association dataset threshold value standardized value HUH-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.4027 HCC2935 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.848558 H3K4me1_Adipose Derived Mesenchymal Stem Cell Cultured Cells Roadmap Epigenomics Histone Modification Site Profiles 1.0 null HCC70 COSMIC Cell Line Gene CNV Profiles -1.0 -3.83684 MYC_MCF 10A_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null H3K9ac_Adipose Derived Mesenchymal Stem Cell Cultured Cells Roadmap Epigenomics Histone Modification Site Profiles 1.0 null SCC9 CCLE Cell Line Gene Expression Profiles -1.0 -1.8038 CTCF_fibroblast of pulmonary artery_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_WI38_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null OCI-LY-10 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.958227 A3KAW CCLE Cell Line Gene Expression Profiles 1.0 2.69216 CTCF_MCF-7_hg19_6 ENCODE Transcription Factor Binding Site Profiles 1.0 null RERF-LC-KJ Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.40323 HS695T CCLE Cell Line Gene Expression Profiles 1.0 1.42115 mania GWASdb SNP-Phenotype Associations 1.0 0.499404 HEYA8 CCLE Cell Line Gene Expression Profiles 1.0 1.80651 PL-21 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.01136 MDA-MB-361 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.30262 HCC70 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -2.64478 OVCAR-5 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.06076 Telomere length GWAS Catalog SNP-Phenotype Associations 1.0 0.22914 H3K27me3_HepG2_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null IM-95 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.66561 mood disorder GWASdb SNP-Disease Associations 1.0 0.297112 H3K4me2_fibroblast of lung_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null ISTMES2 CCLE Cell Line Gene CNV Profiles 1.0 2.50132 CTCF_HeLa-S3_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null H3K4me3_Adipose Derived Mesenchymal Stem Cell Cultured Cells Roadmap Epigenomics Histone Modification Site Profiles 1.0 null CEBPB ENCODE Transcription Factor Targets 1.0 null H3K4me1_endothelial cell of umbilical vein_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null CTCF_BE2C_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_skin fibroblast_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null RL CCLE Cell Line Gene Expression Profiles 1.0 1.48519 SUDHL6 CCLE Cell Line Gene Expression Profiles 1.0 1.75975 JUND_H1-hESC_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null SJSA1 CCLE Cell Line Gene Expression Profiles -1.0 -1.69807 THP1 CCLE Cell Line Gene Expression Profiles 1.0 1.48142 HS 578T Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 2.36207 CTCF_fibroblast of dermis_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null EFM19 CCLE Cell Line Gene CNV Profiles -1.0 -1.37043 HT29 CCLE Cell Line Gene CNV Profiles -1.0 -2.13093 SNU349 CCLE Cell Line Gene Expression Profiles -1.0 -1.6298 HPAFII CCLE Cell Line Gene CNV Profiles -1.0 -1.6804 RT-112 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.849008 DV-90 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.42322 STAT3_MCF 10A_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null H3K4me3_osteoblast_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null RKN CCLE Cell Line Gene Expression Profiles 1.0 2.21875 CTCF_fibroblast of gingiva_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null estradiol_homo sapiens_gpl14550_gse35034 GEO Signatures of Differentially Expressed Genes for Small Molecules -1.0 null HCC1569 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.03703 CTCF_HCT116_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_epithelial cell of esophagus_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null F36P CCLE Cell Line Gene Expression Profiles -1.0 -3.20243 CTCF_A549_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null abnormality of immune system physiology GWASdb SNP-Phenotype Associations 1.0 0.102532 CTCF_endothelial cell of umbilical vein_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null SNU-620 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 2.04013 RAD21_HepG2_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null G59 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.58435 SNU620 CCLE Cell Line Gene CNV Profiles 1.0 1.51208 ME-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.931728 H322T Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.00971 H2AFZ_A549_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null EZH2_T-cell acute lymphoblastic leukemia_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null MG-63 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.983965 SNU61 CCLE Cell Line Gene CNV Profiles -1.0 -1.66853 H3K4me1_osteoblast_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null NCIH810 CCLE Cell Line Gene CNV Profiles -1.0 -1.35387 CTCF_HepG2_hg19_5 ENCODE Transcription Factor Binding Site Profiles 1.0 null ECC10 CCLE Cell Line Gene CNV Profiles 1.0 1.66283 PANC 08.13 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.15537 GDM1 CCLE Cell Line Gene CNV Profiles 1.0 1.36849 WSU-DLCL2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.42322 immunodeficiency GWASdb SNP-Phenotype Associations 1.0 0.681679 H2AFZ_skeletal muscle myoblast_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_HeLa-S3_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null HS683 CCLE Cell Line Gene Expression Profiles -1.0 -2.31141 RKO CCLE Cell Line Gene Expression Profiles -1.0 -2.68768 NCI-H2198 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.869885 NCI-H929 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.23665 STAT3 ENCODE Transcription Factor Targets 1.0 null KURAMOCHI Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.2792 TE441T CCLE Cell Line Gene CNV Profiles 1.0 1.46549 FOS_MCF 10A_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null SMC3_HeLa-S3_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null H3K4me1_astrocyte_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null CTCF_MCF-7_hg19_5 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCFL ENCODE Transcription Factor Targets 1.0 null H2AFZ_mammary epithelial cell_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null FOXA1_T47D_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null HUH7 CCLE Cell Line Gene Expression Profiles -1.0 -1.69417 OCI-AML2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.878106 MYC_MCF 10A_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CEBPB_HepG2_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null HT-29 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.64876 H3K27me3_CD14-positive monocyte_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null NCI-H810 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.21483 CORL23 CCLE Cell Line Gene Expression Profiles -1.0 -1.70156 TCCSUP CCLE Cell Line Gene Expression Profiles -1.0 -1.66786 THP-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.42322 H3K4me2_fibroblast of dermis_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null CTCF_HepG2_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null MAPK14_knockdown_139_GSE31912 GEO Signatures of Differentially Expressed Genes for Kinase Perturbations -1.0 -1.28007 FOXA1_HepG2_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null MDAMB361 CCLE Cell Line Gene CNV Profiles -1.0 -1.64651 H3K4me1_Muscle Satellite Cultured Cells Roadmap Epigenomics Histone Modification Site Profiles 1.0 null TOV-112D Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.856338 JHUEM1 CCLE Cell Line Gene Expression Profiles -1.0 -1.55291 schizophrenia GWASdb SNP-Phenotype Associations 1.0 0.486163 cognitive disorder GWASdb SNP-Disease Associations 1.0 0.171694 HCC1171 CCLE Cell Line Gene Expression Profiles -1.0 -1.78272 H3K4me1_keratinocyte_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null G292CLONEA141B1 CCLE Cell Line Gene CNV Profiles 1.0 3.2803 depression GWASdb SNP-Phenotype Associations 1.0 0.362392 H2BK15ac_IMR90 Roadmap Epigenomics Histone Modification Site Profiles 1.0 null doxorubicin_homo sapiens_gpl6947_gse25741 GEO Signatures of Differentially Expressed Genes for Small Molecules 1.0 null CTCF_GM12873_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null PANC-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.33587 KU812 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 2.36485 LAMA84 CCLE Cell Line Gene CNV Profiles 1.0 1.41122 CTCF_HepG2_hg19_6 ENCODE Transcription Factor Binding Site Profiles 1.0 null SW1271 CCLE Cell Line Gene CNV Profiles -1.0 -1.82536 psychotic disorder GWASdb SNP-Disease Associations 1.0 0.249361 NCI-H322T Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.00971 SU-DHL-4 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.33023 RAD21_HepG2_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null H3K27me3_mononuclear cell_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null KMRC20 CCLE Cell Line Gene Expression Profiles -1.0 -1.7937 disease of anatomical entity GWASdb SNP-Disease Associations 1.0 0.028237 CTCF_fibroblast of upper leg skin_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null NCI-H1703 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.06894 CTCF_K562_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null JHH-4 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.8952 CTCF_H1-hESC_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null KMS-12-PE Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.23024 FOS_MCF 10A_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null THP1 CCLE Cell Line Gene CNV Profiles 1.0 1.50382 FOS ENCODE Transcription Factor Targets 1.0 null PFEIFFER Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.944681 H3K27ac_IMR90 Roadmap Epigenomics Histone Modification Site Profiles 1.0 null JHOS-4 COSMIC Cell Line Gene CNV Profiles -1.0 -3.83684 NURR1 MotifMap Predicted Transcription Factor Targets 1.0 null OCI-AML3 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.42322 ETS2 MotifMap Predicted Transcription Factor Targets 1.0 null NCIH209 CCLE Cell Line Gene CNV Profiles 1.0 1.57359 H3K4me2_CD14-positive monocyte_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null COLO 699 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.03703 MAX ENCODE Transcription Factor Targets 1.0 null SW 1417 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.52547 SUM 52PE Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.919316 C32 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.828158 CTCF_Caco-2_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null FOS_MCF 10A_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null abnormality of the genitourinary system GWASdb SNP-Phenotype Associations 1.0 0.066961 LBP-1 MotifMap Predicted Transcription Factor Targets 1.0 null CEBPB_K562_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_endothelial cell of umbilical vein_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_K562_hg19_5 ENCODE Transcription Factor Binding Site Profiles 1.0 null OCUM-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.910187 HCC366 CCLE Cell Line Gene CNV Profiles -1.0 -1.42861 CTCF_HepG2_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null HUH-7 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.856338 CTCF_epithelial cell of proximal tubule_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null KCL22 CCLE Cell Line Gene CNV Profiles 1.0 2.06673 CAL-148 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.8724 KURAMOCHI CCLE Cell Line Gene Expression Profiles -1.0 -1.45779 HEC6 CCLE Cell Line Gene Expression Profiles 1.0 2.42613 E2F4 ENCODE Transcription Factor Targets 1.0 null ASPC-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.856338 VMRC-LCD Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.02735 COLO-704 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.08082 HCC202 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.45533 HCC2279 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.09717 H3K4me1_mammary epithelial cell_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null SUDHL4 CCLE Cell Line Gene Expression Profiles 1.0 1.7272 EZH2_H1-hESC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CAL 54 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.856338 H3K4me1_Penis Foreskin Fibroblast Primary Cells Roadmap Epigenomics Histone Modification Site Profiles 1.0 null CTCF_WERI-Rb-1_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null MV-4-11 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.959213 EZH2 ENCODE Transcription Factor Targets 1.0 null G96 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.09209 CTCF_MCF-7_hg19_8 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_fibroblast of foreskin _hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_keratinocyte_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null HCC4017 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.4027 SKNMC CCLE Cell Line Gene CNV Profiles 1.0 2.31842 HCC515 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.45533 CTCF_skeletal muscle myoblast_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null abnormality of the nervous system GWASdb SNP-Phenotype Associations 1.0 0.058776 EFM-19 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.33533 ERR2 (ESRRB) MotifMap Predicted Transcription Factor Targets 1.0 null CTCF_A549_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null H2AFZ_CD14-positive monocyte_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null KMS-34 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.87312 HCC1395 CCLE Cell Line Gene Expression Profiles 1.0 1.3626 CTCF_fibroblast of villous mesenchyme_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null CX-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.64876 CTCF_MCF-7_hg19_7 ENCODE Transcription Factor Binding Site Profiles 1.0 null NCI-H2009 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.03601 disease of mental health GWASdb SNP-Disease Associations 1.0 0.068634 CEBPB_HeLa-S3_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null SW 1116 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.27869 HUH1 CCLE Cell Line Gene CNV Profiles -1.0 -1.45505 H2BK12ac_IMR90 Roadmap Epigenomics Histone Modification Site Profiles 1.0 null disease GWASdb SNP-Disease Associations 1.0 0.034752 HCC1171 CCLE Cell Line Gene CNV Profiles -1.0 -1.67307 UKE-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.67012 OVCA 432 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.40323 CAR-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.33587 NCI-H1092 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.24445 MAFA MotifMap Predicted Transcription Factor Targets 1.0 null DMS 53 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.33587 HS895T CCLE Cell Line Gene Expression Profiles 1.0 1.36642 CTCF_osteoblast_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null NFYA ENCODE Transcription Factor Targets 1.0 null STAT6 MotifMap Predicted Transcription Factor Targets 1.0 null Neuro D MotifMap Predicted Transcription Factor Targets 1.0 null H3K27ac_osteoblast_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null HCC1806 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.926828 NFYA_GM12878_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null HPAF-II Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.21483 EZH2_myotube_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null urinary system disease GWASdb SNP-Disease Associations 1.0 0.20856 H3K4me1_A549_hg19_2 ENCODE Histone Modification Site Profiles 1.0 null NCI-H889 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.59569 HS766T CCLE Cell Line Gene Expression Profiles 1.0 1.41117 CTCF_mammary epithelial cell_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null SW1417 CCLE Cell Line Gene CNV Profiles -1.0 -1.65652 Stomach Smooth Muscle Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles 1.0 1.47485 SF539 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.30687 TOLEDO CCLE Cell Line Gene Expression Profiles 1.0 1.57435 NCIH211 CCLE Cell Line Gene CNV Profiles 1.0 1.73824 MAX_H1-hESC_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null U266B1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.82745 H3K27ac_endothelial cell of umbilical vein_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null DANG CCLE Cell Line Gene CNV Profiles -1.0 -1.55161 KMM-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.03703 OCI-M2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.24799 JVM2 CCLE Cell Line Gene Expression Profiles 1.0 1.88227 CTCF_MCF-7_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null CEBPB_H1-hESC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null NCIH1838 CCLE Cell Line Gene Expression Profiles -1.0 -1.80163 KP4 CCLE Cell Line Gene Expression Profiles -1.0 -1.69054 EZH2_keratinocyte_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null KASUMI2 CCLE Cell Line Gene Expression Profiles 1.0 2.93788 LU99 CCLE Cell Line Gene CNV Profiles -1.0 -1.63925 GSU CCLE Cell Line Gene CNV Profiles 1.0 1.43979 RAD21 ENCODE Transcription Factor Targets 1.0 null KLM1 CCLE Cell Line Gene Expression Profiles -1.0 -1.94803 DAN-G Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.981194 HCC44 CCLE Cell Line Gene Expression Profiles 1.0 1.7113 H3K4me2_astrocyte_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null KMS34 CCLE Cell Line Gene CNV Profiles 1.0 2.01461 647V CCLE Cell Line Gene Expression Profiles -1.0 -1.99587 HCC1428 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.85503 CTCF_fibroblast of skin of abdomen_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_H1-hESC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null E2F4_MCF 10A_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null SR786 CCLE Cell Line Gene Expression Profiles 1.0 1.57806 CTCF_HepG2_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null NCI-H345 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.30262 H3K4me1_skeletal muscle myoblast_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null iPS-20b Cells Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles 1.0 0.891665 HS936T CCLE Cell Line Gene Expression Profiles 1.0 1.53008 IM-95M Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.42322 LNZ308 CCLE Cell Line Gene Expression Profiles 1.0 1.44403 CTCF_choroid plexus epithelial cell_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null estradiol_homo sapiens_gpl570_gds3283 GEO Signatures of Differentially Expressed Genes for Small Molecules 1.0 null CTCFL_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null JHH4 CCLE Cell Line Gene CNV Profiles -1.0 -2.32943 SJSA1 CCLE Cell Line Gene CNV Profiles 1.0 1.59502 CEBPB_A549_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null abnormality of the immune system GWASdb SNP-Phenotype Associations 1.0 0.062234 FOXA1 ENCODE Transcription Factor Targets 1.0 null schizophrenia GWASdb SNP-Disease Associations 1.0 0.570595 CTCF_fibroblast of mammary gland_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null abnormality of the urinary system GWASdb SNP-Phenotype Associations 1.0 0.809986 RAD21_HepG2_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null BT-549 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.869885 KARPAS-620 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.17259 H2AK5ac_IMR90 Roadmap Epigenomics Histone Modification Site Profiles 1.0 null HCC202 CCLE Cell Line Gene CNV Profiles -1.0 -1.47214 CTCF_brain microvascular endothelial cell_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null behavioral abnormality GWASdb SNP-Phenotype Associations 1.0 0.161992 CTCF_HepG2_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null abnormal emotion/affect behavior GWASdb SNP-Phenotype Associations 1.0 0.272039 BT-20 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.15537 HCC12 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.42322 H2AFZ_myotube_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_mammary epithelial cell_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null H2AFZ_H1-hESC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null bipolar affective disorder GWASdb SNP-Phenotype Associations 1.0 0.499404 CtIP_DEPLETION_GDS2189_122_human_MCF10A mammary epithelial cells (MECs) GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null HS 940.T Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.33023 MYC ENCODE Transcription Factor Targets 1.0 null CTCF ENCODE Transcription Factor Targets 1.0 null H4K8ac_IMR90 Roadmap Epigenomics Histone Modification Site Profiles 1.0 null MOLM13 CCLE Cell Line Gene CNV Profiles 1.0 1.80369 H3K4me2_mammary epithelial cell_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null NCI-H1355 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.13943 DMS53 CCLE Cell Line Gene CNV Profiles -1.0 -1.35986 FOS_MCF 10A_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null HCC38 CCLE Cell Line Gene CNV Profiles -1.0 -2.02243 SMC3 ENCODE Transcription Factor Targets 1.0 null CTCF_cardiac fibroblast_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null H3K9ac_Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells Roadmap Epigenomics Histone Modification Site Profiles 1.0 null CTCF_cardiac muscle cell_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null BT549 CCLE Cell Line Gene CNV Profiles 1.0 1.68578 CTCF_H54_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null bipolar disorder GWASdb SNP-Disease Associations 1.0 0.587071 HCC2814 CCLE Cell Line Gene CNV Profiles -1.0 -1.67228 H3K4me2_keratinocyte_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null SNU-182 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.831007 KMS34 CCLE Cell Line Gene Expression Profiles 1.0 1.66825 disease by infectious agent GWASdb SNP-Disease Associations 1.0 0.147468 NCI-H820 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.53695 TEF-1 MotifMap Predicted Transcription Factor Targets 1.0 null all GWASdb SNP-Phenotype Associations 1.0 0.036597 CTCF_MCF-7_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null MKN-74 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.944681 FUOV1 CCLE Cell Line Gene Expression Profiles -1.0 -2.11835 H3K9ac_endothelial cell of umbilical vein_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null CTCF_fibroblast of pulmonary artery_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_A549_hg19_7 ENCODE Transcription Factor Binding Site Profiles 1.0 null viral infectious disease GWASdb SNP-Disease Associations 1.0 0.232295 SU-DHL-6 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.82745 H3K27me3_CD14-positive monocyte_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null H2AFZ_fibroblast of lung_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null DND41 CCLE Cell Line Gene Expression Profiles 1.0 1.59441 TYK-NU.CP-R Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.910187 BXPC-3 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.15537 H3K4me3_endothelial cell of umbilical vein_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null SH10TC CCLE Cell Line Gene Expression Profiles -1.0 -1.49626 phenotypic abnormality GWASdb SNP-Phenotype Associations 1.0 0.529832 CTCF_fibroblast of the aortic adventitia_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null kidney disease GWASdb SNP-Disease Associations 1.0 0.920453 HEV_60Day_None_GSE53731 GEO Signatures of Differentially Expressed Genes for Viral Infections 1.0 1.71943 FOXA1_T47D_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null Psoriasis vulgaris_Skin tissue_GSE14905 GEO Signatures of Differentially Expressed Genes for Diseases 1.0 1.70495 HOP-92 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.852152 COLO684 CCLE Cell Line Gene CNV Profiles 1.0 1.62324 HEC265 CCLE Cell Line Gene Expression Profiles 1.0 1.73419 abnormality of nervous system physiology GWASdb SNP-Phenotype Associations 1.0 0.090283 NCI-H1155 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.42322 NCI-H292 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.896482 CTCF_keratinocyte_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null STAT3_MCF 10A_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null H2AFZ ENCODE Transcription Factor Targets 1.0 null CPC-N Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.8724 JHOS4 CCLE Cell Line Gene CNV Profiles -1.0 -2.52705 H3K4me1_H1-hESC_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null LXFL529 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.42322 DB Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.984801 H2AFZ_astrocyte_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null SNU478 CCLE Cell Line Gene CNV Profiles -1.0 -1.55394 MT-3 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.872782 NAMALWA Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.849008 CTCF_foreskin fibroblast_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null NCI-H522 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.01724 CTCF_T-cell acute lymphoblastic leukemia_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null HCC1171 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.987181 HCC70 CCLE Cell Line Gene CNV Profiles -1.0 -3.21049 CTCF_GM12873_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null H3K4me1_CD14-positive monocyte_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null NCIH1930 CCLE Cell Line Gene Expression Profiles 1.0 1.59071 FOS_endothelial cell of umbilical vein_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null H3K4me2_endothelial cell of umbilical vein_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null CTCF_A549_hg19_9 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null NCI-H1781 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.12591 MEG01 CCLE Cell Line Gene CNV Profiles 1.0 1.64485 HCC1428 CCLE Cell Line Gene CNV Profiles -1.0 -2.07379 EFM19 CCLE Cell Line Gene Expression Profiles 1.0 1.37663 H3K14ac_IMR90 Roadmap Epigenomics Histone Modification Site Profiles 1.0 null SNU-449 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.856338 JUND ENCODE Transcription Factor Targets 1.0 null Smooth-surface caries GWAS Catalog SNP-Phenotype Associations 1.0 0.057619 OUMS-23 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.36931 CTCF_mammary epithelial cell_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null BC3C CCLE Cell Line Gene CNV Profiles 1.0 1.42108 HCC1599 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.2792 human immunodeficiency virus infectious disease GWASdb SNP-Disease Associations 1.0 0.78442 DOHH2 CCLE Cell Line Gene Expression Profiles 1.0 2.08975 H3K4me2_osteoblast_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null CTCF_myotube_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null HCC1493 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.02819 HCC366 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.1549 A-Vietnam-1203_CIP048_RG3-2004(H5N1)mutPB1-F2del_18Hour_None_GSE43203 GEO Signatures of Differentially Expressed Genes for Viral Infections 1.0 1.24012 KATO III Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.37712 TE8 CCLE Cell Line Gene Expression Profiles -1.0 -2.76429 H3K4me1_Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells Roadmap Epigenomics Histone Modification Site Profiles 1.0 null CTCF_astrocyte of the cerebellum_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_fibroblast of lung_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null OCI-AML5 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.06959 NCIH2171 CCLE Cell Line Gene Expression Profiles -1.0 -1.76474 SW1116 CCLE Cell Line Gene CNV Profiles -1.0 -1.63435 CHAGO-K-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.896482 KALS1 CCLE Cell Line Gene Expression Profiles 1.0 1.71386 H3K9ac_fibroblast of dermis_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null CEBPB_IMR-90_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null