association	dataset	threshold value	standardized value
Combined oxidative phosphorylation deficiency 6	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.755
OVCA420	COSMIC Cell Line Gene CNV Profiles	1.0	2.76305
NCIH1915	CCLE Cell Line Gene CNV Profiles	-1.0	-1.75351
VMRCLCD	DepMap CRISPR Gene Dependency	1.0	3.7784
intracellular organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
DETROIT 562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.950438
HDAC2_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KYAE-1	COSMIC Cell Line Gene CNV Profiles	1.0	2.76305
MOLM-16	COSMIC Cell Line Gene Mutation Profiles	1.0	null
TCF12_ECC-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TGIF2LY	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.5444
HCC1171	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.883878
ZIC1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	71.4397
Corneocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.605
HCC1428	CCLE Cell Line Gene CNV Profiles	-1.0	-1.42518
WSU-NHL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.3285
SOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.1073
SRF_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HMBOX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.779
POU5F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.9432
HCC1143	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.44573
Tn polyagglutination syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.522
H3K27me3_kidney epithelial cell_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2735
NCIH522	CCLE Cell Line Gene CNV Profiles	1.0	1.55333
organelle part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
H3K27me3_ES-Bruce4_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ELF5	JASPAR Predicted Transcription Factor Targets	1.0	null
ZBTB18	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.1846
OCILY18	DepMap CRISPR Gene Dependency	1.0	3.69492
496100458_FWM_no dementia_no TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.13487
PMC9378714-41467_2022_31999_MOESM10_ESM.xlsx-Supplementary_Data_7-Supplementary_Data_7_Collation_of_genes_possible_regulated_or_co-expressed_with_ELF5_ELF5	Rummagene Transcription Factor Associations 2026	1.0	null
496100460_TCx_possible Alzheimer's disease_TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.60397
RARA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	52.3461
HCC1569	COSMIC Cell Line Gene Mutation Profiles	1.0	null
FOSL2::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.5528
EVSA-T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.888813
EFO21	DepMap CRISPR Gene Dependency	1.0	2.33888
MDA-MB-157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.11594
NR3C2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.3319
COLO 680N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.379
RERFLCSQ1	DepMap CRISPR Gene Dependency	1.0	4.98753
NCI-H1693	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2735
macromolecular complex	GO Cellular Component Annotations 2015	1.0	null
MGA::EVX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.844
MDA-MB-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.69164
SCRT1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.0591
protein complex	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
NCI-H596	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.988905
SNU-638	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07576
TCF3	ENCODE Transcription Factor Targets	1.0	null
NFI-21473784-ESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
SW1088	COSMIC Cell Line Gene Mutation Profiles	1.0	null
OVCA 420	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.27696
JHH-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.834548
HEC-1-A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00932
Intraciliary transport particle A	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.589
496100472_PCx_possible Alzheimer's disease_TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.25669
COLO-783	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GSE111061_1_v_0_tofacitinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Connective tissue benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.033
SUDHL1	CCLE Cell Line Gene CNV Profiles	1.0	2.10339
H3K4me3_megakaryocyte_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
ZNF675	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.9238
organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
LYSP100-associated nuclear domain	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.631
ISL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.7749
TGIF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.936
JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.5965
EFM-192A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.11684
BT-20	COSMIC Cell Line Gene Mutation Profiles	1.0	null
ETS1-22383799-G1ME-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
intracellular part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
MAFA	MotifMap Predicted Transcription Factor Targets	1.0	null
ZBTB7C	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.2497
cellular_component	GO Cellular Component Annotations 2015	1.0	null
CDX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.7388
TCF12_ECC-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KYAE-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
HCC202	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.910604
H3K27me3_CD14-positive monocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
M059K	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.855151
PMC8046804-41467_2021_22478_MOESM11_ESM.xlsx-Del_AA-TCGA-Unnamed_41_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
BATF::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.6276
NCI-H1915	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.74654
ATOH7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.2834
Hypohidrotic ectodermal dysplasia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.066
PAX2	JASPAR Predicted Transcription Factor Targets	1.0	null
LB771HNC	DepMap CRISPR Gene Dependency	1.0	2.99772
H3K27me3_Duodenum Smooth Muscle	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
PMC4823830-ncomms11171-s3.xlsx-high_in_shRNA_GATA3-GeneSymbol_GATA3	Rummagene Transcription Factor Associations 2026	1.0	null
COLO668	CCLE Cell Line Gene CNV Profiles	-1.0	-1.38166
BATF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.8512
intracellular organelle part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
AR-27623747-22RV1-MOUSE-PROSTATE-CARCINOMA	ChEA Transcription Factor Targets 2022	1.0	null
Keratinization	Reactome Pathways 2024	1.0	null
cell part	GO Cellular Component Annotations 2015	1.0	null
TEN	CCLE Cell Line Gene CNV Profiles	-1.0	-1.44613
COLO 792	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.917682
cytoskeletal part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
Moh	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.927
H3K27me3_IMR90	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
HCC70	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.01436
FOSB::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.1302
SOX9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.0132
Hair follicle inner root sheath	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.532
cytoskeleton	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
PMC7880998-41467_2021_21255_MOESM8_ESM.xlsx-Sup_Data_5_TWIST_Panel-Gene_Name_TWIST1	Rummagene Transcription Factor Associations 2026	1.0	null
CPC-N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23321
Hair root	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.611
H2803	COSMIC Cell Line Gene Mutation Profiles	1.0	null
ZIC5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	71.454
NCI-H2795	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.55729
TYK-NU.CP-R	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.28526
EZH2_keratinocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HAND2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.5909
MSC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	49.2985
CEBPB_K562_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BLOC-1 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.781
NFATC4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.7601
496100391_FWM_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.1708
SKN3	DepMap CRISPR Gene Dependency	1.0	6.16522
FUOV1	CCLE Cell Line Gene CNV Profiles	1.0	1.34208
RFX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.2895
RCOR1	ChEA Transcription Factor Targets	1.0	null
BLOC complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.681
FERD3L	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.9318
H3K27me3_bronchial epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCIH2452	CCLE Cell Line Gene CNV Profiles	1.0	1.40349
HCC1011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.989518
SATB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.2242
H3K9me3_fibroblast of lung_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
ZR7530	CCLE Cell Line Gene CNV Profiles	-1.0	-1.65013
intracellular	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
HUP-T3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.26866
Ciliary base	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.635
H3K27me3_fibroblast of lung_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GID complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.869
POU4F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.112
H2AFZ_osteoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NEUROG2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.8438
MEWO	COSMIC Cell Line Gene Mutation Profiles	1.0	null
MYC	ENCODE Transcription Factor Targets	1.0	null
496100466_PCx_probable Alzheimer's disease_no TBI_89_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.08771
A673	CCLE Cell Line Gene CNV Profiles	-1.0	-1.86507
H3K4me3_G1E_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
HCC1143	CCLE Cell Line Gene CNV Profiles	-1.0	-1.54711
protein complex	GO Cellular Component Annotations 2015	1.0	null
H3K4me1_megakaryocyte_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
CHD1	ENCODE Transcription Factor Targets	1.0	null
JIMT-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.57842
A-673	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.75171
ETS2	MotifMap Predicted Transcription Factor Targets	1.0	null
DUX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	50.1255
PLC/PRF/5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05119
TAL1_erythroblast_mm9_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SOX18	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.1459
BICR 31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.843963
TK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.834548
PBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.0177
OVCAR433	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.950438
HCC1171	CCLE Cell Line Gene CNV Profiles	1.0	1.46854
UACC893	DepMap CRISPR Gene Dependency	1.0	4.1924
MKN-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.834548
Intraciliary transport particle B	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.637
HOXB6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.2335
MDAMB453	CCLE Cell Line Gene CNV Profiles	-1.0	-1.9126
NCI-H920	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.976308
COLO 678	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.69142
HT-115	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.967594
ESR1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.5258
SCH	DepMap CRISPR Gene Dependency	1.0	11.5503
AU565	COSMIC Cell Line Gene CNV Profiles	1.0	2.76305
mRNA_TCEA3_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	-1.0	null
HCC1599	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.60047
EZH2_mammary epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POU4F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.4868
ZR-75-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.56398
MDAMB361	CCLE Cell Line Gene CNV Profiles	-1.0	-2.06254
LK-2	COSMIC Cell Line Gene Mutation Profiles	1.0	null
KPL1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33338
NCI-H250	COSMIC Cell Line Gene Mutation Profiles	1.0	null
J82	COSMIC Cell Line Gene Mutation Profiles	1.0	null
ASCL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	84.5427
DPRX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.5594
KP-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.847574
NFATC3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.3462
KYSE-50	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Charcot-Marie-Tooth disease type X	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.139
FOSL1::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.141
SCABER	COSMIC Cell Line Gene Mutation Profiles	1.0	null
CFPAC1	CCLE Cell Line Gene CNV Profiles	1.0	1.51745
PMC10011543-41419_2023_5707_MOESM4_ESM.xlsx-genes_with_unique_SNP-F5-Thygro-r__CIC-1n_h-r__CIC-2n_h-r_CIC	Rummagene Transcription Factor Associations 2026	1.0	null
PPARG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.25
HSF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.3356
697	DepMap CRISPR Gene Dependency	1.0	2.35464
SOX13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.9337
H3K9me3_G1E_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
Collecting duct cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.817
NUGC-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.45764
H3K4me1_H1 BMP4 Derived Trophoblast Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
496100426_PCx_no dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.50086
NCIH1930	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
HSF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.2881
POLR2AphosphoS5_MEL cell line_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
LHX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.3752
Amylin receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.69
BNC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.4914
HNF4, COUP	MotifMap Predicted Transcription Factor Targets	1.0	null
ZNF317	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.0482
ZNF384	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	152.979
intermediate filament	GO Cellular Component Annotations 2015	1.0	null
JDP2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.1156
POU3F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.1387
MHH-ES-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.03984
OKAJIMA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07477
3-M syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.232
Nuclear exosome targeting complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.805
SK-MEL-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.14899
MFE280	DepMap CRISPR Gene Dependency	1.0	2.86348
SNAI3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.5743
ZFP57	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.5698
H3K27me3_fibroblast of dermis_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BICR10	DepMap CRISPR Gene Dependency	1.0	7.47379
HOXD11	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.5969
HOXB9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.3866
MYCN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.1635
OVISE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00381
CFPAC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.91431
KYSE220	DepMap CRISPR Gene Dependency	1.0	5.12679
POLR2AphosphoS5_G1E_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
NCI-H2198	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20094
FOXE1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	94.3222
NCIH1184	CCLE Cell Line Gene CNV Profiles	1.0	1.55985
JHH-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.27015
JHOM2B	CCLE Cell Line Gene CNV Profiles	-1.0	-1.66332
SRF	ENCODE Transcription Factor Targets	1.0	null
MYF6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.1973
COV504	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33338
H3K4me3_megakaryocyte_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
496100469_TCx_no dementia_TBI_89_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.99952
OV-7	COSMIC Cell Line Gene Mutation Profiles	1.0	null
NEUROD2-26341353-CORTEX-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
Keratin-associated protein	InterPro Predicted Protein Domain Annotations	1.0	null
COLO 699	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07856
OVCA 432	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.84823
MOGGUVW	DepMap CRISPR Gene Dependency	1.0	2.08252
Charcot-Marie-Tooth disease X-linked recessive 4	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.602
PANC1005	CCLE Cell Line Gene CNV Profiles	1.0	1.85734
BT-549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20094
Sebaceous gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.942
H3K27me3_cardiac mesoderm_hg19_7	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HOXA10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.1217
RL	COSMIC Cell Line Gene Mutation Profiles	1.0	null
3M complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.428
NCI-H2066	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Dermal papilla	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.263
TAL1	ENCODE Transcription Factor Targets	1.0	null
OVKATE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.70821
Palmoplantar keratoderma-esophageal carcinoma syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.498
D-263MG	COSMIC Cell Line Gene Mutation Profiles	1.0	null
OPM-2	COSMIC Cell Line Gene Mutation Profiles	1.0	null
FOSL2::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.8212
light-harvesting complex, peripheral complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.646
PHOX2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.1853
HEP G2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.893381
496100416_FWM_dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.36041
YY1	MotifMap Predicted Transcription Factor Targets	1.0	null
HDAC2	ENCODE Transcription Factor Targets	1.0	null
PHOX2B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.619
ZNF354A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	106.906
SRY-25088423-EMBRYONIC-GONADS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
POLR2A_A549_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PMC12619835-41467_2025_66007_MOESM8_ESM.xlsx-Basal_KLF5_peaks-Gene_Name_KLF5	Rummagene Transcription Factor Associations 2026	1.0	null
H3K27me3_cardiac mesoderm_hg19_8	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SK-MEL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49
ZBTB26	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.2833
FOSL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.3227
intracellular non-membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
CAL-72	COSMIC Cell Line Gene Mutation Profiles	1.0	null
HCC2998	COSMIC Cell Line Gene Mutation Profiles	1.0	null
NCI-H2110	COSMIC Cell Line Gene Mutation Profiles	1.0	null
H3K27me3_CD8 Naive Primary Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
NFE2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.797
AP-2rep	MotifMap Predicted Transcription Factor Targets	1.0	null
MJ	DepMap CRISPR Gene Dependency	1.0	3.15769
intracellular part	GO Cellular Component Annotations 2015	1.0	null
FOXC1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.8658
intermediate filament cytoskeleton	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
keratin filament	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
FOS::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.2768
FOXD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	120.837
H3K27me3_keratinocyte_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
intracellular organelle part	GO Cellular Component Annotations 2015	1.0	null
ATF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.6356
H3K9me3_G1E_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
H3K27me3_A549_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2A	ENCODE Transcription Factor Targets	1.0	null
KYM-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
RMG-I	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.969988
FIGLA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.7626
Developmental Biology	Reactome Pathways 2024	1.0	null
BECKER	DepMap CRISPR Gene Dependency	1.0	14.1094
NPHP complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.706
NIHOVCAR3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.49486
DMS-79	COSMIC Cell Line Gene Mutation Profiles	1.0	null
HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.9346
H3K27me3_keratinocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SNU-449	COSMIC Cell Line Gene Mutation Profiles	1.0	null
SK-BR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.19301
SKBR3	CCLE Cell Line Gene CNV Profiles	1.0	2.68541
TCF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.9154
RCOR1-19997604-NEURONS-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
GATA5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.349
CHL-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
RCOR1-19997604-NEURONS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
MYF5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.1698
MDA-MB-453	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.83763
UM-UC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1894
EB2	COSMIC Cell Line Gene Mutation Profiles	1.0	null
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
MYOD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.1476
MHHES1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.97155
SRY	ChEA Transcription Factor Targets	1.0	null
LNCAP-CLONE-FGC	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Mammary duct	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.562
PFEIFFER	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0071
H3K4me3_H1 Derived Neuronal Progenitor Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
RORA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.0633
ZNF449	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.5128
B800-820 antenna complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.789
NUGC-3	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GSE146687_2_v_5_eribulin_human	RummaGEO Drug Perturbation Signatures	1.0	null
ZNF157	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.6754
Hypodermis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.885
Leishmaniasis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.003
Hair shaft	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.849
MOLT-4	COSMIC Cell Line Gene Mutation Profiles	1.0	null
NB5	COSMIC Cell Line Gene Mutation Profiles	1.0	null
cytoskeletal part	GO Cellular Component Annotations 2015	1.0	null
SRY-25088423-EMBRYONIC GONADS-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
Adipocyte cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.562
FOSL1::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.2
DOR 13	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.56398
GABPA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.3293
SU-DHL-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07576
PA-TU-8988T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.931363
A549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1894
RARG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.3188
PMC12616242-can-24-3452_supplementary_table_s2_suppst2.xlsx-Up_bins-Up_bins_gaining_H3K27me3_in_hpMSC-EWSR1_FLI1_FLI1	Rummagene Transcription Factor Associations 2026	1.0	null
OE33	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33433
LS-411N	COSMIC Cell Line Gene Mutation Profiles	1.0	null
H3K4me3_G1E-ER4_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
H3K27me3_G1E-ER4_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC2218	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.67964
JIMT1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.377
TCF7L2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.9962
PMC12619835-41467_2025_66007_MOESM8_ESM.xlsx-Basal_KLF5_peaks-Nearest_Ensembl_KLF5	Rummagene Transcription Factor Associations 2026	1.0	null
MEF2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.9157
MYC_MCF-7_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC38	CCLE Cell Line Gene CNV Profiles	1.0	1.4355
EZH2_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NR3C1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.0471
TGIF2LX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.5675
H3K4me1_Penis Foreskin Keratinocyte Primary Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
TFAP4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	70.5683
PANC 05.04	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.990307
Combined oxidative phosphorylation deficiency	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.148
Dsl1/NZR complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.238
LCLC-97TM1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.14792
NCIN87	CCLE Cell Line Gene CNV Profiles	1.0	2.36415
CAPAN1	CCLE Cell Line Gene CNV Profiles	1.0	1.74421
TCF3_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
OVISE	COSMIC Cell Line Gene Mutation Profiles	1.0	null
CEBPB	ENCODE Transcription Factor Targets	1.0	null
MXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.5169
DAN-G	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.950438
BACH2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.5744
POU3F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.8284
PROP1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	50.1256
Hair follicle outer root sheath	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.298
TAL1::TCF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.0455
EM2	CCLE Cell Line Gene CNV Profiles	1.0	1.60606
H3K27me3_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CAPAN-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.46694
PMC7608835-aba3058_Table_S4.xlsx-EWS-FLI1_RING1B-Genes_containing_RING1B_EWSR1-FLI1_enhancers_FLI1	Rummagene Transcription Factor Associations 2026	1.0	null
TE-5	COSMIC Cell Line Gene Mutation Profiles	1.0	null
HCC1419	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.44573
HN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.931363
Parasitic ectoparasitic infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.27
ZNF652	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.746
H3K9me3_CH12.LX_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
ZNF582	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.6758
ESO26	COSMIC Cell Line Gene Mutation Profiles	1.0	null
CDX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.9092
Amylin receptor complex 1	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.779
MEF2C	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.3373
MEIS3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.6463
JHESOAD1	CCLE Cell Line Gene CNV Profiles	1.0	1.75629
EFM-192B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04003
cell	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
LC1SQ	DepMap CRISPR Gene Dependency	1.0	2.41877
HOXD9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.9963
COV362	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.32448
SOX10	MotifMap Predicted Transcription Factor Targets	1.0	null
NCI-H1299	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.910604
CAPAN-1	COSMIC Cell Line Gene CNV Profiles	1.0	2.76305
COR-L88	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.24129
COLO678	CCLE Cell Line Gene CNV Profiles	1.0	1.79065
CORL88	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34814
keratin filament	GO Cellular Component Annotations 2015	1.0	null
TWIST1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.2317
POLR2A_MCF-7_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TGM2_KD_GSE23702_713_human_NB4 cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
BATF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.5242
MAX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.6192
GSE128844_0_v_3_chloroquine_human	RummaGEO Drug Perturbation Signatures	1.0	null
SUDHL5	DepMap CRISPR Gene Dependency	1.0	3.50661
OCILY19	DepMap CRISPR Gene Dependency	1.0	2.72795
EZH2	ENCODE Transcription Factor Targets	1.0	null
EFM-19	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.44797
H3K27me3_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.1391
POLR2AphosphoS5_MEL cell line_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PGR	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.6488
FOXD2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.3138
TBXT	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.7694
HSF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.707
PKNOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.2133
496100421_PCx_probable Alzheimer's disease_TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.40625
TCF12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.84
macromolecular complex	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
POU2F1::SOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.1795
496100367_FWM_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.68243
RMGI	CCLE Cell Line Gene CNV Profiles	1.0	1.52704
ERF::FIGLA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.1755
ZIC4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	63.4413
TC-71	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.44573
OVKATE	CCLE Cell Line Gene CNV Profiles	-1.0	-1.70589
NKX2-4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.3617
HCC2218	CCLE Cell Line Gene CNV Profiles	-1.0	-1.85765
HCC515	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.910604
H3K27me3_CH12.LX_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
FOSL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.9654
SJSA1	DepMap CRISPR Gene Dependency	1.0	2.19776
NCIH1299	CCLE Cell Line Gene CNV Profiles	-1.0	-1.6066
Hair medulla	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.554
SOX8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.0619
H3K27me3_mononuclear cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CEBPB_HepG2_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ONECUT3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	75.9462
TGIF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.0136
MDA-MB-468	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.847574
GSE245778_1_v_0_runx1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
COV504	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20094
MEIS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	55.0638
TRAPP complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.692
NCIH2196	CCLE Cell Line Gene CNV Profiles	-1.0	-1.42631
NCI-H1876	COSMIC Cell Line Gene Mutation Profiles	1.0	null
MEWO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.6996
CHP-212	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.43174
HOXD12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.1069
DOK	DepMap CRISPR Gene Dependency	1.0	4.15553
cell part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
non-membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
SU-DHL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.36942
thiamine_rattus norvegicus_gpl2896_gse19292	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
YAE1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.5319
TCF12_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
OAW42	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.917682
CALU-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1894
TCF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.9653
19036130-TableS1a	GeneSigDB Published Gene Signatures	1.0	null
NR1D2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.1432
PC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.988905
FOXF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.9933
H3K9me3_CH12.LX_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
CHP212	CCLE Cell Line Gene CNV Profiles	1.0	1.75032
TBX21	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.6432
HOXC12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.9357
NCI-H2452	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.63073
KELLY	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.33188
ROS50	DepMap CRISPR Gene Dependency	1.0	2.35844
496100409_FWM_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.07917
NCIH211	CCLE Cell Line Gene CNV Profiles	1.0	1.36006
JEKO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.36634
intermediate filament	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
SRF_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC1263	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20094
NCIH1563	CCLE Cell Line Gene CNV Profiles	1.0	2.19679
H4K20me1_HeLa-S3_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
BICR31	CCLE Cell Line Gene CNV Profiles	1.0	1.50696
HUH6	DepMap CRISPR Gene Dependency	1.0	2.00706
CDX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.3427
PL45	CCLE Cell Line Gene CNV Profiles	1.0	1.94552
TC71	CCLE Cell Line Gene CNV Profiles	-1.0	-1.55306
G111	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.833377
RXRA::VDR	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.6
NCIH1755	DepMap CRISPR Gene Dependency	1.0	3.23829
Desmoid tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.545
Cuticle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.734
MYC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.0637
TMK1	DepMap CRISPR Gene Dependency	1.0	4.06768
PL45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.48788
EFM-192C	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.909949
496100420_PCx_probable Alzheimer's disease_no TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.69967
HCC1897	CCLE Cell Line Gene CNV Profiles	-1.0	-1.43746
SREBF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.901
NCI-N87	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.21961
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2735
Hair follicle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.401
496100459_PCx_no dementia_no TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.35003
JUN::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.3187
BHLHE23	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.1458
H3K9me3_G1E_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
SNAI2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.7632
HCC1419	CCLE Cell Line Gene CNV Profiles	-1.0	-1.47111
Dentinogenesis imperfecta	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.041
HOXC9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.889
ZEB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.2272
HUPT3	CCLE Cell Line Gene CNV Profiles	1.0	1.4892
HCC1428	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.32448
SCRT2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.4638
Asi complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.199
CREB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.7617
Hair	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.748
NCI-H1792	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.22926
PMC12619835-41467_2025_66007_MOESM13_ESM.xlsx-Sheet1-Basal_like_KLF5_peaks_KLF5	Rummagene Transcription Factor Associations 2026	1.0	null
NCI-H1417	COSMIC Cell Line Gene Mutation Profiles	1.0	null
AU565	CCLE Cell Line Gene CNV Profiles	1.0	2.84587
Tick infestation	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.515
mpkCCD cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.159
496100418_TCx_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	7.65926
PMC9541747-AGE-53-680-s003.xlsx-TableS6-Table_S6_Genes_with_missense_mutations_in_Yaroslavl_cattle_MAF_0_1_and_FST_0_4_in_the_1000_Bull_Genomes_Run_9_MAF	Rummagene Transcription Factor Associations 2026	1.0	null
tretinoin_homo sapiens_gpl6244_gds4180	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
TCF12	ENCODE Transcription Factor Targets	1.0	null
NMCG1	DepMap CRISPR Gene Dependency	1.0	2.60545
KYAE1	DepMap CRISPR Gene Dependency	1.0	13.6711
H3K4me3_G1E-ER4_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
KPL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.36568
Feather	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.823
BECKER	CCLE Cell Line Gene CNV Profiles	-1.0	-2.50583
SKES1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.21192
organelle part	GO Cellular Component Annotations 2015	1.0	null
Omasum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.144
PMC10115638-41591_2023_2255_MOESM4_ESM.xlsx-HGG_MYCN_deletions-Extended_Data_Table_2_Significant_regions_of_DNA_copy-number_alterations_by_DNA_methylation_class_MYCN	Rummagene Transcription Factor Associations 2026	1.0	null
NIH:OVCAR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28321
Cornified envelope	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.317
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.847574
CHD1_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NEUROG1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.6322
496100419_TCx_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	6.55771
OVCAR-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.869196
stat3_18500982_mesc_gof_mouse_gpl83_gds3446	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	1.0	0.113631
cellular_component	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
AM38	DepMap CRISPR Gene Dependency	1.0	4.29057
FOXL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.3558
NUGC4	CCLE Cell Line Gene CNV Profiles	1.0	1.94967
ZNF558	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	110.893