association	dataset	threshold value	standardized value
MKN-74	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.26293
H3K9me3_fibroblast of lung_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
MDAMB453	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.898499
Cuticle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.598
MM1S	DepMap CRISPR Gene Dependency	1.0	3.33202
TGIF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.8173
Intraciliary transport particle A	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.729
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-G8-6324-01A-11R-2213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
primary visual cortex (striate cortex, area V1/17)_30 yrs_F_12290	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.21579
JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.4975
cytoskeletal part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
RPMI2650	DepMap CRISPR Gene Dependency	1.0	2.33812
intermediate filament	GO Cellular Component Annotations 2015	1.0	null
HCC2279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.90995
NCI-H2106	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.69932
PL45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.15773
CAMA1	DepMap CRISPR Gene Dependency	1.0	2.19692
hsa-miR-326	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
integument	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
inferolateral temporal cortex (area TEv, area 20)_4 mos_M_12296	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.5771
External side of plasma membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.91
H3K4me1_Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
NKX6-3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.0693
RT11284	DepMap CRISPR Gene Dependency	1.0	2.03975
POU2F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.5358
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.24566
COV504	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06588
SH10TC	CCLE Cell Line Gene Expression Profiles	1.0	1.35884
ATF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.0613
striatum_13 yrs_F_12831	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.0243
NCI-H345	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.89062
NCI-H2810	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.927391
HNF4G	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.3564
Sarcoma_SARC_TCGA-QQ-A5VC-01A-31R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
WDR75	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.22282
HOXC4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.3219
primary auditory cortex (core)_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.4207
NUGC-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14718
COV644	CCLE Cell Line Gene Expression Profiles	-1.0	-1.4868
TK-10	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.854503
hair	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
OVTOKO	CCLE Cell Line Gene Expression Profiles	1.0	1.46583
intracellular part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
Lung squamous cell carcinoma_LUSC_TCGA-68-A59I-01A-11R-A262-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
POU3F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.0161
organism form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052265
SET-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.96924
Liver hepatocellular carcinoma_LIHC_TCGA-CC-A7II-01A-11R-A33J-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
shoot	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.260267
posteroventral (inferior) parietal cortex_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.32235
intermediate filament	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
HCC515	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.33012
EZH2_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SET2	CCLE Cell Line Gene CNV Profiles	1.0	2.04366
ZNF582	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.0956
CREB3L4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.5482
macromolecular complex	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
KMS11	DepMap CRISPR Gene Dependency	1.0	2.27502
SHOX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.7635
primary auditory cortex (core)_13 pcw_F_12834	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.3684
PGR	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.2296
MEF2C	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	74.8099
SNU1079	CCLE Cell Line Gene Expression Profiles	1.0	1.53105
KDM5A_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TLX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.5306
COV362	DepMap CRISPR Gene Dependency	1.0	2.24469
SPIB	JASPAR Predicted Transcription Factor Targets	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-90-A4ED-01A-31R-A24Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CAMA1	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.14838
cerebellar cortex_3 yrs_F_12836	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.53633
CX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.966992
hsa-miR-19a	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
CAKI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.966274
ventrolateral prefrontal cortex_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.30414
PC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19645
primary auditory cortex (core)_12 pcw_F_13060	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.08587
CAL12T	CCLE Cell Line Gene CNV Profiles	1.0	1.57382
Lung squamous cell carcinoma_LUSC_TCGA-52-7809-01A-21R-2125-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cytoskeleton	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
ETS2	MotifMap Predicted Transcription Factor Targets	1.0	null
KATOIII	DepMap CRISPR Gene Dependency	1.0	2.69075
Intraciliary transport particle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.651
posterior (caudal) superior temporal cortex (area 22c)_21 pcw_F_12365	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.97326
COV413B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.24566
hsa-miR-4307	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
CEBPB_K562_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2A_MCF-7_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HSC4	CCLE Cell Line Gene CNV Profiles	-1.0	-1.40166
LOX-IMVI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.999226
inferolateral temporal cortex (area TEv, area 20)_13 pcw_M_12820	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.876259
OLIG3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.0626
G292CLONEA141B1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.60776
NCIH2085	CCLE Cell Line Gene CNV Profiles	-1.0	-2.01164
primary visual cortex (striate cortex, area V1/17)_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.959875
NCI-N87	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28266
primary visual cortex (striate cortex, area V1/17)_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.48511
Epidermis	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
NCI-H1666	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.999226
496100329_FWM_probable Alzheimer's disease_TBI_100+_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	11.0777
POU2F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.9988
ISX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.2624
Mo-B cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.856
RRP9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.32243
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A29G-06A-12R-A18T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
FOS_MCF 10A_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
primary visual cortex (striate cortex, area V1/17)_13 pcw_M_12888	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.08698
LS1034	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.921419
H3K9me3_astrocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057902
orbital frontal cortex_37 yrs_M_12303	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.01526
Joubert syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.033
intracellular organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
PMC6879454-Data_Sheet_1.xlsx-AA_disease-Unnamed_4_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
Dermal papilla	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.647
CEBPA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.0348
CREB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.4153
HOXD9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.0851
NIH:OVCAR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.87123
ZNF100_01_124	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	-1.0	-0.61639
Skin	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
FOXE1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	87.0039
ZNF136	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.4492
JUND_HepG2_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RT-112	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.64254
MEIS3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.9636
TFAP4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.5815
CHD1	ENCODE Transcription Factor Targets	1.0	null
FOXC1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.2327
primary visual cortex (striate cortex, area V1/17)_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.55126
DOV13	CCLE Cell Line Gene CNV Profiles	1.0	1.54717
Keratinization	Reactome Pathways 2024	1.0	null
inferolateral temporal cortex (area TEv, area 20)_12 pcw_F_13060	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.834868
SNU840	CCLE Cell Line Gene Expression Profiles	1.0	2.30854
Liver hepatocellular carcinoma_LIHC_TCGA-CC-A9FU-01A-11R-A37K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.4719
CUX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.8442
skin	GTEx Tissue Gene Expression Profiles	1.0	1.81584
PECAPJ34CLONEC12	DepMap CRISPR Gene Dependency	1.0	2.48103
G84	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.858748
TK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11707
NKX6-1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.1672
STAT3_MCF 10A_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MHHCALL2	CCLE Cell Line Gene CNV Profiles	1.0	1.72625
NCI-H2461	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00671
Lung adenocarcinoma_LUAD_TCGA-55-1592-01A-01R-0946-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
TE-9	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BARX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.6053
K-562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05829
GSS	DepMap CRISPR Gene Dependency	1.0	2.74062
H3K79me2_HeLa-S3_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
JUN::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.9357
PAX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.6047
amygdaloid complex_12 pcw_F_13060	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.89817
RI1	DepMap CRISPR Gene Dependency	1.0	2.27314
TEF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.5778
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051707
SCC25	DepMap CRISPR Gene Dependency	1.0	2.02673
HOXD4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.4638
posterior (caudal) superior temporal cortex (area 22c)_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.0243
mediodorsal nucleus of thalamus_16 pcw_M_12287	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.862536
COV504	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34341
anterior (rostral) cingulate (medial prefrontal) cortex_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.76783
CAPAN2	CCLE Cell Line Gene Expression Profiles	-1.0	-1.62795
Developmental Biology	Reactome Pathways 2024	1.0	null
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Usher syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.035
RDES	DepMap CRISPR Gene Dependency	1.0	2.15163
NCIH2110	CCLE Cell Line Gene CNV Profiles	-1.0	-1.83881
NUDHL1	CCLE Cell Line Gene Expression Profiles	1.0	1.897
TCF21	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.3494
striatum_12 pcw_F_12835	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.21401
hippocampus (hippocampal formation)_16 pcw_M_12287	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.06614
NCIH2291	DepMap CRISPR Gene Dependency	1.0	3.32419
MEF2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.5265
OCIMY7	DepMap CRISPR Gene Dependency	1.0	2.30306
GBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.9346
amygdaloid complex_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.28505
HEL	CCLE Cell Line Gene CNV Profiles	1.0	2.22092
vagina	GTEx Tissue Gene Expression Profiles	-1.0	-1.17497
HOXA5	JASPAR Predicted Transcription Factor Targets	1.0	null
SNU1076	CCLE Cell Line Gene CNV Profiles	-1.0	-1.71904
CEBPB_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
icSARS CoV_12Hour_23365422_GSE33267	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.83243
COLO320	CCLE Cell Line Gene Expression Profiles	1.0	1.59703
VMRC-LCD	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.76353
HCC1187	CCLE Cell Line Gene Expression Profiles	1.0	1.37382
GSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.7041
SIX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.9395
SNU387	CCLE Cell Line Gene CNV Profiles	-1.0	-1.7115
NFYA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.8012
CTCF	ENCODE Transcription Factor Targets	1.0	null
CEBPB	ENCODE Transcription Factor Targets	1.0	null
inferolateral temporal cortex (area TEv, area 20)_21 pcw_F_12365	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.903643
EN1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.5835
SCC-9	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.973802
LU99	CCLE Cell Line Gene CNV Profiles	-1.0	-2.24688
JIMT1	CCLE Cell Line Gene Expression Profiles	-1.0	-1.46968
PE/CA-PJ15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.15773
EFM-192A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.966992
HS 936.T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05829
CDX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.7329
POU4F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.7476
NEC8	COSMIC Cell Line Gene Mutation Profiles	1.0	null
JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.2771
hsa-miR-3159	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
LMX1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.3373
TFAP2C_01_312	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	1.00961
hsa-miR-2113	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-6938-11A-01R-1915-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HCC366	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.9197
Liver hepatocellular carcinoma_LIHC_TCGA-ED-A7PZ-01A-11R-A33R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
JDP2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.4713
CREM	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.1308
posteroventral (inferior) parietal cortex_16 pcw_M_12287	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.24844
NCIN87	CCLE Cell Line Gene CNV Profiles	-1.0	-1.77946
TOLEDO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.910994
Liver hepatocellular carcinoma_LIHC_TCGA-DD-A4NQ-01A-21R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCI-H889	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.5721
ventrolateral prefrontal cortex_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.64312
posterior (caudal) superior temporal cortex (area 22c)_21 pcw_M_12886	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.00529
Sarcoma_SARC_TCGA-DX-A7ER-01A-11R-A36F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
STAT3_MCF 10A_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
intracellular organelle part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
RBBP5_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.2068
PLCPRF5	CCLE Cell Line Gene CNV Profiles	1.0	1.42763
HT1376	CCLE Cell Line Gene Expression Profiles	-1.0	-1.96335
hippocampus (hippocampal formation)_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.77153
NKX6-2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.6053
PORCN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.02534
NCI-H1355	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16401
PANC0213	CCLE Cell Line Gene CNV Profiles	-1.0	-1.50143
HUH28	CCLE Cell Line Gene Expression Profiles	1.0	2.94633
epidermis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.234878
KPL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.24497
whole body	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
PMC5967331-41467_2018_4384_MOESM4_ESM.xlsx-Sup_data1_with_CCF_txt-Gene_PITX1	Rummagene Transcription Factor Associations 2026	1.0	null
A2780	DepMap CRISPR Gene Dependency	1.0	2.93976
SNU-484	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.41255
LC1F	CCLE Cell Line Gene Expression Profiles	1.0	1.36467
larva	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.734323
NP3	DepMap CRISPR Gene Dependency	1.0	2.61948
SCC25	CCLE Cell Line Gene Expression Profiles	-1.0	-1.68045
HCC2885	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.94274
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-C5-A7UI-01A-11R-A36F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
icSARA deltaORF6_3Hour_23365422_GSE33267	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	2.3737
macromolecular complex	GO Cellular Component Annotations 2015	1.0	null
TAL1::TCF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.4091
KP4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19548
HOXB4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.5956
H3K9me3_fibroblast of lung_hg19_3	ENCODE Histone Modification Site Profiles	1.0	null
amygdaloid complex_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.0967
Pheochromocytoma and Paraganglioma_PCPG_TCGA-WB-A822-01A-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCIH82	DepMap CRISPR Gene Dependency	1.0	3.24015
HEC50B	DepMap CRISPR Gene Dependency	1.0	3.62557
PKNOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.0684
HCC1500	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.42669
BHLHE23	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	47.3059
dorsolateral prefrontal cortex_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.21919
Androgenic alopecia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.153
BATF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.7705
hippocampus (hippocampal formation)_16 pcw_M_12837	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.22728
epidermis	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
UMUC10	DepMap CRISPR Gene Dependency	1.0	2.48685
kidney	GTEx Tissue Gene Expression Profiles	-1.0	-1.17497
PF382	DepMap CRISPR Gene Dependency	1.0	2.76544
KIJK	CCLE Cell Line Gene Expression Profiles	1.0	1.50417
HEC1	DepMap CRISPR Gene Dependency	1.0	2.68348
Sarcoma_SARC_TCGA-HB-A2OT-01A-11R-A21T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ATF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.4405
hsa-miR-3919	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
SUM185PE	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.713244
Bladder Urothelial Carcinoma_BLCA_TCGA-BL-A5ZZ-01A-31R-A30C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ATOH7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.5925
Acute Myeloid Leukemia_LAML_TCGA-AB-2935-03A-01T-0740-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
icSARS CoV_0Hour_23365422_GSE33267	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-2.16662
DB	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00019
NCI-H2135	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.47479
primary motor cortex (area M1, area 4)_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.60242
JHH-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.875092
Hair	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
cell part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
FOSL1::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.8186
ZR-75-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-3.24742
skin	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
SUPHD1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.80448
DBP	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.2843
SMC3_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
K-562	COSMIC Cell Line Gene Mutation Profiles	1.0	null
IFITM1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.47364
intermediate filament cytoskeleton	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
FOXL1	JASPAR Predicted Transcription Factor Targets	1.0	null
Cornified envelope	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.282
MEIS2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.1628
HCC1143	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.32218
primary auditory cortex (core)_37 yrs_M_12303	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.910757
NCIH1944	CCLE Cell Line Gene Expression Profiles	1.0	1.66095
SMC3	ENCODE Transcription Factor Targets	1.0	null
primary somatosensory cortex (area S1, areas 3,1,2)_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.92947
KMS-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.927391
ZNF214	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.653
COV413A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28266
PMC8452624-41467_2021_25709_MOESM12_ESM.xlsx-ST12-Unnamed_2_KLF6	Rummagene Transcription Factor Associations 2026	1.0	null
SOX15	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.0368
intracellular organelle part	GO Cellular Component Annotations 2015	1.0	null
KHM-1B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.844509
Brain Lower Grade Glioma_LGG_TCGA-FG-A60L-01A-12R-A31N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-63-A5MW-01A-11R-A26W-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NR1D1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.0858
JUND	ENCODE Transcription Factor Targets	1.0	null
HOXA5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.8628
orbital frontal cortex_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.880849
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-GS-A9TV-01A-11R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SHI1	DepMap CRISPR Gene Dependency	1.0	2.55855
FOXO1::ELF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.5622
inferolateral temporal cortex (area TEv, area 20)_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.13286
whole plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057933
primary visual cortex (striate cortex, area V1/17)_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.42143
FOXD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	104.323
Pheochromocytoma and Paraganglioma_PCPG_TCGA-QR-A708-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Kidney renal papillary cell carcinoma_KIRP_TCGA-SX-A7SN-01A-11R-A355-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
POU5F1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.2701
striatum_4 mos_M_12296	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.89171
H3K9me3_CH12.LX_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
anterior (rostral) cingulate (medial prefrontal) cortex_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.88932
VAX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.3897
DUX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.0834
adipose tissue	GTEx Tissue Gene Expression Profiles	1.0	0.834095
KLE	CCLE Cell Line Gene CNV Profiles	1.0	1.35251
D-245MG	COSMIC Cell Line Gene Mutation Profiles	1.0	null
EMX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.1505
hsa-miR-766	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
H3K9me3_endothelial cell of umbilical vein_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
hsa-miR-3153	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
orbital frontal cortex_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.0395
inferolateral temporal cortex (area TEv, area 20)_13 pcw_F_12834	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.824478
Kidney renal clear cell carcinoma_KIRC_TCGA-B2-A4SR-01A-11R-A266-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
LS513	CCLE Cell Line Gene Expression Profiles	1.0	1.80244
ZBTB17	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.2819
ventrolateral prefrontal cortex_12 pcw_F_13060	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.57657
Liver hepatocellular carcinoma_LIHC_TCGA-BC-A8YO-01A-11R-A37K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GID complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.009
Integument	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
CHLA06ATRT	DepMap CRISPR Gene Dependency	1.0	3.31691
OVCAR-5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.971801
Prostate adenocarcinoma_PRAD_TCGA-EJ-A65D-01A-11R-A30B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
POU4F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.6684
HCC1569	CCLE Cell Line Gene Expression Profiles	-1.0	-1.84473
embryonic structure	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052775
extracellular region	LOCATE Predicted Protein Localization Annotations	1.0	null
TGIF2LX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.8865
orbital frontal cortex_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.50027
HCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.861262
NOTO	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.6167
TGIF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.7549
ML-2	COSMIC Cell Line Gene Mutation Profiles	1.0	null
cell	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
NIHOVCAR3	CCLE Cell Line Gene CNV Profiles	1.0	1.3491
H513	COSMIC Cell Line Gene Mutation Profiles	1.0	null
SF767	DepMap CRISPR Gene Dependency	1.0	2.04597
NCI-H2110	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.10618
SN12C	COSMIC Cell Line Gene Mutation Profiles	1.0	null
ZR7530	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
cerebellar cortex_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.90443
HGC27	CCLE Cell Line Gene Expression Profiles	-1.0	-1.89711
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-VS-A8EH-01A-11R-A36F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Pheochromocytoma and Paraganglioma_PCPG_TCGA-RW-A67X-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PRRX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.3233
intracellular part	GO Cellular Component Annotations 2015	1.0	null
VCAP	CCLE Cell Line Gene CNV Profiles	1.0	1.74918
CEBPB_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
primary visual cortex (striate cortex, area V1/17)_19 pcw_F_12885	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.02622
hsa-miR-548p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
BT483	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.960989
STAT3_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SNU-C1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.861262
ZR-75-30	COSMIC Cell Line Gene CNV Profiles	-1.0	-5.12655
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.46156
primary motor cortex (area M1, area 4)_8 yrs_M_12841	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.31245
PRECLH	CCLE Cell Line Gene Expression Profiles	-1.0	-1.63297
RAX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.5471
Hair follicle inner root sheath	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.564
TUHR10TKB	CCLE Cell Line Gene CNV Profiles	1.0	1.6082
HT-29	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.966992
Hair root	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
MDAMB436	CCLE Cell Line Gene Expression Profiles	-1.0	-2.05497
Hypotrichosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.062
mediodorsal nucleus of thalamus_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.864451
BLOC complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.821
ZNF354A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	107.285
HOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.057
HOXC13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.5473
CEBPB_HepG2_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-AK-3429-01A-02R-1325-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ONECUT1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.7654
ZR751	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33623
hippocampus (hippocampal formation)_9 pcw_M_12833	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.837447
KDM5A	ENCODE Transcription Factor Targets	1.0	null
heparin_homo sapiens_gpl570_gse12710	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
UACC257	CCLE Cell Line Gene Expression Profiles	1.0	2.1966
ventrolateral prefrontal cortex_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.843037
HS870T	CCLE Cell Line Gene Expression Profiles	1.0	1.51033
Sarcoma_SARC_TCGA-DX-A3M2-01A-21R-A22K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Kidney renal papillary cell carcinoma_KIRP_TCGA-A4-A6HP-01A-11R-A31O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
POLR3A_01_139	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	4.37126
ZKSCAN1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.8007
HOXA10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.496
LC1SQSF	CCLE Cell Line Gene Expression Profiles	1.0	1.55312
VMRCLCD	CCLE Cell Line Gene CNV Profiles	-1.0	-1.72328
E2F4	ENCODE Transcription Factor Targets	1.0	null
inferolateral temporal cortex (area TEv, area 20)_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.33976
LY2	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.23264
CREB3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.1996
Whole body	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
F36P	DepMap CRISPR Gene Dependency	1.0	2.94497
cellular_component	GO Cellular Component Annotations 2015	1.0	null
cellular_component	LOCATE Predicted Protein Localization Annotations	1.0	null
integument	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055335
TRIM33_KD_GDS4071_449_human_HMEC-TR mammary epithelial cell line	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
TGIF2LY	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.2097
BCL6B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.5556
DBTRG05MG	CCLE Cell Line Gene CNV Profiles	1.0	1.86071
RBBP5	ENCODE Transcription Factor Targets	1.0	null
MDA-MB-415	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.875833
Keratin filament	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.138
DUXA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.4493
orbital frontal cortex_10 mos_M_12977	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.38311
496100528_FWM_no dementia_no TBI_95-99_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	12.3356
TP63	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.5726
NCI-H2595	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.926356
ATF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.9309
NCI-H187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11707
WIDR	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.966274
primary somatosensory cortex (area S1, areas 3,1,2)_16 pcw_M_12837	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.43404
posterior (caudal) superior temporal cortex (area 22c)_25 pcw_F_12948	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.929722
inferolateral temporal cortex (area TEv, area 20)_8 yrs_M_12841	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.1261
MSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.8878
cerebellar cortex_8 yrs_M_12841	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.75556
PK1	DepMap CRISPR Gene Dependency	1.0	2.04744
POLR2A_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EFM-192B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.875092
PHOX2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.128
HOXC8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.6502
TBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.6013
hsa-miR-4314	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
amygdaloid complex_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.16018
DAOY	CCLE Cell Line Gene Expression Profiles	1.0	1.40813
hsa-miR-3121-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
496100550_TCx_no dementia_TBI_87_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	9.3597
NPHP complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.847
COLO201	DepMap CRISPR Gene Dependency	1.0	2.4178
NCIH1694	CCLE Cell Line Gene CNV Profiles	1.0	2.06513
Prostate adenocarcinoma_PRAD_TCGA-M7-A725-01A-12R-A32O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HUCCT1	CCLE Cell Line Gene Expression Profiles	1.0	1.55398
Hair shaft	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.138
SNU520	CCLE Cell Line Gene Expression Profiles	-1.0	-1.47877
fiber	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.363766
NCI-H1781	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.844509
CHEK1_knockdown_142_GSE31912	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	1.0	1.46381
SNB75	CCLE Cell Line Gene CNV Profiles	1.0	1.3508
NCIH2126	DepMap CRISPR Gene Dependency	1.0	3.17652
PA-TU-8902	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.94274
intracellular	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
NFYC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.6254
Kidney renal papillary cell carcinoma_KIRP_TCGA-B9-4116-01A-02R-1351-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cerebellar cortex_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.857499
organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
hsa-miR-299-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
hsa-miR-3123	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
HCC366	CCLE Cell Line Gene CNV Profiles	-1.0	-2.48601
ZNF184	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.8771
MOLT-4	COSMIC Cell Line Gene Mutation Profiles	1.0	null
non-membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
Brain Lower Grade Glioma_LGG_TCGA-S9-A6TV-01A-12R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
KYSE150	CCLE Cell Line Gene Expression Profiles	-1.0	-2.68959
Brain Lower Grade Glioma_LGG_TCGA-E1-A7YW-01A-11R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
organelle part	GO Cellular Component Annotations 2015	1.0	null
EVX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.5799
U266B1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.78966
H3K9me3_fibroblast of lung_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
EZH2	ENCODE Transcription Factor Targets	1.0	null
DLX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.169
SUM149PT	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.84934
CFPAC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.926356
NEUROG2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.8696
hsa-miR-330-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.13535
amygdaloid complex_37 yrs_M_12303	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.23013
NCIH2141	CCLE Cell Line Gene Expression Profiles	-1.0	-1.77026
LOXIMVI	COSMIC Cell Line Gene Mutation Profiles	1.0	null
OCI-M2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.26293
Hairy cell leukemia cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.826
primary visual cortex (striate cortex, area V1/17)_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.12868
RS411	CCLE Cell Line Gene Expression Profiles	1.0	1.89507
SLU7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.10788
COPS4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.15546
HS 940.T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.33356
Lung squamous cell carcinoma_LUSC_TCGA-43-6647-01A-11R-1820-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
E2F4_MCF 10A_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC1937	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.13616
H3K27me3_SK-N-SH_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hsa-miR-3909	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
AML193	DepMap CRISPR Gene Dependency	1.0	2.27996
3M complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.568
SISO	DepMap CRISPR Gene Dependency	1.0	2.1661
cell part	GO Cellular Component Annotations 2015	1.0	null
TBK1_druginhibition_188_GSE53658	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	-1.0	-1.8266
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00019
GSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.1798
FOXH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.7551
HCC630	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.859896
COGN305	DepMap CRISPR Gene Dependency	1.0	2.47309
TALL1	CCLE Cell Line Gene CNV Profiles	1.0	2.86853
Liver hepatocellular carcinoma_LIHC_TCGA-QA-A7B7-01A-11R-A32O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-2A-A8VL-01A-21R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Pheochromocytoma and Paraganglioma_PCPG_TCGA-WB-A81A-01A-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.0867
TCF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.1257
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051336
IPC298	CCLE Cell Line Gene Expression Profiles	-1.0	-2.18783
intracellular non-membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
ATF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.4589
salivary gland	GTEx Tissue Gene Expression Profiles	1.0	0.830524
hair root	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
COLO320	CCLE Cell Line Gene CNV Profiles	-1.0	-2.27684
Brain Lower Grade Glioma_LGG_TCGA-P5-A72U-01A-31R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
COLO 320DM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.8043
posterior (caudal) superior temporal cortex (area 22c)_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.99093
HOXA4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.3082
PMC12224929-ADVS-12-2416784-s006.xlsx-DEG_circGLIS3_KD-Unnamed_6_AR	Rummagene Transcription Factor Associations 2026	1.0	null
POLR2A	ENCODE Transcription Factor Targets	1.0	null
primary somatosensory cortex (area S1, areas 3,1,2)_4 mos_M_12296	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.24506
DLD1	CCLE Cell Line Gene Expression Profiles	-1.0	-2.63007
Pheochromocytoma and Paraganglioma_PCPG_TCGA-SR-A6MX-05A-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
primary auditory cortex (core)_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.49373
UNCX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.5823
U-2 OS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11707
OE21	COSMIC Cell Line Gene Mutation Profiles	1.0	null
HCC2218	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.09342
LPS853	DepMap CRISPR Gene Dependency	1.0	3.0933
KM-12	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.50742
SIHA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.41255
RT11284	CCLE Cell Line Gene CNV Profiles	1.0	1.41735
Lung adenocarcinoma_LUAD_TCGA-86-8054-01A-11R-2241-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CMK86	CCLE Cell Line Gene Expression Profiles	-1.0	-1.63012
hsa-miR-4646-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
CMK	CCLE Cell Line Gene CNV Profiles	1.0	1.91507
HESX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.6682
CTCF_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
dorsal thalamus_12 pcw_F_12835	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.20103
organelle part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
TT	CCLE Cell Line Gene CNV Profiles	-1.0	-1.49731
Head and Neck squamous cell carcinoma_HNSC_TCGA-HD-A6I0-11A-11R-A31N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MDAMB175VII	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.02792
NCI-H2804	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06588
A-431	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20192
ALX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.658
H3K9me3_HeLa-S3_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
stem	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.297447
CREB3L1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.7927
EPLC272H	CCLE Cell Line Gene Expression Profiles	1.0	1.36886
RPMI-7951	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00671
protein complex	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
HOXB3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.0486
LBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.4952
KP4	DepMap CRISPR Gene Dependency	1.0	2.98288
CHAGOK1	DepMap CRISPR Gene Dependency	1.0	3.17949
HEL9217	CCLE Cell Line Gene CNV Profiles	1.0	2.6683
hair follicle inner root sheath	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.4888
SNU-387	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.94274
NCI-H1792	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09807
NCI-H847	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.988902
KLM1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.11699
posteroventral (inferior) parietal cortex_13 pcw_F_12834	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-2.21213
FOS_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Pheochromocytoma and Paraganglioma_PCPG_TCGA-SR-A6MS-01A-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCI-H2081	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.921419
JVE015	DepMap CRISPR Gene Dependency	1.0	2.11349
3-M syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.612
PHOX2B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.1993
DMS454	CCLE Cell Line Gene Expression Profiles	1.0	1.48734
BHLHA15	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.9322
CCLP1	DepMap CRISPR Gene Dependency	1.0	2.24832
PL45	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34285
ARGFX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.0675
ZNF143	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.0331
POU3F4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.213
FOXC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.7715
YY1	MotifMap Predicted Transcription Factor Targets	1.0	null
animal	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
hair follicle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.851686
PE01	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.15773
BATF::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.5478
hsa-miR-576-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
hsa-miR-377	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
amygdaloid complex_21 pcw_M_12886	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.54248
HEP3B217	CCLE Cell Line Gene Expression Profiles	1.0	1.65248
KMS18	DepMap CRISPR Gene Dependency	1.0	3.1174
Liver hepatocellular carcinoma_LIHC_TCGA-G3-AAV6-01A-21R-A37K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
KLM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.94274
CREB1_01_195	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	-1.0	-0.60226
SOX8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.3904
NCIH2342	CCLE Cell Line Gene Expression Profiles	-1.0	-1.46495
EZH2_keratinocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.8092
RT112	CCLE Cell Line Gene CNV Profiles	1.0	1.78134
GR-M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.5721
MOLP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00019
KYO1	CCLE Cell Line Gene CNV Profiles	1.0	1.64518
NCI-H2172	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Sarcoma_SARC_TCGA-DX-A7EU-01A-22R-A36F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BATF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.4505
posterior (caudal) superior temporal cortex (area 22c)_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	3.4231
hsa-miR-7	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
hippocampus (hippocampal formation)_3 yrs_F_12836	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.30885
FOXB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	47.3903
CEBPB_A549_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
striatum_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-2.19991
CMK115	CCLE Cell Line Gene CNV Profiles	1.0	2.23521
FOS	ENCODE Transcription Factor Targets	1.0	null
H3K27me3_SK-N-SH_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ESX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.5679
LHX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.9887
SKMEL2	CCLE Cell Line Gene Expression Profiles	-1.0	-1.8952
FOXD2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	82.4431
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4351-01A-01R-1289-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
OVKATE	CCLE Cell Line Gene CNV Profiles	-1.0	-1.55076
U-2932	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.5309
primary visual cortex (striate cortex, area V1/17)_21 pcw_F_12365	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.26563
NCI-H1341	COSMIC Cell Line Gene Mutation Profiles	1.0	null
H3K9me3_osteoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
mpkCCD cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.36
P31FUJ	DepMap CRISPR Gene Dependency	1.0	3.35516
FOXL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.6659
LS180	DepMap CRISPR Gene Dependency	1.0	2.50539
HEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.19301
NCIH2106	CCLE Cell Line Gene CNV Profiles	1.0	1.7416
MEF2B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.0562
dorsolateral prefrontal cortex_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.927256
CL14	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33028
Alopecia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.073
nod2_21335489_hek293_lof_human_gpl570_gds4416	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	-1.0	-0.46651
BHLHE22	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.0389
PBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.5
OVKATE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.50742
HOXB6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.1127
hippocampus (hippocampal formation)_37 yrs_M_12303	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.01107
dexamethasone_homo sapiens_gpl4133_gse42619	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-HT-7856-01A-11R-2403-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CHD1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HMEL	CCLE Cell Line Gene Expression Profiles	1.0	1.99308
anterior (rostral) cingulate (medial prefrontal) cortex_16 pcw_M_12287	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.920097
ST486	CCLE Cell Line Gene Expression Profiles	1.0	1.87008
EVX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.7754
Liver hepatocellular carcinoma_LIHC_TCGA-BC-A110-01A-11R-A131-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Collecting duct cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.018
H3K9me3_A549_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
LO68	DepMap CRISPR Gene Dependency	1.0	2.10035
MEIS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.0469
ECC2	DepMap CRISPR Gene Dependency	1.0	2.03165
GSE158458_2_v_3_sorafenib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
MEF2D	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.7611
ZR-75-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.11156
DMRTC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.8837
cellular_component	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
Sarcoma_SARC_TCGA-QQ-A5VD-01A-21R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCIH1666	DepMap CRISPR Gene Dependency	1.0	2.85957
NOL11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	5.9248
NUGC4	CCLE Cell Line Gene Expression Profiles	1.0	2.49735
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-G3-A7M9-01A-23R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hair	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.190702
TTC642	DepMap CRISPR Gene Dependency	1.0	2.38945
NR1D2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.9181
A172	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.4638
FOS_MCF 10A_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
striatum_37 yrs_M_12303	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.965093
Liver hepatocellular carcinoma_LIHC_TCGA-RG-A7D4-01A-12R-A33R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Colon - Sigmoid	GTEx Tissue Gene Expression Profiles 2023	1.0	7.21239
NCI-H446	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.927391
OLIG2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.1325
primary motor cortex (area M1, area 4)_37 yrs_M_12303	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-2.31329
Kidney renal papillary cell carcinoma_KIRP_TCGA-IA-A83W-01A-11R-A355-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
icSARA deltaORF6_0Hour_23365422_GSE33267	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.77352
PROP1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.3444
CEBPB_IMR-90_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19548
hsa-miR-338-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
HS683	CCLE Cell Line Gene Expression Profiles	-1.0	-2.78656
TP53	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.4823
MDA-MB-330	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.25985
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-HG-A2PA-01A-11R-A213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-98-8022-01A-11R-2247-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCI-H1373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0203
Ciliary base	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.775
PDX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.1395
PA-TU-8988S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06588
Hair disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.022
PATU8902	CCLE Cell Line Gene CNV Profiles	-1.0	-1.58768
MERO83	DepMap CRISPR Gene Dependency	1.0	2.23913
MDAMB435S	DepMap CRISPR Gene Dependency	1.0	3.83082
fallopian tube	GTEx Tissue Gene Expression Profiles	-1.0	-1.17497
Keratin-associated protein, type6/8/16/19/20	InterPro Predicted Protein Domain Annotations	1.0	null
PDCD11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.36035
epidermal cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.347408
HOXB2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.3936
CHP212	DepMap CRISPR Gene Dependency	1.0	2.58073
HOXA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.9176
UCSD-242L	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.921419
MOGGCCM	CCLE Cell Line Gene CNV Profiles	1.0	1.3559
KM12	CCLE Cell Line Gene CNV Profiles	-1.0	-1.64707
Sarcoma_SARC_TCGA-QC-A6FX-01A-11R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MAFF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.5057
MIXL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.5873
TRAPP complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.832
hsa-miR-19b	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
YMB-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.11083
LIM1215	COSMIC Cell Line Gene Mutation Profiles	1.0	null
ICC9	DepMap CRISPR Gene Dependency	1.0	2.98305
EM-2	COSMIC Cell Line Gene Mutation Profiles	1.0	null
SOX21	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.8683
OLIG1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.0663
Pheochromocytoma and Paraganglioma_PCPG_TCGA-QR-A6H2-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BLCAP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.8817
FOSL2::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.3583
PMC8586238-41467_2021_26788_MOESM6_ESM.xlsx-S2A_CDE_genes-S2A_CDE_-_genes_of_the_two_CCD_genes_RUNX2	Rummagene Transcription Factor Associations 2026	1.0	null
BLOC-1 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.921
HSC3	CCLE Cell Line Gene Expression Profiles	1.0	2.34072
Uterine Carcinosarcoma_UCS_TCGA-N5-A4RA-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ABL1_knockdown_144_GSE31912	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	-1.0	-1.375
FOSL2::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.0909
REH	COSMIC Cell Line Gene Mutation Profiles	1.0	null
etanercept_homo sapiens_gpl570_gse41663	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
JHOS2	CCLE Cell Line Gene Expression Profiles	-1.0	-1.55782
NEUROG1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.2823
STAT3	ENCODE Transcription Factor Targets	1.0	null
U2OS	CCLE Cell Line Gene CNV Profiles	1.0	1.45167
hippocampus (hippocampal formation)_23 yrs_M_12300	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.930489
H3K9me3_G1E_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
HOXA7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	12.9209
EMX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.0992
PROX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.2172
LMX1A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.0808
hsa-miR-3976	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
posterior (caudal) superior temporal cortex (area 22c)_16 pcw_M_12287	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.43369
ZR7530	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.08297
FOS_MCF 10A_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NTERA-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.89062
COV362	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20192
T47D	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	2.0759
HCC1493	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.76304
muscle	GTEx Tissue Gene Expression Profiles	1.0	1.22687
Skin Cutaneous Melanoma_SKCM_TCGA-FS-A1ZR-06A-21R-A18U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cytoskeletal part	GO Cellular Component Annotations 2015	1.0	null
hsa-miR-4289	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
NCI-N417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.97409
PMC8481886-Table_2.xlsx-A_subsets-AF_MSC_UdRPC_MSC	Rummagene Transcription Factor Associations 2026	1.0	null
PMC12454715-13555_2025_1471_MOESM1_ESM.pdf-89-LEF1_LEF1	Rummagene Transcription Factor Associations 2026	1.0	null
CJM	CCLE Cell Line Gene Expression Profiles	-1.0	-1.90409
Intraciliary transport particle B	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.777
POU2F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.1332
MSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.6565
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051335
HOXB5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.0424
MHH-PREB-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.78966
protein complex	GO Cellular Component Annotations 2015	1.0	null
NCI-H2198	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.861262
NCI-H2052	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.46156
HCC1569	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.1594
skin	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.08622