD_TCGA-78-7150-01A-21R-2039-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Skin TISSUES Curated Tissue Protein Expression Evidence Scores 2025 1.0 4.0 H3K9ac_Breast Myoepithelial Cells Roadmap Epigenomics Histone Modification Site Profiles 1.0 null Developmental Biology Reactome Pathways 2024 1.0 null CEBPB ENCODE Transcription Factor Targets 1.0 null MDAMB231 Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles 1.0 0.604328 Prostate adenocarcinoma_PRAD_TCGA-KK-A8IF-01A-11R-A36G-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null ZNF680 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 22.5 NTERA-2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.68448 Kidney renal clear cell carcinoma_KIRC_TCGA-CJ-4882-01A-02R-1426-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null FOXA1_HepG2_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null HT-29 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.28125 GATA1 ENCODE Transcription Factor Targets 1.0 null fastigial nucleus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 2.06277 layer III of caudal entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.951158 gracile nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.919005 outer CP in midinferior temporal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.44058 ZR751 CCLE Cell Line Gene CNV Profiles -1.0 -1.52764 A549 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.847282 NEC8 COSMIC Cell Line Gene Mutation Profiles 1.0 null intracellular COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.03318 DBTRG05MG CCLE Cell Line Gene CNV Profiles 1.0 1.63015 hair root TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null ARID3A ENCODE Transcription Factor Targets 1.0 null EP300_osteoblast_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null NCI-H2810 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.35925 H3K4me1_myotube_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null NCIN87 CCLE Cell Line Gene CNV Profiles -1.0 -2.02566 cortico-medial group, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.54039 GATA2 ENCODE Transcription Factor Targets 1.0 null MONOMAC1 CCLE Cell Line Gene CNV Profiles -1.0 -1.96436 H3K27me3_kidney epithelial cell_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null NCO2 CCLE Cell Line Gene CNV Profiles 1.0 1.84263 MAX_HepG2_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null CEBPD_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null MAFK_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null HUH-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.847282 AN3-CA COSMIC Cell Line Gene Mutation Profiles 1.0 null E2F6_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null Lung adenocarcinoma_LUAD_TCGA-05-4430-01A-02R-1206-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null X, left, lateral hemisphere Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.927492 PA-TU-8902 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.55518 ZNF317 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 82.2812 Liver hepatocellular carcinoma_LIHC_TCGA-DD-A116-01A-11R-A131-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null 3-M syndrome DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.147 HCC1806 Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles 1.0 1.10473 KINGS-1 COSMIC Cell Line Gene Mutation Profiles 1.0 null layer V of area 35c Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.920763 DAOY COSMIC Cell Line Gene Mutation Profiles 1.0 null ABC-1 COSMIC Cell Line Gene Mutation Profiles 1.0 null Rectum adenocarcinoma_READ_TCGA-DY-A1DD-01A-21R-A155-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null MAX ENCODE Transcription Factor Targets 1.0 null gigantocellular reticular nuclei Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.99492 BHLHE40_HepG2_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null HUP-T3 COSMIC Cell Line Gene Mutation Profiles 1.0 null JHH-7 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.14711 RXRA ENCODE Transcription Factor Targets 1.0 null TAL1_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null SK-MES-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.38225 Uterine Carcinosarcoma_UCS_TCGA-N5-A4RA-01A-11R-A28V-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null KU-19-19 COSMIC Cell Line Gene Mutation Profiles 1.0 null H3K4me2_myotube_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null H3K4me3_K562_hg19_2 ENCODE Histone Modification Site Profiles 1.0 null MOLM-16 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.8043 TRIM28_K562_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null central nucleus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.64462 MAZ_HepG2_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null OCUM-1 COSMIC Cell Line Gene Mutation Profiles 1.0 null H3K27me3_fibroblast of lung_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null SCH COSMIC Cell Line Gene Mutation Profiles 1.0 null ZMIZ1_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null 496100404_PCx_possible Alzheimer's disease_TBI_87_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 5.64116 HCC1569 COSMIC Cell Line Gene Mutation Profiles 1.0 null MYBL2_HepG2_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null H3K9ac_Fetal Lung Roadmap Epigenomics Histone Modification Site Profiles 1.0 null ZFP57 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 50.7773 HCC1143 CCLE Cell Line Gene CNV Profiles 1.0 2.30293 intracellular part COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.03318 medial group of nuclei, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.999767 VZ in caudal subicular cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.913271 EP300_HepG2_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null FLI1::FOXI1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 27.5208 central nucleus of inferior colliculus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.2 H3K4me2_osteoblast_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null MYBL2_HepG2_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null HCC202 CCLE Cell Line Gene CNV Profiles 1.0 1.46618 H3K9ac_HepG2_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null MAX_ECC-1_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null H2AFZ ENCODE Transcription Factor Targets 1.0 null paraterminal gyrus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.87954 K-562 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.03067 HDAC1_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null JUND ENCODE Transcription Factor Targets 1.0 null CHD1_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null UCSD-242L Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.2134 medial habenular nucleus, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.72775 mammillary body, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.995345 GCIY COSMIC Cell Line Gene Mutation Profiles 1.0 null adipose tissue GTEx Tissue Gene Expression Profiles 1.0 1.19816 EBC-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.906736 Liver hepatocellular carcinoma_LIHC_TCGA-DD-A3A8-11A-11R-A22L-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null JUN_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null TRAPP complex COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.865 TDP2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.66024 MAX_K562_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null periaqueductal gray substance, ventral portion Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.33654 Pancreatic adenocarcinoma_PAAD_TCGA-3A-A9IR-01A-11R-A38C-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null interstitial nucleus of Cajal, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.71792 CCF-STTG1 COSMIC Cell Line Gene Mutation Profiles 1.0 null HNF4A_HepG2_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null JURKAT COSMIC Cell Line Gene Mutation Profiles 1.0 null MCC13 COSMIC Cell Line Gene Mutation Profiles 1.0 null OVCA 432 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.848207 RXF393 COSMIC Cell Line Gene Mutation Profiles 1.0 null H3K4me1_H1-hESC_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null KDM5A_H1-hESC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null SP1 ENCODE Transcription Factor Targets 1.0 null Pancreatic adenocarcinoma_PAAD_TCGA-H6-A45N-11A-12R-A26U-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null RBBP5_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null lateral septal nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.31755 EBF1_GM12878_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null Rectum adenocarcinoma_READ_TCGA-G5-6235-01A-11R-1736-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null SNAI1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 39.2453 HNF4G_HepG2_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null HCC2279 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.869941 MOLP-2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.967508 dorsal subdivision of VLC Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.87252 Brain Lower Grade Glioma_LGG_TCGA-HT-8012-01A-11R-2403-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null ARID3A_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Liver hepatocellular carcinoma_LIHC_TCGA-G3-A7M5-01A-11R-A33R-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null OVCA420 COSMIC Cell Line Gene Mutation Profiles 1.0 null EPAS1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 30.1281 NR1H4::RXRA JASPAR Predicted Human Transcription Factor Targets 2025 1.0 21.2081 H3K27ac_H1-hESC_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null OVCAR-4 COSMIC Cell Line Gene Mutation Profiles 1.0 null NCIH2291 CCLE Cell Line Gene CNV Profiles 1.0 3.2803 Lung squamous cell carcinoma_LUSC_TCGA-66-2754-01A-01R-0980-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Brain Lower Grade Glioma_LGG_TCGA-HT-8109-01A-11R-2404-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null SUPHD1 CCLE Cell Line Gene CNV Profiles -1.0 -2.54206 MXI1 ENCODE Transcription Factor Targets 1.0 null MYCN JASPAR Predicted Human Transcription Factor Targets 2025 1.0 35.1677 Ebolavirus(ZEBOV)_7day_PBMCs_rNAPc2treated_21987740_GSE24943 GEO Signatures of Differentially Expressed Genes for Viral Infections 1.0 0.236182 NCI-H889 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.46584 H3K4ac_H9 Roadmap Epigenomics Histone Modification Site Profiles 1.0 null RERFLCSQ1 CCLE Cell Line Gene CNV Profiles -1.0 -1.60053 EP300_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null intermediate filament GO Cellular Component Annotations 2015 1.0 null Sarcoma_SARC_TCGA-HS-A5N7-01A-21R-A26T-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null macromolecular complex COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.03318 NCI-H1355 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.13434 NCI-H1666 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.28125 organelle COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.03318 PMC8242083-41467_2021_24064_MOESM4_ESM.txt--HSF1_HSF1 Rummagene Transcription Factor Associations 2026 1.0 null COV413A Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.79077 POLR2AphosphoS5_H1-hESC_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null ETV2::FOXI1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 40.186 ZBTB7A ENCODE Transcription Factor Targets 1.0 null HCC4017 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.847282 skin TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null red nucleus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.00629 dorsomedial hypothalamic nucleus, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.43647 CTCF JASPAR Predicted Human Transcription Factor Targets 2025 1.0 243.953 H3K4me3_WERI-Rb-1_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null Keratin filament COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.749 parabigeminal nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.33325 NCI-H2595 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.887772 ZNF341 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.70018 head and face region of M1 Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.2009 TGIF2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 64.7372 posterior orbital gyrus, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.839919 CTCF_WERI-Rb-1_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null E2F6_H1-hESC_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null ZFP14 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 121.991 MYC_NB4_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCFL JASPAR Predicted Human Transcription Factor Targets 2025 1.0 56.6223 Perturb_8746_OE_KRTAP106_SRP131095 PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 20.0 EP300_HepG2_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null MDA-MB-468 COSMIC Cell Line Gene Mutation Profiles 1.0 null Lung squamous cell carcinoma_LUSC_TCGA-39-5030-01A-01R-1443-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null H3K4me3_HepG2_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null RBBP5_H1-hESC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null MAFK ENCODE Transcription Factor Targets 1.0 null KCL-22 COSMIC Cell Line Gene Mutation Profiles 1.0 null PBX3_GM12878_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null HCC4011 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.848207 NPHP complex COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.88 outer plexiform zone in extrastriate cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.839554 EP300_K562_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null FOXA1_HepG2_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null RXRA_HepG2_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null caudal portion of VFC (area 44) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 3.28325 H3K27me3_Rectal Mucosa Roadmap Epigenomics Histone Modification Site Profiles 1.0 null CHD4 ENCODE Transcription Factor Targets 1.0 null cuneiform nucleus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.14943 Pancreatic adenocarcinoma_PAAD_TCGA-XN-A8T5-01A-12R-A36G-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null layer VI of area 35c Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.33655 ZBTB7A_HepG2_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null REST_Panc1_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null posterior hypothalamic area, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.22046 PML_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null nucleus of the diagonal band, left, horizontal division Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.20963 SAP30_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null PMC12356745-12015_2025_10896_MOESM2_ESM.pdf-866-ENSG00000141956_PRDM15 Rummagene Transcription Factor Associations 2026 1.0 null reticular nucleus of thalamus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.30481 CMK115 CCLE Cell Line Gene CNV Profiles 1.0 1.99974 Lung adenocarcinoma_LUAD_TCGA-50-5931-01A-11R-1755-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null CEBPD_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null H3K4me1_skeletal muscle myoblast_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null KYSE-510 COSMIC Cell Line Gene Mutation Profiles 1.0 null H3K4me3_myotube_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null MPLKIP CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.94046 PRDM9 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 163.385 mammillary body, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.92799 HMGCR CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.34028 MM1S CCLE Cell Line Gene CNV Profiles 1.0 1.45433 hsa-miR-3202 TargetScan Predicted Conserved microRNA Targets 1.0 0.31417 Brain Lower Grade Glioma_LGG_TCGA-FG-8186-01A-11R-2256-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null TUHR10TKB CCLE Cell Line Gene CNV Profiles 1.0 1.57852 ECC10 COSMIC Cell Line Gene Mutation Profiles 1.0 null H3K4me1_GM12878_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null HCC1569 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.03067 FOXA1 ENCODE Transcription Factor Targets 1.0 null CTCF_keratinocyte_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null BHY COSMIC Cell Line Gene Mutation Profiles 1.0 null LOX-IMVI Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.966468 H2AFZ_fibroblast of dermis_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null BACH1 ENCODE Transcription Factor Targets 1.0 null stratum pyramidale of caudal CA2 Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.15728 IZ in midlateral temporal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.2148 IGR1 CCLE Cell Line Gene CNV Profiles -1.0 -1.47597 H3K4me1_Neurosphere Cultured Cells Cortex Derived Roadmap Epigenomics Histone Modification Site Profiles 1.0 null outer CP in midcingulate cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.832963 ATF1_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null WARS2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.03859 CTCF_HepG2_hg19_5 ENCODE Transcription Factor Binding Site Profiles 1.0 null HDAC2_HepG2_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null FIGLA JASPAR Predicted Human Transcription Factor Targets 2025 1.0 15.8403 496100636_FWM_probable Alzheimer's disease_no TBI_86_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 4.91958 TT CCLE Cell Line Gene CNV Profiles -1.0 -1.69894 CTCF_keratinocyte_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null PBX3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 37.7292 BT20 Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles 1.0 0.956421 MAZ_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null PML ENCODE Transcription Factor Targets 1.0 null H3K4me1_NT2-D1_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null Mammary duct TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.598 Lung adenocarcinoma_LUAD_TCGA-44-A479-01A-31R-A24H-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null muscle GTEx Tissue Gene Expression Profiles -1.0 -0.897397 KP-N-RT-BM-1 COSMIC Cell Line Gene Mutation Profiles 1.0 null RT112 CCLE Cell Line Gene CNV Profiles 1.0 1.62516 FOXA1_HepG2_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null LNCAP-CLONE-FGC COSMIC Cell Line Gene Mutation Profiles 1.0 null Kidney Chromophobe_KICH_TCGA-KM-8441-01A-11R-2315-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null animal TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null MMAC-SF COSMIC Cell Line Gene Mutation Profiles 1.0 null CAL-72 COSMIC Cell Line Gene Mutation Profiles 1.0 null H3K4me1_Penis Foreskin Keratinocyte Primary Cells Roadmap Epigenomics Histone Modification Site Profiles 1.0 null hsa-miR-3189-5p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.55165 FOXA2_HepG2_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null COLO 205 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.42937 ZNF263 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 43.3057 peripheral portion of GPi Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.926538 INSM1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 63.9583 lingual gyrus, right, striate Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.87824 NHLH1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 50.454 H2AFZ_mammary epithelial cell_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null RCOR1_HepG2_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null TBL1XR1_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null cell part COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.03318 DMS 454 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.27738 MTF1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 27.8472 H2AFZ_skeletal muscle myoblast_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null globose nucleus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.63998 496100530_FWM_dementia_TBI_90-94_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 4.82221 MC116 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.42298 REL JASPAR Predicted Transcription Factor Targets 1.0 null MYC_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null ATF3 ENCODE Transcription Factor Targets 1.0 null Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-EA-A410-01A-11R-A32Y-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Integument TISSUES Curated Tissue Protein Expression Evidence Scores 2025 1.0 4.0 choroid plexus of the lateral ventricle Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -2.44412 PKNOX1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 34.7184 HOS COSMIC Cell Line Gene Mutation Profiles 1.0 null H3K27me3_skeletal muscle myoblast_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null TBL1XR1 ENCODE Transcription Factor Targets 1.0 null Liver hepatocellular carcinoma_LIHC_TCGA-ZS-A9CE-01A-11R-A37K-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null dentate nucleus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.36029 H3K4me1_Skeletal Muscle Roadmap Epigenomics Histone Modification Site Profiles 1.0 null cellular_component LOCATE Predicted Protein Localization Annotations 1.0 null 496100508_PCx_possible Alzheimer's disease_no TBI_90-94_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 5.35652 H3K27me3_BJ_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null Lung adenocarcinoma_LUAD_TCGA-MN-A4N5-01A-11R-A24X-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null layer IIIu of area 35r Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.59218 H3K27me3_fibroblast of dermis_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-HM-A6W2-06A-22R-A33Z-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null ZNF143_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CEBPB_HepG2_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null SET-2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 3.19167 ETV5::FOXI1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 36.6822 dentate gyrus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.950029 ERF::FOXI1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 24.0906 inner SZ in midlateral extrastriate cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.924869 CTCF_mammary epithelial cell_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null SNU-484 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.878136 H3K4me2_keratinocyte_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null protein complex COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.03318 trochlear nucleus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.883274 SNU1076 CCLE Cell Line Gene CNV Profiles -1.0 -2.10699 RFX4 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 33.3539 H3K27me3_kidney epithelial cell_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null Bladder Urothelial Carcinoma_BLCA_TCGA-E7-A6ME-01A-22R-A32O-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null HCC1493 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.02036 Endometrial stromal sarcoma DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.422 lateral habenular nucleus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -2.39537 HCC78 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.825484 SIHA Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.34482 SG in caudal entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.64771 OUMS-23 COSMIC Cell Line Gene Mutation Profiles 1.0 null TESK1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.97193 SG in frontal polar cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.27669 H3K9ac_K562_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null Liver hepatocellular carcinoma_LIHC_TCGA-NI-A8LF-01A-11R-A36F-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null HNF4A_HepG2_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null Brain Lower Grade Glioma_LGG_TCGA-TM-A7CF-02A-11R-A32Q-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null H3K27ac_HepG2_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null NCI-H446 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.888899 NCI-H1688 COSMIC Cell Line Gene Mutation Profiles 1.0 null EP300_GM12878_hg19_5 ENCODE Transcription Factor Binding Site Profiles 1.0 null TGIF2LY JASPAR Predicted Human Transcription Factor Targets 2025 1.0 57.6526 ZNF157 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 64.459 GSTP1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.87093 subcuneiform nucleus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.867379 ZMIZ1 ENCODE Transcription Factor Targets 1.0 null subgenual (subcallosal) division of MFC (area 25) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.18143 RMG-I COSMIC Cell Line Gene Mutation Profiles 1.0 null MAX_H1-hESC_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null Acute Myeloid Leukemia_LAML_TCGA-AB-2885-03A-01T-0735-13 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Lung adenocarcinoma_LUAD_TCGA-86-8358-01A-11R-2326-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null POLR2AphosphoS5_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null layer IIIa of caudal entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.36281 MYCN-27167114-CHIP-SEQ-NEUROBLASTOMA-HUMAN ChEA Transcription Factor Targets 2022 1.0 null CTCF ENCODE Transcription Factor Targets 1.0 null Adrenocortical carcinoma_ACC_TCGA-P6-A5OG-01A-22R-A29S-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null BLOC complex COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.854 EZH2 ENCODE Transcription Factor Targets 1.0 null hair TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-EX-A69L-01A-11R-A32P-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null TP53 ChEA Transcription Factor Targets 1.0 null UBTF_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null intracellular organelle part GO Cellular Component Annotations 2015 1.0 null H3K4me2_H1-hESC_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null MYC ENCODE Transcription Factor Targets 1.0 null ZNF692 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 49.2298 KLF1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 77.5758 GNB4 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.71648 SETDB1 ENCODE Transcription Factor Targets 1.0 null anterior hypothalamic nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.983585 Pheochromocytoma and Paraganglioma_PCPG_TCGA-W2-A7H5-01B-11R-A35L-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null PANC-03-27 COSMIC Cell Line Gene Mutation Profiles 1.0 null integument TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null RXRA_HepG2_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null inner SZ in midlateral temporal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 2.05623 Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-6938-11A-01R-1915-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null MXI1_H1-hESC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null ETV2::HOXB13 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 22.649 EZH2_skeletal muscle myoblast_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Malignant ovarian germ cell neoplasm DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.945 Brain Lower Grade Glioma_LGG_TCGA-DU-6404-02A-21R-A36H-07,TCGA-DU-6404-02B-11R-A36H-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null SNU-1040 COSMIC Cell Line Gene Mutation Profiles 1.0 null cytoskeletal part COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.03318 H2AFZ_myotube_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null IX, left, lateral hemisphere Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.40166 HCFC1 ENCODE Transcription Factor Targets 1.0 null Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-EK-A2H1-01A-11R-A180-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null TBP_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null KYSE-450 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.955387 NCIH2106 CCLE Cell Line Gene CNV Profiles 1.0 1.8085 CCNT2 ENCODE Transcription Factor Targets 1.0 null H3K9ac_myotube_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null KMS-11 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.888899 salivary gland GTEx Tissue Gene Expression Profiles -1.0 -1.38034 inner CP in subgenual (subcallosal) cingulate cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.36634 201T COSMIC Cell Line Gene Mutation Profiles 1.0 null KP4 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.16243 MYC JASPAR Predicted Human Transcription Factor Targets 2025 1.0 17.6882 BHLHE40 ENCODE Transcription Factor Targets 1.0 null PANC0213 CCLE Cell Line Gene CNV Profiles -1.0 -1.59706 ISHIKAWA(HERAKLIO)02ER- COSMIC Cell Line Gene Mutation Profiles 1.0 null outer CP in primary visual cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.19964 Prostate adenocarcinoma_PRAD_TCGA-KK-A59X-01A-11R-A29R-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null KM-H2 COSMIC Cell Line Gene Mutation Profiles 1.0 null Keratinization Reactome Pathways 2024 1.0 null substantia nigra, pars reticulata, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.29412 Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-FF-A7CQ-01A-11R-A38C-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null anterior hypothalamic area, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 2.79469 TEAD4 ENCODE Transcription Factor Targets 1.0 null KAT2B_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CAMA1 Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles 1.0 0.618559 NCI-H841 COSMIC Cell Line Gene Mutation Profiles 1.0 null GB-1 COSMIC Cell Line Gene Mutation Profiles 1.0 null Pheochromocytoma and Paraganglioma_PCPG_TCGA-WB-A819-01A-11R-A35L-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Prostate adenocarcinoma_PRAD_TCGA-KK-A59Y-01A-11R-A26U-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null TWSG1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.50776 IZ in posterior parahippocampal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.859159 TK-10 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.11774 PRKACB CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.76862 MYBL2 ENCODE Transcription Factor Targets 1.0 null central gray of the pons, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.1569 H2AFZ_H1-hESC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null PMC8567280-EMBR-22-e53014-s008.xlsx-PC3_TIP5_bound_promoter-Unnamed_4_BAZ2A Rummagene Transcription Factor Associations 2026 1.0 null Hair root TISSUES Curated Tissue Protein Expression Evidence Scores 2025 1.0 4.0 PL45 CCLE Cell Line Gene CNV Profiles -1.0 -1.39302 Kidney renal clear cell carcinoma_KIRC_TCGA-AK-3427-01A-01R-0864-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null H3K27ac_iPS DF 19.11 Roadmap Epigenomics Histone Modification Site Profiles 1.0 null H3K4me3_K562_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null REST ENCODE Transcription Factor Targets 1.0 null OCIMY5 CCLE Cell Line Gene CNV Profiles 1.0 2.11036 EMC-BAC-1 COSMIC Cell Line Gene Mutation Profiles 1.0 null Esophagus - Gastroesophageal Junction GTEx Tissue Gene Expression Profiles 2023 1.0 7.21239 Kidney Chromophobe_KICH_TCGA-KO-8404-01A-11R-2315-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null hsa-miR-324-3p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.0155 outer CP in caudal cingulate cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.01691 POLR2AphosphoS5_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null SRP9 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.19564 USF1 ENCODE Transcription Factor Targets 1.0 null Collecting duct cell line TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.852 H3K9ac_CD14-positive monocyte_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null KYSE-140 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.00048 HCC202 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.27738 FOXO3_01_267 KnockTF Gene Expression Profiles with Transcription Factor Perturbations 1.0 2.16011 COR-L23 COSMIC Cell Line Gene Mutation Profiles 1.0 null Lung squamous cell carcinoma_LUSC_TCGA-56-7222-11A-01R-2045-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null EZH2_endothelial cell of umbilical vein_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null non-membrane-bounded organelle COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.03318 Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-EK-A2RN-01A-12R-A213-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null SLR26 CCLE Cell Line Gene CNV Profiles -1.0 -1.32291 NCI-H727 COSMIC Cell Line Gene Mutation Profiles 1.0 null inferior colliculus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.21358 CEBPB_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null protein complex GO Cellular Component Annotations 2015 1.0 null medial vestibular nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.8453 cellular_component COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.03318 MYC_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CHD4_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null ACHN COSMIC Cell Line Gene Mutation Profiles 1.0 null Acute Myeloid Leukemia_LAML_TCGA-AB-2924-03A-01T-0740-13 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null lateral tuberal nuclei Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.82717 NCI-H1838 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.848207 POLR2A ENCODE Transcription Factor Targets 1.0 null Brain Lower Grade Glioma_LGG_TCGA-HT-7467-01A-11R-2027-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null CFPAC-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.887772 Liver hepatocellular carcinoma_LIHC_TCGA-RC-A7SB-01A-21R-A352-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Lung adenocarcinoma_LUAD_TCGA-44-6145-11A-01R-1858-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Sperm plasma membrane COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.948 layer V of caudal entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.23295 CHD7_H1-hESC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null TFAP4::ETV1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 59.8212 NCIH522 CCLE Cell Line Gene CNV Profiles 1.0 1.52468 HS 936.T Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.03067 angular gyrus, left, inferior bank of gyrus Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.833897 CA4 field, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.04644 H2AFZ_HepG2_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null PSN1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.878136 COLO 206F Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.71204 FAM91A1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.63405 BHLHE40_HepG2_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null TGIF1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 68.8764 SIX5_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null NR2F2 ENCODE Transcription Factor Targets 1.0 null POLR2A_HepG2_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null RCOR1_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null MAZ ENCODE Transcription Factor Targets 1.0 null NCI-H2052 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.38346 extracellular region LOCATE Predicted Protein Localization Annotations 1.0 null NR1D1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 32.5193 Prostate adenocarcinoma_PRAD_TCGA-J9-A52E-01A-11R-A26U-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null MDAMB175VII Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles -1.0 -1.27378 ZNF384 ENCODE Transcription Factor Targets 1.0 null GABPA ENCODE Transcription Factor Targets 1.0 null NFIB JASPAR Predicted Human Transcription Factor Targets 2025 1.0 99.8983 MCF10F Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles -1.0 -1.32066 tissues, cell types and enzyme sources TISSUES Curated Tissue Protein Expression Evidence Scores 2025 1.0 4.0 MEL-HO COSMIC Cell Line Gene Mutation Profiles 1.0 null cuneus, right, peristriate Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.39331 supramammillary nucleus, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.52124 Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-VS-A94W-01A-12R-A37O-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null MHHCALL2 CCLE Cell Line Gene CNV Profiles 1.0 1.66411 cell COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.03318 WDR75 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.22282 H3K4me2_fibroblast of dermis_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null COLO 680N Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -2.66528 THAP10 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.66462 HAND2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 44.9504 CTCF_SK-N-SH_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null Lung adenocarcinoma_LUAD_TCGA-NJ-A55R-01A-11R-A262-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null organelle part GO Cellular Component Annotations 2015 1.0 null LU-134-A COSMIC Cell Line Gene Mutation Profiles 1.0 null MAX_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null NURR1 MotifMap Predicted Transcription Factor Targets 1.0 null ART5 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.40507 CX-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.28125 cellular_component GO Cellular Component Annotations 2015 1.0 null OCI-M1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.900267 Ciliary base COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 1.23 COV362 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.64668 anteromedial nucleus of thalamus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.22966 CTCF_MCF-7_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null HCC2885 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.55518 NCI-N417 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.939481 tissues, cell types and enzyme sources TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null Pancreatic adenocarcinoma_PAAD_TCGA-FB-A4P6-01A-12R-A26U-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null GSE146687_2_v_5_eribulin_human RummaGEO Drug Perturbation Signatures 1.0 null 496100356_TCx_probable Alzheimer's disease_TBI_84_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 6.14649 Brain Lower Grade Glioma_LGG_TCGA-HT-8011-01A-11R-2403-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null H2AK5ac_H9 Roadmap Epigenomics Histone Modification Site Profiles 1.0 null TRIM28_U2OS_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null TCF3_GM12878_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null ZR-75-30 COSMIC Cell Line Gene Mutation Profiles 1.0 null RCOR1 ENCODE Transcription Factor Targets 1.0 null GSE120612_7_v_0_etoposide_human RummaGEO Drug Perturbation Signatures 1.0 null IKZF1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 42.2079 Liver hepatocellular carcinoma_LIHC_TCGA-2Y-A9GV-01A-11R-A38B-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null retromer, cargo-selective complex COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 1.063 Pheochromocytoma and Paraganglioma_PCPG_TCGA-QR-A70R-01A-11R-A35K-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null NR2F2_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_lung_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null TCF3 ENCODE Transcription Factor Targets 1.0 null DTX4 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.20979 NCI-H146 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.00048 Edinger-Westphal nucleus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.04002 CP in midlateral temporal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.926238 CEBPD ENCODE Transcription Factor Targets 1.0 null PMC12179407-MCO2-6-e70261-s004.xlsx-up_TET3-KO_PQ_vs_Cas9_PQ-Unnamed_10_TET3 Rummagene Transcription Factor Associations 2026 1.0 null vestibular nuclei, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.861098 TP53-22573176-HFKS-HUMAN ChEA Transcription Factor Targets 2022 1.0 null MCF12A Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles -1.0 -0.966982 SW948 COSMIC Cell Line Gene Mutation Profiles 1.0 null ETV1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 37.7885 SK-N-SH COSMIC Cell Line Gene Mutation Profiles 1.0 null PC-14 COSMIC Cell Line Gene Mutation Profiles 1.0 null SCC-15 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.06265 NCI-H1838 COSMIC Cell Line Gene Mutation Profiles 1.0 null EN COSMIC Cell Line Gene Mutation Profiles 1.0 null TRIM28_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null HDAC2_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-GS-A9TV-01A-11R-A38C-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Gonocyte TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.652 AM-38 COSMIC Cell Line Gene Mutation Profiles 1.0 null GPI CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.96769 inner SZ in posterior parahippocampal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.55313 SNU-C1 COSMIC Cell Line Gene Mutation Profiles 1.0 null Endometrial stromal tumor DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.398 central portion of GPi Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.07053 Intraciliary transport particle B COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.81 medial subdivision of central nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -2.22902 REST JASPAR Predicted Human Transcription Factor Targets 2025 1.0 61.8855 SNAI3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 52.3388 cytoskeleton COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.03318 PC-3 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.16329 VZ in midlateral extrastriate cortex (area 19) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.956654 BRCA1 ENCODE Transcription Factor Targets 1.0 null DDX27 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.76455 KPL-4 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.76443 EFM-192B Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.14711 NCI-H847 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.955387 SP in temporal polar cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.911365 Brain Lower Grade Glioma_LGG_TCGA-HW-7493-01A-11R-2027-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null 496100593_TCx_no dementia_TBI_95-99_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 3.45146 UBTF_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null MYC_HepG2_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null BICR 78 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.938239 Pheochromocytoma and Paraganglioma_PCPG_TCGA-QT-A5XJ-01A-11R-A35K-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null TCF12_HepG2_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null HPAC Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.848207 PBX3 ENCODE Transcription Factor Targets 1.0 null Epidermis TISSUES Curated Tissue Protein Expression Evidence Scores 2025 1.0 4.0 496100595_PCx_probable Alzheimer's disease_no TBI_95-99_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 4.7837 HEL CCLE Cell Line Gene CNV Profiles 1.0 1.91929 SW1573 COSMIC Cell Line Gene Mutation Profiles 1.0 null SZ in subgenual cingulate cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.846815 TEAD4_HepG2_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null SAP30 ENCODE Transcription Factor Targets 1.0 null GSE111061_1_v_0_tofacitinib_human RummaGEO Drug Perturbation Signatures -1.0 null TCC-PAN2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.28018 JHH-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.858014 NB14 COSMIC Cell Line Gene Mutation Profiles 1.0 null Kidney renal clear cell carcinoma_KIRC_TCGA-A3-3365-01A-01R-0864-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null CALU-3 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.847282 COLO680N CCLE Cell Line Gene CNV Profiles -1.0 -3.21049 preoptic region, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.13784 organelle part COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.03318 intracellular organelle part COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.03318 lateral subdivision of BNST Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.26283 NFIC JASPAR Predicted Human Transcription Factor Targets 2025 1.0 104.376 KDM5A ENCODE Transcription Factor Targets 1.0 null H3K27me3_keratinocyte_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null YKG-1 COSMIC Cell Line Gene Mutation Profiles 1.0 null HSC4 CCLE Cell Line Gene CNV Profiles -1.0 -1.75853 JUND_HepG2_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null Peritubular contractile cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.672 Bladder Urothelial Carcinoma_BLCA_TCGA-E5-A4U1-01A-11R-A31N-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null EMILIN complex COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 1.369 inner SZ in superolateral temporal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.07429 NCOR1 ENCODE Transcription Factor Targets 1.0 null HEL Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.77671 NCI-H720 COSMIC Cell Line Gene Mutation Profiles 1.0 null RL Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.28027 Lung adenocarcinoma_LUAD_TCGA-44-7669-01A-21R-2066-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null lateral intermediate part of entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.59802 PHF8 ENCODE Transcription Factor Targets 1.0 null HS 940.T Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.28027 Acute Myeloid Leukemia_LAML_TCGA-AB-2908-03A-01T-0740-13 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null SIX2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 21.4605 EZH2_keratinocyte_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Brain Lower Grade Glioma_LGG_TCGA-S9-A6TS-01A-12R-A33Z-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null VZ in thalamic region Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -2.88095 Intraciliary transport particle COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.685 CCK-81 COSMIC Cell Line Gene Mutation Profiles 1.0 null YY1_ECC-1_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null ATF1 ENCODE Transcription Factor Targets 1.0 null CPHXL2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.63257 HCC630 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -2.99545 HCC515 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.27738 496100648_PCx_no dementia_no TBI_90-94_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.59948 PCI-15A COSMIC Cell Line Gene CNV Profiles -1.0 -5.12655 CBX3_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null DB Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.967508 FOSL2_HepG2_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null MYC_MCF-7_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null WIDR Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.28018 MAX_H1-hESC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null H3K4me1_keratinocyte_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null CTCF_MCF-7_hg19_7 ENCODE Transcription Factor Binding Site Profiles 1.0 null SUM52PE Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles -1.0 -0.755917 macromolecular complex GO Cellular Component Annotations 2015 1.0 null TRIM28_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null TFAP2A CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.39085 MAX::MYC JASPAR Predicted Human Transcription Factor Targets 2025 1.0 20.7143 Edinger-Westphal nucleus, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.904937 Kidney renal clear cell carcinoma_KIRC_TCGA-CZ-5458-11A-01R-1503-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null NCI-H1373 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.887772 CAL12T CCLE Cell Line Gene CNV Profiles 1.0 1.37908 rostral ventral respiratory cell group Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.05453 EZH2_fibroblast of dermis_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE150072,GSE169209_6_v_11_qser1_human RummaGEO Gene Perturbation Signatures -1.0 null ZNF816 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 42.9896 H3K27ac_K562_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null superior frontal gyrus, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.36584 Lung adenocarcinoma_LUAD_TCGA-44-A47A-01A-21R-A24H-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null SIX1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 18.7924 Dermal papilla TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.167 BLOC-1 complex COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.954 Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-FU-A3HZ-01A-11R-A213-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null lateral hypothalamic area, tuberal region, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.851072 SW13 COSMIC Cell Line Gene Mutation Profiles 1.0 null BHLHE40_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null H3K4me3_K562_hg19_3 ENCODE Histone Modification Site Profiles 1.0 null solitary nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.958553 Lung adenocarcinoma_LUAD_TCGA-64-5781-01A-01R-1628-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null