association	dataset	threshold value	standardized value
Alimentary canal	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
SNU-C1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.860999
FOS	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.0201
KYO1	DepMap CRISPR Gene Dependency	1.0	3.90648
Gastrointestinal tract	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
intracellular part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.040403
Small intestine	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Ebf2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	71.9644
SOX10	MotifMap Predicted Transcription Factor Targets	1.0	null
TE6	DepMap CRISPR Gene Dependency	1.0	2.63967
HAND2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.6685
K562	DepMap CRISPR Gene Dependency	1.0	2.14006
Rhox11	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	42.9697
Sox7	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	67.3941
TBX15	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.6839
ventrolateral prefrontal cortex_24 pcw_M_12288	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.910918
primary visual cortex (striate cortex, area V1/17)_3 yrs_F_12836	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.38404
gastrointestinal tract	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Nr5a1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	29.2983
Spi1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	95.7493
NUGC-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14667
Head and Neck squamous cell carcinoma_HNSC_TCGA-WA-A7H4-01A-21R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Irf1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	197.23
RMUGS	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33629
Dux	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	36.8595
SRY	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.0
SNB75	CCLE Cell Line Gene CNV Profiles	1.0	1.35067
Nr2f6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	69.2261
Prdm4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	90.8645
COV413B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.24516
Pheochromocytoma and Paraganglioma_PCPG_TCGA-SP-A6QJ-01A-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Six4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	21.5807
SIHA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.41252
intracellular non-membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
Hmx2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	63.3749
Developmental Biology	Reactome Pathways 2024	1.0	null
HCC1493	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.76313
PEO4	DepMap CRISPR Gene Dependency	1.0	2.49119
EZH2_endothelial cell of umbilical vein_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
posteroventral (inferior) parietal cortex_13 pcw_M_12820	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.92491
Sacrospinalis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.033
POU5F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.2088
ISL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	12.8965
Thap11	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	127.702
HCC1395	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.809053
NFATC4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.9555
FOS::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.6501
496100418_TCx_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.26841
intermediate filament	GO Cellular Component Annotations 2015	1.0	null
PA-TU-8988S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0653
EP300	ENCODE Transcription Factor Targets	1.0	null
SCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19536
cellular_component	LOCATE Predicted Protein Localization Annotations	1.0	null
Foxf1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	56.9755
PROP1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.1516
KPL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.24448
POU6F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.6484
organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
NCI-H1792	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09753
RT11284	CCLE Cell Line Gene CNV Profiles	1.0	1.41721
organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.04073
ATF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.6601
ventrolateral prefrontal cortex_3 yrs_F_12836	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.85984
SP1	ENCODE Transcription Factor Targets	1.0	null
NFATC3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.5288
HNF4G	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.6228
COV413A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28216
KMS11	DepMap CRISPR Gene Dependency	1.0	2.20317
SOX2-16153702-HESCS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
HDAC2_H1-hESC_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H345	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.88995
Viscus	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Bcl11b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	129.078
FOXL1	JASPAR Predicted Transcription Factor Targets	1.0	null
SUPHD1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.85834
Prostate adenocarcinoma_PRAD_TCGA-HC-7745-01A-11R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MYF5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.2961
Zbtb2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	55.525
Shox2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	43.8791
TBXT	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.3653
Nr2e1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	31.1169
CAKI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.965513
GID complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.83
ETV5::DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.088
Hnf1a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	31.4436
ZR-75-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.11102
KM12	CCLE Cell Line Gene CNV Profiles	-1.0	-1.68387
Sox1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	170.384
PANC0213	CCLE Cell Line Gene CNV Profiles	-1.0	-1.52786
PMC8684775-CTM2-11-e640-s002.xlsx-Sheet1-Table_S3_MAF_file_of_the_CCS_samples_MAF	Rummagene Transcription Factor Associations 2026	1.0	null
NCI-H1355	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16388
PBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.1259
NCI-H446	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.927158
NIHOVCAR3	CCLE Cell Line Gene CNV Profiles	1.0	1.34896
bone marrow	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.392309
primary motor cortex (area M1, area 4)_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.1262
TFAP2A-17053090-MCF7-human	ChEA Transcription Factor Binding Site Profiles	1.0	null
Dmbx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.6911
PRC_Partial Depletion_GDS3531_563_human_U2OS cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
H3K27me3_Breast Myoepithelial Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
Collecting duct cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.788
protein binding	GO Molecular Function Annotations 2015	1.0	null
Creb5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	21.4996
ATM_KD_GSE54268_663_human_MCF-10A	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
amygdaloid complex_16 pcw_M_12837	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.02387
dorsolateral prefrontal cortex_37 yrs_M_12303	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.2502
NCI-H2106	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.69903
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.24516
Ebf4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	42.373
cell	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
VCAP	CCLE Cell Line Gene CNV Profiles	1.0	1.74917
HNF1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.6758
CAOV4	DepMap CRISPR Gene Dependency	1.0	4.31301
DOV13	CCLE Cell Line Gene CNV Profiles	1.0	1.54709
SALL4-22934838-CD34+-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
CEBPA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.4618
Foxo1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	97.7501
cerebellar cortex_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.848819
NKX6-3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.6997
Nr1h3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	46.4702
MGA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.8971
DB	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.999981
Longissimus thoracis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.136
Stat5b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	51.9964
Neurod2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	136.757
posteroventral (inferior) parietal cortex_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.25057
Stat4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	32.2875
NIH:OVCAR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.87059
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4351-01A-01R-1289-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ZNF24	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	49.9912
MAZ_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-BL-A5ZZ-01A-31R-A30C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
A-CA-04-2009(H1N1)_0Hour_None_GSE40844	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	2.0538
Jun	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	40.6789
NCI-H889	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.57197
POU4F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	50.0595
cell part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
H3K4me1_H1-hESC_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Stat6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	68.4287
Tcf12	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	135.916
DMRTC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.738
anterior (rostral) cingulate (medial prefrontal) cortex_15 yrs_M_12299	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.856008
Lhx8	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	17.7831
PLCPRF5	CCLE Cell Line Gene CNV Profiles	1.0	1.4275
JHU029	DepMap CRISPR Gene Dependency	1.0	3.80275
TFAP2A	ChEA Transcription Factor Targets	1.0	null
COV504	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0653
KLM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.94251
CA-SKI	COSMIC Cell Line Gene Mutation Profiles	1.0	null
SOX13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.5178
JEG3	DepMap CRISPR Gene Dependency	1.0	4.21739
Creb3l2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.5163
Pax7	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	53.6717
CL14	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34754
PAX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.4884
ZNF76	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.0779
ventrolateral prefrontal cortex_16 pcw_M_12837	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.856008
LB771HNC	DepMap CRISPR Gene Dependency	1.0	4.98506
Keratin filament	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.41
orbital frontal cortex_13 pcw_M_12888	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.14113
organelle part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
Foxn1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	14.7765
hippocampus (hippocampal formation)_8 pcw_M_13058	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.22058
FOSL2::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.3946
ELK1::HOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.5179
molecular_function	GO Molecular Function Annotations 2015	1.0	null
GATA3-21878914-MCF-7-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
primary auditory cortex (core)_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.27402
MAF::NFE2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.5661
TGIF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.5634
NCI-H1666	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.999013
STAT3	ENCODE Transcription Factor Targets	1.0	null
ZNF317	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	54.2066
Pheochromocytoma and Paraganglioma_PCPG_TCGA-QR-A70T-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
mediodorsal nucleus of thalamus_3 yrs_F_12836	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.40189
TBX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.4448
ELK1::HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.6707
Nkx3-2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	51.9837
Npas4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	26.3618
Mo-B cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.626
HCC515	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.33008
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-EK-A2IR-01A-11R-A180-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Alx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	17.4396
primary somatosensory cortex (area S1, areas 3,1,2)_37 yrs_M_12303	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.995832
inferolateral temporal cortex (area TEv, area 20)_23 yrs_M_12300	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.03672
SNU-1040	COSMIC Cell Line Gene Mutation Profiles	1.0	null
PANC1005	CCLE Cell Line Gene CNV Profiles	-1.0	-1.32228
Pheochromocytoma and Paraganglioma_PCPG_TCGA-QR-A702-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
posterior (caudal) superior temporal cortex (area 22c)_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.984718
Hmx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.639
Esrrg	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	45.1348
OCI-M2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.26286
primary visual cortex (striate cortex, area V1/17)_23 yrs_M_12300	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-2.34028
C3A	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Hmga1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	117.388
Twist2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	89.4472
ZNF263	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	50.9301
SALL4	ChEA Transcription Factor Targets	1.0	null
inferolateral temporal cortex (area TEv, area 20)_13 pcw_F_12834	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.35931
ZNF8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.7677
Nr2e3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	36.0
TEAD4_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Atoh1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	70.7904
Sox17	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	70.9294
GATA1::TAL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.6833
NANOG-16153702-HESCS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
RT-112	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.64234
Dlx5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	17.9453
KYO1	CCLE Cell Line Gene CNV Profiles	1.0	1.64518
dorsolateral prefrontal cortex_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.1262
RHOXF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.1232
Nobox	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	33.2632
PHOX2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.8924
Dlx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	40.5315
Erg	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	85.0671
Hoxa11	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.2054
Nkx2-1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	73.8404
GR-M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.57197
RT112	DepMap CRISPR Gene Dependency	1.0	3.0822
Barr body	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.855
SP1_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
primary somatosensory cortex (area S1, areas 3,1,2)_13 pcw_M_12888	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.51913
TWIST1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.7799
SOX10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.7182
KLE	CCLE Cell Line Gene CNV Profiles	1.0	1.35237
ZNF331	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.3513
Rfx6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	89.4166
primary auditory cortex (core)_12 pcw_F_12835	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.15123
primary visual cortex (striate cortex, area V1/17)_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.897711
ZNF184	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.8616
Keratin-associated protein, PMG type	InterPro Predicted Protein Domain Annotations	1.0	null
ventrolateral prefrontal cortex_13 pcw_F_12834	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.92491
ZNF354C	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.75
EFM-192B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.874084
Head and Neck squamous cell carcinoma_HNSC_TCGA-UF-A71A-01A-22R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HCC2885	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.94251
TEN	DepMap CRISPR Gene Dependency	1.0	2.39439
Ar	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	42.8159
FOS::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.6499
intermediate filament cytoskeleton	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
FERD3L	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.2415
Hand1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	42.871
LOX-IMVI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.999013
KM-12	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.50713
EZH2_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SETDB1	ENCODE Transcription Factor Targets	1.0	null
ventrolateral prefrontal cortex_30 yrs_F_12290	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.14627
mesenchymal stromal cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.30073
Zfp335	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	71.7381
MAFG::NFE2L1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.9049
Pheochromocytoma and Paraganglioma_PCPG_TCGA-WB-A81D-01A-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HEL9217	CCLE Cell Line Gene CNV Profiles	1.0	2.66837
HCC2279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.909709
POU2F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.2162
posteroventral (inferior) parietal cortex_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.92491
PMC11474056-pnas.2404841121.sd01.xlsx-Supplemental_Table_8_Fig1G-H-Supplemental_Table_8_Transcriptomic_overlap_between_LPS_and_Sepsis_and_or_Tuberculosis_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
MDA-MB-415	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.874827
Sox5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	29.8226
PMC9174176-41467_2022_30924_MOESM6_ESM.xlsx-OC3-SYMBOL_ONECUT3	Rummagene Transcription Factor Associations 2026	1.0	null
HDAC2	ENCODE Transcription Factor Targets	1.0	null
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.050729
LOVO	DepMap CRISPR Gene Dependency	1.0	2.08791
TP53_01_68	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	3.85394
Nr1h3::Rxra	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	39.1647
OVCAR-5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.971054
TEAD4	ENCODE Transcription Factor Targets	1.0	null
PATU8988T	DepMap CRISPR Gene Dependency	1.0	2.8925
NCIH2110	CCLE Cell Line Gene CNV Profiles	-1.0	-1.89812
ZBTB26	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.5255
3-M syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.304
SETDB1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MHHES1	DepMap CRISPR Gene Dependency	1.0	2.76352
LOXIMVI	COSMIC Cell Line Gene Mutation Profiles	1.0	null
primary visual cortex (striate cortex, area V1/17)_19 pcw_F_12885	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.32439
ZNF35	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.8998
NCI-H2110	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.10548
H3K4me1_H1 BMP4 Derived Mesendoderm Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
Sox11	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	66.4902
MKN1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
SNAI3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.6561
HOXB2::ELK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.7125
primary motor cortex (area M1, area 4)_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.37598
striatum_21 pcw_F_12365	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	3.05385
Pulmonary microvascular endothelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.502
primary motor cortex (area M1, area 4)_8 yrs_M_12841	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.847662
MEIS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	54.9426
chromosomal part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.04638
ETV1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.1126
HCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.860999
MOGGCCM	CCLE Cell Line Gene CNV Profiles	1.0	1.35576
HCC1143	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.643548
H3K4me1_H1	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
striatum_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.07446
Spz1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	66.5833
orbital frontal cortex_12 pcw_F_12960	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.09695
NANOG_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Atf3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	33.2707
primary somatosensory cortex (area S1, areas 3,1,2)_15 yrs_M_12299	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.5519
GBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.199
HCC1500	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.0519
intracellular	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
CDX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.7707
small intestine	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
TRAPP complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.653
ZR751	CCLE Cell Line Gene CNV Profiles	-1.0	-1.35365
Isl1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	26.9328
PMC4149371-pone.0105180.s010.xls-NANOG-GENE_NANOG	Rummagene Transcription Factor Associations 2026	1.0	null
HNF4A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	52.8495
Hmx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.2838
Prdm5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	40.8392
OSR2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.7716
FLI1::DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.6344
HCC1143	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.3217
SUPM2	DepMap CRISPR Gene Dependency	1.0	2.30325
Msgn1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	39.7509
mediodorsal nucleus of thalamus_4 mos_M_12296	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.83826
alimentary canal	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
primary visual cortex (striate cortex, area V1/17)_13 yrs_F_12831	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.98369
Stat2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	169.545
mpkCCD cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.13
TYKNU	DepMap CRISPR Gene Dependency	1.0	5.74356
SNU46	DepMap CRISPR Gene Dependency	1.0	2.81711
HCC366	CCLE Cell Line Gene CNV Profiles	-1.0	-2.48591
ventrolateral prefrontal cortex_4 mos_M_12296	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-2.1399
BT474	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.857591
NCI-H2081	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.920542
intracellular part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
Stat5a::Stat5b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	44.6683
Kidney renal clear cell carcinoma_KIRC_TCGA-CZ-5462-01A-01R-1503-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MAFA	MotifMap Predicted Transcription Factor Targets	1.0	null
JHH-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.874084
NCIN87	CCLE Cell Line Gene CNV Profiles	-1.0	-1.83007
SOX2	ChEA Transcription Factor Targets	1.0	null
PL45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.15723
OC316	DepMap CRISPR Gene Dependency	1.0	4.14443
SW872	COSMIC Cell Line Gene Mutation Profiles	1.0	null
ZNF341	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.7697
AN3-CA	COSMIC Cell Line Gene Mutation Profiles	1.0	null
SNU387	CCLE Cell Line Gene CNV Profiles	-1.0	-1.75488
CHD2	ENCODE Transcription Factor Targets	1.0	null
Rarb	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	138.122
496100646_TCx_probable Alzheimer's disease_no TBI_82_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	18.4573
Zic2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	95.3103
MYF6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.1753
mediodorsal nucleus of thalamus_8 yrs_M_12841	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.16806
HEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.19301
macromolecular complex	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
NCI-N417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.97387
posterior (caudal) superior temporal cortex (area 22c)_16 pcw_M_12287	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.967257
Stat5a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	44.9406
posteroventral (inferior) parietal cortex_37 yrs_M_12303	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.844228
protein complex	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
SUP-HD1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
H3K27ac_H1-hESC_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
dorsolateral prefrontal cortex_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.833334
KHM-1B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.84424
Bhlha15	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	123.666
UCSD-242L	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.920542
Nr1h2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	49.3488
PU.1	MotifMap Predicted Transcription Factor Targets	1.0	null
skeletal system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052368
NCI-H1781	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.84424
HT-29	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.966235
PA-TU-8902	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.94251
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-GS-A9TV-01A-11R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
A-431	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20143
Longissimus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.071
Nkx3-1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	16.6421
ONECUT2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8472
Brain Lower Grade Glioma_LGG_TCGA-CS-6290-01A-11R-1708-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Rectum adenocarcinoma_READ_TCGA-DC-6155-01A-11R-1660-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
posteroventral (inferior) parietal cortex_24 pcw_M_12288	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.14627
NCIH2106	CCLE Cell Line Gene CNV Profiles	1.0	1.74159
DBTRG05MG	CCLE Cell Line Gene CNV Profiles	1.0	1.86068
MYOG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.9976
NANOG	ENCODE Transcription Factor Targets	1.0	null
Sox6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	33.9839
Arid5a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	61.116
KINGS1	DepMap CRISPR Gene Dependency	1.0	3.94974
D423MG	DepMap CRISPR Gene Dependency	1.0	5.21951
OVISE	DepMap CRISPR Gene Dependency	1.0	2.0204
intestine	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
amygdaloid complex_30 yrs_F_12290	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.16532
TFAP2A-17053090-MCF-7-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
NANOG-16153702-HESC-human	ChEA Transcription Factor Binding Site Profiles	1.0	null
PMC12000322-41419_2025_7601_MOESM9_ESM.xlsx-H3122-AR_somatic_filtered_PASS-version_2_4_AR	Rummagene Transcription Factor Associations 2026	1.0	null
POLR2A_H1-hESC_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KP4	DepMap CRISPR Gene Dependency	1.0	2.21888
HEY	DepMap CRISPR Gene Dependency	1.0	2.03002
PANC0813	DepMap CRISPR Gene Dependency	1.0	2.60619
TUHR10TKB	CCLE Cell Line Gene CNV Profiles	1.0	1.60817
Whole body	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
inferolateral temporal cortex (area TEv, area 20)_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.2798
orbital frontal cortex_24 pcw_M_12288	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.890555
Arx	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.5867
COLO320	CCLE Cell Line Gene CNV Profiles	-1.0	-2.27735
SCRT1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.3501
Lef1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	22.7687
H3K9me3_fibroblast of lung_hg19_3	ENCODE Histone Modification Site Profiles	1.0	null
EW16	DepMap CRISPR Gene Dependency	1.0	2.89691
primary visual cortex (striate cortex, area V1/17)_16 pcw_M_12287	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.59613
Neuro D	MotifMap Predicted Transcription Factor Targets	1.0	null
MDAMB231	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.79048
Arid3a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	40.2963
Prdm15	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	49.9571
dorsolateral prefrontal cortex_23 yrs_M_12300	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.05365
PHOX2B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.0183
NEUROG2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.7862
cell part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.040263
SP1_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
OE33	DepMap CRISPR Gene Dependency	1.0	2.30076
ZNF136	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.4411
HCC630	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.858843
EP300_H1-hESC_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
intracellular organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
striatum_23 yrs_M_12300	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.6944
STAT3_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Gata3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	50.6978
posterior (caudal) superior temporal cortex (area 22c)_16 pcw_M_12879	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.844228
primary motor cortex (area M1, area 4)_15 yrs_M_12299	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.897711
HDAC2_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
striatum_8 yrs_M_12841	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.61953
NCI-H1373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.01966
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4335-01A-01R-1289-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SET2	CCLE Cell Line Gene CNV Profiles	1.0	2.04364
protein complex	GO Cellular Component Annotations 2015	1.0	null
NANOG	ChEA Transcription Factor Targets	1.0	null
NCIH1694	CCLE Cell Line Gene CNV Profiles	1.0	2.0651
H3K9me3_GM12878_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
VMRCLCD	CCLE Cell Line Gene CNV Profiles	-1.0	-1.76809
NCI-H209	COSMIC Cell Line Gene Mutation Profiles	1.0	null
JDP2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.7069
Hic1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	27.9938
YY1	ENCODE Transcription Factor Targets	1.0	null
TEAD4_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TBX5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.849
MHHCALL2	CCLE Cell Line Gene CNV Profiles	1.0	1.72624
NCI-H2810	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.927158
cellular_component	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
SW48	DepMap CRISPR Gene Dependency	1.0	2.47963
Mafg	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	60.7954
CFPAC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.926123
Nfat5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	142.767
SUM52PE	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.840596
ERF::FOXO1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.5507
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
striatum_30 yrs_F_12290	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.25057
SOX8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.9173
Arid3b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	30.4182
Mesenchymal stromal cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.157
MSC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.0624
primary somatosensory cortex (area S1, areas 3,1,2)_12 pcw_F_13060	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.984718
ZBTB17	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.7819
HOXA10_01_358	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	-1.0	-0.98866
TBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.0879
Runx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	48.397
icSARS CoV_12Hour_None_GSE37827	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-0.814415
Lhx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	82.1
SUDHL8	DepMap CRISPR Gene Dependency	1.0	4.7836
cytoskeletal part	GO Cellular Component Annotations 2015	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-CH-5748-01A-11R-1580-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
H3K4me2_H1-hESC_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
23132-87	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Crx	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	26.3674
YD15	DepMap CRISPR Gene Dependency	1.0	3.85488
Elf5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	70.5892
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
Kidney Chromophobe_KICH_TCGA-KN-8426-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NURR1	MotifMap Predicted Transcription Factor Targets	1.0	null
ZBTB18	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.4546
Parathyroid gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.849
stromal cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.687592
OVKATE	CCLE Cell Line Gene CNV Profiles	-1.0	-1.57996
ETV2::HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.9864
Head and Neck squamous cell carcinoma_HNSC_TCGA-QK-A6VC-01A-23R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
U2OS	CCLE Cell Line Gene CNV Profiles	1.0	1.45154
HCC1806	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.48383
primary visual cortex (striate cortex, area V1/17)_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.65637
dorsolateral prefrontal cortex_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.02596
Mecom	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	104.407
CAL12T	CCLE Cell Line Gene CNV Profiles	1.0	1.57376
Zic3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	114.845
MDA-MB-330	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.25978
Mafb	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	32.0728
Zic1::Zic2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	105.476
MEIS2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.0019
Bach1::Mafk	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	80.7544
NCI-H2135	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.47444
cell part	GO Cellular Component Annotations 2015	1.0	null
Sarcoma_SARC_TCGA-K1-A42X-01A-11R-A24X-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BLOC-1 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.741
Sox3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	27.9465
HSC4	CCLE Cell Line Gene CNV Profiles	-1.0	-1.42209
HCC366	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.91953
cSARS Bat SRBD_12Hour_None_GSE37827	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.71448
CEBPG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.7757
NCI-H2198	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.860999
YMB-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1103
amygdaloid complex_24 pcw_M_12288	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.50122
connective tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060622
EW22	DepMap CRISPR Gene Dependency	1.0	5.22058
FOXC1	JASPAR Predicted Transcription Factor Targets	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-XJ-A9DI-01A-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
JHU022	DepMap CRISPR Gene Dependency	1.0	2.80885
KARPAS-45	COSMIC Cell Line Gene Mutation Profiles	1.0	null
TP73	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.3762
Gli2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	32.1754
HCC2998	COSMIC Cell Line Gene Mutation Profiles	1.0	null
ZNF274	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.2121
ZNF175	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.8516
Dmrt1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.125
LS-180	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Keratinization	Reactome Pathways 2024	1.0	null
Pheochromocytoma and Paraganglioma_PCPG_TCGA-W2-A7HF-01A-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-YL-A8SC-01A-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MOLP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.999981
3M complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.388
NTERA-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.88995
U266B1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.78919
Intestine	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
EZH2_mammary epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SNU-387	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.94251
U-2 OS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11691
A172	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.46376
animal	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
NCI-H2009	COSMIC Cell Line Gene Mutation Profiles	1.0	null
NCIH2887	DepMap CRISPR Gene Dependency	1.0	4.20399
Hoxd13	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	56.9371
Foxo3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	99.3389
CMK115	CCLE Cell Line Gene CNV Profiles	1.0	2.2351
SET-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.96836
SUM44PE	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-2.2518
Gfi1b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	77.3907
HEL	CCLE Cell Line Gene CNV Profiles	1.0	2.2208
Brain Lower Grade Glioma_LGG_TCGA-TQ-A7RV-01A-21R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
FOXO1::ELK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.2889
cerebellar cortex_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.17765
RBBP5_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CMK	CCLE Cell Line Gene CNV Profiles	1.0	1.91504
BLOC complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.642
senescence-associated heterochromatin focus	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.978
Gli1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	33.8516
TAF2-19829295-ESCS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
NCI-H2461	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00604
EZH2_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KP4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19536
K-562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0581
MCAS	DepMap CRISPR Gene Dependency	1.0	3.08767
SNU-81	COSMIC Cell Line Gene Mutation Profiles	1.0	null
SALL4-22934838-CD34+-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
NCI-H1781	COSMIC Cell Line Gene Mutation Profiles	1.0	null
ERF::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.9452
PE/CA-PJ15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.15723
H2AFZ_CD14-positive monocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.46151
PMC12000322-41419_2025_7601_MOESM9_ESM.xlsx-H3122-AR_somatic_filtered_PASS-Unnamed_47_AR	Rummagene Transcription Factor Associations 2026	1.0	null
SNUC4	DepMap CRISPR Gene Dependency	1.0	4.64098
NCI-H2052	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.46151
SCC-9	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.973059
A-Netherlands-602-2009(H1N1)_18Hour_None_GSE40844	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.56398
PMC10290283-biol-2022-0622-sm3.pdf-20-NEUROD4_NEUROD4	Rummagene Transcription Factor Associations 2026	1.0	null
SOX18	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.9759
MCF10F	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.2386
STAT6	MotifMap Predicted Transcription Factor Targets	1.0	null
Prdm14	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	17.8787
YY1_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
whole body	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
primary auditory cortex (core)_13 pcw_F_12834	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.1262
TBX20	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.4066
RT112	CCLE Cell Line Gene CNV Profiles	1.0	1.78132
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
striatum_16 pcw_M_12879	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.78274
COV504	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36104
organelle part	GO Cellular Component Annotations 2015	1.0	null
SNU1077	DepMap CRISPR Gene Dependency	1.0	2.15849
cytoskeletal part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
extracellular region	LOCATE Predicted Protein Localization Annotations	1.0	null
Zfp809	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	31.6186
NCI-N87	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28216
TK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11691
OVKATE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.50713
MCF12A	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.725617
Nrf1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	65.3131
TBX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.9909
intermediate filament	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
SG231	DepMap CRISPR Gene Dependency	1.0	2.1872
Hair follicle inner root sheath	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.686
TK-10	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.853437
MEF2B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.7196
cellular_component	GO Cellular Component Annotations 2015	1.0	null
COV362	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20143
Pheochromocytoma and Paraganglioma_PCPG_TCGA-QR-A70X-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.050634
IKZF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.5434
Brain Lower Grade Glioma_LGG_TCGA-QH-A6X9-01A-12R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RPMI-7951	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00604
viscus	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
ZR7530	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.5919
Rarg	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	93.1281
NCI-H661	COSMIC Cell Line Gene Mutation Profiles	1.0	null
chromosome, centromeric region	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.42396
Lhx4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	22.7141
SOX2-16153702-HESC-human	ChEA Transcription Factor Binding Site Profiles	1.0	null
primary auditory cortex (core)_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.58602
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
UMUC10	DepMap CRISPR Gene Dependency	1.0	4.6512
Hairy cell leukemia cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.596
Nfatc2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	107.422
ZR-75-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-3.24364
VMRC-LCD	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.76363
Ikzf3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	63.2392
Lhx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	31.0176
KLM1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.1247
orbital frontal cortex_21 pcw_M_12886	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.14113
icSARS CoV_30Hour_None_GSE37827	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.55522
G84	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.858484
NCI-H1623	COSMIC Cell Line Gene Mutation Profiles	1.0	null
MEIS3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.9631
PMC12179407-MCO2-6-e70261-s004.xlsx-up_TET3-KO_PQ_vs_Cas9_PQ-Unnamed_10_TET3	Rummagene Transcription Factor Associations 2026	1.0	null
COLO 320DM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.80435
Hoxa13	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	64.357
Ppara	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	32.6654
Tcf21	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	155.77
cytoskeleton	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
SNU-484	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.41252
Pheochromocytoma and Paraganglioma_PCPG_TCGA-QR-A6GR-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ZSCAN16	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.6736
EOMES	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.8373
primary somatosensory cortex (area S1, areas 3,1,2)_16 pcw_M_12837	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.51109
NCI-H2595	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.926123
Head and Neck squamous cell carcinoma_HNSC_TCGA-CN-5359-01A-01R-1436-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Ascl2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	261.78
H3K27me3_SK-N-SH_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PCI15A	DepMap CRISPR Gene Dependency	1.0	2.46182
intracellular organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.040802
CW-2	COSMIC Cell Line Gene Mutation Profiles	1.0	null
ETV5::HOXA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.337
FOXO1::ELF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.953
SNAI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.3312
TRIM28	ENCODE Transcription Factor Targets	1.0	null
SOX2-21211035-LN229-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
OC-314	COSMIC Cell Line Gene Mutation Profiles	1.0	null
FOS::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.4277
DLX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.4598
COLO-792	COSMIC Cell Line Gene Mutation Profiles	1.0	null
TRIM28_K562_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Lung adenocarcinoma_LUAD_TCGA-55-8097-01A-11R-2241-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Kidney Chromophobe_KICH_TCGA-KN-8431-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
primary motor cortex (area M1, area 4)_3 yrs_F_12836	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.870676
PE01	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.15723
RBBP5	ENCODE Transcription Factor Targets	1.0	null
SKMG1	DepMap CRISPR Gene Dependency	1.0	3.82969
BCOR complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.915
Hand1::Tcf3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	53.1379
Msx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	45.0893
Foxj3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	94.6283
CX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.966235
chromosomal region	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.107915
BHLHE22	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.9231
FOXH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.0341
posteroventral (inferior) parietal cortex_21 pcw_M_12886	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.25745
striatum_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-2.62813
Intraciliary transport particle B	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.597
Npas2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	23.3351
Nfatc1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	88.0845
PMC12000322-41419_2025_7601_MOESM9_ESM.xlsx-H3122-AR_somatic_filtered_PASS-Unnamed_60_AR	Rummagene Transcription Factor Associations 2026	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-TN-A7HJ-01A-12R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
TBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.3253
intracellular organelle part	GO Cellular Component Annotations 2015	1.0	null
KMS-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.927158
MAF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.4442
PATU8902	CCLE Cell Line Gene CNV Profiles	-1.0	-1.62031
TALL1	CCLE Cell Line Gene CNV Profiles	1.0	2.86835
HHUA	DepMap CRISPR Gene Dependency	1.0	2.99702
ERF::HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.4271
SW1088	COSMIC Cell Line Gene Mutation Profiles	1.0	null
cervix uteri	GTEx Tissue Gene Expression Profiles	1.0	1.47327
binding	GO Molecular Function Annotations 2015	1.0	null
Pheochromocytoma and Paraganglioma_PCPG_TCGA-W2-A7H5-01B-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
JHUEM1	DepMap CRISPR Gene Dependency	1.0	2.52142
NPHP complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.667
Nr5a2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	26.8232
Wt1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	61.391
PCI30	DepMap CRISPR Gene Dependency	1.0	2.22425
H3K9me3_astrocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
NCI-H187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11691
ETV2::DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.2751
ventrolateral prefrontal cortex_12 pcw_F_13060	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.13245
G292CLONEA141B1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.64189
NCI-H2804	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0653
REST	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	63.3682
Yy1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	48.1418
BACH2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.577
striatum_3 yrs_F_12836	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.14934
WIDR	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.965513
ZR-75-30	COSMIC Cell Line Gene CNV Profiles	-1.0	-5.12655
SOX21	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.1457
PC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19634
TBR1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.8194
PMC4149371-pone.0105180.s010.xls-SOX2-GENE_SOX2	Rummagene Transcription Factor Associations 2026	1.0	null
POU4F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	50.4373
Nr1h4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	25.4153
Zfp961	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	41.5663
POLR2A	ENCODE Transcription Factor Targets	1.0	null
EZH2	ENCODE Transcription Factor Targets	1.0	null
H4K20me1_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Foxj2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	93.9977
Prostate adenocarcinoma_PRAD_TCGA-G9-6362-11A-01R-1789-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Parathyroid gland disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.007
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.999981
HS 936.T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0581
SOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.2481
Ptf1a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	312.407
Vdr	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	74.5636
TOLEDO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.910754
SNU1076	CCLE Cell Line Gene CNV Profiles	-1.0	-1.76333
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.050729
NCI-H847	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.988683
Foxl2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	117.571
POU3F4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.6602
primary auditory cortex (core)_21 pcw_F_12365	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.38109
Prostate adenocarcinoma_PRAD_TCGA-VN-A88K-01A-11R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ONECUT1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.6082
MAZ	ENCODE Transcription Factor Targets	1.0	null
H3K4me3_H1-hESC_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
PMC11749115-loae020_suppl_Supplementary_Table_S2.xlsx-CHOP-high-gene_DDIT3	Rummagene Transcription Factor Associations 2026	1.0	null
TBX18	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.117
MHH-PREB-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.78919
PL45	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36046
macromolecular complex	GO Cellular Component Annotations 2015	1.0	null
DU4475	DepMap CRISPR Gene Dependency	1.0	2.06996
TFAP4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	72.2534
P63-20808887-KERATINOCYTES-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
LU99	CCLE Cell Line Gene CNV Profiles	-1.0	-2.24786
Tfcp2l1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	31.2793
Dlx2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	17.7424
LS1034	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.920542
ICC106	DepMap CRISPR Gene Dependency	1.0	2.51932
Pou5f1::Sox2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	71.6851
SCRT2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.3387
POU1F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.6302
Parathyroid carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.669
MKN-74	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.26286
Lung squamous cell carcinoma_LUSC_TCGA-56-8082-11A-01R-2247-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
EZH2_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
T47D	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.64042
Lung squamous cell carcinoma_LUSC_TCGA-22-5481-01A-31R-1949-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Nfe2l2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	81.8444
ESO51	DepMap CRISPR Gene Dependency	1.0	6.83682
Dlx4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	41.2861
BACH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.7905
MEF2D	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.7623
parietal neocortex_9 pcw_M_12833	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.05365
HS 940.T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.33352
Six3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	50.4945
CHD2_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
INA6	DepMap CRISPR Gene Dependency	1.0	2.17411
orbital frontal cortex_37 yrs_M_12303	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.940456
ZR7530	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
posterior (caudal) superior temporal cortex (area 22c)_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.22833
non-membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
TT	CCLE Cell Line Gene CNV Profiles	-1.0	-1.52353
mediodorsal nucleus of thalamus_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-2.1399
intracellular organelle part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
PMC10746608-427_2023_709_MOESM4_ESM.xlsx-SOX2_targets_enrichment-Unnamed_407_SOX2	Rummagene Transcription Factor Associations 2026	1.0	null
Olig2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	89.1875
posterior (caudal) superior temporal cortex (area 22c)_12 pcw_F_12960	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.74638
Brain Lower Grade Glioma_LGG_TCGA-S9-A7R3-01A-11R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HCC38	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.761855
cellular_component	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.040191
posteroventral (inferior) parietal cortex_30 yrs_F_12290	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.867655
intracellular part	GO Cellular Component Annotations 2015	1.0	null
EFM-192A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.966235
MAFF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.3846
Tbx6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	82.2584
striatum_12 pcw_F_12835	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.70387
U-2932	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.53066
ERF::NHLH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	64.6182
Brain Lower Grade Glioma_LGG_TCGA-E1-A7YV-01A-11R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
POU2F1::SOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.1352