association dataset threshold value standardized value Brain Lower Grade Glioma_LGG_TCGA-HW-8319-01A-11R-2404-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null VIIAf Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.70811 hsa-miR-548am TargetScan Predicted Nonconserved microRNA Targets 1.0 1.55165 COV362 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.32819 RMG-I Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.961821 Foxf1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 89.8185 SARM_KO_GDS4842_411_mouse_brain GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null Mafb JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 130.111 COV504 CCLE Cell Line Gene CNV Profiles -1.0 -1.35079 496100367_FWM_no dementia_TBI_78_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 3.68243 Brain Lower Grade Glioma_LGG_TCGA-E1-A7YW-01A-11R-A34R-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null HOXD9 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 31.7243 HCC202 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.911011 Plagl1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 150.805 SOX18 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 16.9031 COLO678 CCLE Cell Line Gene CNV Profiles 1.0 1.79065 IZ in lateral temporal-occipital cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.10034 OVCA 420 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.27567 Skin Cutaneous Melanoma_SKCM_TCGA-EE-A29G-06A-12R-A18T-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null protein complex COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.03318 FFAR4_KO_GDS4811_507_mouse_adipose GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null Cystadenofibroma DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.374 BLOC-1 complex COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.767 PAX3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 34.6507 M059K Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.854867 Dlx5 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 66.4847 intracellular COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.03318 CTCF_DEPLETION_GDS3294_97_mouse_germinal vesicle (GV) oocytes GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null Nfatc1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 161.105 CEBPB JASPAR Predicted Human Transcription Factor Targets 2025 1.0 21.4084 FUOV1 CCLE Cell Line Gene CNV Profiles 1.0 1.3421 Whole body TISSUES Curated Tissue Protein Expression Evidence Scores 2025 1.0 4.0 Intraciliary transport particle A COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.575 Kidney Chromophobe_KICH_TCGA-KM-8440-01A-11R-2315-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Rxra JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 123.903 BICR 31 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.833044 Keratin filament COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 1.23 DMRTA2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 19.1417 hsa-miR-4273 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.843347 MOLT13 CCLE Cell Line Gene Expression Profiles 1.0 1.50295 DMRTC2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 21.1553 184A1N4 Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles 1.0 1.06502 HCC1263 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.2056 SNU840 DepMap CRISPR Gene Dependency 1.0 2.10594 FOXP2_SK-N-MC_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null MYCN JASPAR Predicted Human Transcription Factor Targets 2025 1.0 33.7792 Dlx4 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 97.9107 interstitial nucleus of Cajal, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.931192 intracellular organelle part GO Cellular Component Annotations 2015 1.0 null HEC-1-A Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.00241 ATM_KD_GSE54268_663_human_MCF-10A GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null Omegae TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.226 SK-BR-3 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 3.19301 tail of caudate nucleus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.07941 A704 COSMIC Cell Line Gene Mutation Profiles 1.0 null intracellular organelle COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.03318 CA2 field, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.926703 MHHES1 CCLE Cell Line Gene CNV Profiles -1.0 -2.05378 DMS-273 COSMIC Cell Line Gene Mutation Profiles 1.0 null Nkx3-2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 38.833 Zfx JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 203.979 cytoskeletal part COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.03318 Ppara JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 93.6481 principal sensory nucleus of trigeminal nerve, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.914875 VZ in hypothalamic portion Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.30283 SRY ChEA Transcription Factor Targets 1.0 null medial subdivision of central nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.972537 Prostate adenocarcinoma_PRAD_TCGA-VP-A87C-01A-11R-A352-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null intracellular part GO Cellular Component Annotations 2015 1.0 null LCLC-97TM1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.14511 Kidney renal clear cell carcinoma_KIRC_TCGA-AK-3455-01A-01R-0864-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Lung adenocarcinoma_LUAD_TCGA-91-6835-11A-01R-1858-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null CFPAC-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.90871 Npas4 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 15.9333 A673 CCLE Cell Line Gene CNV Profiles -1.0 -1.92948 frontal pole, left, medial aspect Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -2.20093 Hmx1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 51.3055 Cuticle TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.142 cellular_component COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.03318 PANC1005 CCLE Cell Line Gene CNV Profiles 1.0 1.85737 Lef1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 149.782 Stat2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 205.003 Autosomal dominant woolly hair DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.835 COA4 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.55386 POU4F1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 35.6042 REST JASPAR Predicted Human Transcription Factor Targets 2025 1.0 212.843 496100421_PCx_probable Alzheimer's disease_TBI_88_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 5.40625 496100466_PCx_probable Alzheimer's disease_no TBI_89_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 3.08771 SZ in midcingulate cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.70676 mRNA_WHSC2_19796622 ESCAPE Omics Signatures of Genes and Proteins for Stem Cells -1.0 null CDX4 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 26.2596 intracellular organelle part COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.03318 NANOG-19829295-ESCS-HUMAN ChEA Transcription Factor Targets 2022 1.0 null Rarb JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 165.4 choroid plexus of the fourth ventricle Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.88046 H3K9me3_erythroblast_mm9_2 ENCODE Histone Modification Site Profiles 1.0 null VAX1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 14.1151 SNUC1 CCLE Cell Line Gene Expression Profiles 1.0 1.94043 Elf5 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 116.064 NCI-H2795 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.55454 Nfat5 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 222.654 inner CP in ventromedial extrastriate cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.22239 EFM-19 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 2.44736 paracentral lobule, anterior part, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.834573 plant form TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.645695 POLR2AphosphoS5_SK-N-MC_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null I-II Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.14883 Rapidly involuting congenital hemangioma DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.492 MJ DepMap CRISPR Gene Dependency 1.0 2.20311 motor nucleus of trigeminal nerve, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.7143 Kidney renal clear cell carcinoma_KIRC_TCGA-CJ-4640-01A-02R-1325-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null tissues, cell types and enzyme sources TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null integument TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null COLO 699 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.08204 NIH:OVCAR-3 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.28749 Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-FU-A3HZ-01A-11R-A213-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null temporal pole, right, medial aspect Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.43778 15735024-SuppTable2 GeneSigDB Published Gene Signatures 1.0 null FEV JASPAR Predicted Human Transcription Factor Targets 2025 1.0 20.0152 hsa-miR-4311 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.13535 SCRT1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 128.214 MFM-223 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.27789 NCIH1693 CCLE Cell Line Gene Expression Profiles 1.0 3.40774 Zbtb2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 38.739 Ciliary pocket collar COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.734 NCI-H1299 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.911011 Hmx3 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 68.0982 Keratinization Reactome Pathways 2024 1.0 null PL45 CCLE Cell Line Gene CNV Profiles 1.0 1.9456 hsa-miR-3942-3p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.07142 Get-1_Deficiency_GDS2629_161_mouse_embryonic skin GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null TC32 CCLE Cell Line Gene Expression Profiles 1.0 1.57266 VIIB, right, paravermis Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.25051 Skin TISSUES Curated Tissue Protein Expression Evidence Scores 2025 1.0 4.0 Lung adenocarcinoma_LUAD_TCGA-NJ-A55A-01A-11R-A262-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Kidney renal clear cell carcinoma_KIRC_TCGA-B0-4691-01A-01R-1277-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null HCC1500 Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles -1.0 -0.579249 layer VI of area 35c Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.40684 layer I of caudal entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.30184 SU-DHL-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.36816 ETV1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 45.3647 whole body TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null Rfx6 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 119.866 PMC8656035-40001_2021_613_MOESM2_ESM.docx-34-FOXN1_FOXN1 Rummagene Transcription Factor Associations 2026 1.0 null UMUC16 DepMap CRISPR Gene Dependency 1.0 2.03378 developmental process GO Biological Process Annotations 2015 1.0 null FOXO1::ELK3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 79.0804 outer SZ in dorsomedial extrastriate cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.10275 GSE146687_2_v_5_eribulin_human RummaGEO Drug Perturbation Signatures 1.0 null Sox6 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 167.851 SKNMC CCLE Cell Line Gene Expression Profiles 1.0 1.50062 P3HR1 CCLE Cell Line Gene Expression Profiles 1.0 2.5747 CEBPB ENCODE Transcription Factor Targets 1.0 null Brain Lower Grade Glioma_LGG_TCGA-HT-7477-01B-11R-A28M-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null SKES1 CCLE Cell Line Gene CNV Profiles -1.0 -2.3685 Pparg::Rxra JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 102.478 PANC 05.04 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.982726 outer SZ in ventromedial extrastriate cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.994035 TYK-NU.CP-R Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -2.28187 Hair root TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.938 COLO 678 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.68729 CHK1_KD_GSE54267_671_human_U2OS GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null SP in dorsomedial frontal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.2652 Foxl2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 201.479 SUM102PT Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles 1.0 1.15074 Feather TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.798 ETV5::FOXI1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 50.8681 COLO 680N Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.37771 FOXO1::ELF1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 82.3369 ATM_KD_GSE54268_661_human_MCF-10A GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null CTNNB1_OE_GDS4449_352_mouse_Embryonic kidney from E12.5 embryos (-catGOF-UB mutant) GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null Zfp961 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 591.641 NCI-H2198 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.03774 Tcf21 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 1594.79 ETS1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 18.7663 TCF7L2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 18.9131 H3K9me3_skeletal muscle myoblast_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null Lung adenocarcinoma_LUAD_TCGA-44-7667-01A-31R-2066-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-VS-A8EK-01A-12R-A37O-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Prostate adenocarcinoma_PRAD_TCGA-KK-A8I5-01A-11R-A36G-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null POLR2A_A549_hg19_5 ENCODE Transcription Factor Binding Site Profiles 1.0 null Kidney renal clear cell carcinoma_KIRC_TCGA-A3-3365-01A-01R-0864-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null HCC515 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.911011 HCC1428 CCLE Cell Line Gene CNV Profiles -1.0 -1.44713 LN215 CCLE Cell Line Gene Expression Profiles -1.0 -1.74257 caudal group of intralaminar nuclei, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.2285 dentate gyrus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.30721 JIMT1 CCLE Cell Line Gene CNV Profiles -1.0 -2.66441 Prdm14 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 23.2735 Tricellular tight junction COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 1.061 inner CP in primary somatosensory cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.48625 Foxj2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 113.289 SNU349 CCLE Cell Line Gene Expression Profiles -1.0 -1.92485 organelle part COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.03318 hsa-miR-548aj TargetScan Predicted Nonconserved microRNA Targets 1.0 1.55165 BT20 Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles 1.0 0.902575 ASCL1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 196.669 ETV4 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 18.0071 496100418_TCx_no dementia_TBI_85_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 7.65926 Pheochromocytoma and Paraganglioma_PCPG_TCGA-SR-A6MT-01A-11R-A35L-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Hoxa13 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 100.947 SOX2-19829295-ESCS-HUMAN ChEA Transcription Factor Targets 2022 1.0 null Dux JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 68.9755 intermediate filament GO Cellular Component Annotations 2015 1.0 null hsa-miR-3140-3p TargetScan Predicted Conserved microRNA Targets 1.0 1.45615 Kidney renal clear cell carcinoma_KIRC_TCGA-CJ-4882-01A-02R-1426-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null OVCA 432 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.847878 MYC ENCODE Transcription Factor Targets 1.0 null polymorphic layer of rostral subiculum Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.62133 SP in entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.02622 IZ in caudal midinferior temporal cortex (area TF) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.35715 FOXC1 JASPAR Predicted Transcription Factor Targets 1.0 null TCF12_GM12878_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null HCC2218 Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles -1.0 -0.685231 Isl1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 81.0325 CAPAN-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.46508 HCT-15 COSMIC Cell Line Gene Mutation Profiles 1.0 null Nanog JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 21.5818 gyrus rectus, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.0131 MAX JASPAR Predicted Human Transcription Factor Targets 2025 1.0 14.801 SNU1077 CCLE Cell Line Gene Expression Profiles -1.0 -1.75791 A-Vietnam-1203_CIP048_RG3-2004(H5N1)mutPB1-F2del_0Hour_None_GSE43203 GEO Signatures of Differentially Expressed Genes for Viral Infections -1.0 -2.45201 TCF3_myocyte_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null MDA-MB-453 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.83464 ZNF341 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 22.9926 TCCSUP CCLE Cell Line Gene Expression Profiles -1.0 -1.58472 outer CP in posterior parahippocampal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.9645 anterior orbital gyrus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.918902 Retinitis pigmentosa 11 DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.016 Msgn1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 273.461 496100458_FWM_no dementia_no TBI_88_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.13487 NCIH2029 CCLE Cell Line Gene Expression Profiles 1.0 1.53498 interstitial nucleus of Cajal, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.70294 POLR2A ENCODE Transcription Factor Targets 1.0 null MYOG JASPAR Predicted Human Transcription Factor Targets 2025 1.0 178.393 EZH2 ENCODE Transcription Factor Targets 1.0 null NCI-H596 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.990684 Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4992-01A-01R-1334-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Lung adenocarcinoma_LUAD_TCGA-55-8097-01A-11R-2241-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Nr1h3 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 46.3014 Crus II, right, lateral hemisphere Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.903116 HCC1143 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.44744 Hair shaft TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.151 CTNNB_Activation (deltaNB-cateninER transgenics)_GDS1560_767_mouse_Skin - 1 Day GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null ST486 CCLE Cell Line Gene Expression Profiles 1.0 1.53103 ZNF85 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 30.8664 JEKO-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.36944 skin GTEx Tissue Gene Expression Profiles 1.0 2.18987 KELLY Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.33069 lateral hypothalamic area, anterior region, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.75127 TE-4 COSMIC Cell Line Gene Mutation Profiles 1.0 null central nucleus of inferior colliculus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.962843 GID complex COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.855 496100420_PCx_probable Alzheimer's disease_no TBI_85_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 5.69967 dexamethasone_homo sapiens_gpl6244_gse20963 GEO Signatures of Differentially Expressed Genes for Small Molecules 1.0 null TBCD CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.15795 TAL1::TCF3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 133.682 Dmrt1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 62.0621 Acute Myeloid Leukemia_LAML_TCGA-AB-2998-03A-01T-0735-13 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null JUNB JASPAR Predicted Human Transcription Factor Targets 2025 1.0 22.4281 H3K27me3_CH12.LX_mm9_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-GS-A9TV-01A-11R-A38C-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null MDA-MB-361 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -2.68445 Hand1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 44.0678 MYOG ENCODE Transcription Factor Targets 1.0 null Ebf4 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 102.486 Mecom JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 156.296 POLR2AphosphoS5_G1E_mm9_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null EWSR1-FLI1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 142.886 CSTB_KO_GDS5089_565_mouse_cerebellum and granule neurons GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null POU3F3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 29.3403 limitans nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.979276 496100391_FWM_no dementia_TBI_78_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.1708 NCIH211 CCLE Cell Line Gene CNV Profiles 1.0 1.36008 Collecting duct cell line TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.792 ELK3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 19.2887 Arid5a JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 60.8822 SUPT1 CCLE Cell Line Gene Expression Profiles 1.0 1.9484 HCC1419 Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles -1.0 -1.42457 496100409_FWM_no dementia_TBI_85_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.07917 Arnt JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 15.65 TAF7L_KO_GDS2857_556_mouse_ES cells GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null POLR2AphosphoS5_G1E_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Erg JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 418.251 superficial layers of caudal presubiculum Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.52819 BHLHE22 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 96.5669 VI, right, paravermis Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.953559 HCC1897 CCLE Cell Line Gene CNV Profiles -1.0 -1.4603 CTCF_T-cell acute lymphoblastic leukemia_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null H2AFZ ENCODE Transcription Factor Targets 1.0 null TRIB1_KO_GDS2944_555_mouse_Macrophages GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null mRNA_NR0B1_19796622 ESCAPE Omics Signatures of Genes and Proteins for Stem Cells 1.0 null mRNA_SOX9_19796622 ESCAPE Omics Signatures of Genes and Proteins for Stem Cells -1.0 null Sox17 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 59.5038 HCC70 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.01663 Pou5f1::Sox2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 145.684 ELF2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 39.3011 SRY-25088423-EMBRYONIC GONADS-MOUSE ChEA Transcription Factor Binding Site Profiles 1.0 null UMUC7 DepMap CRISPR Gene Dependency 1.0 2.12513 CTCF JASPAR Predicted Human Transcription Factor Targets 2025 1.0 208.802 Brain Lower Grade Glioma_LGG_TCGA-HT-A74K-01A-11R-A32Q-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null NCIN87 CCLE Cell Line Gene CNV Profiles 1.0 2.36415 SNAI1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 48.3169 precommissural nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.28712 OKAJIMA Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.07016 AU565 COSMIC Cell Line Gene CNV Profiles 1.0 2.76305 callosal sling Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.12833 ELK1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 19.5891 Spi1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 116.726 MYOG_myocyte_mm9_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null Nfatc2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 173.421 ZR75B Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles -1.0 -1.07998 COR-L88 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.24594 RMGI DepMap CRISPR Gene Dependency 1.0 2.40488 TWIST1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 24.8029 inferior occipital gyrus, right, inferior bank of gyrus Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.22205 Foot muscle TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.938 Gli1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 60.2668 E2F4 ENCODE Transcription Factor Targets 1.0 null HUPT3 CCLE Cell Line Gene CNV Profiles 1.0 1.48924 H3K9me3_erythroblast_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null layer II of area 35c Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.59461 Olig2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 872.107 LHX6 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 16.7405 dorsal motor nucleus of the vagus (vagal nucleus) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.969146 ATR_KD_GSE54268_664_human_MCF-10A GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null A549 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.1873 ZNF317 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 62.2498 496100459_PCx_no dementia_no TBI_89_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.35003 cellular_component GO Cellular Component Annotations 2015 1.0 null Twist2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 864.656 subcuneiform nucleus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.22981 TC71 CCLE Cell Line Gene CNV Profiles -1.0 -1.58246 NB17 COSMIC Cell Line Gene Mutation Profiles 1.0 null single-organism developmental process GO Biological Process Annotations 2015 1.0 null SHSY5Y DepMap CRISPR Gene Dependency 1.0 2.26855 Six3 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 42.3149 cuneate nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.00681 NCI-H920 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.968316 ZNF93 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 431.405 Perturb_4985_KO_Ythdc1_SRP212677 PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations 1.0 1.83525 Pancreatic adenocarcinoma_PAAD_TCGA-IB-AAUP-01A-11R-A37L-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null outer CP in inferolateral temporal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.64798 Zfp335 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 75.9524 RL CCLE Cell Line Gene Expression Profiles 1.0 1.81211 LS-180 COSMIC Cell Line Gene Mutation Profiles 1.0 null hsa-miR-3915 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.7397 Creb5 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 50.3134 Prostate adenocarcinoma_PRAD_TCGA-KK-A6E5-01A-11R-A311-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Cornified envelope COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 1.128 E2F4_MCF 10A_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null organelle COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.03318 Smad4 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 99.893 JHESOAD1 CCLE Cell Line Gene CNV Profiles 1.0 1.75626 POU4F3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 35.7423 SUDHL1 CCLE Cell Line Gene CNV Profiles 1.0 2.10336 SCC-4 COSMIC Cell Line Gene Mutation Profiles 1.0 null mpkCCD cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.134 hsa-miR-3123 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.55165 Stat5a JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 92.1314 SU-DHL-16 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.07117 tissues, cell types and enzyme sources TISSUES Curated Tissue Protein Expression Evidence Scores 2025 1.0 4.0 Gli2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 58.1565 paravermis of cerebellum Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.903523 MYC_MCF-7_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null hsa-miR-140-3p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.99187 superior colliculus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.08327 CDX1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 27.1876 MAF JASPAR Predicted Human Transcription Factor Targets 2025 1.0 137.263 Paraganglioma DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.136 MUS81 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 4.13617 SNU626 CCLE Cell Line Gene Expression Profiles -1.0 -1.65147 CIRBP CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 4.18925 EN1 JASPAR Predicted Transcription Factor Targets 1.0 null EZH2_myotube_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CDX2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 28.9503 59M CCLE Cell Line Gene Expression Profiles -1.0 -1.46904 glis3_19805515_embryonic_pancreas_lof_mouse_gpl1261_gds3812 GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations -1.0 -0.678782 mRNA_RXRA_19796622 ESCAPE Omics Signatures of Genes and Proteins for Stem Cells -1.0 null Lhx8 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 79.1201 Hand1::Tcf3 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 428.31 outer SZ in dorsolateral prefrontal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 2.10735 CSTB_KO_GDS5089_486_mouse_Cerebellum and granule neurons GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null Prdm15 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 172.936 NCI-N87 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 2.21966 Autosomal recessive congenital ichthyosis 11 DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.066 XBP1_OE_GDS5065_273_mouse_F424a adipocytes GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null COV504 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.2056 MYF5 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 108.299 ZNF229 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.4337 IZ in caudal cingulate cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.08837 H3K4me1_H1 Derived Mesenchymal Stem Cells Roadmap Epigenomics Histone Modification Site Profiles 1.0 null CEBPD JASPAR Predicted Human Transcription Factor Targets 2025 1.0 18.4514 subcallosal cingulate gyrus, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.994936 MDA-MB-468 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.847217 Pancreatic adenocarcinoma_PAAD_TCGA-IB-A5SQ-01A-11R-A32O-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Stat5a::Stat5b JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 77.289 ETV2::FOXI1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 48.3969 SG in midlateral temporal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.25325 LOVO DepMap CRISPR Gene Dependency 1.0 2.18368 DOR 13 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.56377 NHLH2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 121.194 496100416_FWM_dementia_TBI_90-94_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 4.36041 KP-3 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.847217 PROP1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 28.9749 NFIL3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 18.3531 Ciliary base COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.621 Brain Lower Grade Glioma_LGG_TCGA-TM-A84I-01A-11R-A36H-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null CAL72 DepMap CRISPR Gene Dependency 1.0 2.10141 MBD2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 4.37547 Alx4 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 127.81 FLI1::DRGX JASPAR Predicted Human Transcription Factor Targets 2025 1.0 15.7771 TCF4 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 83.7804 CORL279 CCLE Cell Line Gene Expression Profiles -1.0 -1.89111 ERF::NHLH1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 149.341 CSTB_KO_GDS5089_169_mouse_Cerebrellum GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null inferior frontal gyrus, orbital part, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.866099 outer CP in caudal cingulate cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.06442 ZNF547 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 58.7346 NPHP complex COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.692 Lhx3 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 218.1 non-membrane-bounded organelle COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.03318 NCIH2452 CCLE Cell Line Gene CNV Profiles 1.0 1.40351 ETV5::FIGLA JASPAR Predicted Human Transcription Factor Targets 2025 1.0 168.109 hsa-miR-4491 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.07142 central part of CEl Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.16945 inner CP in caudal perirhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.848191 intermediate filament COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.03318 Jun JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 58.9972 outer plexiform zone in extrastriate cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.38101 Foxj3 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 173.615 ETV3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 18.3594 OVCAR4 CCLE Cell Line Gene Expression Profiles -1.0 -1.90813 UACC812 Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles -1.0 -0.950179 Dlx3 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 96.0615 NUGC-4 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.45586 ETS2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 18.0987 Brain Lower Grade Glioma_LGG_TCGA-FG-A6J1-01A-11R-A31N-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null LCLC97TM1 DepMap CRISPR Gene Dependency 1.0 2.02237 Runx1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 157.801 VZ in midcingulate neocortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.872367 A-Netherlands-602-2009(H1N1)_18Hour_None_GSE40844 GEO Signatures of Differentially Expressed Genes for Viral Infections 1.0 1.44422 Sox11 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 64.9365 COLO-783 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.847217 3-M syndrome DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.132 Foxo3 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 115.556 VIIIB, left, lateral hemisphere Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.916257 TCF12 ENCODE Transcription Factor Targets 1.0 null HCC3153 Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles 1.0 1.32282 H3K27me3_cardiac mesoderm_hg19_8 ENCODE Transcription Factor Binding Site Profiles 1.0 null Nkx3-1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 27.6511 central nuclear group Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.898888 HCC1011 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.991308 lateral hemisphere of cerebellum Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.942156 keratin filament GO Cellular Component Annotations 2015 1.0 null Atf3 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 71.5129 Tbx6 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 84.5782 hsa-miR-3692 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.843347 NCIH522 CCLE Cell Line Gene CNV Profiles 1.0 1.55341 YY1 MotifMap Predicted Transcription Factor Targets 1.0 null ZNF175 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 38.6111 VIIIB Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.02501 em2 TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.522 OVCAR-4 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.86906 L33 DepMap CRISPR Gene Dependency 1.0 2.02716 hsa-miR-550a TargetScan Predicted Nonconserved microRNA Targets 1.0 1.99187 SNU216 DepMap CRISPR Gene Dependency 1.0 2.1054 IZ in orbital frontal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.876773 adipose tissue GTEx Tissue Gene Expression Profiles 1.0 0.937843 Brain Lower Grade Glioma_LGG_TCGA-S9-A6U6-01A-12R-A33Z-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Vdr JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 63.6862 stratum pyramidale of rostral CA2 Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.11344 FOXO1::FLI1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 65.6083 cell part GO Cellular Component Annotations 2015 1.0 null COLO 792 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.908037 Sarcoma_SARC_TCGA-QQ-A5VD-01A-21R-A32Q-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Pancreatic adenocarcinoma_PAAD_TCGA-Q3-A5QY-01A-12R-A32O-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null FLI1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 19.5461 GSE111061_1_v_0_tofacitinib_human RummaGEO Drug Perturbation Signatures -1.0 null ZNF75D JASPAR Predicted Human Transcription Factor Targets 2025 1.0 23.1777 Thap11 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 58.6227 cingulate gyrus, retrosplenial part, left, inferior bank of gyrus Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.37547 ERF::FOXO1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 57.267 CSTB_KO_GDS5090_198_mouse_Cerebellum GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null Arnt::Hif1a JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 14.2212 PFEIFFER Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.00011 Shox2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 104.702 VI Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.07166 ctnnb1_19652203_myeloma_lof_human_gpl570_gds3578 GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations 1.0 0.365897 TYK2_KD_GDS4754_158_human_JURKAT GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null preoptic region, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 2.00687 Lhx4 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 59.1949 outer SZ in dorsomedial frontal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.17843 H3K9me3_G1E_mm9_2 ENCODE Histone Modification Site Profiles 1.0 null single-multicellular organism process GO Biological Process Annotations 2015 1.0 null CEBPA JASPAR Predicted Human Transcription Factor Targets 2025 1.0 21.0111 plant TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.381379 raphe obscurus nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.26269 RH28 DepMap CRISPR Gene Dependency 1.0 2.18394 DCTN3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.02584 hsa-miR-4427 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.40969 Hmga1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 171.692 MDA-MB-436 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.27789 Kidney renal papillary cell carcinoma_KIRP_TCGA-SX-A7SO-01A-11R-A355-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null head and face region of M1 Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.833192 SG in primary somatosensory cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.25283 HCC1171 CCLE Cell Line Gene CNV Profiles 1.0 1.46857 inner SZ in dorsomedial frontal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 2.59805 c-MYC_KD_GDS2526_110_human_BT-474 BREAST CANCER cell line GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null cytoskeleton COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.03318 JHOC5 DepMap CRISPR Gene Dependency 1.0 2.09992 LPS6 DepMap CRISPR Gene Dependency 1.0 2.45879 POLR2A_H54_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CEBPB_A549_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null Hoxd13 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 93.8252 Hnf1a JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 155.729 H3K27me3_Breast vHMEC Roadmap Epigenomics Histone Modification Site Profiles 1.0 null HT1376 DepMap CRISPR Gene Dependency 1.0 2.02369 Yy1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 129.332 Nrf1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 110.742 YD10B CCLE Cell Line Gene Expression Profiles -1.0 -2.36579 LAMA2_Deficiency_GDS3371_595_mouse_Hind limb skeletal muscle (4-week old dy3K/dy3K animals) GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null FERD3L JASPAR Predicted Human Transcription Factor Targets 2025 1.0 161.339 H3K27me3_H7_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CCRF-CEM COSMIC Cell Line Gene Mutation Profiles 1.0 null HAND2-30127528-KELLY-HUMAN-BRAIN-NEUROBLASTOMA ChEA Transcription Factor Targets 2022 1.0 null ETV5 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 19.5831 Prostate adenocarcinoma_PRAD_TCGA-EJ-7318-01B-11R-A32O-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null OVCAR433 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.95149 Esrrg JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 148.546 keratin filament COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.03318 Brain Lower Grade Glioma_LGG_TCGA-FN-7833-01A-11R-2090-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null HL60 CCLE Cell Line Gene Expression Profiles 1.0 1.87517 frontal pole, right, inferior aspect Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -2.4344 scalp TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null globose nucleus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.978765 SK-MEL-2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.14621 Integument TISSUES Curated Tissue Protein Expression Evidence Scores 2025 1.0 4.0 caudal portion of VFC (area 44) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.981034 CFPAC1 CCLE Cell Line Gene CNV Profiles 1.0 1.5175 NCIH2196 CCLE Cell Line Gene CNV Profiles -1.0 -1.44834 ETV5::FOXO1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 62.1145 parasubicular cortex (parasubiculum) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.24461 MZ in primary visual cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.02102 Bach1::Mafk JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 238.158 MDA-MB-157 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.12004 SK-MEL-1 COSMIC Cell Line Gene Mutation Profiles 1.0 null NEUROD1_Deficiency_GDS3000_612_mouse_Pineal glands of neonates GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null Pheochromocytoma and Paraganglioma_PCPG_TCGA-TT-A6YK-01A-11R-A35L-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Six4 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 32.5306 PMC10115638-41591_2023_2255_MOESM4_ESM.xlsx-HGG_MYCN_deletions-Extended_Data_Table_2_Significant_regions_of_DNA_copy-number_alterations_by_DNA_methylation_class_MYCN Rummagene Transcription Factor Associations 2026 1.0 null RMGI CCLE Cell Line Gene CNV Profiles 1.0 1.5271 stratum radiatum of caudal CA1 Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.25129 SKNFI CCLE Cell Line Gene Expression Profiles 1.0 1.41459 CAPAN-1 COSMIC Cell Line Gene CNV Profiles 1.0 2.76305 TC205 DepMap CRISPR Gene Dependency 1.0 2.19772 H3K9me3_G1E_mm9_3 ENCODE Histone Modification Site Profiles 1.0 null CMK CCLE Cell Line Gene Expression Profiles 1.0 1.3666 inferior occipital gyrus, left, inferior bank of gyrus Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.8689 POLR2A_MCF-7_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null ERF::FOXI1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 37.3104 HCC1143 CCLE Cell Line Gene CNV Profiles -1.0 -1.57608 biological_process GO Biological Process Annotations 2015 1.0 null Nr2e3 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 55.087 EM2 CCLE Cell Line Gene CNV Profiles 1.0 1.60616 Pectoral fin TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.705 NCIH2004RT DepMap CRISPR Gene Dependency 1.0 2.03082 SRY JASPAR Predicted Transcription Factor Targets 1.0 null Hair follicle inner root sheath TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.099 protein complex GO Cellular Component Annotations 2015 1.0 null pineal gland Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 2.25161 hsa-miR-4657 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.13535 prepositus hypoglossal nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.39328 Nr5a1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 131.235 lateral subdivision of BNST Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.08896 SNAI3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 45.5304 MEF2D JASPAR Predicted Human Transcription Factor Targets 2025 1.0 38.5996 fusiform gyrus, right, lateral bank of gyrus Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.904032 CHP212 DepMap CRISPR Gene Dependency 1.0 2.14637 pyrazinamide_mus musculus_gpl6246_gse48027 GEO Signatures of Differentially Expressed Genes for Small Molecules -1.0 null 3M complex COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 1.414 EVSA-T Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.888915 Brain - Hippocampus GTEx Tissue Gene Expression Profiles 2023 1.0 5.05159 HS944T CCLE Cell Line Gene Expression Profiles -1.0 -2.7468 posterior hypothalamic nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.59698 SAS COSMIC Cell Line Gene Mutation Profiles 1.0 null OE33 CCLE Cell Line Gene CNV Profiles -1.0 -1.35177 Ar JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 51.7879 Zic2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 1209.8 SNU738 CCLE Cell Line Gene CNV Profiles -1.0 -1.32119 HCC2218 CCLE Cell Line Gene CNV Profiles -1.0 -1.92062 rostral subdivision of medial nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.04708 Nr1h4 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 58.8771 EFM-192C Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.910346 ZR7530 CCLE Cell Line Gene CNV Profiles -1.0 -1.68717 ERF::FIGLA JASPAR Predicted Human Transcription Factor Targets 2025 1.0 123.562 H3K4me3_megakaryocyte_mm9_2 ENCODE Histone Modification Site Profiles 1.0 null SH4 CCLE Cell Line Gene Expression Profiles -1.0 -2.45478 macromolecular complex COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.03318 EJM DepMap CRISPR Gene Dependency 1.0 2.07696 Hic1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 32.7376 ONECUT3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 53.3421 superior frontal gyrus, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.63733 CEBPB_HepG2_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null MM253 DepMap CRISPR Gene Dependency 1.0 2.38223 emboliform nucleus, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.872661 SW982 COSMIC Cell Line Gene Mutation Profiles 1.0 null OVKATE Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.70625 HT-115 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.959361 U118MG CCLE Cell Line Gene Expression Profiles -1.0 -1.53311 hsa-miR-3928 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.99187 Prostate adenocarcinoma_PRAD_TCGA-EJ-5511-01A-01R-1580-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null PMC7608835-aba3058_Table_S4.xlsx-EWS-FLI1_RING1B-Genes_containing_RING1B_EWSR1-FLI1_enhancers_FLI1 Rummagene Transcription Factor Associations 2026 1.0 null FOXA1_OE_GDS4957_10_human_LNCaP prostate cancer cells GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null PA-TU-8988T Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.922087 SNU1544 DepMap CRISPR Gene Dependency 1.0 2.12927 hypoglossal nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 2.59928 NIHOVCAR3 CCLE Cell Line Gene CNV Profiles -1.0 -1.52101 IGR-1 COSMIC Cell Line Gene Mutation Profiles 1.0 null OSR2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 80.6408 Tcf12 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 1115.18 wt1_00000000_mouse_embryonic_fibroblast_mef_lof_mouse_gpl1261_gse15325 GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations -1.0 -0.577605 HCC1428 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.32819 SOX8 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 15.7326 retroparafascicular area of thalamus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.7471 H3K9me3_CH12.LX_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null MOLM13 DepMap CRISPR Gene Dependency 1.0 2.18384 mRNA_MYC_19796622 ESCAPE Omics Signatures of Genes and Proteins for Stem Cells 1.0 null Lung squamous cell carcinoma_LUSC_TCGA-21-5782-01A-01R-1635-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Pancreatic adenocarcinoma_PAAD_TCGA-IB-A5SP-01A-11R-A32O-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null TEN CCLE Cell Line Gene CNV Profiles -1.0 -1.46955 GSE158431_2_v_0_pioglitazone_mouse RummaGEO Drug Perturbation Signatures -1.0 null supraoptic nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.927069 OVCA420 COSMIC Cell Line Gene CNV Profiles 1.0 2.76305 hsa-miR-186 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.7397 mRNA_DPPA5A_19796622 ESCAPE Omics Signatures of Genes and Proteins for Stem Cells 1.0 null hsa-miR-4699-5p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.99187 TRAPP complex COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.678 DBH_KO_GSE33906_53_mouse_heart (E10.5) GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null Crus I, right, paravermis Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.13145 RPMI8402 CCLE Cell Line Gene Expression Profiles 1.0 1.55472 Prostate adenocarcinoma_PRAD_TCGA-YL-A9WH-01A-11R-A37L-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null head TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null NEUROD1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 126.057 Prdm5 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 87.7986 retromer, cargo-selective complex COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.876 PMC10361959-41419_2023_5985_MOESM1_ESM.pdf-1493-THRA_THRA Rummagene Transcription Factor Associations 2026 1.0 null 496100472_PCx_possible Alzheimer's disease_TBI_100+_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 5.25669 PMC8046804-41467_2021_22478_MOESM11_ESM.xlsx-Del_AA-TCGA-Unnamed_41_TEAD1 Rummagene Transcription Factor Associations 2026 1.0 null Hmx2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 142.817 JAG1_OE_GDS3571_40_human_endometrial stromal cells GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null A-673 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.74935 Brain Lower Grade Glioma_LGG_TCGA-FG-A60J-01A-11R-A28M-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null III, right, paravermis Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 2.59285 mRNA_CTNNB1_19796622 ESCAPE Omics Signatures of Genes and Proteins for Stem Cells 1.0 null hair cycle GO Biological Process Annotations 2015 1.0 null central nucleus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.29447 NGP DepMap CRISPR Gene Dependency 1.0 2.08562 Atf1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 33.0287 POLR2AphosphoS5_MEL cell line_mm9_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null TGF-beta_OE_GDS2974_137_mouse_corneas GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null WSU-NHL Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.32732 cortico-medial group, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.91876 BCP1 CCLE Cell Line Gene Expression Profiles 1.0 1.45703 ELF1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 58.1432 Scapula TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.939 Rarg JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 273.777 basomedial nucleus (accessory basal nucleus) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.905747 PECAPJ15 DepMap CRISPR Gene Dependency 1.0 2.02978 Nkx2-1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 68.0058 Prdm4 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 121.534 MDAMB231 Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles 1.0 0.601305 NEUROG2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 128.852 glis2_17618285_kidney_lof_mouse_gpl2897_gds2817 GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations -1.0 -0.072961 Heschl's gyrus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.02568 NCI-H1915 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.74424 ZNF701 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 81.106 HCC38 CCLE Cell Line Gene CNV Profiles 1.0 1.43553 Venom gland TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.775 Nfe2l2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 123.781 cuneate nucleus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.4094 ZR-75-30 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.56377 496100469_TCx_no dementia_TBI_89_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 4.99952 NCI-H1792 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.23394 Arid3a JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 90.1481 KKU100 DepMap CRISPR Gene Dependency 1.0 2.23155 ventromedial hypothalamic nucleus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.917287 hsa-miR-455-3p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.7397 Neurod2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 2191.85 skin TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null mRNA_ID1_19796622 ESCAPE Omics Signatures of Genes and Proteins for Stem Cells 1.0 null Kidney renal clear cell carcinoma_KIRC_TCGA-B2-5641-01A-01R-1541-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Brain Lower Grade Glioma_LGG_TCGA-DU-7304-02A-12R-A36H-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null KYAE-1 COSMIC Cell Line Gene CNV Profiles 1.0 2.76305 Ikzf3 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 439.598 EN CCLE Cell Line Gene Expression Profiles -1.0 -1.73478 ESRRG_Deficiency_GDS2811_638_mouse_Fetal heart - Homozygous null mutant GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null cell part COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.03318 SNU1272 CCLE Cell Line Gene Expression Profiles -1.0 -1.56011 Zfp809 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 98.0396 KLF15_Deficiency_GDS2687_649_mouse_Skeletal muscle GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null hsa-miR-548x TargetScan Predicted Nonconserved microRNA Targets 1.0 1.55165 MYB JASPAR Predicted Human Transcription Factor Targets 2025 1.0 16.6706 Irf1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 183.233 VIIIA, right, paravermis Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.859699 cingulum bundle, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.57167 lateral parabrachial nucleus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.04811 macromolecular complex GO Cellular Component Annotations 2015 1.0 null OLIG3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 18.3097 POU3F2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 28.7006 BT-549 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.2056 Alx1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 149.946 Adrenocortical carcinoma_ACC_TCGA-OR-A5JY-01A-31R-A29S-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null H2AFZ_fibroblast of lung_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null TFAP4 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 183.32 subgranular zone of rostral dentate gyrus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.890853 hsa-miR-2117 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.40969 Head TISSUES Curated Tissue Protein Expression Evidence Scores 2025 1.0 4.0 tissues, cell types and enzyme sources TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.05089 Developmental Biology Reactome Pathways 2024 1.0 null intermediate filament cytoskeleton COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.03318 aging GO Biological Process Annotations 2015 1.0 null HOXD3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 16.9641 ZSCAN4 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 36.3449 CAL851 CCLE Cell Line Gene Expression Profiles -1.0 -1.99311 CTNNB_Activation (deltaNB-cateninER transgenics)_GDS1560_768_mouse_Skin - 7 Day GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null hsa-miR-3607-3p TargetScan Predicted Nonconserved microRNA Targets 1.0 0.965816 H3K4me3_G1E-ER4_mm9_3 ENCODE Histone Modification Site Profiles 1.0 null EEF1G CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -7.82121 single-organism process GO Biological Process Annotations 2015 1.0 null GSE146687_2_v_6_eribulin_human RummaGEO Drug Perturbation Signatures 1.0 null Tn polyagglutination syndrome DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.751 SKBR3 CCLE Cell Line Gene CNV Profiles 1.0 2.68531 H2AFZ_fibroblast of dermis_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null occipital pole, left, inferior aspect Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -2.43991 MAFA JASPAR Predicted Human Transcription Factor Targets 2025 1.0 144.644 TCF12_H1-hESC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Familial woolly hair syndrome DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.022 Arid3b JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 144.338 NCI-H650 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.890224 DV90 CCLE Cell Line Gene Expression Profiles 1.0 2.30598 hsa-miR-548ae TargetScan Predicted Nonconserved microRNA Targets 1.0 1.55165 temporal pole, left, medial aspect Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.854315 HCC1428 COSMIC Cell Line Gene Mutation Profiles 1.0 null MM1S DepMap CRISPR Gene Dependency 1.0 2.13718 SP in temporal polar cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.13461 JHOM2B CCLE Cell Line Gene CNV Profiles -1.0 -1.70145 hsa-miR-3664-5p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.55165 Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4799-01A-01R-1305-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null IOMMLEE CCLE Cell Line Gene Expression Profiles 1.0 1.39538 Arntl JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 51.5834 HCC2108 CCLE Cell Line Gene Expression Profiles -1.0 -1.68561 ZBTB7A JASPAR Predicted Human Transcription Factor Targets 2025 1.0 36.4063 H3K4me3_G1E-ER4_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null MSC JASPAR Predicted Human Transcription Factor Targets 2025 1.0 85.1956 Cysteine synthase complex COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.845 HUP-T3 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.26734 POU2F2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 24.2375 layer V of caudal entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.05978 TFAP4::FLI1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 152.259 Bhlha15 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 1144.57 SNU-638 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.07117 NHLH1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 188.265 frontal pole, right, superior aspect Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.79051 anteromedial nucleus of thalamus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.46058 KPL1 CCLE Cell Line Gene CNV Profiles -1.0 -1.35079 MDAMB453 CCLE Cell Line Gene CNV Profiles -1.0 -1.98416 Sox7 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 75.0197 pontine raphe nucleus, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.905379 VIIB, right, lateral hemisphere Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.31071 SG in rostral perirhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.02959 JHOS4 CCLE Cell Line Gene Expression Profiles -1.0 -1.80483 CHP-212 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.43013 Pheochromocytoma and Paraganglioma_PCPG_TCGA-W2-A7HD-01A-11R-A35L-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null lateral tuberal nuclei Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.927267 SG in caudal entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.917419 hsa-miR-943 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.99187 layer IIIa of caudal entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.17995 ZNF417 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 41.0881 amygdalostriatal transition area Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.24595 HCC1171 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.873342 hsa-miR-494 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.809003 MZ7-MEL COSMIC Cell Line Gene Mutation Profiles 1.0 null SUM149PT Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles 1.0 0.688297 PLC/PRF/5 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.05416 HOXA10 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 23.5516 Dmbx1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 25.7175 FOXJ2::ELF1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 41.4654 MZ in lateral temporal-occipital cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.08476 Lung adenocarcinoma_LUAD_TCGA-97-A4M1-01A-11R-A24X-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Retinoschisis_Retina_GSE5581 GEO Signatures of Differentially Expressed Genes for Diseases 1.0 0.824658 MCF10F Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles -1.0 -1.8418 CSTB_KO_GSE47516_677_mouse_mouse cerebellum P7 GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null SARS-CoV_12Hour_20090954_GSE17400 GEO Signatures of Differentially Expressed Genes for Viral Infections -1.0 -1.41858 ETV2::FIGLA JASPAR Predicted Human Transcription Factor Targets 2025 1.0 147.936 HOXB6 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 15.0419 cellular_component LOCATE Predicted Protein Localization Annotations 1.0 null Crus II, right, paravermis Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.934251 Lung squamous cell carcinoma_LUSC_TCGA-21-1082-01A-01R-0692-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null SCRT2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 124.362 VIIIA, right, lateral hemisphere Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.985271 NCIH1105 CCLE Cell Line Gene Expression Profiles -1.0 -2.11268 OAW42 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.908037 MZ in temporal polar cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.955525 OVISE Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.996691 HEP G2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.883045 MDAMB361 CCLE Cell Line Gene CNV Profiles -1.0 -2.16256 JHH-4 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.26883 organelle part GO Cellular Component Annotations 2015 1.0 null Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4968-01A-01R-1334-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null trochlear nucleus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.45982 DBH_KO_GDS4324_362_mouse_Embryonic heart E10.5 GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null rostral (anterior) extramural migratory stream Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.883932 NCI-H2172 COSMIC Cell Line Gene Mutation Profiles 1.0 null outer SZ in midlateral temporal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.17099 Venom apparatus TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.756 H3K4me3_megakaryocyte_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null BECKER CCLE Cell Line Gene CNV Profiles -1.0 -2.82232 bulb TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 1.50953 BARX2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 29.6311 A549 DepMap CRISPR Gene Dependency 1.0 2.00799 ZGRF1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.70889 Hmgn1_KO_GDS5010_405_mouse_liver GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null HCC1419 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.44744 Lung adenocarcinoma_LUAD_TCGA-69-7980-01A-11R-2187-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null anterior orbital gyrus, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.75887 Scalp TISSUES Curated Tissue Protein Expression Evidence Scores 2025 1.0 4.0 MAX::MYC JASPAR Predicted Human Transcription Factor Targets 2025 1.0 44.8571 SNU5 CCLE Cell Line Gene Expression Profiles 1.0 1.53103 Bcl11b JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 261.95 TGFBR2_knockout_292_GSE46150 GEO Signatures of Differentially Expressed Genes for Kinase Perturbations 1.0 1.46653 hsa-miR-4735-3p TargetScan Predicted Nonconserved microRNA Targets 1.0 0.880544 UACC812 CCLE Cell Line Gene Expression Profiles 1.0 2.18801 Keratin-associated protein InterPro Predicted Protein Domain Annotations 1.0 null NCIH1299 CCLE Cell Line Gene CNV Profiles -1.0 -1.64065 Atoh1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 222.607 Dlx2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 71.7674 TCF3 ENCODE Transcription Factor Targets 1.0 null dorsal subdivision of VLC Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.63167 NCI-H2452 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.6272 Crx JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 64.5867 molting cycle GO Biological Process Annotations 2015 1.0 null FOS JASPAR Predicted Human Transcription Factor Targets 2025 1.0 23.9585 Nr2f6 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 213.84 FOXH1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 31.1452 fastigial nucleus, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.52229 Hair TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.056 CTCF ENCODE Transcription Factor Targets 1.0 null SNU61 DepMap CRISPR Gene Dependency 1.0 2.20327 VZ in superolateral temporal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.87825 496100419_TCx_no dementia_TBI_78_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 6.55771 TFAP4::ETV1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 148.654 NR3C2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 25.4615 VSX1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 14.9136 YY1 JASPAR Predicted Transcription Factor Targets 1.0 null superior rostral gyrus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.28299 EFM19 DepMap CRISPR Gene Dependency 1.0 2.11538 496100460_TCx_possible Alzheimer's disease_TBI_100+_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.60397 NCIH1915 CCLE Cell Line Gene CNV Profiles -1.0 -1.80157 Spz1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 279.25 Intraciliary transport particle B COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.623 Npas2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 24.0638 PC-3 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.990684 IKZF1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 49.5866 TCF12_GM12878_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null FOXP2 ENCODE Transcription Factor Targets 1.0 null Pax7 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 161.201 CP66-MEL COSMIC Cell Line Gene Mutation Profiles 1.0 null RFX3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 27.4394 Nr1h2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 33.9455 HCC2218 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.67797 KPL-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.36878 NANOG-20526341-ESCS-HUMAN ChEA Transcription Factor Targets 2022 1.0 null IZ in medial temporal-occipital cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.870424 SK-MEL-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.4879 JHUEM1 DepMap CRISPR Gene Dependency 1.0 2.02209 H3K9me3_G1E_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null MHH-ES-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -2.0364 SUIT2 DepMap CRISPR Gene Dependency 1.0 2.16448 ERF JASPAR Predicted Human Transcription Factor Targets 2025 1.0 19.2808 NCIH1184 CCLE Cell Line Gene CNV Profiles 1.0 1.55993 Lhx1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 101.377 MDAMB157 Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles 1.0 0.938723 UM-UC-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.1873 Ptf1a JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 1524.63 Msx3 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 105.656 Brain Lower Grade Glioma_LGG_TCGA-HT-A5R7-01A-11R-A28M-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null H-EMC-SS COSMIC Cell Line Gene Mutation Profiles 1.0 null FOXD4 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.40629 layer III of area 35c Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.08853 EFM-192B Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.0428 CEBPE JASPAR Predicted Human Transcription Factor Targets 2025 1.0 21.4369 EBC-1 COSMIC Cell Line Gene Mutation Profiles 1.0 null paraventricular nuclei, right of thalamus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.2392 OTX2_silencing_GDS4472_136_human_D425 medulloblastoma (MB) cells GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null NCI-H1693 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.27789 intracellular part COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.03318 extracellular region LOCATE Predicted Protein Localization Annotations 1.0 null gigantocellular reticular nuclei Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.00512 paraventricular nucleus of the hypothalamus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.22527 Sox3 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 97.3688 GSS CCLE Cell Line Gene Expression Profiles -1.0 -2.04727 H3K4me3_G1E_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null Brain Lower Grade Glioma_LGG_TCGA-DU-5855-01A-11R-1708-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null lateral intermediate part of entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.27886 CAPAN1 CCLE Cell Line Gene CNV Profiles 1.0 1.74416 V, right, paravermis Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.883502 LMX1A JASPAR Predicted Human Transcription Factor Targets 2025 1.0 22.7859 Foxo1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 108.278 L428 CCLE Cell Line Gene Expression Profiles 1.0 1.6916 CFPAC1 DepMap CRISPR Gene Dependency 1.0 2.38585 Ascl2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 2322.53 LMX1B JASPAR Predicted Human Transcription Factor Targets 2025 1.0 18.537 OVMANA Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.834197 HUT102 CCLE Cell Line Gene Expression Profiles 1.0 2.22895 Nr2e1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 95.0993 Sox5 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 71.75 cytoskeletal part GO Cellular Component Annotations 2015 1.0 null deep layers of caudal entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.04156 Sox1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 209.115 MEWO Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.69538 H3K9me3_CH12.LX_mm9_2 ENCODE Histone Modification Site Profiles 1.0 null Nr5a2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 68.2209 cell COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.03318 Rhox11 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 17.2839 TC-71 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.44744 Mammary duct TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.537 HS683 CCLE Cell Line Gene Expression Profiles -1.0 -1.81745 Stat4 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 174.83 Prostate adenocarcinoma_PRAD_TCGA-KK-A7AW-01A-11R-A32O-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null DAN-G Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.95149 ISHIKAWAHERAKLIO02ER DepMap CRISPR Gene Dependency 1.0 2.2958 POLR2AphosphoS5_MEL cell line_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null mRNA_KLF4_19796622 ESCAPE Omics Signatures of Genes and Proteins for Stem Cells 1.0 null Brain Lower Grade Glioma_LGG_TCGA-DU-6407-02B-11R-A36H-07,TCGA-DU-6407-02A-12R-A36H-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null hsa-miR-3647-3p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.0155 ULK1_knockout_198_GSE60778 GEO Signatures of Differentially Expressed Genes for Kinase Perturbations 1.0 1.56076 JIMT-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -2.57211 FOXO1::ELK1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 80.6237 GB-1 COSMIC Cell Line Gene Mutation Profiles 1.0 null hsa-miR-18a TargetScan Predicted Nonconserved microRNA Targets 1.0 0.809003 PL45 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.4858 Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-6938-11A-01R-1915-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Lung adenocarcinoma_LUAD_TCGA-55-8302-01A-11R-2326-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null dorsomedial hypothalamic nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.844817 BICR31 CCLE Cell Line Gene CNV Profiles 1.0 1.507 IKZF2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 34.4781 MEL270 DepMap CRISPR Gene Dependency 1.0 2.15046 DMS-114 COSMIC Cell Line Gene Mutation Profiles 1.0 null Mafg JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 99.5034 Acute Myeloid Leukemia_LAML_TCGA-AB-2943-03A-01T-0740-13 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Prostate adenocarcinoma_PRAD_TCGA-KC-A4BN-01A-61R-A250-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null lateral tuberal nucleus, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.97653 PMC10335698-pone.0285806.s007.xlsx-DMKN-shRNA_KD_Vs_ShSrc-Unnamed_5_AR Rummagene Transcription Factor Associations 2026 1.0 null multicellular organismal process GO Biological Process Annotations 2015 1.0 null FLI1::FOXI1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 48.5952 Zic1::Zic2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 1662.85 Pheochromocytoma and Paraganglioma_PCPG_TCGA-SR-A6MS-01A-11R-A35L-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null NKX2-1_01_66 KnockTF Gene Expression Profiles with Transcription Factor Perturbations -1.0 -0.61095 POU2F1::SOX2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 36.1779 Nobox JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 93.0526 FOXA1_OE_GDS4957_144_human_LNCaP prostate cancer cells GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null OVKATE CCLE Cell Line Gene CNV Profiles -1.0 -1.74868 Stat5b JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 72.4265 BL70 CCLE Cell Line Gene Expression Profiles 1.0 1.49171 HCC1599 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.59725 Arx JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 142.588 CORL88 CCLE Cell Line Gene CNV Profiles -1.0 -1.36601 EBNA1-20929547-CHIP-SEQ-RAJI-CELLS-HUMAN ChEA Transcription Factor Targets 2022 1.0 null Stat6 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 59.4449 hsa-miR-3924 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.99187 EFM-192A Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.12094 PRKAG3_Mutation (R225Q)_GSE4067_390_mouse_Skeletal muscle GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null Gfi1b JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 113.661 hsa-miR-3607-5p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.0155 ZFP57 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 79.7934 ZKSCAN1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 37.4779 Adenofibroma DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.056 SUPT11 CCLE Cell Line Gene Expression Profiles 1.0 1.83389 HN Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.922087 Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-C5-A1MF-01A-11R-A13Y-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null PRKCA_KO_GDS2141_300_mouse_small intestine GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null Hoxa11 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 17.7179 RKO COSMIC Cell Line Gene Mutation Profiles 1.0 null YMB-1-E COSMIC Cell Line Gene Mutation Profiles 1.0 null NCIH1563 CCLE Cell Line Gene CNV Profiles 1.0 2.19685 EGFR_druginhibition_83_GSE27640 GEO Signatures of Differentially Expressed Genes for Kinase Perturbations 1.0 2.13529 POU4F2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 54.9227 HUG1N CCLE Cell Line Gene Expression Profiles 1.0 1.35843 CHP212 CCLE Cell Line Gene CNV Profiles 1.0 1.75028 BLOC complex COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.667 ELK1::HOXA1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 16.6604 hsa-miR-3163 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.2992 SKBR3 DepMap CRISPR Gene Dependency 1.0 2.27107 Kidney renal clear cell carcinoma_KIRC_TCGA-CJ-4869-01A-02R-1426-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null NOTCH1_Deficiency_GDS2848_635_mouse_Hair follicles GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null NUGC4 CCLE Cell Line Gene CNV Profiles 1.0 1.94975 whole plant TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.41848 ARGFX JASPAR Predicted Human Transcription Factor Targets 2025 1.0 17.88 Nr1h3::Rxra JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 78.8054 Tfcp2l1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 72.3826 Supraspliceosomal complex COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 1.273 CALU-3 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.1873 DETROIT 562 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.95149 COLO678 DepMap CRISPR Gene Dependency 1.0 2.29797 TE1 CCLE Cell Line Gene Expression Profiles -1.0 -1.50162 Zic3 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 2485.78 prostate GTEx Tissue Gene Expression Profiles 1.0 1.15234 Brain - Cerebellar Hemisphere GTEx Tissue Gene Expression Profiles 2023 1.0 5.05159 laterodorsal part of putamen Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.877491 lower limb region of M1 Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.963693 animal TISSUES Curated Tissue Protein Expression Evidence Scores 1.0 null COLO668 CCLE Cell Line Gene CNV Profiles -1.0 -1.40115 intracellular non-membrane-bounded organelle COMPARTMENTS Curated Protein Localization Evidence Scores 1.0 0.03318 FIGLA JASPAR Predicted Human Transcription Factor Targets 2025 1.0 68.8521 ONECUT1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 38.1273 Bladder Urothelial Carcinoma_BLCA_TCGA-BL-A5ZZ-01A-31R-A30C-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null supraoptic nucleus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.31159 HCC1419 CCLE Cell Line Gene CNV Profiles -1.0 -1.49595 NUP58 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.07763 CPC-N Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.23163 AU565 CCLE Cell Line Gene CNV Profiles 1.0 2.84602 LN319 DepMap CRISPR Gene Dependency 1.0 2.05004 mRNA_FEM1B_19796622 ESCAPE Omics Signatures of Genes and Proteins for Stem Cells 1.0 null Gata3 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 52.4914 Pancreatic adenocarcinoma_PAAD_TCGA-HZ-8638-01A-11R-2404-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null ETV2::DRGX JASPAR Predicted Human Transcription Factor Targets 2025 1.0 21.8939 PMC10290283-biol-2022-0622-sm3.pdf-21-HOXB1_HOXB1 Rummagene Transcription Factor Associations 2026 1.0 null 496100426_PCx_no dementia_TBI_90-94_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 4.50086