association	dataset	threshold value	standardized value
HCC2279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.33066
SK-MM-2	COSMIC Cell Line Gene CNV Profiles	1.0	2.12225
SC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32671
SK-MM-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.68135
NCI-H1651	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.83007
CALU-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.28988
regulator	GeneRIF Biological Term Annotations	1.0	null
inhibit	GeneRIF Biological Term Annotations	1.0	null
MKN-74	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.19175
HCC1171	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.22695
RAMOS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.41006
DMS454	CCLE Cell Line Gene CNV Profiles	1.0	1.35297
DMS53	CCLE Cell Line Gene CNV Profiles	1.0	1.56539
acts	GeneRIF Biological Term Annotations	1.0	null
COLO680N	CCLE Cell Line Gene CNV Profiles	-1.0	-1.76082
SU8686	CCLE Cell Line Gene CNV Profiles	-1.0	-1.93861
NCI-H2110	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.53279
PE/CA-PJ15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.826285
GRANTA519	CCLE Cell Line Gene CNV Profiles	1.0	1.43329
SOX10	MotifMap Predicted Transcription Factor Targets	1.0	null
RPMI 8226	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.28874
NCIH1963	CCLE Cell Line Gene CNV Profiles	1.0	2.28456
ATRFLOX	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32797
A172	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.914442
COV362	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.858613
UACC893	CCLE Cell Line Gene CNV Profiles	-1.0	-1.43401
HCA-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08686
Neuro D	MotifMap Predicted Transcription Factor Targets	1.0	null
JJN-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.28874
FADU	CCLE Cell Line Gene CNV Profiles	-1.0	-1.86737
JHOS4	CCLE Cell Line Gene CNV Profiles	1.0	1.97247
OUMS-23	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.65056
OCIMY7	CCLE Cell Line Gene CNV Profiles	1.0	1.42761
NCI-H2198	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.861055
correlated	GeneRIF Biological Term Annotations	1.0	null
SNU869	CCLE Cell Line Gene CNV Profiles	-1.0	-2.3251
functions	GeneRIF Biological Term Annotations	1.0	null
undifferentiated	GeneRIF Biological Term Annotations	1.0	null
HSC3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.42942
SW 1573	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.858613
HCC1428	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.858613
LBP-1	MotifMap Predicted Transcription Factor Targets	1.0	null
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
embryonic	GeneRIF Biological Term Annotations	1.0	null
SW 480	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.40818
HCC1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.98118
KURAMOCHI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.53279
OVCAR4	CCLE Cell Line Gene CNV Profiles	-1.0	-1.56537
NCI-H2009	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2712
MDA-MB-175-VII	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02694
HCC4011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.69803
breast	GeneRIF Biological Term Annotations	1.0	null
pituitary	GTEx Tissue Gene Expression Profiles	1.0	0.897403
endometrial	GeneRIF Biological Term Annotations	1.0	null
SW1116	CCLE Cell Line Gene CNV Profiles	-1.0	-1.39015
NCIH1385	CCLE Cell Line Gene CNV Profiles	1.0	1.36329
COR-L47	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.73888
HCC1395	CCLE Cell Line Gene CNV Profiles	1.0	2.12572
SNU213	CCLE Cell Line Gene CNV Profiles	-1.0	-1.44753
positively	GeneRIF Biological Term Annotations	1.0	null
stem	GeneRIF Biological Term Annotations	1.0	null
state	GeneRIF Biological Term Annotations	1.0	null
KMS-26	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.35885
AP-2rep	MotifMap Predicted Transcription Factor Targets	1.0	null
LS123	CCLE Cell Line Gene CNV Profiles	-1.0	-1.35171
mir145	GeneRIF Biological Term Annotations	1.0	null
OVMANA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02663
GRANTA-519	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.6615
RERF-LC-KJ	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.69803
RI1	CCLE Cell Line Gene CNV Profiles	1.0	2.59274
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0131
DMS 53	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.4516
HL-60	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.57737
lincror	GeneRIF Biological Term Annotations	1.0	null
NCI-H889	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.36602
HCC2688	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.60492
DMS-53	COSMIC Cell Line Gene CNV Profiles	1.0	2.12225
KP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.33611
COLO 699	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0131
SKMM2	CCLE Cell Line Gene CNV Profiles	1.0	3.27341
TMD8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.57875
NCIH146	CCLE Cell Line Gene CNV Profiles	1.0	1.65857
HL60	CCLE Cell Line Gene CNV Profiles	1.0	1.3323
ets	GeneRIF Biological Term Annotations	1.0	null
NCO2	CCLE Cell Line Gene CNV Profiles	1.0	1.39174
SUM 229PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.847796
emt	GeneRIF Biological Term Annotations	1.0	null
NCI-H146	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.14344
SW 620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.22414
HCT 116	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32671
VMRC-LCD	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2712
NCI-H1568	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.39067
OCIMY5	CCLE Cell Line Gene CNV Profiles	1.0	1.69837
OCI-LY-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.86407
KMS-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.913501
KMS26	CCLE Cell Line Gene CNV Profiles	1.0	1.57722
C-33 A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.869095
KP2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.71845
KMM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0131
BT-549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.861055
CL14	CCLE Cell Line Gene CNV Profiles	-1.0	-1.70666
HCC1395	COSMIC Cell Line Gene CNV Profiles	1.0	2.12225
bladder	GTEx Tissue Gene Expression Profiles	-1.0	-0.996737
MDA-MB-330	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.32901
NCI-H1930	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05249
OCILY3	CCLE Cell Line Gene CNV Profiles	1.0	1.90278
MC116	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32671
DMS 454	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19211
SNU1033	CCLE Cell Line Gene CNV Profiles	-1.0	-2.21735
mediation	GeneRIF Biological Term Annotations	1.0	null
HT-55	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.941491
KNS-62	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.39067
MHHCALL2	CCLE Cell Line Gene CNV Profiles	1.0	1.5972
BICR 22	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06939
SUPHD1	CCLE Cell Line Gene CNV Profiles	1.0	1.86233
promote	GeneRIF Biological Term Annotations	1.0	null
YY1	MotifMap Predicted Transcription Factor Targets	1.0	null
mirnas	GeneRIF Biological Term Annotations	1.0	null
HCC2270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.60492
carcinogenesis	GeneRIF Biological Term Annotations	1.0	null
thyroid	GTEx Tissue Gene Expression Profiles	1.0	0.837074
HCC1937	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.984229
OUMS23	CCLE Cell Line Gene CNV Profiles	-1.0	-1.3606
SNU61	CCLE Cell Line Gene CNV Profiles	-1.0	-1.48627
OAW42	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00637
NCI-H1703	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.94988
NCI-H929	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.920402
NUGC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.847796
U-2932	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.55312
MAFA	MotifMap Predicted Transcription Factor Targets	1.0	null
T3M4	CCLE Cell Line Gene CNV Profiles	-1.0	-1.42796
NCI-H1792	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.94889
HARA	CCLE Cell Line Gene CNV Profiles	-1.0	-1.688
KARPAS-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10269
BHY	CCLE Cell Line Gene CNV Profiles	-1.0	-1.37004
NCIH2126	CCLE Cell Line Gene CNV Profiles	-1.0	-2.59447
EBC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.22308
GSS	CCLE Cell Line Gene CNV Profiles	1.0	1.33444
NCIH747	CCLE Cell Line Gene CNV Profiles	-1.0	-1.6648
HCC1359	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
NCI-H596	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.88561
KYSE-450	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.29655
ME-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.92121
sponge	GeneRIF Biological Term Annotations	1.0	null
cervix uteri	GTEx Tissue Gene Expression Profiles	-1.0	-2.10019
ME1	CCLE Cell Line Gene CNV Profiles	1.0	1.34052
EPLC272H	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36629
WSU-FSCCL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32797
OCI-LY-10	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.12241
BFTC-905	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.53216
CORL95	CCLE Cell Line Gene CNV Profiles	1.0	1.68247
SNU-5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07571
G140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.39118
NCI-H1355	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0829
RI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.21946
SU-DHL-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19462
COV504	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.861055
HCC1937	CCLE Cell Line Gene CNV Profiles	-1.0	-1.78631
HUG1N	CCLE Cell Line Gene CNV Profiles	-1.0	-1.4713
KARPAS-1106P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.15478
FADU	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.88561
MINO	CCLE Cell Line Gene CNV Profiles	1.0	1.47676
NCI-H209	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.25448
COLO668	CCLE Cell Line Gene CNV Profiles	1.0	1.51379
G-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0131
T84	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.53279
NCI-N417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.94988
SW 900	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.39131
ECGI10	CCLE Cell Line Gene CNV Profiles	-1.0	-2.08591
HCC1359	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.983855
differentiation	GeneRIF Biological Term Annotations	1.0	null
QGP-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.869095
NCIH69	CCLE Cell Line Gene CNV Profiles	1.0	1.76024
HCC60	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.94988
SW 1463	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.826285
SW 1116	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.53216
COLO 680N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.60563
NCIH889	CCLE Cell Line Gene CNV Profiles	1.0	2.06083
OVCAR-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.72297
TOLEDO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.900512
metastasis	GeneRIF Biological Term Annotations	1.0	null
NCIH211	CCLE Cell Line Gene CNV Profiles	1.0	1.86992
OVKATE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06939
NCI-H2126	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.858613
BALL-1	COSMIC Cell Line Gene CNV Profiles	1.0	2.12225