association	dataset	threshold value	standardized value
TFAP4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.9161
NCI-H1792	COSMIC Cell Line Gene Mutation Profiles	1.0	null
NFATC4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.0396
ZIC4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	54.7532
RCM1	DepMap CRISPR Gene Dependency	1.0	3.06525
NCI-H1915	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.74918
OE33	COSMIC Cell Line Gene CNV Profiles	1.0	2.11435
MYC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.9158
CALU-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21293
IRF5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.2094
UM-UC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21293
HPAFII	DepMap CRISPR Gene Dependency	1.0	2.29852
PBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8762
GSE169334,GSE169336_0_v_1_cisplatin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
intracellular organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
HCC202	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.915738
FOSL2::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.816
cellular_component	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
GSE149096_4_v_3_ascl1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.27855
EFM-19	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.42375
BARHL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.4643
ZNF766	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.0276
EFM-192C	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.915073
MAX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.6039
NFIX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.9371
DETROIT 562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.956089
ETV5::FOXO1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.435
DAN-G	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.956089
OCUBM	DepMap CRISPR Gene Dependency	1.0	3.18559
NCCMPNST2C1	DepMap CRISPR Gene Dependency	1.0	2.18921
intracellular part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
MKN-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.839554
TAL1::TCF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.1818
HCC78	DepMap CRISPR Gene Dependency	1.0	3.09789
FOXP2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.4073
COLO 792	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.926401
protein complex	GO Cellular Component Annotations 2015	1.0	null
ZNF175	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.4167
A2058	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.82461
MAX::MYC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.2857
TCF12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.5902
496100416_FWM_dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.36041
SOX10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.4238
BBSome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.833
RBPJ	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.617
OVCAR433	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.956089
FOXF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.0976
cell part	GO Cellular Component Annotations 2015	1.0	null
GSE206516,GSE206518_3_v_4_ptdss2_human	RummaGEO Gene Perturbation Signatures	1.0	null
FOXK2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.8023
OVCA 420	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.30797
NCI-H2452	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.71371
ASCL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	84.2195
D542MG	DepMap CRISPR Gene Dependency	1.0	2.81277
SOX8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.512
Keratin-associated protein	InterPro Predicted Protein Domain Annotations	1.0	null
OVCA 432	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.852559
ZSCAN4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.7021
SK-MEL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.54995
PPARA::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.5267
BARX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.1761
JDP2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.9047
FOXP3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.5173
OAW42	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.926401
OCIAML3	DepMap CRISPR Gene Dependency	1.0	3.08664
ERF::SREBF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.0747
FOXG1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.1389
HESX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.7324
496100367_FWM_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.68243
FOXO1::ELK3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.6057
COV504	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20679
GID complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.242
PA-TU-8988T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.940675
KE-37	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.0433
TK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.839554
KARPAS-422	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.0433
PGR	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.6714
MC-CAR	COSMIC Cell Line Gene Mutation Profiles	1.0	null
intracellular organelle part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
PL45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.54752
HCC1419	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.44892
RMG-I	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.98101
OVCA420	COSMIC Cell Line Gene CNV Profiles	1.0	2.11435
NB69	DepMap CRISPR Gene Dependency	1.0	2.92653
HCC1171	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.891232
496100469_TCx_no dementia_TBI_89_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.99952
intracellular	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
EHF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.078
MYF6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.72
PANC 05.04	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00221
MEF2B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.4642
496100472_PCx_possible Alzheimer's disease_TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.25669
FOXK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.8277
NCI-H1792	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.23486
ERF::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.0685
GSE169590_6_v_1_rptor_human	RummaGEO Gene Perturbation Signatures	-1.0	null
ETV1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.7351
FOXP4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.7103
AU565	COSMIC Cell Line Gene CNV Profiles	1.0	2.11435
NB10	DepMap CRISPR Gene Dependency	1.0	2.74439
FOXO4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.9833
IRF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	88.73
BICR 31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.849395
TRAPP complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.064
A549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21293
SU-DHL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.41078
SOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.1037
LCLC-97TM1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16803
NCI-H2795	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.62871
NR3C2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.6377
JHH-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.839554
GSE206516,GSE206518_5_v_4_ptdss2_human	RummaGEO Gene Perturbation Signatures	1.0	null
OVCA420	DepMap CRISPR Gene Dependency	1.0	2.35151
496100418_TCx_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	7.65926
EFM-192B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04654
KP-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.851896
496100458_FWM_no dementia_no TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.13487
NCI-H1693	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.27855
GSE178532_2_v_0_cisplatin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
COLO 857	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.82461
GSE192860_0_v_1_trifluoperazine_human	RummaGEO Drug Perturbation Signatures	1.0	null
intracellular part	GO Cellular Component Annotations 2015	1.0	null
FOXA1-33576154-HUMAN-LUNG-PROSTATECANCER	ChEA Transcription Factor Targets 2022	1.0	null
BLOC complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.053
ZNF76	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.259
Intraciliary transport particle A	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.961
FOSL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.503
NR2F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.691
MXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.1354
MDA-MB-453	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.84038
ETS2	MotifMap Predicted Transcription Factor Targets	1.0	null
intracellular non-membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
SOX13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.243
CAPAN-1	COSMIC Cell Line Gene CNV Profiles	1.0	2.11435
NALM-6	COSMIC Cell Line Gene Mutation Profiles	1.0	null
NCIH2004RT	DepMap CRISPR Gene Dependency	1.0	2.00912
HCC70	DepMap CRISPR Gene Dependency	1.0	2.30107
NFATC3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.533
KELLY	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.36874
protein complex	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
FOXO6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.2781
ELF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.9301
skin	GTEx Tissue Gene Expression Profiles	1.0	2.18987
NRL	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.507
NR3C1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.5405
small intestine	HPA Tissue Protein Expression Profiles	1.0	1.04592
TC-71	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.44892
Keratinization	Reactome Pathways 2024	1.0	null
TYK-NU.CP-R	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.28781
FLI1::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.1514
KPNYS	DepMap CRISPR Gene Dependency	1.0	2.13108
GABPA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.9845
OE33	DepMap CRISPR Gene Dependency	1.0	3.11338
CW-2	COSMIC Cell Line Gene Mutation Profiles	1.0	null
MELHO	DepMap CRISPR Gene Dependency	1.0	2.27449
mpkCCD cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.659
JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.2185
HEP G2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.901119
MM485	DepMap CRISPR Gene Dependency	1.0	2.25049
U2904	DepMap CRISPR Gene Dependency	1.0	2.14863
CHP-212	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.48197
COLO 699	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08519
496100466_PCx_probable Alzheimer's disease_no TBI_89_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.08771
MDA-MB-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.69719
NR2C1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.7684
FOXO1::FLI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.3877
PMC8684775-CTM2-11-e640-s002.xlsx-Sheet1-Table_S3_MAF_file_of_the_CCS_samples_MAF	Rummagene Transcription Factor Associations 2026	1.0	null
MHH-NB-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.924963
urinary bladder	HPA Tissue Protein Expression Profiles	1.0	1.04592
697	DepMap CRISPR Gene Dependency	1.0	2.28804
SNAI2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.409
496100420_PCx_probable Alzheimer's disease_no TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.69967
GSE206516,GSE206518_1_v_7_ptdss2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
MHH-ES-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.04257
OVCAR-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.873776
ZEB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.1926
LBP-1	MotifMap Predicted Transcription Factor Targets	1.0	null
HCT15	DepMap CRISPR Gene Dependency	1.0	2.74428
ETV5::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.4083
MOG-G-UVW	COSMIC Cell Line Gene Mutation Profiles	1.0	null
IRF9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.0557
SK-BR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.19301
FOXJ2::ELF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.5175
IKZF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.9635
COR-L88	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.24676
RUNX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.1144
496100460_TCx_possible Alzheimer's disease_TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.60397
NPHP complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.079
PMC4390530-NIHMS667786-supplement-1.xlsx-Sheet1-Supplementary_Table_2_Genes_closest_to_AR_induced_ASH2L_peaks_AR	Rummagene Transcription Factor Associations 2026	1.0	null
NH12	DepMap CRISPR Gene Dependency	1.0	2.2876
Intraciliary transport particle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.884
PITX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.8878
OS252	DepMap CRISPR Gene Dependency	1.0	2.36249
rectum	HPA Tissue Protein Expression Profiles	1.0	1.04592
NO-10	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.0433
HCC1599	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.67852
cytoskeletal part	GO Cellular Component Annotations 2015	1.0	null
BLOC-1 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.153
NFIL3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.6537
Joubert syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.065
NR4A1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.4344
cytoskeleton	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
organelle part	GO Cellular Component Annotations 2015	1.0	null
DOR 13	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.56671
NCI-H1299	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.915738
ZFP57	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.1352
ZR-75-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.56671
HCC1428	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.3288
SREBF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	72.5531
FOXS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.607
ERF::FOXO1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.3967
SNU1077	DepMap CRISPR Gene Dependency	1.0	2.05513
MAFA	MotifMap Predicted Transcription Factor Targets	1.0	null
Developmental Biology	Reactome Pathways 2024	1.0	null
SUIT2	DepMap CRISPR Gene Dependency	1.0	2.11297
FOXO1::ELK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.2741
cellular_component	GO Cellular Component Annotations 2015	1.0	null
496100426_PCx_no dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.50086
FOXO1::ELF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.2833
ZNF189	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.0173
NR4A2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.7887
GSE206516,GSE206518_0_v_4_ptdss2_human	RummaGEO Gene Perturbation Signatures	1.0	null
SNU-638	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09133
ZIM3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.1452
HN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.940675
SOX10	MotifMap Predicted Transcription Factor Targets	1.0	null
HCC1263	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20679
LN382	DepMap CRISPR Gene Dependency	1.0	2.03438
MMAC	DepMap CRISPR Gene Dependency	1.0	2.18521
cell	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
NCI-H920	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.987625
PLC/PRF/5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05774
CFPAC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.04971
BT-549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20679
ETV2::HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.43
FOSB::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.8731
FOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.5427
HNF4, COUP	MotifMap Predicted Transcription Factor Targets	1.0	null
ASPC1	DepMap CRISPR Gene Dependency	1.0	2.52591
SW1990	DepMap CRISPR Gene Dependency	1.0	2.10506
SU-DHL-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09133
FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.0984
organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
496100421_PCx_probable Alzheimer's disease_TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.40625
keratin filament	GO Cellular Component Annotations 2015	1.0	null
CAPAN1	DepMap CRISPR Gene Dependency	1.0	2.58114
FIGLA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.3014
HT-115	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.978506
GSE225900_1_v_0_hsdl2_human	RummaGEO Gene Perturbation Signatures	1.0	null
AP-2rep	MotifMap Predicted Transcription Factor Targets	1.0	null
NCIH1993	DepMap CRISPR Gene Dependency	1.0	2.20924
intermediate filament	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
FOXN3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.4589
COLO 680N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.4217
TAL1	MotifMap Predicted Transcription Factor Targets	1.0	null
TGBC1TKB	DepMap CRISPR Gene Dependency	1.0	2.25705
organelle part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
HCC515	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.915738
TCF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.9809
NFYC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.3553
KPL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.36958
ZNF184	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.3055
HUP-T3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29897
NUGC-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.51235
PFEIFFER	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01958
A-673	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.75436
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.27855
keratin filament	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
non-membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
intermediate filament	GO Cellular Component Annotations 2015	1.0	null
JHH-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.30059
JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.7921
G111	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.838332
496100459_PCx_no dementia_no TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.35003
SOX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.9026
CAPAN-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.52328
SOX18	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.046
Neuro D	MotifMap Predicted Transcription Factor Targets	1.0	null
ZBTB7C	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.2075
FOXA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.8976
PSS008	DepMap CRISPR Gene Dependency	1.0	2.71709
NO11	DepMap CRISPR Gene Dependency	1.0	2.26368
WSU-NHL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.36496
HCC1143	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.44892
intermediate filament cytoskeleton	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
TCF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.6277
ZIC5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	61.6197
NCI-H596	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.995049
adipose tissue	GTEx Tissue Gene Expression Profiles	1.0	1.08736
OVKATE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.71082
BACH2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.3824
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.851896
SNU668	DepMap CRISPR Gene Dependency	1.0	2.12192
MDA-MB-468	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.851896
SHOX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.0819
KYAE-1	COSMIC Cell Line Gene CNV Profiles	1.0	2.11435
EFM-192A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12346
OCILY19	DepMap CRISPR Gene Dependency	1.0	3.20804
HEY	DepMap CRISPR Gene Dependency	1.0	3.0791
Usher syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.066
PATU8988T	DepMap CRISPR Gene Dependency	1.0	3.23962
MSC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.4238
HCC2218	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.68225
3-M syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.644
496100419_TCx_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	6.55771
NIH:OVCAR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28811
GSE102870_11_v_0_nr1h4_human	RummaGEO Gene Perturbation Signatures	-1.0	null
NFIC::TLX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.9375
gallbladder	HPA Tissue Protein Expression Profiles	1.0	1.04592
NFIB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.0779
PMC12783921-MCO2-7-e70584-s001.pdf-3-CENPB_CENPB	Rummagene Transcription Factor Associations 2026	1.0	null
macromolecular complex	GO Cellular Component Annotations 2015	1.0	null
22RV1	DepMap CRISPR Gene Dependency	1.0	2.66835
COV362	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.3288
SK-MEL-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16918
JEKO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.37024
OCIM2	DepMap CRISPR Gene Dependency	1.0	2.24943
SW626	DepMap CRISPR Gene Dependency	1.0	2.77198
COLO 678	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.78685
496100391_FWM_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.1708
NR1H2::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.68
NCI-N87	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.4505
OKAJIMA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09028
TCF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.1043
NFYA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.1519
496100409_FWM_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.07917
LB1047RCC	DepMap CRISPR Gene Dependency	1.0	2.21149
Ciliary base	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.008
HUPT4	DepMap CRISPR Gene Dependency	1.0	3.13561
FOXD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.05
NCI-H2452	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.0433
Collecting duct cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.317
intracellular organelle part	GO Cellular Component Annotations 2015	1.0	null
M059K	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.859563
CPC-N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.26033
NCI-H2198	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20679
ZSCAN16	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.2052
FOXL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.2849
ETV2::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.5801
cytoskeletal part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
ZIC1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	61.1075
FOXP1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.0581
cell part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
3M complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.8
C32	DepMap CRISPR Gene Dependency	1.0	2.07334
EVSA-T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.893643
duodenum	HPA Tissue Protein Expression Profiles	1.0	1.04592
AM38	DepMap CRISPR Gene Dependency	1.0	2.4876
SRY	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.7143
Intraciliary transport particle B	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.009
HEC-1-A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02187
FOXA3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.4473
OVISE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01618
HCC70	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02071
ZNF582	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	70.2969
FOSL2::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.6845
HCC1011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.995667
macromolecular complex	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
JIMT-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.58317
ZNF680	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.0963
HSC39	DepMap CRISPR Gene Dependency	1.0	3.15056
ZNF341	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.4071
NCIH1437	DepMap CRISPR Gene Dependency	1.0	2.20428
PC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.995049
RXRB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.4921