association dataset threshold value standardized value III, left, lateral hemisphere Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.48477 GSE131377_4_v_2_spocd1_mouse RummaGEO Gene Perturbation Signatures -1.0 null GSE118794_5_v_1_zmynd8_mouse RummaGEO Gene Perturbation Signatures 1.0 null Raphe nucleus TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.634 Myopia DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.294 FOSL2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 38.8159 PMC12019336-41467_2025_58868_MOESM5_ESM.xlsx-Open_peaks_IKAROS_WT-Unnamed_5_IKZF1 Rummagene Transcription Factor Associations 2026 1.0 null III, left, paravermis Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.855958 RORB JASPAR Predicted Human Transcription Factor Targets 2025 1.0 23.5532 Msgn1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 20.5627 I-II Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 2.76494 Sexual health disorder DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.978 PMC11193738-41467_2024_48647_MOESM8_ESM.xlsx-Data_S5-Data_S5_HNF4A-bound_gene_targets_identified_from_ChIP-Seq_in_hepatic_cells_D8_Hep_and_HepG2_cells_HNF4A Rummagene Transcription Factor Associations 2026 1.0 null 496100431_FWM_no dementia_TBI_95-99_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 6.21105 MICAL3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 4.03298 laterodorsal part of putamen Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.20275 SG in caudal entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.86656 Ppara JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 16.3239 JUND_CH12.LX_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE86507,GSE86509_7_v_5_hoxb7_mouse RummaGEO Gene Perturbation Signatures 1.0 null Esophagus - Gastroesophageal Junction GTEx Tissue Gene Expression Profiles 2023 1.0 7.14442 CTCF_cortical plate_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null prostate GTEx Tissue Gene Expression Profiles 1.0 0.997486 CTCF_ES-Bruce4_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null ATOH7 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 18.061 NFATC4 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 30.1134 OTX2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 16.7013 TGFBR2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.91576 DDX27 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.76455 GSE88819_3_v_4_tug1_mouse RummaGEO Gene Perturbation Signatures -1.0 null CTCF_bone marrow_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null BAD CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.95795 Pou5f1::Sox2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 32.0293 ZNF425 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.99428 upper limb region of M1 Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.21437 TGIF1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 42.7579 PMC7498599-41467_2020_18508_MOESM11_ESM.xlsx-Mor_CTCF-Unnamed_2_CTCF Rummagene Transcription Factor Associations 2026 1.0 null molecular layer of caudal subiculum Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.90595 TBX20 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 21.8144 NUMBL CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.33373 TBR1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 19.6814 NR3C2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 43.3974 ventral tegmental area Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.844678 GSE112760,GSE112767_1_v_5_ddx6_mouse RummaGEO Gene Perturbation Signatures -1.0 null posterior group of nuclei, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.882039 RARA CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.96109 TERF2IP CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.61352 POU2F2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 24.4645 Glutathione hydrolase complex COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.85 GSE104508_0_v_1_dnmt3a_mouse RummaGEO Gene Perturbation Signatures -1.0 null TBX1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 25.4434 Hnf1a JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 25.2802 Bhlha15 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 23.8133 IKZF5 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.22616 GSE93918_1_v_3_clozapine_mouse RummaGEO Drug Perturbation Signatures 1.0 null RAD18 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.99636 Weight GWAS Catalog SNP-Phenotype Associations 2025 1.0 0.539794 E2F4 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 15.5727 CTCF_testis_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null ZC3H11A_CH12.LX_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null TAC1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.01718 CD37 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.77802 RNASE6 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.47218 SCAI CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.84631 ESRRA JASPAR Predicted Human Transcription Factor Targets 2025 1.0 19.5025 TRIM22 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.82309 POU3F1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 19.4357 PSAT1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.25865 SP in ventrolateral prefrontal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.33492 NR2C1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 14.7684 EIF4EBP2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.82517 CLPP_KO_GSE40207_396_mouse_Muscle GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null GSE129241_1_v_0_valproic acid_human RummaGEO Drug Perturbation Signatures 1.0 null SG in inferolateral temporal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 2.41546 PMC7498599-41467_2020_18508_MOESM11_ESM.xlsx-8cell_CTCF-Unnamed_1_CTCF Rummagene Transcription Factor Associations 2026 1.0 null CDX2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.29339 paracentral lobule, posterior part, right, lateral bank of gyrus Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.60928 MAX JASPAR Predicted Human Transcription Factor Targets 2025 1.0 19.6726 TMEM87A CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.54673 VZ in midlateral extrastriate cortex (area 19) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.0615 TP63 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 30.7302 WDR89 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.19429 PIAS2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.78495 496100468_PCx_no dementia_TBI_88_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 7.63136 precommissural nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.01556 GSTCD CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.97284 TNKS1BP1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.67954 UBE2R2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.36596 ASCL4 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.82826 Cutaneous fibrous histiocytoma DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.175 PMC9999213-mmc1.xlsx-DEGs_vs_2D-DEA_NB_MSC_EC_CSc_vs_NB_2D_MSC Rummagene Transcription Factor Associations 2026 1.0 null GSE65617_2_v_3_aire_mouse RummaGEO Gene Perturbation Signatures -1.0 null III Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.981959 RAGE_knockout_268_GDS3755 GEO Signatures of Differentially Expressed Genes for Kinase Perturbations 1.0 1.8235 TBX15 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.91655 CTCF ENCODE Transcription Factor Targets 1.0 null HNRNPM CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.44762 IZ in caudal perirhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.77355 LTBR_INHIBITION - 3 Days_GDS2005_730_mouse_Lymph nodes (MG-430B) GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null MGA JASPAR Predicted Human Transcription Factor Targets 2025 1.0 23.7228 inner CP in subgenual (subcallosal) cingulate cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.25131 laterorostral part of entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.06117 PMC7532671-thnov10p10957s2.xlsx-Table_S6A-Table_S6A_Differentially_expressed_genes_DEGs_in_DDX5_KD_versus_WT_cells_AR Rummagene Transcription Factor Associations 2026 1.0 null JUND ENCODE Transcription Factor Targets 1.0 null Stat6 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 54.7997 VZ in medial temporal-occipital cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.10407 ETV1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 31.5947 CCDC43 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.04891 corpus callosum Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.35129 TEAD4 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 17.1456 COL9A1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.07272 Mean spheric corpuscular volume GWAS Catalog SNP-Phenotype Associations 2025 1.0 0.852288 central nucleus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.878006 MGA CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.14485 dorsal raphe nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.828319 medial subdivision of area 10 Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -2.57798 subgenual (subcallosal) division of MFC (area 25) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.31498 inner CP in temporal polar cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.92928 NR1D2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 34.2312 Nkx3-1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 16.9119 IX Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.0569 IZ in dorsolateral prefrontal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.15358 MAPK7 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.4306 Rxra JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 45.7677 PMC6499311-supp_gr.243345.118_Supplemental_Table_S8.xlsx-S8B_Het1A-HNF4A_2d_5x_open-Nearest_Ensembl_HNF4A Rummagene Transcription Factor Associations 2026 1.0 null Brain morphology (MOSTest) GWAS Catalog SNP-Phenotype Associations 2025 1.0 1.01549 RNASET2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.35287 SG in primary auditory cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.35417 ZNF324 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 32.9024 FOS::JUND JASPAR Predicted Human Transcription Factor Targets 2025 1.0 25.6884 Heschl's gyrus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.883925 NEUROD1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 42.0083 choroid plexus of the fourth ventricle Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.01467 DAG1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.11101 PMC10335698-pone.0285806.s007.xlsx-DMKN-shRNA_KD_Vs_ShSrc-Unnamed_5_AR Rummagene Transcription Factor Associations 2026 1.0 null Elf5 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 24.2488 MCCC1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.69236 MZ in caudal perirhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.53677 HSF2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.38398 SAV1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.1199 GEN1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.54516 QKI CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.83771 IZ in posteroinferior (ventral) parietal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.94754 lateral nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.960084 PMC7498599-41467_2020_18508_MOESM11_ESM.xlsx-GV_RFX-Unnamed_2_RFX1 Rummagene Transcription Factor Associations 2026 1.0 null lateral hypothalamic area, tuberal region, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.16017 area postrema Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.893048 MSTN_DEPLETION_GDS3637_94_mouse_mature skeletal muscle GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null 496100418_TCx_no dementia_TBI_85_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.38755 PMC10123531-NIHMS1874945-supplement-Table_S7.xlsx-SOX17_BCAT_4TCFKO_peaks-Gene_Name_SOX17 Rummagene Transcription Factor Associations 2026 1.0 null PMC10709143-41556_2023_1271_MOESM9_ESM.xls-Up_in_PAX7--Target_name_PAX7 Rummagene Transcription Factor Associations 2026 1.0 null IZ in lateral temporal-occipital cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.985289 GSE199092_3_v_0_ddx5_human RummaGEO Gene Perturbation Signatures -1.0 null paracentral lobule, posterior part, left, lateral bank of gyrus Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.98717 inferior frontal gyrus, orbital part, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.26631 NEUROG2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 53.0462 APOBEC3D CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.37142 medial subdivision of central nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.16099 ZC3H11A ENCODE Transcription Factor Targets 1.0 null MYLK_knockdown_48_GSE14525 GEO Signatures of Differentially Expressed Genes for Kinase Perturbations -1.0 -1.31392 VZ in subcallosal region Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.08715 lateral tuberal nuclei Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.88127 VZ in hypothalamic portion Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.27891 OSR2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 28.8762 H3K27me3_CH12.LX_mm9_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE141328_3_v_2_rock2_mouse RummaGEO Gene Perturbation Signatures 1.0 null Psychosexual disorder DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 2.109 PRODH CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.3307 Yolk COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 1.433 RFX1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 28.349 medial geniculate complex, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.20385 496100503_HIP_probable Alzheimer's disease_no TBI_85_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 4.22964 IGBP1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.63573 GSE164483_2_v_0_venetoclax_mouse RummaGEO Drug Perturbation Signatures -1.0 null Mean corpuscular volume GWAS Catalog SNP-Phenotype Associations 2025 1.0 0.839794 SH3BGRL2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.52884 ZNF675 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 38.148 RPS6KA3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 4.02518 MED29 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.14503 H3K4me1_megakaryocyte_mm9_2 ENCODE Histone Modification Site Profiles 1.0 null PPIB CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.25457 SP in subgenual (subcallosal) cingulate cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 2.07779 substantia nigra, pars reticulata, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.11361 TWIST1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 40.2779 FOXO1::ELK3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 48.872 KBTBD2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.94541 anterior orbital gyrus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.90013 MGA::EVX1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 21.3427 VZ in superolateral temporal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.44337 FOXO1::ELF1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 47.4308 CTCF_C2C12_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null NELFE_CH12.LX_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_G1E_mm9_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null IKZF1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 37.0246 RARA::RXRG JASPAR Predicted Human Transcription Factor Targets 2025 1.0 42.2225 EMX1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.87629 bladder GTEx Tissue Gene Expression Profiles 1.0 2.18572 H4C11 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.85171 BHLHA15 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 19.7519 FOS::JUNB JASPAR Predicted Human Transcription Factor Targets 2025 1.0 18.9975 PMC6499311-supp_gr.243345.118_Supplemental_Table_S8.xlsx-S8B_Het1A-HNF4A_2d_5x_open-Gene_Name_HNF4A Rummagene Transcription Factor Associations 2026 1.0 null H3K4me3_G1E-ER4_mm9_3 ENCODE Histone Modification Site Profiles 1.0 null Serous gland TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.308 CHRNB1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.8056 TFEC JASPAR Predicted Human Transcription Factor Targets 2025 1.0 19.3291 Hip circumference adjusted for BMI GWAS Catalog SNP-Phenotype Associations 2025 1.0 0.952288 ZC3H11A_ES-E14_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE108326_1_v_0_doxycycline_mouse RummaGEO Drug Perturbation Signatures -1.0 null RNF13 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.57431 TEAD1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 19.002 FOXK2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 16.1162 SLC22A17 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.64929 Nfatc2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 24.9324 dorsorostral division of MFC (area 32) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.23102 GSE181461_1_v_4_trim28_human RummaGEO Gene Perturbation Signatures 1.0 null ERF::FOXO1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 51.796 tuberomammillary nucleus, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.14665 SMC3_MEL cell line_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_kidney_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CREB3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 15.1858 H4C3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.27793 CELSR2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.58066 H3K4me1_megakaryocyte_mm9_3 ENCODE Histone Modification Site Profiles 1.0 null ING2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.35527 TBX5 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 32.4689 CREB1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 16.8499 PMC12048643-44318_2025_409_MOESM3_ESM.xlsx-regulonTargets-HNF4A_HNF4A Rummagene Transcription Factor Associations 2026 1.0 null CTCF_CH12.LX_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null inner SZ in superolateral temporal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.91893 TCF15 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.74304 TGIF2LX JASPAR Predicted Human Transcription Factor Targets 2025 1.0 37.7807 POLR2AphosphoS5_MEL cell line_mm9_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null RNF146 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.71855 IZ in dorsomedial frontal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.02558 QPRT CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.24094 TBX15 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 37.4399 TRAPPC2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.17918 basal nucleus of meynert, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.866291 CTCF_spleen_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null interstitial nucleus of Cajal, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.87735 ZNF517 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.43137 UTP14C CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.49516 medial orbital gyrus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.922463 CTCF_heart_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null LDB1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.27646 RAB13 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.92351 PEX3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 4.33031 GSE147056_0_v_1_actl6b_mouse RummaGEO Gene Perturbation Signatures -1.0 null lateral habenular nucleus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -2.17886 SG in dorsomedial parietal cortex (area 7m) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 2.22232 FOS JASPAR Predicted Human Transcription Factor Targets 2025 1.0 26.3526 TBX2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 24.1036 CTCF_CH12.LX_mm9_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null Uterus GTEx Tissue Gene Expression Profiles 2023 1.0 0.852856 ONECUT2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.76787 Atoh1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 29.5693 inferior frontal gyrus, opercular part, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.03903 SMC3 ENCODE Transcription Factor Targets 1.0 null Adult body size GWAS Catalog SNP-Phenotype Associations 2025 1.0 1.10969 HEY2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.26964 ETV5::FOXO1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 33.0138 EP300_heart_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null H3K27me3_G1E_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null RARA::RXRA JASPAR Predicted Human Transcription Factor Targets 2025 1.0 33.9565 outer portion of medial ganglionic eminence Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.1765 GSE138672_4_v_3_rabgef1_mouse RummaGEO Gene Perturbation Signatures -1.0 null HNRNPA0 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.79512 PITX2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.81416 Brain morphology (min-P) GWAS Catalog SNP-Phenotype Associations 2025 1.0 0.822185 frontal pole, right, inferior aspect Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.943763 RAD21_MEL cell line_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE202434,GSE202438_10_v_14_talazoparib_human RummaGEO Drug Perturbation Signatures 1.0 null MSTN_KO_GDS3637_439_mouse_muscle GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null TTLL4 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 4.05207 DOK4 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.96344 Cortical surface area (MOSTest) GWAS Catalog SNP-Phenotype Associations 2025 1.0 1.2699 CTCF_G1E-ER4_mm9_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null parasubicular cortex (parasubiculum) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.908617 TRPC4AP CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.2479 VI, right, paravermis Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.13727 SELENOV CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.8657 Ovum TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.733 outer CP in (rostral) midinferior temporal cortex (area 36) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.94638 CTCF_G1E-ER4_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE88819_3_v_8_tug1_mouse RummaGEO Gene Perturbation Signatures -1.0 null ELK4 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.42702 SP in entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.92761 IV Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.3528 AKT1_OE_GDS2308_508_mouse_heart GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null transient Purkinje cell clusters Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.882563 CZIB CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.46551 Hic1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 22.7708 temporal pole, right, medial aspect Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.10958 TRIM24 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.7488 GSE235234_2_v_3_corticosterone_mouse RummaGEO Drug Perturbation Signatures -1.0 null V, left, paravermis Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.927643 abducens nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.59656 RELB JASPAR Predicted Human Transcription Factor Targets 2025 1.0 21.9723 RAD21_CH12.LX_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Cortical surface area (min-P) GWAS Catalog SNP-Phenotype Associations 2025 1.0 0.730103 globose nucleus, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.11165 precentral gyrus, right, bank of the central sulcus Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.951317 Ventral pallidus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.943679 ELK1::HOXB13 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 17.5357 VIIIB Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.69936 parataenial nucleus of thalamus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.975367 CTCF_bone marrow macrophage_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CIPC CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.05607 POU3F2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 21.8633 PMC7498599-41467_2020_18508_MOESM11_ESM.xlsx-Mor_CTCF-Unnamed_3_CTCF Rummagene Transcription Factor Associations 2026 1.0 null CEL CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.09549 EOMES JASPAR Predicted Human Transcription Factor Targets 2025 1.0 19.6395 bed nucleus of stria terminalis, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.838385 caudal subdivision of paraventricular nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.939954 RPL22 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.92319 VZ in midcingulate neocortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.13096 periventricular nucleus, preoptic portion Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.859128 MSL1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.49014 BNC2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 22.8565 H3K4me1_testis_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null SRSF6 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.06456 stratum radiatum of caudal CA1 Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.68496 transverse gyri, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.886339 DDX42 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.37235 LIME1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.68582 E2F4 ENCODE Transcription Factor Targets 1.0 null long insular gyri, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.07919 CTCF_cerebellum_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null 496100606_PCx_possible Alzheimer's disease_no TBI_90-94_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 7.5467 ST6GALNAC4 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.05547 PKNOX1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 20.3453 EDA2R CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.54459 CTCF_embryonic fibroblast_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_liver_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null RAD21 ENCODE Transcription Factor Targets 1.0 null VI Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.54599 paracentral lobule, posterior part, right, bank of cingulate sulcus Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.87119 NELFE ENCODE Transcription Factor Targets 1.0 null LY6E CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.92796 GSE130081,GSE130082_0_v_1_neil2_mouse RummaGEO Gene Perturbation Signatures 1.0 null PPCS CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.89705 principal sensory nucleus of trigeminal nerve Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.918338 RARA JASPAR Predicted Human Transcription Factor Targets 2025 1.0 69.3631 Prdm4 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 22.083 IZ in dorsomedial parietal cortex (area 7m) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.32268 GSE151494_10_v_3_nrp1_mouse RummaGEO Gene Perturbation Signatures 1.0 null III, right, paravermis Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.919453 CTCF_MEL cell line_mm9_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null PMC7498599-41467_2020_18508_MOESM11_ESM.xlsx-GV_RFX-Unnamed_3_RFX1 Rummagene Transcription Factor Associations 2026 1.0 null H3K27me3_megakaryocyte_mm9_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null ESRRB JASPAR Predicted Human Transcription Factor Targets 2025 1.0 20.6577 ZNF250 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.75837 SBF1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.80218 VIIB, left, paravermis Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.937183 central nucleus of inferior colliculus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.04709 PMC7498599-41467_2020_18508_MOESM11_ESM.xlsx-8cell_CTCF-Unnamed_2_CTCF Rummagene Transcription Factor Associations 2026 1.0 null VIIB, left, lateral hemisphere Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.902505 Pole plasm COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 1.092 Yolk granule COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 1.475 RHOXF1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.96942 EP300 ENCODE Transcription Factor Targets 1.0 null Runx1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 18.3335 ELAVL1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.97737 chr1_22964597_A_G_b38 GTEx eQTL 2025 1.0 5.75164 GSE202434,GSE202438_2_v_14_talazoparib_human RummaGEO Drug Perturbation Signatures 1.0 null TAL1::TCF3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 20.3182 precentral gyrus, right, inferior lateral aspect of gyrus Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.02699 layer V of area 35c Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.939746 PBX3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 28.9727 VIIIB, left, paravermis Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.22499 F3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.14268 GSE88819_5_v_9_tug1_mouse RummaGEO Gene Perturbation Signatures 1.0 null ZBTB26 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 18.8562 occipital pole, left, lateral aspect Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.59778 Genital pore TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.539 EBF1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 42.3207 ZNF813 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.42297 GFI1B CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.92993 H3K27me3_megakaryocyte_mm9_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE109140_0_v_3_valproic acid_human RummaGEO Drug Perturbation Signatures -1.0 null CTCF_MEL cell line_mm9_6 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE202434,GSE202438_7_v_14_talazoparib_human RummaGEO Drug Perturbation Signatures 1.0 null X, left, paravermis Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.05216 H3K27me3_CH12.LX_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null H3K4me1_ES-E14_mm9_2 ENCODE Histone Modification Site Profiles 1.0 null Stat5a::Stat5b JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 24.6297 NUCB2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.37619 FOXI1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 16.9354 FBXW11 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.68006 midbrain reticular formation Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.11353 CTCF_G1E_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Stat4 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 38.8312 GSE88819_3_v_10_tug1_mouse RummaGEO Gene Perturbation Signatures -1.0 null PMC9327205-11658_2022_358_MOESM7_ESM.xlsx-K562-BP1-Symbol_1_DLX4 Rummagene Transcription Factor Associations 2026 1.0 null GSE100528_1_v_0_mettl3_mouse RummaGEO Gene Perturbation Signatures -1.0 null SPATA2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.99387 VIIIB, right, paravermis Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.07069 IRF3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 4.26843 Crus II, right, paravermis Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.2568 periaqueductal gray substance, ventral portion Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.989821 PEX11B CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.5578 VI, left, paravermis Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.936198 Gfi1b JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 25.9858 medial superior olive Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.956996 ALMS1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.21399 CTCF_MEL cell line_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null DACH1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.25179 fusiform gyrus, right, bank of cos Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.00709 MCM3AP CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.41451 CTCF_MEL cell line_mm9_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null CLPP_KO_GSE40207_380_mouse_muscle GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null YTHDC2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.42438 KDSR CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.94234 DDX3X CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.86359 PMC10289499-ms9-85-2662-s001.xlsx-Sheet2-PGR_PGR Rummagene Transcription Factor Associations 2026 1.0 null CPNE1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.786 superior frontal gyrus, right, medial bank of gyrus Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.13434 FKBP1B CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.65219 ZNF154 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.65156 FOXO1::FLI1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 59.25 RFX5 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 17.539 layer VI of area 35c Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.859267 pyramidal layer of caudal subiculum Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.978524 pyrazinamide_mus musculus_gpl6246_gse48027 GEO Signatures of Differentially Expressed Genes for Small Molecules -1.0 null VIIB Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.998394 GSE147056_3_v_1_actl6b_mouse RummaGEO Gene Perturbation Signatures -1.0 null COPI vesicle coat COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.917 MSANTD4 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.83297 ETV2::FIGLA JASPAR Predicted Human Transcription Factor Targets 2025 1.0 30.6782 Perturb_15777_KO_Nmnat1_SRP360949 PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations 1.0 9.01791 A2BAR_Deficiency_GDS3662_520_mouse_Heart GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null NEUROG2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.19177 lateral orbital frontal cortex (area 12/47) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.15991 E2F3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 27.532 inner portion of medial ganglionic eminence Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.871055 ZC3H11A_MEL cell line_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null USF1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 22.3604 VIIIA, right, lateral hemisphere Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.853093 SNAI3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 20.0726 medioventral part of putamen Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.58293 FOXP3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 14.8751 GADD45A CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.72031 RBM10 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.94831 AADAT CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.33298 NR3C1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 43.5714 COPI-coated vesicle membrane COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.914 PDXP CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.2125 SORD CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.86667 gigantocellular reticular nuclei Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.863462 X Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.95249 VIIAf Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.5017 Dlx2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 17.4894 496100419_TCx_no dementia_TBI_78_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.02667 VIIB, right, paravermis Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.951847 SCRT1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 33.4895 ESRRG_Deficiency_GDS2811_637_mouse_Fetal heart - Heterozygous null mutant GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null TDRD12 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.98016 ZNF644 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.46021 SHISA8 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.19031 EEF1AKMT1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.87374 CTCF_small intestine_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null GLI1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.82064 CTCF_brain_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE182179_0_v_4_kdsr_human RummaGEO Gene Perturbation Signatures 1.0 null H3C1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.69885 Mafg JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 23.1938 Cortical thickness (min-P) GWAS Catalog SNP-Phenotype Associations 2025 1.0 0.752288 FOXJ2::ELF1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 28.2946 PMC7498599-41467_2020_18508_MOESM11_ESM.xlsx-GV_RFX-Unnamed_1_RFX1 Rummagene Transcription Factor Associations 2026 1.0 null IGFBP1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.60842 VZ in thalamic region Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.06707 SMC3_CH12.LX_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE174406_2_v_1_lin28b_mouse RummaGEO Gene Perturbation Signatures 1.0 null CTCF_MEL cell line_mm9_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null FLI1::FOXI1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 43.6365 TBX18 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 19.1959 PMC9380317-13045_2022_1327_MOESM3_ESM.xlsx-Table_S4-Table_S4_Top_500_differentially_modified_gene_bodies_between_AA_and_EA_patients_with_MM_TEAD1 Rummagene Transcription Factor Associations 2026 1.0 null PMC10011543-41419_2023_5707_MOESM4_ESM.xlsx-genes_with_unique_SNP-F5-Thygro-r__CIC-2n_h-r_CIC Rummagene Transcription Factor Associations 2026 1.0 null SPIC JASPAR Predicted Human Transcription Factor Targets 2025 1.0 29.7241 CTCF_CH12.LX_mm9_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null VMA21 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.84069 VI, left, lateral hemisphere Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.25991 VZ in caudal entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.43061 HDGFL2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.24286 TFAP4::ETV1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 45.2247 MRPL44 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.53121 Nkx3-2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 19.716 MAGEF1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.64712 Nr1h4 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 20.5285 central nuclear group Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.5726 GSE112860_9_v_6_prdm16_mouse RummaGEO Gene Perturbation Signatures 1.0 null RFX2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 17.5654 RAD21_MEL cell line_mm9_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null MEOX1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.80627 outer SZ in midlateral temporal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -2.15138 RORA CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.2472 ZC3H11C CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.18567 MAP1LC3A CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.4279 layer II of caudal entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.21353 TBX3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 19.846 GSTM3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.70107 superior rostral gyrus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.965998 CTCF_G1E-ER4_mm9_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null SOWAHD CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.42698 IX, right, paravermis Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.944472 Subcortical volume (min-P) GWAS Catalog SNP-Phenotype Associations 2025 1.0 1.33979 FOXO1::ELK1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 56.1099 posterior hypothalamic area, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.834862 FOSL2::JUN JASPAR Predicted Human Transcription Factor Targets 2025 1.0 25.3109 SCRT2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 26.248 PMC11772884-41421_2024_747_MOESM6_ESM.xlsx-8_DEGs_RUNX1-OE_vs_control-Gene_Symbol_RUNX1 Rummagene Transcription Factor Associations 2026 1.0 null H3K4me1_megakaryocyte_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null ASXL3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.37188 H3K27me3_kidney_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null E2F4_CH12.LX_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null HHIPL1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.85888 ZNF418 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 35.0695 paravermis of cerebellum Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.900446 ETV2::FOXI1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 42.1718 Nr1h2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 15.4537 RUNX1-30185409-HPC-MOUSE-BONEMARROW-LEUKEMIA ChEA Transcription Factor Targets 2022 1.0 null cingulum bundle, left Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.53007 GSE139948_3_v_6_metformin_mouse RummaGEO Drug Perturbation Signatures -1.0 null V Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.24686 CTCF_lung_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE202434,GSE202438_9_v_14_talazoparib_human RummaGEO Drug Perturbation Signatures 1.0 null Cortical thickness (MOSTest) GWAS Catalog SNP-Phenotype Associations 2025 1.0 0.852288 MZ in temporal polar cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.33621 ETHE1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 4.27391 MZ in orbital frontal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.08261 Tassel TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.071 TFAP4 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 43.6765 ONECUT3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.07625 ZBTB22 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.84917 GSE199255,GSE199356_4_v_1_pds5a_mouse RummaGEO Gene Perturbation Signatures 1.0 null ETV5::FIGLA JASPAR Predicted Human Transcription Factor Targets 2025 1.0 49.366 AFTPH CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.10443 GSE210885_3_v_7_klf4_mouse RummaGEO Gene Perturbation Signatures -1.0 null Pparg::Rxra JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 29.2347 FOS::JUN JASPAR Predicted Human Transcription Factor Targets 2025 1.0 25.0387 TBX4 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 34.3012 H3K4me3_G1E_mm9_3 ENCODE Histone Modification Site Profiles 1.0 null CTCF_CH12.LX_mm9_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE93674_2_v_0_ezh2_mouse RummaGEO Gene Perturbation Signatures -1.0 null TBL1Y CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.53468 tail of caudate Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -2.09993 HAND2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 41.3376 GSE152432_5_v_4_zrsr2_mouse RummaGEO Gene Perturbation Signatures 1.0 null ZNF189 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 44.3098 496100543_FWM_probable Alzheimer's disease_TBI_78_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 11.579 CTCF_MEL cell line_mm9_5 ENCODE Transcription Factor Binding Site Profiles 1.0 null PMC7498599-41467_2020_18508_MOESM11_ESM.xlsx-8cell_CTCF-Unnamed_3_CTCF Rummagene Transcription Factor Associations 2026 1.0 null H3K27me3_megakaryocyte_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE130081,GSE130082_5_v_1_neil2_mouse RummaGEO Gene Perturbation Signatures 1.0 null TBXT JASPAR Predicted Human Transcription Factor Targets 2025 1.0 26.508 TGIF2LY JASPAR Predicted Human Transcription Factor Targets 2025 1.0 36.748 multiform (lateral) division of MD Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.992583 ELL CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.74334 CTCF_limb_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null posterior orbital gyrus, right Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -0.834979 ERF::FOXI1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 36.7481 TEAD3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 17.5121 496100504_TCx_probable Alzheimer's disease_TBI_89_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 4.78495 rostral (anterior) extramural migratory stream Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.37441 H3K4me1_brain_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null ESRRG_Deficiency_GDS2811_638_mouse_Fetal heart - Homozygous null mutant GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null Ptf1a JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 60.7722 CHAC2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.63885 COPI-coated vesicle COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.873 CACNG7 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.01472 PMF1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.02647 GSE89154_1_v_0_proscillaridin_human RummaGEO Drug Perturbation Signatures 1.0 null Primary spermatocyte TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.419 PMC7498599-41467_2020_18508_MOESM11_ESM.xlsx-Mor_CTCF-Unnamed_1_CTCF Rummagene Transcription Factor Associations 2026 1.0 null VI, right, lateral hemisphere Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.85031 PKNOX2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 42.4779 PMC6555970-40246_2019_210_MOESM1_ESM.xlsx-LF_genes_R_genes-Common_genes_in_all_R_species_not_found_in_common_genes_of_LF_species_LTF Rummagene Transcription Factor Associations 2026 1.0 null TGIF2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 41.1894 GIPC1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.77349 ETV5::FOXI1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 46.334 TUBB3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.49798 Premature ejaculation DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 2.192 GSE202434,GSE202438_4_v_14_talazoparib_human RummaGEO Drug Perturbation Signatures 1.0 null frontal pole, left, medial aspect Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.33914 rostral ventral respiratory cell group Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.47267 GSE248935_1_v_0_cd14_human RummaGEO Gene Perturbation Signatures -1.0 null temporal pole, right, inferior aspect Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles -1.0 -1.53461 CTCF_G1E_mm9_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null Perturb_820_OE_Rspo1_SRP325709 PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations -1.0 -20.0 H3K4me3_G1E-ER4_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null lateral subdivision of area 9 Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -2.12623 TFAP4::FLI1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 34.016 VZ in caudal subicular cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.961118 Refractive error DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.212 caudal portion of VFC (area 44) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.3688 Subcortical volume (MOSTest) GWAS Catalog SNP-Phenotype Associations 2025 1.0 1.0 ZNF701 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 70.1794 MATN4 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.11247 anteromedial nucleus of thalamus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.27346 VIIIB, left, lateral hemisphere Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 1.18244 ZNF175 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 31.2229 PMC12019336-41467_2025_58868_MOESM5_ESM.xlsx-Open_peaks_IKAROS_WT-Unnamed_11_IKZF1 Rummagene Transcription Factor Associations 2026 1.0 null Crus II, left, lateral hemisphere Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles 1.0 0.833178 lateral reticular nucleus (principal part) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.59448 WDR75 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.22282 Germ plasm COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 1.094